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comparison seqsero2.xml @ 8:357e38526e2a draft

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planemo upload commit c50df40caef2fb97c178d6890961e0e527992324-dirty
author cstrittmatter
date Thu, 30 Apr 2020 21:16:45 -0400
parents aa54a94b9aeb
children 43f6b7f6ebb3
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7:aa54a94b9aeb 8:357e38526e2a
9 <requirement type="package" version="0.7.17">bwa</requirement> 9 <requirement type="package" version="0.7.17">bwa</requirement>
10 <requirement type="package" version="3.13.1">spades</requirement> 10 <requirement type="package" version="3.13.1">spades</requirement>
11 <requirement type="package" version="2.27.1">bedtools</requirement> 11 <requirement type="package" version="2.27.1">bedtools</requirement>
12 </requirements> 12 </requirements>
13 <command detect_errors="exit_code"><![CDATA[ 13 <command detect_errors="exit_code"><![CDATA[
14 echo "SeqSero2 v1.1.2" ; 14 echo "SeqSero2 v1.1.0" ;
15 mkdir ./output; 15 mkdir ./output;
16 16
17 #if $reads.reads_select == 'history' 17 #if $reads.reads_select == 'history'
18 #set $name = $reads.forward.name.split('.')[0].replace(' ','_') 18 #set $name = $reads.forward.name.split('.')[0].replace(' ','_')
19 #set $forward = $reads.forward 19 #set $forward = $reads.forward