Mercurial > repos > cstrittmatter > test_eurl_vtec_wgs_pt

annotate data/amrfinder/AMR_DNA-Campylobacter @ 3:0cbed1c0a762 draft default tip

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planemo upload commit 15239f1674081ab51ab8dd75a9a40cf1bfaa93e8
author cstrittmatter
date Tue, 28 Jan 2020 10:42:31 -0500
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3
0cbed1c0a762 planemo upload commit 15239f1674081ab51ab8dd75a9a40cf1bfaa93e8
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1 >NC_022347.1@23S_ribosomal_RNA:1040292-1037381
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2 aaaaaaggtaagctactaagagcgaatggtggatgccttgactggtaaaggcgatgaaggacgtactagactgcgataag
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3 ctacggggagctgtcaagaagctttgatccgtagatttccgaatggggcaacccaatgtatagagatatacattacctat
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4 ataggagcgaacgaggggaattgaaacatcttagtaccctcaggaaaagaaatcaatagagattgcgtcagtagcggcga
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5 gcgaaagcgcaagagggcaaacccagtgcttgcactgggggttgtaggactgcaatgtgcaagaggtaagtttagcagaa
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6 cattctggaaagtatagccatagagggtgatagtcccgtatgcgaaaaacaaaccttagctagcagtatcctgagtaggg
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7 cgggacacgagaaatcctgtctgaagctgggtcgaccacgatccaaccctaaatactaataccagatcgatagtgcacaa
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8 gtaccgtgagggaaaggtgaaaagaactgaggtgatcagagtgaaatagaacctgaaaccatttgcttacaatcattcag
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9 agccctatgtagcaatacagggtgatggactgccttttgcataatgagcctgcgagttgtggtgtctggcaaggttaagc
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10 aaacgcgaagccgtagcgaaagcgagtctgaatagggcgcttagtcagatgctgcagacccgaaacgaagtgatctatcc
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11 atgagcaagttgaagctagtgtaagaactagtggaggactgaacccataggcgttgaaaagccccgggatgacttgtgga
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12 taggggtgaaaggccaatcaaacttcgtgatagctggttctctccgaaatatatttaggtatagcgttgtgtcgtaatat
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13 aagggggtagagcactgaatgggctagggcatacaccaatgtaccaaaccctatcaaactccgaataccttatatgtaat
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14 cacagcagtcaggcggcgagtgataaaatccgtcgtcaagagggaaacaacccagactaccagctaaggtccctaaatct
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15 tacttaagtggaaaacgatgtgaagttacttaaacaaccaggaggttggcttagaagcagccatcctttaaagaaagcgt
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16 aatagctcactggtctagtgattttgcgcggaaaatataacggggctaaagtaagtaccgaagctgtagacttgcgcaca
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17 acttagattatttaagtttagaatatgagaaactaagttatatgtttagttatatttttactgatttttatagagtaaag
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18 atagaaataaaacttagtaaaatcagtaaaaatattcttagactaaagttaagtagtttaagttgtgtgcaagtggtagg
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19 agagcgttctatttgcgtcgaaggtataccggtaaggagtgctggagcgaatagaagtgagcatgcaggcatgagtagcg
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20 ataattaatgtgagaatcattaacgccgtaaacccaaggtttcctacgcgatgctcgtcatcgtagggttagtcgggtcc
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21 taagtcgagtccgaaaggggtagacgatggcaaattggttaatattccaataccaacattagtgtgcgatggaaggacgc
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22 ttagggctaagggggctagcggatggaagtgctagtctaaggtcgtaggaggttatacaggcaaatccgtataacaatac
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23 tccgagaactgaaaggctttttgaagtcttcggatggatagaagaacccctgatgccgtcgagccaagaaaagtttctaa
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24 gtttagctaatgttgcccgtaccgtaaaccgacacaggtgggtgggatgagtattctaaggcgcgtggaagaactctctt
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25 taaggaactctgcaaaatagcaccgtatcttcggtataaggtgtggttcgcttcgtattaggatttactccgaaagcgaa
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26 gaaacttacaacaaagagtccctcccgactgtttaccaaaaacacagcactctgctaactcgtaagaggatgtatagggt
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27 gtgacgcctgcccggtgctcgaaggttaattgatggggttagcattagcgaagctcttgatcgaagcccgagtaaacggc
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28 ggccgtaactataacggtcctaaggtagcgaaattccttgtcggttaaataccgacctgcatgaatggcgtaacgagatg
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29 ggagctgtctcaaagagggatccagtgaaattgtagtggaggtgaaaattcctcctacccgcggcaagacggaaagaccc
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30 cgtggacctttactacagcttgacactgctatttggataagaatgtgcaggataggtgggaggctttgagtatatgacgc
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31 cagttgtatatgagccattgttgagataccactctttcttatttgggtagctaaccagcttgagttatcctcaagtggga
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32 caatgtctggtgggtagtttgactggggcggtcgcctcccaaataataacggaggcttacaaaggttggctcagaacggt
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33 tggaaatcgttcgtagagtataaaggtataagccagcttaactgcaagacatacaagtcaagcagagacgaaagtcggtc
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34 ttagtgatccggtggttctgcgtggaagggccatcgctcaaaggataaaaggtaccccggggataacaggctgatctccc
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35 ccaagagctcacatcgacggggaggtttggcacctcgatgtcggctcatcgcatcctggggctggagcaggtcccaaggg
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36 tatggctgttcgccatttaaagcggtacgcgagctgggttcagaacgtcgtgagacagttcggtccctatctgccgtggg
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37 cgtaagaagattgaagagatttgaccctagtacgagaggaccgggttgaacaaaccactggtgtagctgttgttctgcca
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38 agagcatcgcagcgtagctaagtttggaaagg
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39 >NC_002163.1@23S_ribosomal_RNA:396449-399360
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40 agctactaagagcgaatggtggatgccttgactggtaaaggcgatgaaggacgtactagactgcgataagctacggggag
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41 ctgtcaagaagctttgatccgtagatttccgaatggggcaacccaatgtatagagatatacattacctatataggagcga
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42 acgaggggaattgaaacatcttagtaccctcaggaaaagaaatcaatagagattgcgtcagtagcggcgagcgaaagcgc
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43 aagagggcaaacccagtgcttgcactgggggttgtaggactgcaatgtgcaagagctgagtttagcagaacattctggaa
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44 agtatagccatagagggtgatagtcccgtatgcgaaaaacaaagcttagctagcagtatcctgagtagggcgggacacga
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45 ggaatcctgtctgaatccgggtcgaccacgatccaaccctaaatactaataccagatcgatagtgcacaagtaccgtgag
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46 ggaaaggtgaaaagaactgaggtgatcagagtgaaatagaacctgaaaccatttgcttacaatcattcagagcactatgt
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47 agcaatacagtgtgatggactgccttttgcataatgagcctgcgagttgtggtgtctggcaaggttaagcaaacgcgaag
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48 ccgtagcgaaagcgagtctgaatagggcgcttagtcagatgctgcagacccgaaacgaagtgatctatccatgagcaagt
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49 tgaagctagtgtaagaactagtggaggactgaacccataggcgttgaaaagccccgggatgacttgtggataggggtgaa
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50 aggccaatcaaacttcgtgatagctggttctctccgaaatatatttaggtatagcgttgtgtcgtaatataagggggtag
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51 agcactgaatgggctagggcatacaccaatgtaccaaaccctatcaaactccgaataccttatatgtaatcacagcagtc
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52 aggcggcgagtgataaaatccgtcgtcaagagggaaacaacccagactaccagctaaggtccctaaatcttacttaagtg
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53 gaaaacgatgtgaagttacttaaacaaccaggaggttggcttagaagcagccatcctttaaagaaagcgtaatagctcac
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54 tggtctagtgattttgcgcggaaaatataacggggctaaagtaagtaccgaagctgtagacttagtttactaagtggtag
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55 gagagcgttctatttgcgtcgaaggtataccggtaaggagtgctggagcgaatagaagtgagcatgcaggcatgagtagc
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56 gataattaatgtgagaatcattaacgccgtaaacccaaggtttcctacgcgatgctcgtcatcgtagggttagtcgggtc
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57 ctaagtcgagtccgaaaggggtagacgatggcaaattggttaatattccaataccaacattagtgtgcgatggaaggacg
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58 cttagggctaagggggctagcggatggaagtgctagtctaaggtcgtaggaggttatacaggcaaatccgtataacaata
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59 ctccgagaactgaaaggctttttgaagtcttcggatggatagaagaacccctgatgccgtcgagccaagaaaagtttcta
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60 agtttagctaatgttgcccgtaccgtaaaccgacacaggtgggtgggatgagtattctaaggcgcgtggaagaactctct
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61 ttaaggaactctgcaaaatagcaccgtatcttcggtataaggtgtggttagctttgtattaggatttactctgaaagcaa
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62 ggaaacttacaacaaagagtccctcccgactgtttaccaaaaacacagcactctgctaactcgtaagaggatgtataggg
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63 tgtgacgcctgcccggtgctcgaaggttaattgatggggttagcattagcgaagctcttgatcgaagcccgagtaaacgg
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64 cggccgtaactataacggtcctaaggtagcgaaattccttgtcggttaaataccgacctgcatgaatggcgtaacgagat
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65 gggagctgtctcaaagagggatccagtgaaattgtagtggaggtgaaaattcctcctacccgcggcaagacggaaagacc
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66 ccgtggacctttactacagcttgacactgctacttggataagaatgtgcaggataggtgggaggctttgagtatatgacg
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67 ccagttgtatatgagccattgttgagataccactctttcttatttgggtagctaaccagcttgagttatcctcaagtggg
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68 acaatgtctggtgggtagtttgactggggcggtcgcctcccaaataataacggaggcttacaaaggttggctcagaacgg
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69 ttggaaatcgttcgtagagtataaaggtataagccagcttaactgcaagacatacaagtcaagcagagacgaaagtcggt
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70 cttagtgatccggtggttctgtgtggaagggccatcgctcaaaggataaaaggtaccccggggataacaggctgatctcc
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71 cccaagagctcacatcgacggggaggtttggcacctcgatgtcggctcatcgcatcctggggctggagcaggtcccaagg
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72 gtatggctgttcgccatttaaagcggtacgcgagctgggttcagaacgtcgtgagacagttcggtccctatctgccgtgg
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73 gcgtaagaagattgaagagatttgaccctagtacgagaggaccgggttgaacaaaccactggtgtagctgttgttctgcc
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74 aagagcatcgcagcgtagctaagtttggaaaggataaacgctgaaagcatctaagcgtgaagccaactctaagatgaatc
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75 ttctctaagctctctagaagactactagtttgataggctgggtgtgtaatggatgaaagtcctttagctgaccagtacta
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76 atagagcgtttggcttatctttaataaagcat