Mercurial > repos > crs4 > sspace
diff readme.rst @ 1:93fa7ecb5292 draft
Directly call SSPACE, remove sspace.py and hidden library file output. Use $GALAXY_SLOTS instead of $SSPACE_SITE_OPTIONS. Add readme.rst .
author | crs4 |
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date | Fri, 21 Feb 2014 04:17:55 -0500 |
parents | |
children | bc4451edb703 |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/readme.rst Fri Feb 21 04:17:55 2014 -0500 @@ -0,0 +1,28 @@ +SSPACE wrapper +============== + +Configuration +------------- + +sspace tool may be configured to use more than one CPU core by selecting an appropriate destination for this tool in Galaxy job_conf.xml file (see https://wiki.galaxyproject.org/Admin/Config/Jobs and https://wiki.galaxyproject.org/Admin/Config/Performance/Cluster ). + +If you are using Galaxy release_2013.11.04 or later, this tool will automatically use the number of CPU cores allocated by the job runner according to the configuration of the destination selected for this tool. + +If instead you are using an older Galaxy release, you should also add a line + + GALAXY_SLOTS=N; export GALAXY_SLOTS + +(where N is the number of CPU cores allocated by the job runner for this tool) to the file + + <tool_dependencies_dir>/sspace/2.0/crs4/sspace/<hash_string>/env.sh + +Version history +--------------- + +- Release 1: Directly call SSPACE, remove sspace.py and hidden library file output. Use $GALAXY_SLOTS instead of $SSPACE_SITE_OPTIONS. Add readme.rst . +- Release 0: Initial release in the Tool Shed. + +Development +----------- + +Development is hosted at https://bitbucket.org/crs4/orione-tools . Contributions and bug reports are very welcome!