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changeset 24:280e8868b85e draft default tip

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Fixed handling of paired reads
author estrain
date Tue, 24 Sep 2019 11:03:40 -0400
parents e2b708d5c0d3
children
files skesa.xml
diffstat 1 files changed, 2 insertions(+), 2 deletions(-) [+]
line wrap: on
line diff
--- a/skesa.xml	Wed Oct 17 22:04:16 2018 -0400
+++ b/skesa.xml	Tue Sep 24 11:03:40 2019 -0400
@@ -14,10 +14,10 @@
         --fastq $jobtype.fastq1 
       #else if $jobtype.select == "fastq_fr"
         #set outname = $jobtype.fastq1.name
-        --fastq $jobtype.fastq1 --fastq $jobtype.fastq2
+        --fastq $jobtype.fastq1,$jobtype.fastq2
       #else if $jobtype.select == "fastq_pair"
         #set outname = $jobtype.coll.name
-        --fastq $jobtype.coll.forward --fastq $jobtype.coll.reverse
+        --fastq $jobtype.coll.forward,$jobtype.coll.reverse
       #end if
 
       #if $options.select=="advanced"