Mercurial > repos > cstrittmatter > ss2v110

changeset 12:08832c0d3cbd draft

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planemo upload commit 70dc513aa7d7ac6785847dfd86323687613b6b68-dirty
author cstrittmatter
date Fri, 15 May 2020 10:19:08 -0400
parents e8ce538c84a3
children e3b74e412f40
files bin/SeqSero2_package.py seqsero2.xml
diffstat 2 files changed, 4 insertions(+), 3 deletions(-) [+]
line wrap: on
line diff
--- a/bin/SeqSero2_package.py	Fri May 01 13:58:10 2020 -0400
+++ b/bin/SeqSero2_package.py	Fri May 15 10:19:08 2020 -0400
@@ -509,6 +509,7 @@
   #used to do seqsero xml analysis
   from Bio.Blast import NCBIXML
   handle=open(xmlfile)
+  print(handle)
   handle=NCBIXML.parse(handle)
   handle=list(handle)
   List=[]
--- a/seqsero2.xml	Fri May 01 13:58:10 2020 -0400
+++ b/seqsero2.xml	Fri May 15 10:19:08 2020 -0400
@@ -1,8 +1,8 @@
-<tool id="seqsero2v110" name="SeqSero2 v1.1.0" version="5">
+<tool id="seqsero2v110" name="SeqSero2 v1.1.1" version="5">
     <description>Salmonella serotype prediction</description>
     <requirements>
       <requirement type="package" version="3.6">python</requirement>
-      <requirement type="package" version="1.74">biopython</requirement>
+      <requirement type="package" version="1.73">biopython</requirement>
       <requirement type="package" version="2.7.1">blast</requirement>
       <requirement type="package" version="1.9">samtools</requirement>
       <requirement type="package" version="2.9.1">sra-tools</requirement>
@@ -11,7 +11,7 @@
       <requirement type="package" version="2.27.1">bedtools</requirement>
     </requirements>
     <command detect_errors="exit_code"><![CDATA[
-      echo "SeqSero2 v1.1.0" ;
+      echo "SeqSero2 v1.1.1";
       mkdir ./output;
 
       #if $reads.reads_select == 'history'