|
0
|
1 <?xml version="1.0"?>
|
|
|
2 <tool_dependency>
|
|
|
3 <package name="ssake" version="3.8">
|
|
|
4 <install version="1.0">
|
|
|
5 <actions>
|
|
|
6 <action type="download_by_url" target_filename="ssake_v3-8.tar.gz">http://www.bcgsc.ca/platform/bioinfo/software/ssake/releases/3.8/ssake_v3-8-tar.gz</action>
|
|
|
7 <!-- fix for Perl >= 5.16.0-->
|
|
|
8 <action type="shell_command">sed -i -e 's/require "getopts.pl"/use Getopt::Std/' -e 's/&Getopts/getopts/' SSAKE tools/TQSfastq.pl</action>
|
|
|
9 <action type="move_directory_files">
|
|
|
10 <source_directory>.</source_directory>
|
|
|
11 <destination_directory>$INSTALL_DIR</destination_directory>
|
|
|
12 </action>
|
|
|
13 <action type="set_environment">
|
|
|
14 <environment_variable name="PATH" action="prepend_to">$INSTALL_DIR</environment_variable>
|
|
|
15 </action>
|
|
|
16 <action type="set_environment">
|
|
|
17 <environment_variable name="PATH" action="prepend_to">$INSTALL_DIR/tools</environment_variable>
|
|
|
18 </action>
|
|
|
19 </actions>
|
|
|
20 </install>
|
|
|
21 </package>
|
|
|
22 </tool_dependency>
|
