# HG changeset patch
# User czlab
# Date 1526607148 14400
# Node ID 64429d5e9365d8882d960c978ecaa193e097583b
# Parent  14e7247c1fa01845294a48c39b9451b137cc38ec
Uploaded

diff -r 14e7247c1fa0 -r 64429d5e9365 fastq2collapse.xml
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/fastq2collapse.xml	Thu May 17 21:32:28 2018 -0400
@@ -0,0 +1,30 @@
+<tool id="fastq2collapse" name="Collapse exact PCR duplicates">
+	<description>in FASTQ</description>
+	<!--<command interpreter="perl">-->
+	<command>
+		fastq2collapse.pl -v  $input $output
+	</command>
+	<inputs>
+		<param type="data" format="fastq" name="input" label="Input FASTQ file (.gz file accepted)"/>
+	</inputs>
+
+	<outputs>
+		<data name="output" format="fastq" label="Collapse exact PCR duplicates on ${on_string}" />
+	</outputs>
+
+	<help>
+
+.. class:: infomark
+
+**What this tool does**
+
+This tool collapses exact duplicate sequences.
+
+It takes as input files in FASTQ format of filtered and trimmed reads and output files in FASTQ format in which exact PCR duplicates have been collapsed.
+
+
+
+
+	</help>
+</tool>
+