Mercurial > repos > dave > genebed_maf_to_fasta
diff test-data/maf_to_fasta-in1.txt @ 0:be26293ade92 draft
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/genebed_maf_to_fasta/ commit 8d55cabcec17915d959f672ecacfa851df1f4ca4-dirty"
| author | dave |
|---|---|
| date | Fri, 24 Jul 2020 12:35:57 -0400 |
| parents | |
| children |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/maf_to_fasta-in1.txt Fri Jul 24 12:35:57 2020 -0400 @@ -0,0 +1,45 @@ +#name chrom strand txStart txEnd cdsStart cdsEnd exonCount exonStarts exonEnds proteinID alignID +ENST00000331437.4 chr22 - 17116296 17121360 17119390 17121127 1 17116296, 17121360, Q9BXQ6 uc002zmb.4 +ENST00000441493.7 chr22 - 17787648 18024561 17790731 17906812 32 17787648,17790997,17791201,17808843,17810702,17816689,17817310,17821426,17822029,17822946,17827643,17831853,17841821,17864898,17865923,17871836,17885877,17887169,17887322,17889033,17891484,17893807,17895283,17896245,17896723,17899447,17900841,17901877,17902630,17904631,17906548,18024280, 17790916,17791071,17791301,17808937,17810813,17816784,17819129,17821509,17822170,17823060,17827781,17832107,17842017,17864986,17866012,17872023,17886051,17887232,17887435,17889230,17891632,17893904,17895410,17896361,17896981,17899548,17900997,17901979,17902747,17904839,17906886,18024561, Q7RTP6 uc002zng.6 +ENST00000610940.4 chr22 - 18912776 18936553 18913174 18936287 15 18912776,18913437,18916889,18918315,18919450,18919705,18921341,18922324,18922816,18923114,18925050,18925687,18930989,18936014,18936389, 18913362,18913526,18916988,18918491,18919597,18919798,18921423,18922404,18922933,18923179,18925200,18925722,18931198,18936327,18936553, A0A087WWM6 uc002zok.5 +ENST00000334029.6 chr22 - 18912781 18936451 18913174 18931147 14 18912781,18913437,18916889,18918315,18919450,18919705,18921341,18922324,18922816,18923114,18925050,18925687,18930989,18936389, 18913362,18913526,18916988,18918491,18919597,18919798,18921423,18922404,18922933,18923179,18925200,18925722,18931198,18936451, E7EQL6 uc002zol.5 +ENST00000382932.3 chr22 - 21028717 21032561 21029054 21031812 5 21028717,21029335,21029710,21030830,21032530, 21029230,21029444,21030351,21031852,21032561, O43246 uc002zud.4 +ENST00000607942.5 chr22 + 21632715 21635802 21633181 21635644 4 21632715,21633119,21634021,21634684, 21632827,21633253,21634570,21635802, Q8IYX3 uc011aih.2 +ENST00000292779.4 chr22 + 21632759 21637329 21633181 21637070 5 21632759,21633119,21634021,21634684,21636431, 21632827,21633253,21634570,21635266,21637329, Q8IYX3 uc002zve.5 +ENST00000302097.3 chr22 - 22513735 22520270 22514001 22515630 2 22513735,22520088, 22515701,22520270, P59817 uc032qhw.1 +ENST00000330377.3 chr22 - 23573124 23580290 23573265 23580190 3 23573124,23574966,23579984, 23573585,23575082,23580290, P15814 uc002zxd.5 +ENST00000335473.11 chr22 + 25742152 26031041 25761092 26027678 44 25742152,25760983,25763230,25768114,25770109,25770871,25772333,25777582,25780055,25781733,25785427,25797952,25823504,25826408,25828775,25832916,25835295,25843734,25846099,25847429,25851469,25868319,25874285,25876188,25877958,25890755,25891303,25895155,25898306,25902612,25903630,25908321,25910945,25921256,25946136,25947711,25950366,25952285,25955178,25992362,26003264,26004717,26026444,26030442, 25742293,25761131,25763389,25769428,25770176,25770984,25772510,25777781,25780198,25781834,25785491,25798097,25823678,25826499,25828968,25832997,25835443,25843894,25846283,25847652,25851579,25868385,25874414,25876332,25878048,25890875,25891412,25895280,25898461,25902736,25903831,25908432,25911050,25921409,25946250,25947828,25950450,25952423,25955364,25992493,26003309,26004855,26027690,26031041, Q8IUG5 uc003abz.1 +ENST00000407587.6 chr22 + 25742233 26030644 25761092 26027678 44 25742233,25760983,25763230,25768114,25770109,25770871,25772333,25777582,25780055,25781733,25785427,25797952,25823504,25826408,25828775,25832916,25835292,25843734,25846099,25847429,25851469,25868319,25874285,25876188,25877958,25890755,25891303,25895155,25898306,25902612,25903630,25908321,25910945,25921256,25946136,25947711,25950366,25952285,25955178,25992362,26003264,26004717,26026444,26030442, 25742293,25761131,25763389,25769428,25770176,25770984,25772510,25777781,25780198,25781834,25785491,25798097,25823678,25826499,25828968,25832997,25835443,25843894,25846283,25847652,25851579,25868385,25874414,25876332,25878048,25890875,25891412,25895280,25898461,25902736,25903831,25908432,25911050,25921409,25946250,25947828,25950450,25952423,25955364,25992493,26003309,26004855,26027690,26030644, Q8IUG5 uc062cna.1 +ENST00000302326.5 chr22 - 27748276 27801756 27750914 27800543 2 27748276,27796762, 27751096,27801756, Q10571 uc003adj.4 +ENST00000397906.6 chr22 - 27978013 28679865 27982220 28679723 23 27978013,27985248,27989877,27990788,27992586,27993286,27996134,27998539,28001373,28014247,28030225,28094079,28096189,28098914,28101170,28105278,28107061,28163091,28296197,28297579,28306495,28629551,28679621, 27983851,27985356,27990007,27990812,27992663,27993518,27996259,27999260,28001553,28014392,28030366,28094245,28096408,28099044,28101280,28105802,28108403,28163599,28296328,28297852,28306643,28629830,28679865, Q96AY4 uc003adp.4 +ENST00000354373.2 chr22 + 29438582 29442455 29438791 29442122 2 29438582,29441541, 29439164,29442455, O75677 uc003afn.3 +ENST00000310624.7 chr22 + 29480217 29491390 29480262 29490703 4 29480217,29483374,29485722,29488848, 29481145,29483574,29485847,29491390, P12036 uc003afo.5 +ENST00000327423.11 chr22 - 31681346 31750132 31685526 31738860 9 31681346,31688155,31701655,31703549,31704654,31712082,31725537,31738386,31749992, 31685803,31688227,31701762,31703721,31704726,31717291,31725610,31738911,31750132, Q5THK1 uc003alp.6 +ENST00000248983.8 chr22 - 32190434 32202451 32190771 32202451 4 32190434,32192901,32194344,32202332, 32191352,32193192,32194490,32202451, O75678 uc062dmr.1 +ENST00000626996.2 chr22 - 32190437 32202571 32193080 32202451 3 32190437,32192901,32202332, 32191352,32193192,32202571, O75678 uc062dms.1 +ENST00000400237.2 chr22 - 32190437 32203477 32190771 32202451 5 32190437,32192901,32194344,32202332,32202640, 32191352,32193192,32194490,32202550,32203477, O75678 uc003amg.4 +ENST00000652607.1 chr22 - 32190541 32205001 32190771 32202451 5 32190541,32192901,32194344,32202332,32204706, 32191352,32193192,32194490,32202550,32205001, O75678 uc287jbr.1 +ENST00000397468.5 chr22 + 32354884 32361161 32358158 32360832 3 32354884,32358153,32360251, 32354897,32358444,32361161, O75679 uc010gwn.3 +ENST00000249007.4 chr22 + 32357866 32361161 32358071 32360832 2 32357866,32360251, 32358444,32361161, O75679 uc003amj.3 +ENST00000249044.2 chr22 + 35717871 35729483 35717871 35728898 5 35717871,35720567,35726210,35728722,35729353, 35717926,35720654,35727194,35728904,35729483, Q9BWW9 uc003aof.4 +ENST00000349314.6 chr22 - 36140329 36160929 36141199 36160891 3 36140329,36145472,36160668, 36142058,36145599,36160929, O95236 uc003aot.4 +ENST00000424878.3 chr22 - 36141026 36149126 36141199 36149055 3 36141026,36145472,36149045, 36142058,36145599,36149126, O95236 uc062dsb.1 +ENST00000352371.5 chr22 - 36189128 36204833 36191074 36202036 5 36189128,36195310,36199329,36201992,36204627, 36191912,36195437,36199376,36202055,36204833, Q9BPW4 uc032qnf.2 +ENST00000616056.4 chr22 - 36189128 36204840 36191074 36201734 6 36189128,36195310,36199329,36201699,36201992,36204627, 36191912,36195437,36199376,36201888,36202055,36204840, Q9BPW4 uc032qne.2 +ENST00000422706.5 chr22 + 36253070 36267530 36254955 36266033 6 36253070,36254897,36257082,36257318,36261595,36265150, 36253219,36254999,36257136,36257407,36261722,36267530, O14791 uc011amp.3 +ENST00000426053.5 chr22 + 36253070 36267530 36254955 36266033 5 36253070,36254936,36257318,36261595,36265150, 36253219,36254999,36257407,36261722,36267530, O14791 uc011amq.3 +ENST00000319136.8 chr22 + 36253077 36267521 36253962 36266033 7 36253077,36253837,36254936,36257082,36257318,36261595,36265150, 36253219,36253991,36254999,36257136,36257407,36261722,36267521, O14791 uc003ape.4 +ENST00000397279.8 chr22 + 36253140 36267083 36254955 36266033 7 36253140,36254936,36257082,36257318,36261595,36265150,36266888, 36253219,36254999,36257136,36257407,36261722,36266107,36267083, O14791 uc062dtj.1 +ENST00000403662.8 chr22 + 36913627 36940439 36922207 36938502 14 36913627,36922035,36923243,36925986,36929401,36929638,36930374,36930672,36932764,36933831,36935350,36935629,36936548,36937376, 36913677,36922283,36923367,36926177,36929559,36929807,36930510,36930830,36932904,36933994,36935441,36935687,36936652,36940439, P32927 uc003aqa.6 +ENST00000610913.2 chr22 - 37204236 37212477 37206546 37207803 2 37204236,37211824, 37207839,37212477, P32745 uc032qnp.3 +ENST00000617123.1 chr22 - 37206479 37210965 37206546 37207803 2 37206479,37210544, 37207839,37210965, P32745 uc021wos.3 +ENST00000649765.1 chr22 + 37639668 37656119 37639787 37655684 18 37639668,37641125,37641373,37642538,37642894,37643097,37643643,37644636,37644869,37645364,37646817,37647266,37647440,37648318,37650151,37650541,37653778,37655271, 37639846,37641168,37641478,37642615,37643006,37643174,37643788,37644705,37644960,37645510,37646929,37647348,37647521,37648435,37650249,37650725,37653873,37656119, Q9Y3L3 uc285thz.1 +ENST00000644935.1 chr22 + 37697047 37776556 37701365 37772762 24 37697047,37697587,37701305,37710426,37713209,37715762,37723184,37733297,37734398,37738641,37740894,37751771,37754876,37755100,37755549,37757612,37759153,37765669,37768073,37769027,37769261,37771649,37772600,37773782, 37697089,37697696,37701479,37710566,37713411,37715934,37726503,37733412,37735442,37738719,37741032,37751828,37754984,37755190,37755659,37758138,37759264,37765817,37768176,37769187,37769375,37771736,37772764,37776556, Q9H2D6 uc285tid.1 +ENST00000320521.9 chr22 - 38078133 38083142 38078387 38082873 5 38078133,38080839,38081888,38082659,38083041, 38078704,38081679,38082032,38082881,38083142, O95907 uc003auu.4 +ENST00000359486.7 chr22 - 42160012 42215442 42168652 42215305 5 42160012,42168608,42169846,42179608,42209650, 42161358,42168736,42169896,42179702,42215442, W5ZR30 uc003bcj.3 +ENST00000335626.8 chr22 - 42161055 42215440 42161340 42215305 4 42161055,42169846,42179608,42209650, 42161358,42169896,42179702,42215440, Q9UGU0 uc003bck.3 +ENST00000642412.2 chr22 - 42692120 42720870 42692889 42693951 3 42692120,42695490,42720796, 42693997,42695631,42720870, Q9NPC4 uc285tjf.2 +ENST00000249005.3 chr22 - 42692121 42695633 42692889 42693951 2 42692121,42695490, 42693997,42695633, Q9NPC4 uc062ewl.2 +ENST00000253255.7 chr22 - 46255662 46263343 46256560 46263322 1 46255662, 46263343, Q9NTG1 uc003bhh.5 +ENST00000262738.7 chr22 - 46360833 46537170 46363177 46537170 35 46360833,46363995,46364511,46365230,46365585,46366385,46366992,46367728,46369178,46369691,46372882,46377060,46378590,46380787,46381845,46384542,46386401,46389289,46390391,46391185,46391632,46394141,46396604,46397673,46398523,46399716,46408995,46409754,46410397,46411601,46433392,46436173,46439188,46463706,46533626, 46363187,46364251,46364736,46365380,46365689,46366480,46367118,46367855,46369258,46369804,46373057,46377261,46378717,46380955,46382050,46384686,46386585,46389499,46390486,46391287,46391816,46394262,46396746,46397848,46398637,46399902,46409162,46409880,46410561,46411759,46433481,46436289,46439411,46464345,46537170, Q9NYQ6 uc003bhw.1 +ENST00000216268.6 chr22 + 49853843 49890080 49883662 49887178 2 49853843,49883333, 49853989,49890080, O75132 uc003bix.4