# HG changeset patch
# User estrain
# Date 1534442312 14400
# Node ID ddb2fec6cf7aa4ad5545bb8b760ce209ac2d88b5
# Parent  9e6af7620b3c324b1ee3346d98cad254d9798a7b
Uploaded

diff -r 9e6af7620b3c -r ddb2fec6cf7a skesa.xml
--- a/skesa.xml	Thu Aug 16 13:54:18 2018 -0400
+++ b/skesa.xml	Thu Aug 16 13:58:32 2018 -0400
@@ -14,7 +14,7 @@
       #else if $jobtype.select == "pe"
 	--fastq $fastq1,$fastq2 --use_paired_ends
       #else if $jobtype.select == "rp"
-	--fastq $pairedfiles.forward,$pairedfiles.reverse --use_paired_ends
+	--fastq $pairedf{'forward'},$pairedf{'reverse'} --use_paired_ends
       #end if
       #if $cores != 0
       --cores $cores
@@ -50,7 +50,7 @@
               <param type="data_collection" name="collection_files" format="fastq" collection_type="list" label="FASTQS: Must be a Data Set list built from multiple fastq files" />
         </when>
          <when value="rp">
-              <param type="data_collection" collection_type="paired" name="pairedfiles" format="fastq" label="FASTQS: Must be a paired set of forward and reverse fastq files" />
+              <param type="data_collection" collection_type="paired" name="pairedf" format="fastq" label="FASTQS: Must be a paired set of forward and reverse fastq files" />
         </when>
       </conditional>
       <param name="memory" type="integer" label="Memory available (GB) [integer]" value="16" />