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comparison skesa.xml @ 3:c546fef7fd13 draft

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Uploaded
author estrain
date Wed, 15 Aug 2018 09:32:37 -0400
parents 2f4443bea09d
children 15be58c254f5
comparison
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2:2f4443bea09d 3:c546fef7fd13
4 </requirements> 4 </requirements>
5 <command detect_errors="exit_code"><![CDATA[ 5 <command detect_errors="exit_code"><![CDATA[
6 #if $jobtype.select != "cl" 6 #if $jobtype.select != "cl"
7 skesa 7 skesa
8 #if $jobtype.select == "asm" 8 #if $jobtype.select == "asm"
9 -i ${draft.name}.fasta 9 -i $draft
10 #else if $jobtype.select == "se" 10 #else if $jobtype.select == "se"
11 --fastq ${fastq1.name}.fastq 11 --fastq $fastq1.name
12 #else if $jobtype.select == "pe" 12 #else if $jobtype.select == "pe"
13 --fastq ${fastq1.name}.fastq,${fastq2.name}.fastq 13 --fastq $fastq1.name,$fastq2 --use_paired_ends
14 #end if 14 #end if
15 --use_paired_ends > results.skesa.fasta 15 > results.skesa.fasta
16 #end if 16 #end if
17 17
18 ]]></command> 18 ]]></command>
19 <inputs> 19 <inputs>
20 <conditional name="jobtype"> 20 <conditional name="jobtype">