Mercurial > repos > crs4 > sspace

comparison readme.rst @ 1:93fa7ecb5292 draft

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
Directly call SSPACE, remove sspace.py and hidden library file output. Use $GALAXY_SLOTS instead of $SSPACE_SITE_OPTIONS. Add readme.rst .
author crs4
date Fri, 21 Feb 2014 04:17:55 -0500
parents
children bc4451edb703
comparison
equal deleted inserted replaced
0:b1be94418db9 1:93fa7ecb5292
1 SSPACE wrapper
2 ==============
3
4 Configuration
5 -------------
6
7 sspace tool may be configured to use more than one CPU core by selecting an appropriate destination for this tool in Galaxy job_conf.xml file (see https://wiki.galaxyproject.org/Admin/Config/Jobs and https://wiki.galaxyproject.org/Admin/Config/Performance/Cluster ).
8
9 If you are using Galaxy release_2013.11.04 or later, this tool will automatically use the number of CPU cores allocated by the job runner according to the configuration of the destination selected for this tool.
10
11 If instead you are using an older Galaxy release, you should also add a line
12
13 GALAXY_SLOTS=N; export GALAXY_SLOTS
14
15 (where N is the number of CPU cores allocated by the job runner for this tool) to the file
16
17 <tool_dependencies_dir>/sspace/2.0/crs4/sspace/<hash_string>/env.sh
18
19 Version history
20 ---------------
21
22 - Release 1: Directly call SSPACE, remove sspace.py and hidden library file output. Use $GALAXY_SLOTS instead of $SSPACE_SITE_OPTIONS. Add readme.rst .
23 - Release 0: Initial release in the Tool Shed.
24
25 Development
26 -----------
27
28 Development is hosted at https://bitbucket.org/crs4/orione-tools . Contributions and bug reports are very welcome!