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comparison tool_dependencies.xml @ 4:80b22b31633f

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Updated for MetaPhlAn v1.7 and tool_dependencies added for auto install
author Jim Johnson <jj@umn.edu>
date Thu, 11 Oct 2012 12:01:20 -0500
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children 73f082e9fa2d
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3:e88fa24fa837 4:80b22b31633f
1 <?xml version="1.0"?>
2 <tool_dependency>
3 <package name="metaphlan" version="1.7.0">
4 <install version="1.0">
5 <actions>
6 <action type="shell_command">hg clone http://bitbucket.org/nsegata/metaphlan</action>
7 <action type="move_directory_files">
8 <source_directory>.</source_directory>
9 <destination_directory>$INSTALL_DIR</destination_directory>
10 </action>
11 <action type="set_environment">
12 <environment_variable name="PATH" action="prepend_to">$INSTALL_DIR</environment_variable>
13 </action>
14 <action type="set_environment">
15 <environment_variable name="METAPHLAN_PATH" action="set_to">$INSTALL_DIR</environment_variable>
16 </action>
17
18 </actions>
19 </install>
20 <readme>
21 These links provide information for the metaphlan package:
22 http://huttenhower.sph.harvard.edu/metaphlan
23 https://groups.google.com/forum/#!forum/metaphlan-users
24 </readme>
25 </package>
26 </tool_dependency>
27