Mercurial > repos > cstrittmatter > skesa

comparison skesa.xml @ 17:53297c68021b draft

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
Uploaded
author estrain
date Thu, 16 Aug 2018 14:48:35 -0400
parents 43e83ec28faa
children 53d82924230b
comparison
equal deleted inserted replaced
16:43e83ec28faa 17:53297c68021b
12 #else if $jobtype.select == "se" 12 #else if $jobtype.select == "se"
13 --fastq $fastq1 13 --fastq $fastq1
14 #else if $jobtype.select == "pe" 14 #else if $jobtype.select == "pe"
15 --fastq $fastq1,$fastq2 --use_paired_ends 15 --fastq $fastq1,$fastq2 --use_paired_ends
16 #else if $jobtype.select == "rp" 16 #else if $jobtype.select == "rp"
17 --fastq $pairedf['forward'],$pairedf['reverse'] --use_paired_ends 17 --fastq '{$pairedf.forward}','{$pairedf.reverse}' --use_paired_ends
18 #end if 18 #end if
19 #if $cores != 0 19 #if $cores != 0
20 --cores $cores 20 --cores $cores
21 #end if 21 #end if
22 --memory $memory > results.skesa.fasta 22 --memory $memory > results.skesa.fasta