Mercurial > repos > crs4 > sopra
view tool_dependencies.xml @ 1:d180348fe9db draft
Use new package_bowtie_1_0_0 .
author | crs4 |
---|---|
date | Tue, 29 Oct 2013 05:27:29 -0400 |
parents | 988d5a82291a |
children |
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<?xml version="1.0"?> <tool_dependency> <package name="bowtie" version="1.0.0"> <repository changeset_revision="9fcaaedbbfd6" name="package_bowtie_1_0_0" owner="iuc" toolshed="http://toolshed.g2.bx.psu.edu" /> </package> <package name="sopra" version="1.4.6"> <install version="1.0"> <actions> <action type="download_by_url">http://www.physics.rutgers.edu/~anirvans/SOPRA/SOPRA_v1.4.6.zip</action> <action type="move_directory_files"> <source_directory>source_codes_v1.4.6/SOPRA_with_prebuilt_contigs</source_directory> <destination_directory>$INSTALL_DIR/SOPRA_with_prebuilt_contigs</destination_directory> </action> <action type="shell_command">chmod 755 $INSTALL_DIR/SOPRA_with_prebuilt_contigs/*.pl</action> <action type="set_environment"> <environment_variable action="prepend_to" name="PATH">$INSTALL_DIR/SOPRA_with_prebuilt_contigs</environment_variable> </action> </actions> </install> </package> </tool_dependency>