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comparison tool_dependencies.xml @ 0:0ec408bcfc80 draft

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author crs4
date Wed, 11 Sep 2013 12:51:21 -0400
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children 386166019772
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-1:000000000000 0:0ec408bcfc80
1 <?xml version="1.0"?>
2 <tool_dependency>
3 <package name="ssake" version="3.8">
4 <install version="1.0">
5 <actions>
6 <action type="download_by_url" target_filename="ssake_v3-8.tar.gz">http://www.bcgsc.ca/platform/bioinfo/software/ssake/releases/3.8/ssake_v3-8-tar.gz</action>
7 <!-- fix for Perl >= 5.16.0-->
8 <action type="shell_command">sed -i -e 's/require "getopts.pl"/use Getopt::Std/' -e 's/&amp;Getopts/getopts/' SSAKE tools/TQSfastq.pl</action>
9 <action type="move_directory_files">
10 <source_directory>.</source_directory>
11 <destination_directory>$INSTALL_DIR</destination_directory>
12 </action>
13 <action type="set_environment">
14 <environment_variable name="PATH" action="prepend_to">$INSTALL_DIR</environment_variable>
15 </action>
16 <action type="set_environment">
17 <environment_variable name="PATH" action="prepend_to">$INSTALL_DIR/tools</environment_variable>
18 </action>
19 </actions>
20 </install>
21 </package>
22 </tool_dependency>