Mercurial > repos > dave > genebed_maf_to_fasta

comparison test-data/maf_to_fasta-in1.bed @ 0:be26293ade92 draft

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"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/genebed_maf_to_fasta/ commit 8d55cabcec17915d959f672ecacfa851df1f4ca4-dirty"
author dave
date Fri, 24 Jul 2020 12:35:57 -0400
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comparison
equal deleted inserted replaced
-1:000000000000 0:be26293ade92
1 chr22 36937376 36938502 NM_000395.3_cds_13_0_chr22_36937377_f 0 +
2 chr22 37723184 37726503 NM_001039141.3_cds_6_0_chr22_37723185_f 0 +
3 chr22 37206546 37207803 NM_001051.5_cds_0_0_chr22_37206547_r 0 -
4 chr22 32190771 32191352 NM_001098527.3_cds_0_0_chr22_32190772_r 0 -
5 chr22 32358071 32358444 NM_001098535.1_cds_0_0_chr22_32358072_f 0 +
6 chr22 36265150 36266033 NM_001136540.1_cds_5_0_chr22_36265151_f 0 +
7 chr22 36265150 36266033 NM_001136541.1_cds_4_0_chr22_36265151_f 0 +
8 chr22 27982220 27983851 NM_001145418.1_cds_0_0_chr22_27982221_r 0 -
9 chr22 32190771 32191352 NM_001159545.2_cds_0_0_chr22_32190772_r 0 -
10 chr22 32190771 32191352 NM_001159546.2_cds_0_0_chr22_32190772_r 0 -
11 chr22 18918315 18918491 NM_001195226.2_cds_3_0_chr22_18918316_r 0 -
12 chr22 37206546 37207803 NM_001278687.2_cds_0_0_chr22_37206547_r 0 -
13 chr22 17108306 17109820 NM_001289905.1_cds_11_0_chr22_17108307_f 0 +
14 chr22 42692889 42693951 NM_001318038.2_cds_0_0_chr22_42692890_r 0 -
15 chr22 26026444 26027678 NM_001318245.2_cds_42_0_chr22_26026445_f 0 +
16 chr22 21634684 21635644 NM_001331066.1_cds_3_0_chr22_21634685_f 0 +
17 chr22 42141151 42141396 NM_001348386.3_cds_2_0_chr22_42141152_r 0 -
18 chr22 36265150 36266033 NM_001362927.2_cds_4_0_chr22_36265151_f 0 +
19 chr22 32190771 32191352 NM_001364982.1_cds_0_0_chr22_32190772_r 0 -
20 chr22 32190771 32191352 NM_001364983.1_cds_0_0_chr22_32190772_r 0 -
21 chr22 32190771 32191352 NM_001364984.1_cds_0_0_chr22_32190772_r 0 -
22 chr22 32190771 32191352 NM_001364985.1_cds_0_0_chr22_32190772_r 0 -
23 chr22 32190771 32191352 NM_001364986.1_cds_0_0_chr22_32190772_r 0 -
24 chr22 23573265 23573585 NM_001369906.1_cds_0_0_chr22_23573266_r 0 -
25 chr22 27796762 27800543 NM_002430.3_cds_1_0_chr22_27796763_r 0 -
26 chr22 36265150 36266033 NM_003661.4_cds_5_0_chr22_36265151_f 0 +
27 chr22 21030830 21031812 NM_004173.3_cds_3_0_chr22_21030831_r 0 -
28 chr22 42209650 42215305 NM_005650.3_cds_4_0_chr22_42209651_r 0 -
29 chr22 46256560 46263322 NM_006071.2_cds_0_0_chr22_46256561_r 0 -
30 chr22 32358158 32358444 NM_006604.2_cds_1_0_chr22_32358159_f 0 +
31 chr22 38080839 38081679 NM_013356.2_cds_1_0_chr22_38080840_r 0 -
32 chr22 46363995 46364251 NM_014246.3_cds_1_0_chr22_46363996_r 0 -
33 chr22 46533626 46537170 NM_014246.3_cds_34_0_chr22_46533627_r 0 -
34 chr22 17108306 17109820 NM_014339.7_cds_12_0_chr22_17108307_f 0 +
35 chr22 36141199 36142058 NM_014349.3_cds_0_0_chr22_36141200_r 0 -
36 chr22 49883662 49887178 NM_014838.3_cds_1_0_chr22_49883663_f 0 +
37 chr22 17817310 17819129 NM_015241.3_cds_6_0_chr22_17817311_r 0 -
38 chr22 18918315 18918491 NM_016335.5_cds_3_0_chr22_18918316_r 0 -
39 chr22 42692889 42693951 NM_017436.7_cds_0_0_chr22_42692890_r 0 -
40 chr22 37655271 37655684 NM_018957.5_cds_17_0_chr22_37655272_f 0 +
41 chr22 23573265 23573585 NM_020070.4_cds_0_0_chr22_23573266_r 0 -
42 chr22 29441541 29442122 NM_021026.2_cds_1_0_chr22_29441542_f 0 +
43 chr22 29488848 29490703 NM_021076.4_cds_3_0_chr22_29488849_f 0 +
44 chr22 35726210 35727194 NM_030642.1_cds_2_0_chr22_35726211_f 0 +
45 chr22 36191074 36191912 NM_030643.4_cds_0_0_chr22_36191075_r 0 -
46 chr22 36141199 36142058 NM_030644.2_cds_0_0_chr22_36141200_r 0 -
47 chr22 17119390 17121127 NM_031890.4_cds_0_0_chr22_17119391_r 0 -
48 chr22 26026444 26027678 NM_032608.7_cds_42_0_chr22_26026445_f 0 +
49 chr22 22514001 22515630 NM_080740.5_cds_0_0_chr22_22514002_r 0 -
50 chr22 50546243 50549951 NM_138433.5_cds_0_0_chr22_50546244_f 0 +
51 chr22 36265150 36266033 NM_145343.2_cds_6_0_chr22_36265151_f 0 +
52 chr22 36141199 36142058 NM_145639.2_cds_0_0_chr22_36141200_r 0 -
53 chr22 36141199 36142058 NM_145640.2_cds_0_0_chr22_36141200_r 0 -
54 chr22 36191074 36191912 NM_145660.2_cds_0_0_chr22_36191075_r 0 -
55 chr22 21634684 21635266 NM_152612.3_cds_3_0_chr22_21634685_f 0 +
56 chr22 31712082 31717291 NM_173566.3_cds_5_0_chr22_31712083_r 0 -
57 chr22 42209650 42215305 NM_181492.2_cds_3_0_chr22_42209651_r 0 -
58 chr22 36937376 36938502 XM_005261340.3_cds_13_0_chr22_36937377_f 0 +
59 chr22 27982220 27983851 XM_005261405.2_cds_0_0_chr22_27982221_r 0 -
60 chr22 42692889 42693951 XM_005261644.2_cds_0_0_chr22_42692890_r 0 -
61 chr22 42692889 42693951 XM_005261646.4_cds_0_0_chr22_42692890_r 0 -
62 chr22 42209650 42215305 XM_005261722.3_cds_4_0_chr22_42209651_r 0 -
63 chr22 22646311 22646521 XM_005261815.3_cds_1_0_chr22_22646312_f 0 +
64 chr22 22646311 22646521 XM_005261818.2_cds_1_0_chr22_22646312_f 0 +
65 chr22 42209650 42215305 XM_006724313.3_cds_4_0_chr22_42209651_r 0 -
66 chr22 35726271 35727194 XM_006724321.4_cds_3_0_chr22_35726272_f 0 +
67 chr22 46363995 46364251 XM_006724383.3_cds_1_0_chr22_46363996_r 0 -
68 chr22 46533626 46537170 XM_006724383.3_cds_34_0_chr22_46533627_r 0 -
69 chr22 32190771 32191352 XM_011529826.2_cds_0_0_chr22_32190772_r 0 -
70 chr22 32190771 32191352 XM_011529827.3_cds_0_0_chr22_32190772_r 0 -
71 chr22 32190771 32191352 XM_011529828.2_cds_0_0_chr22_32190772_r 0 -
72 chr22 32190771 32191352 XM_011529832.2_cds_0_0_chr22_32190772_r 0 -
73 chr22 42209650 42215305 XM_011530353.2_cds_4_0_chr22_42209651_r 0 -
74 chr22 42209650 42215305 XM_011530354.2_cds_3_0_chr22_42209651_r 0 -
75 chr22 26026444 26027678 XM_011530458.2_cds_43_0_chr22_26026445_f 0 +
76 chr22 26026444 26027678 XM_011530459.2_cds_43_0_chr22_26026445_f 0 +
77 chr22 26026444 26027678 XM_011530460.2_cds_42_0_chr22_26026445_f 0 +
78 chr22 26026444 26027678 XM_011530461.2_cds_43_0_chr22_26026445_f 0 +
79 chr22 26026444 26027678 XM_011530464.2_cds_43_0_chr22_26026445_f 0 +
80 chr22 26026444 26027678 XM_011530465.2_cds_42_0_chr22_26026445_f 0 +
81 chr22 36265199 36266033 XM_011530478.2_cds_5_0_chr22_36265200_f 0 +
82 chr22 46533626 46537170 XM_011530553.1_cds_16_0_chr22_46533627_r 0 -
83 chr22 46363995 46364251 XM_011530554.2_cds_1_0_chr22_46363996_r 0 -
84 chr22 46363995 46364251 XM_011530555.2_cds_1_0_chr22_46363996_r 0 -
85 chr22 17119390 17121127 XM_011546124.2_cds_1_0_chr22_17119391_r 0 -
86 chr22 32358153 32358611 XM_017028534.1_cds_1_0_chr22_32358154_f 0 +
87 chr22 35726284 35727194 XM_017028945.2_cds_2_0_chr22_35726285_f 0 +
88 chr22 26026444 26027678 XM_017029012.1_cds_43_0_chr22_26026445_f 0 +
89 chr22 26026444 26027678 XM_017029013.1_cds_43_0_chr22_26026445_f 0 +
90 chr22 26026444 26027678 XM_017029014.1_cds_43_0_chr22_26026445_f 0 +
91 chr22 26026444 26027678 XM_017029015.1_cds_42_0_chr22_26026445_f 0 +
92 chr22 26026444 26027678 XM_017029016.1_cds_31_0_chr22_26026445_f 0 +
93 chr22 26026444 26027678 XM_017029017.1_cds_41_0_chr22_26026445_f 0 +
94 chr22 18846931 18848320 XM_017029167.2_cds_0_0_chr22_18846932_f 0 +
95 chr22 23394179 23394792 XM_017029168.1_cds_3_0_chr22_23394180_f 0 +
96 chr22 23394222 23394792 XM_017029169.1_cds_2_0_chr22_23394223_f 0 +
97 chr22 50433133 50434498 XM_017029177.1_cds_0_0_chr22_50433134_r 0 -
98 chr22 50433133 50434498 XM_017029178.1_cds_0_0_chr22_50433134_r 0 -
99 chr22 36191074 36191842 XM_024452274.1_cds_0_0_chr22_36191075_r 0 -
100 chr22 49883662 49887178 XM_024452312.1_cds_1_0_chr22_49883663_f 0 +