# HG changeset patch
# User crs4
# Date 1383038849 14400
# Node ID d180348fe9dbd424ff3be64b811026d18bbf98fe
# Parent  988d5a82291a1750941a2606676c5f3d3c5afa57
Use new package_bowtie_1_0_0 .

diff -r 988d5a82291a -r d180348fe9db tool_dependencies.xml
--- a/tool_dependencies.xml	Thu Oct 24 14:02:10 2013 -0400
+++ b/tool_dependencies.xml	Tue Oct 29 05:27:29 2013 -0400
@@ -1,8 +1,8 @@
 <?xml version="1.0"?>
 <tool_dependency>
-  <!--<package name="bowtie" version="1.0.0">
-    <repository name="package_bowtie_1_0_0" owner="iuc" />
-  </package>-->
+  <package name="bowtie" version="1.0.0">
+    <repository changeset_revision="9fcaaedbbfd6" name="package_bowtie_1_0_0" owner="iuc" toolshed="http://toolshed.g2.bx.psu.edu" />
+  </package>
   <package name="sopra" version="1.4.6">
     <install version="1.0">
       <actions>
@@ -13,7 +13,7 @@
         </action>
         <action type="shell_command">chmod 755 $INSTALL_DIR/SOPRA_with_prebuilt_contigs/*.pl</action>
         <action type="set_environment">
-          <environment_variable name="PATH" action="prepend_to">$INSTALL_DIR/SOPRA_with_prebuilt_contigs</environment_variable>
+          <environment_variable action="prepend_to" name="PATH">$INSTALL_DIR/SOPRA_with_prebuilt_contigs</environment_variable>
         </action>
       </actions>
     </install>