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comparison tool_dependencies.xml @ 1:386166019772 draft

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Uploaded
author crs4
date Tue, 07 Jan 2014 04:48:50 -0500
parents 0ec408bcfc80
children f20db7280f89
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0:0ec408bcfc80 1:386166019772
1 <?xml version="1.0"?> 1 <?xml version="1.0"?>
2 <tool_dependency> 2 <tool_dependency>
3 <package name="ssake" version="3.8"> 3 <package name="ssake" version="3.8.1">
4 <install version="1.0"> 4 <install version="1.0">
5 <actions> 5 <actions>
6 <action type="download_by_url" target_filename="ssake_v3-8.tar.gz">http://www.bcgsc.ca/platform/bioinfo/software/ssake/releases/3.8/ssake_v3-8-tar.gz</action> 6 <action type="download_by_url" target_filename="ssake_v3-8-1.tar.gz">http://www.bcgsc.ca/platform/bioinfo/software/ssake/releases/3.8.1/ssake_v3.8.1-tar.gz</action>
7 <!-- fix for Perl >= 5.16.0-->
8 <action type="shell_command">sed -i -e 's/require "getopts.pl"/use Getopt::Std/' -e 's/&amp;Getopts/getopts/' SSAKE tools/TQSfastq.pl</action>
9 <action type="move_directory_files"> 7 <action type="move_directory_files">
10 <source_directory>.</source_directory> 8 <source_directory>.</source_directory>
11 <destination_directory>$INSTALL_DIR</destination_directory> 9 <destination_directory>$INSTALL_DIR</destination_directory>
12 </action> 10 </action>
13 <action type="set_environment"> 11 <action type="set_environment">