<tool id="synteny_parse" name="synteny_parse">
	<description>Parse synteny information from BlastXML.</description>
	<requirements>
	  <!-- <requirement type="package" version="2.7.4">python</requirement>	  -->
	  <requirement type="package" version="1.65">biopython</requirement>
          <requirement type="python-module">Bio</requirement>               	
          <requirement type="python-module">Bio.Blast</requirement>               	
        </requirements>
	<command interpreter="python">synteny_parse.py
		--evalue="${minE.value}"
		--min-identity="${minID.value}"
		--min-query-coverage="${minQCOV.value}"		
		$blastXML_in $out
		</command>
	<inputs>
		<param name="blastXML_in" type="data" format="xml" label="BLAST xml output" />
		<param name="minE" type="float" value="1e-10" label="e-value cutoff" />
		<param name="minID" type="float" value="0.75" label="identity cutoff" />
		<param name="minQCOV" type="float" value="0.75" label="query-coverage cutoff" />
 amino acid sequences" />
	</inputs>
	<outputs>
		<data format="tabular" name="out" label="Filtered Blast results ${on_string}" />
	</outputs>

	<help>
		This tool does stuff.
	</help>
</tool>