Mercurial > repos > dave > data_manager_fetch_index_maf

comparison data_manager_conf.xml @ 1:edf39ed96bc3 draft default tip

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"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_fetch_index_maf commit f8a19615cd097290a1239d4bb6b8eb52c9d73b03-dirty"
author dave
date Wed, 15 Jul 2020 15:50:54 -0400
parents de73b258a601
children
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0:de73b258a601 1:edf39ed96bc3
1 <?xml version="1.0"?> 1 <?xml version="1.0"?>
2 <data_managers tool_path="tools"> 2 <data_managers tool_path="tools">
3 <data_manager tool_file="data_manager_fetch_index_maf/data_manager/data_manager_fetch_and_index_maf.xml" id="data_manager_fetch_and_index_maf"> 3 <data_manager tool_file="data_manager_fetch_index_maf/data_manager/data_manager_fetch_and_index_maf.xml" id="data_manager_fetch_and_index_maf">
4 <data_table name="indexed_maf_files"> 4 <data_table name="maf_indexes">
5 <output> 5 <output>
6 <column name="name" /> 6 <column name="name" />
7 <column name="value" /> 7 <column name="value" />
8 <column name="indexed_for" /> 8 <column name="indexed_for" />
9 <column name="exists_in_maf" /> 9 <column name="exists_in_maf" />
10 <column name="path" output_ref="output" > 10 <column name="path" output_ref="output" >
11 <move type="directory" relativize_symlinks="True"> 11 <move type="directory" relativize_symlinks="True">
12 <target base="${GALAXY_DATA_MANAGER_DATA_PATH}">${dbkey}/align/${value}</target> 12 <target base="${GALAXY_DATA_MANAGER_DATA_PATH}">${dbkey}/align/${value}</target>
13 </move> 13 </move>
14 <value_translation>#echo ','.join([os.path.join($GALAXY_DATA_MANAGER_DATA_PATH, '%s' % dbkey, 'align', '%s' % $value, $filename) for filename in $path.split(',')])</value_translation> 14 <value_translation>#echo ','.join([os.path.join(${GALAXY_DATA_MANAGER_DATA_PATH}, '%s' % ${dbkey}, 'align', '%s' % ${value}, ${filename}) for filename in $path.split(',')])</value_translation>
15 <value_translation type="function">abspath</value_translation> 15 <value_translation type="function">abspath</value_translation>
16 </column> 16 </column>
17 </output> 17 </output>
18 </data_table> 18 </data_table>
19 </data_manager> 19 </data_manager>