Mercurial > repos > cstrittmatter > seqsero_v2

comparison seqsero2.xml @ 1:3b30ea175c54 draft default tip

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planemo upload commit 9b152b4a900a8cd70df992da881c7e3fa00d4e4c-dirty
author cstrittmatter
date Thu, 21 Dec 2017 12:48:10 -0500
parents 6275272ebcbc
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0:6275272ebcbc 1:3b30ea175c54
9 <requirement type="package">spades</requirement> 9 <requirement type="package">spades</requirement>
10 <requirement type="package">bedtools</requirement> 10 <requirement type="package">bedtools</requirement>
11 </requirements> 11 </requirements>
12 <command detect_errors="exit_code"><![CDATA[ 12 <command detect_errors="exit_code"><![CDATA[
13 13
14 ln -s $fastq1 sample_1.fastq; 14 ln -s $fastq1 sample_1.fastq;
15 ln -s $fastq2 sample_2.fastq; 15 ln -s $fastq2 sample_2.fastq;
16
17
18 16
19 $__tool_directory__/SeqSero2.py 17 $__tool_directory__/SeqSero2.py
20 -p $numofthr 18 -p $numofthr
21 -i sample_1.fastq sample_2.fastq 19 -i sample_1.fastq sample_2.fastq
22 -b $maptype; 20 -b $maptype;