Mercurial > repos > cstrittmatter > skesa

comparison skesa.xml @ 4:15be58c254f5 draft

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Uploaded
author estrain
date Wed, 15 Aug 2018 09:33:27 -0400
parents c546fef7fd13
children b82a1b3c5b61
comparison
equal deleted inserted replaced
3:c546fef7fd13 4:15be58c254f5
6 #if $jobtype.select != "cl" 6 #if $jobtype.select != "cl"
7 skesa 7 skesa
8 #if $jobtype.select == "asm" 8 #if $jobtype.select == "asm"
9 -i $draft 9 -i $draft
10 #else if $jobtype.select == "se" 10 #else if $jobtype.select == "se"
11 --fastq $fastq1.name 11 --fastq $fastq1
12 #else if $jobtype.select == "pe" 12 #else if $jobtype.select == "pe"
13 --fastq $fastq1.name,$fastq2 --use_paired_ends 13 --fastq $fastq1,$fastq2 --use_paired_ends
14 #end if 14 #end if
15 > results.skesa.fasta 15 > results.skesa.fasta
16 #end if 16 #end if
17 17
18 ]]></command> 18 ]]></command>