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comparison metaphlan_to_phyloxml.xml @ 5:73f082e9fa2d

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Set of improvements and fixes from Nicola Soranzo changeset: 9:c3dae016a3eb files: metaphlan.xml description: Update citation changeset: 8:f58b66b4e5fc files: metaphlan.xml description: Add select lists for -t and --tax_lev options Also some small fixes changeset: 7:94a2b29778b7 files: metaphlan_to_phyloxml.xml description: Clarify that only result of rel_ab analysis is accepted as input changeset: 6:b0eba028dee8 files: metaphlan.xml metaphlan_to_phyloxml.xml description: Fix whitespaces changeset: 5:4340075c8a93 files: tool_dependencies.xml description: Correct metaphlan clone URL to avoid a redirect changed metaphlan.xml changed metaphlan_to_phyloxml.xml changed tool_dependencies.xml
author nsegata
date Sun, 23 Dec 2012 18:46:23 +0100
parents 016f6375aadc
children
comparison
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4:80b22b31633f 5:73f082e9fa2d
1 <tool id="meta_to_phylo" name="MetaPhlAn to PhyloXML" version="1.0.0"> 1 <tool id="meta_to_phylo" name="MetaPhlAn to PhyloXML" version="1.0.0">
2 <description>Converter</description> 2 <description>converter</description>
3 <command interpreter="python"> 3 <command interpreter="python">metaphlan_to_phyloxml.py $input $output</command>
4 metaphlan_to_phyloxml.py $input $output 4 <inputs>
5 </command> 5 <param name="input" type="data" format="tabular" label="MetaPhlAn relative abundances"/>
6 <inputs> 6 </inputs>
7 <param name="input" type="data" format="tabular" label="Input MetaPhlAn File"/> 7 <outputs>
8 </inputs>
9 <outputs>
10 <data format="xml" name="output" label="${tool.name} on ${on_string}" /> 8 <data format="xml" name="output" label="${tool.name} on ${on_string}" />
11 </outputs> 9 </outputs>
12 <tests> 10 <tests>
13 </tests> 11 </tests>
14 <help> 12 <help>
15 MetaPhlAn to PhyloXML Converter 13 This tool converts the results of metagonome profiling performed with MetaPhlAn from tabular to PhyloXML format. The tool accepts as input only the result of rel_ab analysis (profiling in terms of relative abundaces), not reads_map or clade_profiles analysis.
16 </help> 14 </help>
17 </tool> 15 </tool>