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comparison test-data/chrM.maf @ 0:d38f317fa9d4 draft default tip

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author dave
date Fri, 10 Jul 2020 16:05:40 -0400
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-1:000000000000 0:d38f317fa9d4
1 ##maf version=1 scoring=multiz.v7
2 # multiz.v7 R=10 M=0 /cluster/bluearc/hg17/multiz.2004-07-13/danRer1/chrM.maf /cluster/bluearc/hg17/multiz.2004-07-13/panTro1mm5rn3canFam1galGal2fr1/chrM.maf -
3 # multiz.v7 R=10 M=0 /cluster/bluearc/hg17/multiz.2004-07-13/fr1/chrM.maf /cluster/bluearc/hg17/multiz.2004-07-13/panTro1mm5rn3canFam1galGal2/chrM.maf -
4 # multiz.v7 R=10 M=0 /cluster/bluearc/hg17/multiz.2004-07-13/galGal2/chrM.maf /cluster/bluearc/hg17/multiz.2004-07-13/panTro1mm5rn3canFam1/chrM.maf -
5 # multiz.v7 R=10 M=0 /cluster/bluearc/hg17/multiz.2004-07-13/canFam1/chrM.maf /cluster/bluearc/hg17/multiz.2004-07-13/panTro1mm5rn3/chrM.maf -
6 # multiz.v7 R=10 M=0 /cluster/bluearc/hg17/multiz.2004-07-13/rn3/chrM.maf /cluster/bluearc/hg17/multiz.2004-07-13/panTro1mm5/chrM.maf -
7 # multiz.v7 R=10 M=0 /cluster/bluearc/hg17/multiz.2004-07-13/mm5/chrM.maf /cluster/bluearc/hg17/multiz.2004-07-13/panTro1/chrM.maf -
8 a score=373.0
9 s hg17.chrM 10 4 + 16571 CTAT
10 s mm5.chrUn_random 29351899 4 + 102265694 CTAT
11
12 a score=8367.0
13 s hg17.chrM 14 46 + 16571 CACCCTATTAACCACTCACGGGAG--CTCTCCATGCATTTGGTATTTT
14 s panTro1.chr13 3552480 47 + 134309081 CACCCTATTAACCAGTCACGGGAGGACTGT-CATGCATTTGGTATTTT
15 s mm5.chrUn_random 29351903 47 + 102265694 CACTCTATTAACCAGTCATGGGAGCATGAT-CATGAATTTGGTATTTT
16
17 a score=11228.0
18 s hg17.chrM 60 133 + 16571 ---CGTCTGGGGGGTGTGCACGCGAT-----AGCATTGCGAGACGCTGGAGCC-----GGAGCACCCTATGTCGCAGTATCTGTCTTTGATTCCTGCCTCATTCTATTATTTA--TCGCACCTACGTTCAATATTACAGGCGAACATA
19 s panTro1.chr6 29890008 133 + 161576975 ---CGTCTGGGGGGTGTGCACGCGAT-----AGCATTGCGAAACGCTGGCCCC-----GGAGCACCCTATGTCGCAGTATCTGTCTTTGATTCCTGCCCCATTCCATTATTTA--TCGCACCTACGTTCAATATTACGAGCGAGCATG
20 s mm5.chrUn_random 29351950 137 + 102265694 TAACTTTTAGGA-------ATGCTATCACTCACCATTGCAGAAGGCCTGGTCCCCTCTGAATCAGC---TGTAGACGAACTCGGATTGGATTTCTGCCAAA-TCAATTGTAGAAGCTGAGCTTATATTGAATATTCTAACCTCGCATA
21
22 a score=-296.0
23 s hg17.chrM 193 11 + 16571 CCTACTAAAGT
24 s panTro1.chr6 29890141 11 + 161576975 TTAACCAAGGT
25 s mm5.chrUn_random 29352087 11 + 102265694 ACAACCATAAG
26 s galGal2.chrM 851 11 + 16775 CCCGGTAAATG
27
28 a score=311.0
29 s hg17.chrM 204 2 + 16571 GT
30 s mm5.chrUn_random 29352098 2 + 102265694 AT
31 s galGal2.chrM 862 2 + 16775 GT
32
33 a score=9848.0
34 s hg17.chrM 206 33 + 16571 GTTAATTAATTAATGCTTGTAGGACATAATAAT
35 s panTro1.chr13 3552675 33 + 134309081 GTTAATTAATTCATGCTTGAAAGACATAACAAT
36 s mm5.chrUn_random 29352100 29 + 102265694 ----GTTAATTCATGCTTGAAGGACATAATAAT
37 s galGal2.chrM 864 33 + 16775 GCTATTTAGTGAATGCTTGTCGGACATATTTTT
38
39 a score=5.0
40 s hg17.chrM 239 2 + 16571 AA
41 s panTro1.chr6 29890187 2 + 161576975 AG
42 s galGal2.chrM 897 2 + 16775 AT
43
44 a score=-369.0
45 s hg17.chrM 239 2 + 16571 AA-
46 s galGal2.chrM 897 2 + 16775 -AT
47
48 a score=1146.0
49 s hg17.chrM 241 2 + 16571 CA
50 s panTro1.chr6 29890189 2 + 161576975 CA
51 s mm5.chrUn_random 29352129 2 + 102265694 CA
52 s galGal2.chrM 899 2 + 16775 CA
53
54 a score=-73.0
55 s hg17.chrM 243 16 + 16571 ATTGA-ATGTCTGCACA
56 s mm5.chrUn_random 29352131 17 + 102265694 ATAGACACATATGCACA
57 s galGal2.chrM 901 9 + 16775 --------ATTTTCACT
58
59 a score=-48.0
60 s hg17.chrM 259 14 + 16571 ---GCCGCTTTCCACAC
61 s panTro1.chr6 29890206 14 + 161576975 ---GCCGCTTTTCACAC
62 s mm5.chrUn_random 29352148 7 + 102265694 ----------ATCACCT
63 s galGal2.chrM 910 17 + 16775 TCCTCTATTTTCTTCAC
64
65 a score=-3812.0
66 s hg17.chrM 273 28 + 16571 AGACATCATAACAAAAAA----------TTTCCACCAA
67 s panTro1.chr6 29890220 27 + 161576975 CAACATCATAACAAAAA-----------TTTCCGCAAA
68 s mm5.chrUn_random 29352155 38 + 102265694 ACCCTTATTTTCAAGAACTATTTATGATTTAACTCACA
69 s canFam1.chrX 31796412 23 - 126913094 AGACATTATATTAACTAA---------------ACCAA
70 s galGal2.chrM 927 22 + 16775 ------AAAACTAGGAAA----------TTCACCACAA
71
72 a score=1590.0
73 s hg17.chrM 301 35 + 16571 ACCCCCCCCTCCCCCCGCTTCTGGCCACAGCAC--------TT
74 s panTro1.chr6 29890247 33 + 161576975 GCCCCCC--TCCCCCCACTTCTGGCCACAGCAC--------TC
75 s mm5.chrUn_random 29352193 39 + 102265694 ACCCCCC----CCAACATCTCTGACTTTATCATGGACATAGGT
76 s canFam1.chrX 31796435 33 - 126913094 ACCCCCTCTACCCCCCA--TAAACTTATATTAT--------TT
77
78 a score=-6005.0
79 s hg17.chrM 336 91 + 16571 A-AACACATCT--------------CTGCCAAACCCCAAAAA-CAAAGAAC-----CCTA---ACAC-CAGCCT-----AACCAGATTTC--AAATTTTAT---CTTTAGGC-GGTATGCACTTTTA
80 s panTro1.chr6 29890280 92 + 161576975 A-AACACATCT--------------CTGCCAAACCCCAAAAAATAAAGAAC-----CCTA---ACAT-CAGCCC-----AACCAGATCTC--AAATTTCAT---CTTTTGGC-GGTATGCACTTTTA
81 s mm5.chrUn_random 29352232 86 + 102265694 A-AATATGCAC--------------TTGTGAAAACCCCAAGA-----GA--------CTA---AAATGCAACCC-----AGTCAGAGCCCAAAAAAGTTAT---ATTTTAAT-CATGAATA-TCCCA
82 s canFam1.chrX 31796468 112 - 126913094 ACAATATACCTATTTGTTTTGTGTCCCGCCAAACCCCAAAAA--CAGGA--------CTAAGTAAATGTAGCACTCATAAGCCATGTCT---AAATTTCATACGATTATAAC-TCTAGTTA-ATTTA
83 s galGal2.chrM 988 96 + 16775 A-AAAACATTT--------------TTTAAAAAACTAAATTACATACAAACTACCGCATA---AAAT-CCCTCA-----AACTATACA----AACGTTTAT---CGTATAATATATATACATTATTG
84
85 a score=583.0
86 s hg17.chrM 427 38 + 16571 ACAGTCACCCCCCAACTAACACATTATTTTCCC-----CTCCC
87 s panTro1.chr6 29890372 35 + 161576975 ACAGTCACCCCTCAACTAACATATCAT---CCC-----CCTCA
88 s mm5.chrUn_random 29352318 43 + 102265694 ACAACTACCCCTTGATTGATATAAAATTTTCCCAAAAATCTCA
89 s canFam1.chrX 31796580 15 - 126913094 ACA-----------------AAATAAT-----------TTCCT
90
91 a score=-3742.0
92 s hg17.chrM 465 34 + 16571 A-----CTCCCATA-----CTACTAATCTC---ATCAATACAACCCC----
93 s panTro1.chr6 29890407 34 + 161576975 A-----CTCCTATT-----CTACTAGTCCC---ACCAATGCAACCCC----
94 s mm5.chrUn_random 29352361 44 + 102265694 AGATATCTACCAAATAAGCCTCCATATCTA---ATAAATACAGTAAC----
95 s canFam1.chrX 31796595 37 - 126913094 A-----CGCCTAAA-----TCTGCAATCTATCTATAGATAGGACTTC----
96 s galGal2.chrM 1107 38 + 16775 A-----CTCCACTA-----CCAAAACCATC---ATTAAAACAAAAATTTAC
97
98 a score=-3187.0
99 s hg17.chrM 499 23 + 16571 C----GCCCATCCTA--CCCAGCACACAC
100 s panTro1.chr6 29890441 24 + 161576975 C---TACCCACCCTA--CCCAGCACAGAC
101 s mm5.chrUn_random 29352405 23 + 102265694 TAGATTTTCACCCTAATACTAGT------
102 s canFam1.chrX 93613525 23 + 126913094 ----CACCCCTTCCA--TTCAACTCACAA
103 s galGal2.chrM 1145 23 + 16775 ----ATGCCACTTAA--CTCCCCTCACAA
104
105 a score=-6370.0
106 s hg17.chrM 522 50 + 16571 ACACCGCTGC-----TAACCCC------------------------ATACCCCGAACCAACCAAACCCCA-------AAGACACCC--
107 s panTro1.chr9 125919315 50 - 136640551 ACACCGCTGC-----TAGCCCC------------------------ATACCCCGAGCCAACCAAACCCCA-------AAGACACCC--
108 s mm5.chrUn_random 29352428 83 + 102265694 ATAATGCCTTGAATATAACCCTTTGAAAGCACTACCCTAGTGCATGACACTCTAAATCAACTATTCCCTAA---TATAAGAAACCC--
109 s canFam1.chrX 93613548 52 + 126913094 ----------AAATCCAATCCC------------------------ACATTCTCATCAACATAATATATAACACCATAAAACACCT--
110 s galGal2.chrM 1168 45 + 16775 --ACAATCGT-----TATTT--------------------------ATATTGTTAATTAGCAAACAC----------AAAACCCGCCT
111
112 a score=345.0
113 s hg17.chrM 572 3 + 16571 CCC
114 s panTro1.chr9 125919365 3 - 136640551 CAT
115 s mm5.chrUn_random 29352511 3 + 102265694 CCT
116 s galGal2.chrM 1213 3 + 16775 TCT
117
118 a score=91.0
119 s hg17.chrM 575 1 + 16571 A
120 s galGal2.chrM 1216 1 + 16775 A
121
122 a score=-31.0
123 s hg17.chrM 575 1 + 16571 A
124 s mm5.chrUn_random 29352629 1 + 102265694 G
125
126 a score=91.0
127 s hg17.chrM 575 1 + 16571 A
128 s panTro1.chr9 125919368 1 - 136640551 A
129
130 a score=531.0
131 s hg17.chrM 576 2 + 16571 CA
132 s panTro1.chr9 31868387 2 - 136640551 CA
133 s mm5.chrUn_random 29352630 2 + 102265694 CA
134 s galGal2.chrM 1217 2 + 16775 CC
135
136 a score=1627.0
137 s hg17.chrM 578 4 + 16571 GTTT
138 s panTro1.chr9 31868389 4 - 136640551 GTTA
139 s mm5.chrUn_random 29352632 4 + 102265694 GTTA
140 s galGal2.chrM 1219 4 + 16775 ACTA
141 s fr1.chrUn 320907090 4 + 349519338 GCTA
142
143 a score=11543.0
144 s hg17.chrM 582 12 + 16571 ATGTAGCTTACC
145 s panTro1.chr9 31868393 12 - 136640551 ATGTAGCTTAAT
146 s mm5.chrM 4 12 + 16299 ATGTAGCTTAAT
147 s canFam1.chrM 4 12 + 16727 ATGTAGCTTAAT
148 s galGal2.chrM 1231 12 + 16775 CCATAGCTTAAC
149 s fr1.chrUn 320907094 12 + 349519338 GCGTAGCTTAAC
150
151 a score=-20.0
152 s hg17.chrM 594 5 + 16571 TCCTC
153 s fr1.chrUn 320907106 1 + 349519338 ----C
154
155 a score=-3855.0
156 s hg17.chrM 594 4 + 16571 TCCT
157 s panTro1.chr9 31868405 4 - 136640551 TATT
158 s mm5.chrM 16 2 + 16299 AA--
159 s canFam1.chrM 16 4 + 16727 TAAT
160 s galGal2.chrM 1243 3 + 16775 CCA-
161
162 a score=0.0
163 s hg17.chrM 598 1 + 16571 C
164
165 a score=38.0
166 s hg17.chrM 598 1 + 16571 C
167 s panTro1.chr9 31868409 1 - 136640551 T
168 s mm5.chrM 18 1 + 16299 C
169
170 a score=100.0
171 s hg17.chrM 598 1 + 16571 C
172 s galGal2.chrM 1246 1 + 16775 C
173
174 a score=34712.0
175 s hg17.chrM 599 43 + 16571 AAAGCAATACACTGAAAATGTTTAGACGGGCT----CACATCACCCC
176 s panTro1.chr9 31868410 43 - 136640551 AAAGCAAGACACTGAAAATGTCTAGATGGGTT--TGCACA--ACCCC
177 s mm5.chrM 19 42 + 16299 AAAGCAAAGCACTGAAAATGCTTAGATGGATA--ATTGTA--TCCC-
178 s rn3.chr7 48861581 43 - 143082968 AAAGCACAGCACTGAAAATGTTTAGATGAACT-TTTAACA--TCCC-
179 s canFam1.chrM 20 42 + 16727 AAAGCAAGGCACTGAAAATGCCAAGATGAGTC---GCACG--ACTCC
180 s galGal2.chrM 1247 43 + 16775 AAAGCATGGCACTGAAGATGCCAAGATGGTACCTACTATA--CCT--
181 s fr1.chrUn 320907107 44 + 349519338 AAAGCAGAGTACTGAAGATGCTAAGATGGGCCCTGAAAAG--TCCC-
182 s danRer1.chrM 968 44 + 16596 AAAGCACGGCACTGAAGCTGCCAAGATGGGCCCTAATAAG--CTCC-
183
184 a score=8181.0
185 s hg17.chrM 642 9 + 16571 ATAAACAAA
186 s panTro1.chr3 35462429 9 - 209662276 ataaacaaa
187 s mm5.chrM 61 9 + 16299 ATAAACACA
188 s rn3.chr7 48861624 9 - 143082968 ATAAAAAGG
189 s canFam1.chrM 62 9 + 16727 ATAAACATA
190 s galGal2.chrM 1290 9 + 16775 GTGGGCAAA
191 s fr1.chrUn 320907151 9 + 349519338 GCAGGCACA
192 s danRer1.chrM 1012 9 + 16596 GCATGCACA
193
194 a score=-123.0
195 s hg17.chrM 651 1 + 16571 T
196 s danRer1.chrM 1021 1 + 16596 A
197
198 a score=0.0
199 s hg17.chrM 651 1 + 16571 T
200
201 a score=-310.0
202 s hg17.chrM 651 1 + 16571 T
203 s mm5.chrM 70 1 + 16299 A
204 s rn3.chr7 48861633 1 - 143082968 T
205 s canFam1.chrM 71 1 + 16727 A
206
207 a score=-123.0
208 s hg17.chrM 651 1 + 16571 T
209 s fr1.chrUn 320907160 1 + 349519338 A
210
211 a score=58671.0
212 s hg17.chrM 652 91 + 16571 AGGTTTGGTCCTAGCCTT-TCTATTAGCTCTTAGTAAGATTACACATGCAAGCATCCCCGTTCCAGTG------AGTTCACCCTCTAAA--------TCACCACGA-----
213 s panTro1.chr3 35462438 80 - 209662276 ----------ctgGCCTT-TTCATTAGCTCTTAGTAGGATTACACATGCAAGCATCCCCACCCCAGTGAAAATGA------CCTCTGGA--------TCACCG-GC-----
214 s mm5.chrM 71 88 + 16299 AGGTTTGGTCCTGGCCTT-ATAATTAATTAGAGGTAAAATTACACATGCAAACCTCCATAGACCGGTGTAAA--A------TCCCTTAA--------ACATTT-AC-----
215 s rn3.chr18 23098529 91 - 87338544 AGGTTTGGTTCTGACTTTGGTGATTATTTTGAGGTAGATTTACATATGCAAA-ATCACTAAACCATTGTGAA--A------TCCCTTAAAA-----TTCACAT-GG-----
216 s canFam1.chrM 72 90 + 16727 AGGTTTGGTCCTAGCCTT-CCTATTAGTTTTTAGTAGACTTACACATGCAAGCCTCCACGCCCCAGTGAGAA--T------GCCCTTAAAA------TCACCA-GT-----
217 s galGal2.chrM 1299 94 + 16775 AGACTTAGTCCTAACCTT-TCTATTGGTTTTTGCTAGACATATACATGCAAGTATCCGCATCCCAGTGAAAA--T------GCCCCCAAACCTTTCTTCCCAA--------
218 s fr1.chrUn 320907161 88 + 349519338 AAGCTTGGTCCTGACTTT-ACTAACAACTCTGATCAAACTTACACATGCAAGTATCCGCATCCCAGTGAAAA--T------GCCCCCCG--------CCCCCC-GT-----
219 s danRer1.chrM 1022 93 + 16596 AGGCATGGTCCCGACCTT-TTGATCAGCTTTTACCTAATTTACACATGCAAGTCTCCGCACCCCTGTGAATA--C------GCCCTCAA--------TCCCCA-AACCTGG
220
221 a score=211943.0
222 s hg17.chrM 743 295 + 16571 TCAA-----AAGGGACAAG--CATCAAGCACGCAGCAATGCAGCTCAAAACGCTTAGCCT-AGCCACACCCCCACGGG-AAACAGCAGTGATTAACCTTTAGCAATAAACGAAAGTTTAACTAAGCTATACTAAC-CCCAGGGTTGGTCAATTTCGTGCCAGCCACCGCGGTCACACGATTAACCCAAGTCAATAG-AAGC-CGGCGTAAAGAGTGT----TTTAGATC-ACCCCCTCCCCAATAAAGCTAAAACTCACCTGAGTTGTAAAAAAC-TCCAGTT--GACACAAAATAGACT-ACGAAAGTGGCTT--TA
223 s panTro1.chr3 35462518 292 - 209662276 TCAA-----AAGGAGCAGG--TATCAAGCATGCACGAATGCAGCTCAAAACACTTTGCTC-AACCATACCCCCAAGGG-AAACAGCAGTGATAAATCCTTAGTAATAAACGAAAGTTTGACCAAGCCATACTAATATTTAGGGTTGGTTAATTTTGTGCCAGCCACTGCGGCCATAAGATTAACTCGAGCTAATAG-AACT-TGGCGTAAAGAGTGT----TTAAGGTCTACCTTC-----AATAAAGCTAAGCTCCATCTAAGCTGTAAAAAAC-TCCAGCT--GACATAAAATATACT-ATGAAAGTGACTT--TA
224 s mm5.chrM 159 295 + 16299 TTAAAATTTAAGGAGAGGG--TATCAAGCA--CATTAAAATAGCTTAAGACACCTTGCCT-AGCCACACCCCCACGGG-ACTCAGCAGTGATAAATATTAAGCAATAAACGAAAGTTTGACTAAGTTATACCT---CTTAGGGTTGGTAAATTTCGTGCCAGCCACCGCGGTCATACGATTAACCCAAACTAATTA-TCTT-CGGCGTAAAACGTGTCAACTATAAATAAATA--------AATAGAATTAAAATCCAACTTATATGTGAAAATT-CATTGTTAGGACCTAAACTCAATA-ACGAAAGTAATTC--TA
225 s rn3.chr7 48861782 267 - 143082968 TTAA-----AAGGGGGGAGATTGTCTAGCATACAGTAA-GTAGCTTCAGAAACCTTGCCT-AGTTTTATCCCTATGGG-ACTCAGC----ATCAGGACTTTG-----------ACTTTGAGTAAGTTATACCT---TTTAGAATTGGTAAACTTCTTGACAGCC-CTGCAGTCATA-GACAAACTCAACTT---------T-TTACATAAAACATGT----TCAAGATATAAACTTT----CATGGAAGTAAAAGCAAATTTATATGTGAAAATT-CATAGTT--GGTTTTAAACCCACTAATGAAAATGATTC--TA
226 s canFam1.chrM 164 292 + 16727 TCTA-----AAGGAGCAGG--TATCAAGCACACTCTTAAGTAGCTCATAACACCTTGCTA-AGCCACACCCCCACGGG-ATACAGCAGTGATAAAAATTAAGCCATAAACGAAAGTTTGACTAAGCCATACTA---AATAGGGTTGGTAAATTTCGTGCCAGCCACCGCGGTCATACGATTAACCCAAACTAATAG-GCCTACGGCGTAAAGCGTGT----TCAAGATACTTTTAC-----ACTAAAGTTAAAACTTAACTAAGCCGTAAAAAGC-TACAGTT--ATCATAAAATAAACC-ACGAAAGTGACTTTATA
227 s galGal2.chrM 1393 296 + 16775 GCAA-----AAGGAGCAGG--TATCAGGCACACTCAGCAGTAGCCCAAGACGCCTTGCTTAAGCCACACCCCCACGGGTACTCAGCAGTAATTAACCTTAAGCAATAAGTGTAAACTTGACTTAGCCATAGCAA--CCCAGGGTTGGTAAATCTTGTGCCAGCCACCGCGGTCATACAAGAAACCCAAATCAATAGCTACC-CGGCGTAAAGAGTGG----CCACATGTTATCTGCACCA-GCTAAGATTAAAATGCAACCAAGCTGTCATAAGC-CTAAGATC-CACCTAAACCCAACC---CAAATCCATCT--TA
228 s fr1.chrUn 320907252 296 + 349519338 ----GAAATAGGGAGTTGG--TATCAGGCACACAAATTTGTAGCCCATGACACCTAGCTT-TGCCACGCCCCCAAGGGAATTCAGCAGTGATAAACATTAAGCCATAAGTGAAAACTTGACTTAGTCATGATC---TAAAGAGTCGGTAAAACTCGTGCCAGCCACCGCGGTTATACGAGAGACCCAAGTTGTTAG-CCAA-CGGCGTAAAGGGTGG----TTAGAACTAAAAACAACAA-ACTGAGACCGAACACCTTCAAGGCTGTTATACGC-TTCCGAA--GCAACGAAGAACAATAACGAAAGTAGCCT--CA
229 s danRer1.chrM 1115 291 + 16596 -----GGACGAGGAGCAGG--TATCAGGCACAAAATTT-TTAGCCCAAGACGCCTAGCCA-AGCCACACCCCCAAGGGGATCCAGCAGTGACAAACATTAAGCTATAAGTGAAAACTTGACTCAGTTAAGGTA---AAGAGAGCCGGTAAAACTCGTGCCAGCAACCGCGGTTAAACGAGAGGCTCTAGTTGATAT-ACTA-CGGCGTAAAGGGTGG----TTAAGGAACAATGTAA----AATAAAGCCAAACGGCCCTTTAACTGTTATACGCTTTTAGAT--GCTAGAGGCCCAAAC-ACGAAAGTAGCTT--TA
230
231 a score=156115.0
232 s hg17.chrM 1038 167 + 16571 A----------CATATCTGAACACACAATAGCTAAGACCCAAACTGGGATTAGATACCCCACTATGCTTAGCCCTAAACCTCAACAGTTAAA-TCAACAAAACTGCTCGCCAGAACACTACGAG--CCACAGCTTAAAACTCAAAGGACCTGGCGGTGCTTCATATCCCTCTAGAGGAGC
233 s panTro1.chr3 35462810 166 - 209662276 A----------TAT-CCTGAAGACACAATAGCTAAAATCCAAACTTGGATTAGATACACCACTATGCTTAGCCCTAAACTCTAATAGTTATA-TTAACAAAACCATTTCCTAGAGTACCACAAG--CAACAGCTTAAAATTCAAAGGACTTGGCGGTGCTTTATATCCCTCTAAAGGAGC
234 s mm5.chrM 454 168 + 16299 G---------TCAT-TTATAATACACGACAGCTAAGACCCAAACTGGGATTAGATACCCCACTATGCTTAGCCATAAACCTAAATAATTAAATTTAACAAAACTATTTGCCAGAGAACTACTAG--CCATAGCTTAAAACTCAAAGGACTTGGCGGTACTTTATATCCATCTAGAGGAGC
235 s rn3.chr7 48862049 149 - 143082968 A----------TTG-ACTCAATACATGGCAGTTAAGATATAAATTAGTACTAAATACCTTACTATGC---------------AGTAATTTAG--CAACAAAA-TAAATGTGGGAGAGTTATTAG--CCACAGCTTAATACTCAAAGGACTTGGAGGGACTTTATATCCACCTAAAGCAGC
236 s canFam1.chrM 456 165 + 16727 A----------TAA-TCTGACTACACGATAGCTAAGACCCAAACTGGGATTAGATACCCCACTATGCTTAGCCCTAAACATAGATAATTTTA--CAACAAAATAATTCGCCAGAGGACTACTAG--CAATAGCTTAAAACTCAAAGGACTTGGCGGTGCTTTATATCCCTCTAGAGGAGC
237 s galGal2.chrM 1689 178 + 16775 GCCTCAACGATTAA-TTTTAACCCACGAAAGCTAGGACCCAAACTGGGATTAGATACCCCACTATGCCTAGCCCTAAATCTAGATACCTCCC-ATCACACATGTATCCGCCTGAGAACTACGAGCACAAACGCTTAAAACTCTAAGGACTTGGCGGTGCCCCAAACCCACCTAGAGGAGC
238 s danRer1.chrM 1406 169 + 16596 -----AATTAATTA-CCTGAACCCACGAAAGCTAAGAAACAAACTGGGATTAGATACCCCACTATGCTTAGCCATAAACAAAGACATTTAAT---CACAACAATGTTCGCCCGGACACTACAAG--CATAAGCTTAAAACCCAAAGGACCTGACGGTGCCTTAGATCCCCCTAGAGGAGC
239
240 a score=248485.0
241 s hg17.chrM 1205 298 + 16571 CTGTTCTGTAATCGATAAACCCCGATCAACCTCACCACCTCTTGCTC----AGCCTATATACCGCCATCTTCAGCAAACC-CTGATGAAGGCTACAAAGTAAGCGCAAGTA-CCCACGTAAAGACGTTAGGTCAAGGTGTAGCCCATGAGGTGGCAAGAAATGGGCTACATTTTCTAC-CCCAGAAAA-C---T--ACGATAGCCC-TTATGAAACTTAAGGGTCGAAGGTGGATTTAGCAGTAAACTGAGAGTAGA------GTGCTTAGTTGAACAGGGCCCTG--------------------------------------AAGCGCGTACACACCGCCCGTCACCCTCCTCA
242 s panTro1.chr3 35462976 302 - 209662276 CTGTTCTATAATCGATAAACCCTGGTGCTCCTCACCACCTCTTGCCC--CCAGCGTATATACCGCCATCTTCAGCAAACC-CTAA-AAAGGTCACAAAGTAAGTACAAGTA-CACACATAAAAACATTAGGTCAAGGTGTAGCCCATGAGGTGGCACAAAATTGGCTACATTTTCTATGTCCAGAAAATC---T-CACAACAACCT-TTAGGAAATCTAAGGGCTCAAGGAGGATTTAGCAGTAAACCAAGAGCAGA------GTGCTTGGTTGAATAAGGCCATG--------------------------------------AAGCATGCACACACCGCCCGTCACCCTCCTCA
243 s mm5.chrM 622 302 + 16299 CTGTTCTATAATCGATAAACCCCGCTCTACCTCACCATCTCTTGCTAATTCAGCCTATATACCGCCATCTTCAGCAAACC-CTAA-AAAGGTATTAAAGTAAGCAAAAGAATCAAACATAAAAACGTTAGGTCAAGGTGTAGCCAATGAAATGGGAAGAAATGGGCTACATTTTCTTATAAAAGAACA-T---T--ACTATACCCT-TTATGAAACTAAAGGACT-AAGGAGGATTTAGTAGTAAATTAAGAATAGA------GAGCTTAATTGAATTGAGCAATG--------------------------------------AAGTACGCACACACCGCCCGTCACCCTCCTCA
244 s rn3.chr7 48862416 326 - 143082968 CTGTT-TATAACCCGTAAACCCCATGTTAACTTACCATC---TGCTAATTTAGCCTATGTACTGATGTCTTCAGTAAACA-CTAA-AACGGAATTGCAGTAAGCAAATGAA-CAATTATAAAAATGTTAGGTTGAGGTGTAGCCTATGGGATGGAAAGTAATAGGCTATATTTTCTCA-ACAAGAACA-CACAT--ATTATTATCT-TTATGAAACTTAAGGAACCAAGGAGGATT------------AAGAATAGA------GAACCTAATTGAATTGAGCAATGACATACACACACACACACACACACACACACACACACACACACACACACACACAGCCTGTCACCTTCCTCA
245 s canFam1.chrM 621 303 + 16727 CTGTTCTATAATCGATAAACCCCGATAAACCTCACCACCTTTCGCTAATTCAGTCTATATACCGCCATCTTCAGCAAACC-CTCA-AAAGGTAGAACAGTAAGCACAATCATTTTACATAAAAAAGTTAGGTCAAGGTGTAACTTATGAGGTGGGAAGAAATGGGCTACATTTTCTAC-CCAAGAACA-T---TTCACGAATGTTT-TTATGAAA-TTAAAAACTGAAGGAGGATTTAGTAGTAAATTAAGAATAGA------GAGCTTAATTGAATAGGGCCATG--------------------------------------AAGCACGCACACACCGCCCGTCACCCTCCTCA
246 s galGal2.chrM 1867 308 + 16775 CTGTTCTATAATCGATAATCCACGATTCACCCAACCACCCCTTGCCAGCACAGCCTACATACCGCCGTCGCCAGCCCACCTCTAATGAAAGAACAACAGTGAGCTCAATAGCCCCTCGCTAATAAGACAGGTCAAGGTATAGCCTATGGGGTGGGA-GAAATGGGCTACATTTTCTAA-CATAGAACA-A------ACGAAAAAGG-ATGTGAAACCCGCCCTTAGAAGGAGGATTTAGCAGTAAAGTGAGATCATACCCCCTAAGCTCACTTTAAGACGGCTCTG--------------------------------------AGGCACGTACATACCGCCCGTCACCCTCTTCA
247 s danRer1.chrM 1575 299 + 16596 CTGTTCTAGAACCGATTATCCCCGTTAAACCTCACCATTTCTAGCAAAATCAGCCTATATACCACCGTCGCCAGCTTACC-CTGT-GAAGGAATAACAGTAAGCAAGATGGGCATAGCCCAGAAAGTCAGGTCGAGGTGTAGCACATGAAATGGGAAGAAATGGGCTACACTTTCTAC-CCCAGAATA-T------ACGAAAATGTAACATGAAAC--AATACTTGAAGGAGGATTTAGCAGTAAAAGAGAAGCAGA------GTGTCTCTTTGAACCCGGCTCTA--------------------------------------AGGCGCGTACACACCGCCCGTCACTCCCTCC-
248
249 a score=1049.0
250 s hg17.chrM 1503 2 + 16571 AG
251 s panTro1.chr3 35463278 2 - 209662276 AA
252 s mm5.chrM 924 2 + 16299 AA
253 s rn3.chr7 48862742 2 - 143082968 AA
254 s canFam1.chrM 924 2 + 16727 AG
255 s danRer1.chrM 1874 2 + 16596 GG
256
257 a score=69.0
258 s hg17.chrM 1503 2 + 16571 AG
259 s danRer1.chrM 1874 2 + 16596 GG
260
261 a score=273.0
262 s hg17.chrM 1505 1 + 16571 T
263 s panTro1.chr3 35463280 1 - 209662276 T
264 s mm5.chrM 926 1 + 16299 T
265
266 a score=-1040.0
267 s hg17.chrM 1505 2 + 16571 -TA
268 s canFam1.chrM 926 2 + 16727 -TA
269 s galGal2.chrM 2175 2 + 16775 -CA
270 s danRer1.chrM 1876 2 + 16596 TC-
271
272 a score=-196.0
273 s hg17.chrM 1506 5 + 16571 ATACT
274 s galGal2.chrM 2176 5 + 16775 AAGCC
275 s danRer1.chrM 1877 5 + 16596 CAATT
276
277 a score=-1173.0
278 s hg17.chrM 1506 2 + 16571 -AT
279 s panTro1.chr3 35463281 2 - 209662276 -AT
280 s galGal2.chrM 2177 1 + 16775 -A-
281 s danRer1.chrM 1877 2 + 16596 CA-
282
283 a score=-1064.0
284 s hg17.chrM 1507 6 + 16571 ---TACTTC
285 s galGal2.chrM 2180 3 + 16775 ---CAT---
286 s danRer1.chrM 1878 6 + 16596 AATTGC---
287
288 a score=-59.0
289 s hg17.chrM 1507 4 + 16571 TACT
290 s galGal2.chrM 2177 4 + 16775 AGCC
291 s danRer1.chrM 1878 4 + 16596 AATT
292
293 a score=-3811.0
294 s hg17.chrM 1511 2 + 16571 -TC
295 s mm5.chrM 927 1 + 16299 --T
296 s rn3.chr7 48862744 2 - 143082968 -TT
297 s galGal2.chrM 2182 1 + 16775 -T-
298 s danRer1.chrM 1882 2 + 16596 GC-
299
300 a score=-14425.0
301 s hg17.chrM 1513 23 + 16571 AAAGGACAT-------------TTAAC-TAA--AACCCC--
302 s mm5.chrM 928 26 + 16299 AAATTAAAC-------------TTAACATAATTAATTTC--
303 s rn3.chr7 48862746 23 - 143082968 AAAAAATAT-------------TCT---TTGCCTATATT--
304 s canFam1.chrM 928 39 + 16727 ATAAGACACAACCATAACCATATTAACTTAACTAAAACA--
305 s galGal2.chrM 2183 21 + 16775 -----------------CAACATCAAT-AAATATATACT--
306 s danRer1.chrM 1884 21 + 16596 -------------------ACAAGAAA-TAATTAATACAGA
307
308 a score=-271.0
309 s hg17.chrM 1536 10 + 16571 TACGCATTTA
310 s galGal2.chrM 2208 10 + 16775 CTCCCGGCTA
311 s danRer1.chrM 1905 10 + 16596 AGCACAGACA
312
313 a score=-3011.0
314 s hg17.chrM 1536 9 + 16571 ----TACGCATTT
315 s mm5.chrM 954 9 + 16299 ----TAGACATCC
316 s rn3.chr7 48862769 9 - 143082968 ----TCAACATTT
317 s galGal2.chrM 2206 6 + 16775 -------CCCTCC
318 s danRer1.chrM 1905 9 + 16596 AGCACAGAC----
319
320 a score=856.0
321 s hg17.chrM 1545 4 + 16571 ATAT
322 s panTro1.chr3 35463322 4 - 209662276 ATAT
323 s mm5.chrM 965 4 + 16299 TTAT
324 s rn3.chr7 48862779 2 - 143082968 --AT
325 s galGal2.chrM 2215 4 + 16775 CTAA
326
327 a score=0.0
328 s hg17.chrM 1546 3 + 16571 TAT
329
330 a score=-583.0
331 s hg17.chrM 1546 3 + 16571 TAT
332 s galGal2.chrM 2218 1 + 16775 A--
333
334 a score=94180.0
335 s hg17.chrM 1549 256 + 16571 AGAGGAGACAAGTCGTAACATGGTAAGTGTACTGGAAAGTGCACTTGGACG--AACCAGAGTGTAGCT-TAA---CACAAAGCACCCAACTTA-----CACTTAGGAGAT-----TTCAA-------------CTTAACT--TGACCGCTCTGAGCTAAAC--CTAGCC-------CCAAACCCACTCCACCT---------TACTACCAG--ACAACC---TTAGCCAAACCATTTACCC---AAAT----AA---------AGTATAGGCGATAGAAAT---TGAAACCTGGCGCAATAGA----TATAGTACCGCAAGGGAAAGATGAAA
336 s panTro1.chr3 35463326 259 - 209662276 ACAGGAGATAAGTTGCAACATGGTAAGCATACTGGGAAGTGCGCTTGGACA--AACCAAAGTGTAGCT-TAA---ACCAAAGCATCCAGCTTA-----CACCTGGAAGAT-----TTCAT-------------TGTGACC--TGATCACTTTGAGCCAACT--CTAGCC-------CCAAACC---------TCGCTAAAAATACTATTAA--ACTATC---TTAATCAAACGATTTACCTTAGAAA-----AA---------AGTTTAGGCAACAGCAATTTTT--ACCCTGGTGCAATAGA----CATAGTATCATAAGGGAAAGATGAAA
337 s mm5.chrM 970 261 + 16299 AGAGGAGATAAGTCGTAACAAGGTAAGCATACTGGAAAGTGTGCTTGGAAT--AATCATAGTGTAGCT-TAA--TATTAAAGCATCTGGCCTA-----CACCCAGAAGAT-----TTCA----------------TGACCAATGAACACTCTGAACTAATC--CTAGCC-------CTAGCCC---------TACACAAA--TATAATTAT--ACTATTATATAAATCAAAACATTTATCCTACTA------AA---------AGTATTGGAGAAAGAAATTCGTACATCTAGGAGCTATAGA----ACTAGTACCGCAAGGGAAAGATGAAA
338 s rn3.chr7 48862782 248 - 143082968 GGAGGCGATGAGCTCTAACATGATAATCGTACTGGAAAGTGTGCTT--------ATCTTAGTATATCA-TAATTTTTAAAAGCATCTGGTCTACCCTCCCCCCAGAAG---------CA-----------------------TGTATGCTCTGAATCAACT--CTAGCA-------TAAAAAC-------CCTAAACTAAAATATATTT----ATTACT---TGAATTAAGTCATTTGGATTAATA------GA---------AATTTTGGTGAGAGAAACTTAT-TTTTTAGGCACTATGGA----AATGGCACCATCA-GGAAAGATGAAA
339 s canFam1.chrM 969 258 + 16727 AGAGGAGACAAGTCGTAACAAGGTAAGCATACCGGAAGGTGTGCTTGGATT--AATCAAAGTGTAGCT-TAA----CTAAAGCGTCTGGCCTA-----CACCCAGAAGAT-----TTCA----------------TTACTTATGGCCACTTTGAACAAAAG--CTAGCCCAA----CTAACCC---------CAAACTTAAGTATTACA----GACACA---TAAAATAAAACATTTAGTTAAACAAT---AAA---------AGTATAGGAGATAGAAATTTTA----ATTGGAGCGATAGA----GATAGTACCGTAAGGGAATGATGAAA
340 s galGal2.chrM 2219 281 + 16775 AGACGAGGCAAGTCGTAACAAGGTAAGTGTACCGGAAGGTGCACTTAGACT---ACCAAGGCGTAGCTATAA--CTTCAAAGCATTCAGCTTA-----CACCTGAAAGATACC--CTCAACAGACAAGGTCGCCTTGACT--TGCCCCCCCT-----------CTAGCCCGA----CAAACTC---------GTACCCTTAACATA-------AAAAAC---TTACCTCCCCCTCTTAACCAAAACATTATAAA--TTGTCCCAGTATAGGCGATAGAAAAGACT--ACCCCGGCGCAATAGAGGCTAACTGTACCGCAAGGGAAAGATGAAA
341 s danRer1.chrM 1915 285 + 16596 AGGGGGGAAAAGTCGTAACAAGGTAAGTGTACCGGAAGGTGCACTTGGACATTATCCAAGACGTGGCT-GAA--CAGTTAAGCATCTCACTTA-----CACCGAGAAAACATCCGTGCA-----------------AATC--GGATCGTCCTGAGCTAAATAGCTAGCTTAACCATCAAGATC---------AACTTAAAAACATCAATAACCTATAAT---CAACCTAAAACCACAAACTAAACCAT----TATATTATCCTAGTATGGGAGACAGAAAAGATA-AAATACTAAGCAATAGA----GAAAGTACCGCAAGGGAACGCTGAAA
342
343 a score=152796.0
344 s hg17.chrM 1805 245 + 16571 ------------AATTATAACCAAGCA-TAATATAGCAAGGACTAACCCCTATACCTTCTGCATAATGAATTAACTAGAAATAACTTTGCAAGGAGAGCCAAAGCTAAGACCCCCGAAA-CCAGACGAGCTACCTAAGAACAG----CTAAAA---GAGCACACCCGTCTATGTAGCAAAATAGTGGGAAGATTTATAGGTAGAGGCGACAAACCTACCGAGCCTGGTGATAGCTGGTTGTCCA-AGATA-GAATCTTAGTTCAACTT
345 s panTro1.chr3 35463586 243 - 209662276 ------------AACTATA-TCAAGCACTAAAA-AGCAAGGACAAGCCCTTATACTTTCTGCATAATGTATTAACTAGAAATA-CTTTACACAGAAAACTATAGCCAAGTCCCCCAAAA-CCAGATGAGCTACACAAGAATAG----CTGAAA---GAGCACACTCACCTACATGGCAAAATAGTGGGAAGATTCATGAGTAGTGGTGACAAGTCTACCAAGCCTGGTGATAGCTGGTTGTCCA-AGATA-GAATCTTAGTTCAACTT
346 s mm5.chrM 1232 245 + 16299 ------------ACTAATT-AAAAGTAAGAACA-AGCAAAGATTAAACCTTGTACCTTTTGCATAATGAACTAACTAGAAAACTTCTAACTAAAAGAATTACAGCTAGAAACCCCGAAA-CCAAACGAGCTACCTAAAAACAA----TTTTAT---GAATCAACTCGTCTATGTGGCAAAATAGTGAGAAGATTTTTAGGTAGAGGTGAAAAGCCTAACGAGCTTGGTGATAGCTGGTTACCCA-AAAAATGAATTTAAGTTCAATTT
347 s canFam1.chrM 1228 246 + 16727 ------------ACATCTT-AACAGTATTAAAC-AGCAAAGATTACCCCTTCTACCTTTTGCATAATGAACTAGCCAGAAACAACTTAACAAAGAGAACTTAAGCTAAGCTCCCCGAAA-CCAGACGAGCTACCCATAAACAAT---CTAAAA---GGATCAACTCATCTATGTAGCAAAATAGTGAGAAGATTTGTGGGTAGAGGTGAAAAGCCTAACGAGCCTGGTGATAGCTGGTTACCCACAGACA-GAATTTTAGTTCAACTT
348 s galGal2.chrM 2507 248 + 16775 ------------GAAAACC-ATAAGCAAAAAAC-AGCAAAGACCAACCCTTGTACCTTTTGCATCATGATTTAGCAAGAACAA-CCAAGCAAAGTGAGCTAAAGTTTGCCTTCCCGAAACCCAAGCGAGCTACTTGCGAGCAG----CTAAAATTTGAGCGAACCCGTCTCTGTTGCAAAAGAGCGGGATGACTTGCCAGTAGAGGTGAAAAGCCTACCGAGCTGGGTGATAGCTGGTTACCTG-TCAAACGAATCTAAGTTCCCCCT
349 s danRer1.chrM 2200 263 + 16596 GAGAAATGAAATAACCCGT-AAAAGCAATAAAA-AGCAAAGATTAAACCTTGTACCTTTTGCATCATGATTTAGCCAACACCA-CTAGGCAAAGAGACCTTTAGTTTAAAGCCCCGAAT-CCAGGTGAGCTACCCCGAGACAGCCTATTTAACTTAGGGCCAACCCGTCTCTGTGGCAATAGAGTGGGAAGAGCTCCGGGTAGAAGTGACAGACCTATCGAACCCGGCAATAGCTGGTTGTCTG-GGAGATGAATAAAAGTTCAGCTT
350
351 a score=2454.0
352 s hg17.chrM 2050 19 + 16571 TAAATTTGCCCACAGAA-------CC
353 s panTro1.chr3 35463829 17 - 209662276 TAAACTTACCCACAGAA---------
354 s mm5.chrM 1477 17 + 16299 TAAACTTGCTAAAAAAA---------
355 s canFam1.chrM 1474 17 + 16727 TAAATTTACCtaaaaaa---------
356 s galGal2.chrM 2755 26 + 16775 TAACCCACCCCCTAAAGACACCCACC
357
358 a score=-424.0
359 s hg17.chrM 2069 37 + 16571 CT--CTAAATCCCCTTG---TAAATTTAACTGTTAGTCCAAA
360 s panTro1.chr3 35463846 38 - 209662276 -TTACTTAATTTCCCAG---TAAGTTTAACTGTCAGTCTAAA
361 s mm5.chrM 1494 38 + 16299 -CAACAAAATCAAAAAG---TAAGTTTAGATTATAGCCAAAA
362 s canFam1.chrM 1491 37 + 16727 --aataaaattttaatg---taaatttaaaatataGTCTAAG
363 s galGal2.chrM 2781 42 + 16775 TTTGTCAACCTTGAGAACGTTGGGGTTAAGAGCAATTCGATG
364 s danRer1.chrM 2499 37 + 16596 --CACAAAATTAAGAGA---AAAATACGAAAGTTAGTTAAAG
365
366 a score=163719.0
367 s hg17.chrM 2106 463 + 16571 GAGGAACAGCTCTTTGGACACTAGGAAAAAACCTTG-TAGAGAGAGTAA-----AAAAT--------------TTAACACCCATAGTAGGCCTAAAAGCAGCCACCAAT-TAAGAAAGCGTTCAAGCTCA---ACACCCA-CTACCTAAAA----AATCCCAAACATATA----AC-TGAACTCCT-CAC--ACCCAATTGGACCAATCTATCACCCTATAGAAGAACTAATGTTAGTATAAGTAA-CATGAA-AAC------ATTCTCCT-CCGCATAAGCCTGCGTCAGATCAAAACACTGA---ACTGACAATTAA-CAG-----------------CCCAATATCTACAATCAAC-----CAACAAGTCATTATTACCCT--------CACTGTCAACCCAACACAGGCATGCTCATAAGGAAAGGTTAAAAAAAGTAAAAGGAACTCGGCAAAC-CTTACCCCGCCTGTTTACCAAAAACATCACCTCTAGC--ATCACCAGTATTAGAGGCACCGCCTGCCCAGTGACAC---ATGTTTAACG
368 s panTro1.chr3 35463884 464 - 209662276 GAGGGACAGCTCTTTAGACCCTAGGAAGCAACCTTCCTACAGAGAGTAA-----AAAATA-------------TTACCACC-ATAGTTGGCCCAAAAGCAACCACCAGT-TAAGAAAGCATTTAAGCTCA---ACATCTAACTATCTTAAATTCTAATC----------ACTCTAC-TGTACTCCT-AAC--ATCACATTGGACTAATCTATTACTTAATAGAAGCAATAATGTTAATATAAGTAA-CATGAA-GAC------ATTCTCCA-TTGCATAAGCTTACATCAGACCAGAATA---ACCCACTGGCAGTTAA-CAG-----------------CCTAATATT---AATAAAC-GATATAATAAGT-------ACCCTATTATTTACACTGTTAACTCAACAAAGGCATGCTC-TAAGGAAAGTTTACAACAAGTAAAAGGAACTCAGCAAAT-CTTACCCTGCCTGTTTACCAAAAACATCACCTCTAGC--ATTACCAGTATTAGAGGCACTGCCTGCCCAGTGACAT---ATGTTCAACT
369 s mm5.chrM 1532 472 + 16299 GAGGGACAGCTCTTCTGGAAC--GGAAAAAACCTTT-AATAGTGAATAATTAACAAAACA-----------GCTTTTAACC-ATTGTAGGCCTAAAAGCAGCCACCAAT-AAAGAAAGCGTTCAAGCTCA---ACATAAA---ATTTCAAT---TAATTCCATAATTTAC----AC-CAACTTCCTAAAC--TTAAAATTGGGTTAATCTATAACTTTATAGATGCAACACTGTTAGTATGAGTAA-CAAGAA-TTCC----AATTCTCCA--GGCATACGCGTATAACAACTCGGAT-----AACCATTGTTAGTTAATCAG-----------------ACTATAGGC---AATAATC--ACACTATAAATAATC---CACCTATAACTT-CTCTGTTAACCCAACACCGGAATGCCT-AAAGGAAAGATCCAAAAAGATAAAAGGAACTCGGCAAACAAGAACCCCGCCTGTTTACCAAAAACATCACCTCTAGC--ATTACAAGTATTAGAGGCACTGCCTGCCCAGTGACTA---AAGTTTAACG
370 s rn3.chr6 55165806 419 + 147642806 GAAGGGCAGCTCTTTCTAA--TAGGAAATAACTTTA-ATTAGAGAATAA-----AAAAAA----------------------ACAG---------------------------ATATGCATTCAAGGTCA---ACAAACA---ATTTAGAA-----TTCCAGTATTCATG----AG-TAACTTCCTAAAT--TACATATTGGCTTAATCTATAAGGTAGCAGATAAAATTTTATTAAAATTAGTAA-TAAGAA-GAA------ACTCTTCA--TGTGTGAGAACACTTCAAATCAAAT-----ACCCACTGATAATTAAAATG-----------------CCTAGAGAT---AA-------ATTTAATAACACACT---TCTATTTAATT--TATTGTCAACCCTATACAAGAACACAC--AGGGAAAGATTAAAAGAAATGAAAGGAAGTTGGCAATC-AAGAACCCACCTATTCACCAGAAGAGTCTCCTTTGGG--ATTGATAGTATTAGAGGCGCTATATTCCCAGGGTCAG---ACGCTAAATG
371 s canFam1.chrM 1528 466 + 16727 AAGGTACAGCTTCTTAGAATC-AGGATACAACCTTT-ATTAGAGAGTAT-----ATACTA-------------ATATCACC-ATAGTTGGCTTAAAAGCAGCCACCAAT-TGAGAAAGCGTTCCAGCTCA---ACAAACA---ATATAACT---TAATCCCAACCATACT----ACATCAACTCCT-AATTATACCCCCTGGGTCATTCTATTTAAGTATAGAAGCAATAATGCTAGTATGAGTAA-CAAGAACCAT------TTTCTCCC--CGCATAAGCTTATATCAGGAACGGATA---GACCACTGATAGTTAA-CAA-----------------TCTGATAAT---ATCAACC-----CAAAAATGAAAT---ACTTATCCACCC-CATTGTTAACCCAACACAGGTATGCATTCAAGGAAAGATTAAAAGGAGTAAAAGGAACTCGGCAAACACAAACCCCGCCTGTTTACCAAAAACATCACCTCCAGC--ATTTCTAGTATTGGAGGCACTGCCTGCCCGGTGACAC---TTGTTTAACG
372 s galGal2.chrM 2823 453 + 16775 GGGGTACAGCTCCATCGAAAA-AGAACACAACCTCC-TCCAGCGGATAA-----TAATCAC----------CCCTCCCCGC-ACTGTGGGCCTTCAAGCAGCCACCAACAAAAGAGTGCGTCAAAGCTC---------CC---TCATTAAA----AAATCTAAAACCCTA----TT-TGACTCCCTCAAC----CAAAGCAGGTTAACCTATGAC--AATAGAAGAATCAATGCTAAAATGAGTAATCTGGAA-CCT------ATCCTCCTACGGCGTAAACTTACATTA-------------ATACATT----ATTAA-CAG-----------------AACTCAACT---TATACCCCCACACTAACAAGCAAT---ACGTATTCCTCA-ATCTGTTAAGCCAACCCAGGAGCGCCC--ACAGGATGATTAAAACCTACAGAAGGAACTCGGCAAACCAAAGACCCGACTGTTTCCCAAAAACATAGCCTTCAGCTAACAACAAGTATTGAAGGTGATGCCTGCCCAGTGACCCCCAAAGTTCAACG
373 s danRer1.chrM 2536 494 + 16596 AGGGTACAGCCCCTTTAACAA-AGGATACAACCTTT-TCAGGAGAATAA-----AGATCATAATTTACAAAACACGTTGTC-GTAGTGGGCCTGGAAGCAGCCACCTAA-AAAGAAAGCGTTAAAGCTCAGGTAAGAAGA---AATTCATA----ATTCTGACAATAATA----TC-TTACTTCCCTAAA----AATACCAGACTAATCCATACAAATATGGAAGAAATTATGCTAAAATGAGTAA-CAAGAA-GAACCTGTACTTCTCCA--AGCACAAGTGTAAGCCAAGTTGGACA----AACCATTGGCAATTAA-CGAGCCCAAACAAAGAGGGCAATGTGAGT---TAAAAAC--TGAGAAAAATCCACA---ACAGA--------CATCGTTACCCCCACACTGGAGTGCATATAAGGAAAGACTAAAAGAAAGGGAAGGAACTCGGCAAACACAAGCCTCGCCTGTTTACCAAAAACATCGCCTCCTGA--CATCCCAATATAGGAGGTCCAGCCTGCCCAGTGACAA---TAGTTTAACG
374
375 a score=23403.0
376 s hg17.chrM 2569 19 + 16571 GCCGCGGTACCCTAACCGT
377 s panTro1.chr3 35464348 19 - 209662276 GCCACGGTATCCTGACCAT
378 s mm5.chrM 2004 19 + 16299 GCCGCGGTATCCTGACCGT
379 s canFam1.chrM 1994 19 + 16727 GCCGCGGTATCCTGACCGT
380 s galGal2.chrM 3276 19 + 16775 GCCGCGGTATCCTAACCGT
381 s danRer1.chrM 3030 19 + 16596 GCCGCGGTATTTTGACCGT
382
383 a score=421032.0
384 s hg17.chrM 2588 571 + 16571 GCAAAGGTAGCATAATCACTTGTTCCTTAAATAGGGACCTGTATGAATGGCTCCACGAGGGTTCAGCTGTCTCTTACTTTTAACCAGTGAAATTGACCTGCCCGTGAAGAGGCGGGCATGACACAG-CAAGACGAGAAGACCCTATGGAGCTTTAATTTATTAATGCAAA-CAGTACCT--AACAAACC---CACAGGTCCTAAACT---ACCAAA--CCTGCATTAAAAATTTCGGTTGGGGCGACCTCGGAGCAGAACCCAACCTCCGAGCAGTACATGCTAAGACTT--CACCAG------------------TCAAAGC-GAACTACTATACTC---------AATTGATCCA---AT-A-A--CTTGACCAACGGAACAAGTTACCCTAGGGATAACAGCGCAATCCTATTCTAGAGTCCATATCAACAA-TAGGGTTTACGACCTCGATGTTGGATCAGGACATCCCGATGGTGCAGCCGCTATTAAAGGTTCGTTTGTTCAACGATTAA-AGTCCTACGTGATCTGAGTTCAGACCGGAGTAATCCAGGTCGGTTTCT-ATCTACT--TCAAATTCCTCCCTGTACGAAAGGACAAGAGAAATAAGGCC---------------------------------------------TACTTCACA
385 s panTro1.chr3 35464367 568 - 209662276 GCAAAGGTAGCATAATCACTTGTTCCCTAAATAGGGACTTGTACGAATTGCTACACGAGGGTTCAGCTGTCTCTTACTTTTAATCAGTGAAATTGACCTATCAGTGAAGAGGTGGATATAAAAAAAATAAGACGAGAAGACCCTATGGAGCTTTAATTCATTAATACAAA-TAAAAACTCAAACAAGCC---AACAGGCCCTAGCCT---ACTATC--CCTGCATTAAAAATGTTGTTTGGGGTGACCCCGGAGCATAATTCAACCTCTGAACGATGTAAACTAAGACCG--CACTAG------------------TCTAAGC-GAGTTAACATAC------------GTTGACTCA---ATTA-A--TTTGATGAGCGGAATAAGTTATCCTAGGGATAACAGCACAATCCTATTCTACAGTCCATGTCAACAA-TAGTGTTTATGACCTCAATGTTGGATCAGGACATCCTAATGGTGCAGCTGCTATTAAGGGTTTGTTTCTTCAGTGATTAA-AGTCCTACCTGATCTGAGGTCAGACTGGAGTAATCCAGGTTGGTTTCT-AACTATT--TAACATTTCTCCTAGTACAAAAGGACAA----AATAGTGCC---------------------------------------------CACTTCATA
386 s mm5.chrM 2023 575 + 16299 GCAAAGGTAGCATAATCACTTGTTCCTTAATTAGGGACTAGCATGAACGGCTAAACGAGGGTCCAACTGTCTCTTATCTTTAATCAGTGAAATTGACCTTTCAGTGAAGAGGCTGAAATATAATAA-TAAGACGAGAAGACCCTATGGAGCTTAAATTATATAACTTATC-TATTTAATTTATTAAACC---TAATGGCCCAAAA-----ACTATAG-TATAAGTTTGAAATTTCGGTTGGGGTGACCTCGGAGAATAAAAAATCCTCCGAATGATTATAACCTAGACTT---ACAAG------------------TCAAAGTAAAATCAACATATCT---------TATTGACCCAGATAT-A-T--TTTGATCAACGGACCAAGTTACCCTAGGGATAACAGCGCAATCCTATTTAAGAGTTCATATCGACAATTAGGGTTTACGACCTCGATGTTGGATCAGGACATCCCAATGGTGTAGAAGCTATTAATGGTTCGTTTGTTCAACGATTAA-AGTCCTACGTGATCTGAGTTCAGACCGGAGCAATCCAGGTCGGTTTCT-ATCTATT--TACGATTTCTCCCAGTACGAAAGGACAAGAGAAATAGAGCC----------------------------------------------ACCTTACA
387 s rn3.chr3 85357956 538 - 170969371 GCATATATAAAATAATGTCTTG-TCTCTAAATAAGGGATTGAATGAATGTCCACACCAGACTTTTATTGCCAATTACTTCTAATCAGTGAAATTGACTTTCCTATGAAAAGAAAGTAATAAATACA-TAAGATGTGAAA------------CTTAATCTATTAGTTCAAT-AAAAAAATT-AATTACCT---TAAGGGACTAAAA-----ATCATGA-TCTAAATTACTAATTTTGTTTAGGGTGAGCTCAGGATATAAATAAATGTCTATATGGC-CAAGCACAGACTC--ACTCTG------------------TCACAAT-AAACACTTTTATTT----------ATTGACCCA---GA-A-A--TTTGATCTACGGGATAAATTATTTTAGGACCAACCCCAC-ATTCTATTGTGTGGTTTATGATCATAG-TCAGGTTTATGATTCCAGTGTTAAATCAAGATGCCCTAACTGTGTAACA--TAATAAAGTTTGATTGCTACA------AA-AGTCCCATGGGGTCTGAGTTCACATTGCA-----CCAGGTT--TCTCTAATCTATA--TTGTTTTTGTCAGAATACAAAGGGGAAA---AAAAGAGGTC---------------------------------------------CAGTTTACA
388 s canFam1.chrM 2013 578 + 16727 GCAAAGGTAGCATAATCATTTGTTCTCTAAATAGGGACTTGTATGAATGGCCACACGAGGGTTTAACTGTCTCTTACTCCCAATCAGTGAAATTGACCTTCCCGTGAAGAGGCGGGAATACCACAA-TAAGACGAGAAGACCCTATGGAGCTTTAATTAACTAACCCAAACTTATGGATACTAGATACC---TACAAGGCATAACATAACACCATTATTATGAGTTAGCAATTTAGGTTGGGGTGACCTCGGAATATAAAAAAACTCCCGAGTGATTAAAATTTAGACCC---ACAAG------------------TCAAAAT-ACAACATCACTT------------ATTGATCCA---AT-A-ATTTTTGATCAACGGAACAAGTTACCCTAGGGATAACAGCGCAATCCTATTCAAGAGTCCATATCGACAA-TAGGGTTTACGACCTCGATGTTGGATCAGGACATCCTAATGGTGCAGCAGCTATTAAGGGTTCGTTTGTTCAACGATTAA-AGTCCTACGTGATCTGAGTTCAGACCGGAGTAATCCAGGTCGGTTTCT-ATCTATT-ATACAACCTCCCCCAGTACGAAAGGACAAGGGATGTAAGGCC---------------------------------------------TACCTCACA
389 s galGal2.chrM 3295 630 + 16775 GCGAAGGTAGCGCAATCAATTGTCCCGTAAATTGAGACTTGTATGAATGGCTAAACGAGGTCTTAACTGTCTCCTGTAGGTAATCTATGAAATTAGTATTCCCGTGCAAAAACGAGAATGTGAACA-TAAGACGAGAAGACCCTGTGGAACTTTAAAATCACGACCACCT-TACAACCTTACACAGCCC---CACTGGGTCCACCCACACATAAACC-CCTGGTCGACATTTTTCGGTTGGGGCGACCTTGGAGAAAAAAAAATCCTCCAAAC-CCACAGACCACAACTC---TTCAC------------------TAAGACC-AACTCCTCAAAGTACCAACAGTAACCAGACCCA---AT-ATA--ATTGAGCAATGGACCAAGCTACCCCAGGGATAACAGCGCAATCTCCTCCAAGAGCCCATATCGACAA-GGAGGTTTACGACCTCGATGTTGGATCAGGACAACCTAATGGTGCAACCGCTATTAAGGGTTCGTTTGTTCAACGATTAACAGTCCTACGTGATCTGAGTTCAGACCGGAGCAATCCAGGTCGGTTTCT-ATCTATG---GACACTCCTCCTAGTACGAAAGGACCGGAGAAGTGGGGTCAATACCACTGAGCACACCCCAACCTTCTAAGCAATGAATACAACTCAACTGCCA
390 s danRer1.chrM 3049 597 + 16596 GCAAAGGTAGCGCAATCACTCGTCCTTTAAATAGGGACCTGTATGAATGGCCAAACGAGGGCTTAACTGTCTCCCCCATCAAGTCAGTGAAATTGATCTATCCGTGCAGAAGCGGATATAATAATA-CAAGACGAGAAGACCCTTTGGAGCTTAAGGTACAAGATTTAAT-T--TACATCAAGCAAACCAATAAAAGTGATTAAACT---AGTAAAA-GATAAACCTCTACCTTCGGTTGGGGCGACCACGGAGTAAAAAACAACCTCCAAGCGGAACGGGCACAGCCCTAAAACCAAGAGAAACATCTCTAAGCCTCAGAAC-ACCTGACCAAAGAC---------GATCCGGCCT---AT-A-A--GCCGATCAACGAACCAAGTTACCCTAGGGATAACAGCGCAATCCTCTCTAAGAGTCCATATCGACGA-GGGGGTTTACGACCTCGATGTTGGATCAGGACATCCTAATGGTGCAGCCGCTATTAAGGGTTCGTTTGTTCAACGATTAATAGTCCTACGTGATCTGAGTTCAGACCGGAGTAATCCAGGTCAGTTTCT-ATCTGTAAAGCTATTTTTTCCTAGTACGAAAGGATCGGAAAAAGGGGGCC---------------------------------------------CATACTAA-
391
392 a score=-368.0
393 s hg17.chrM 3159 14 + 16571 AAGCGCCTTC--CCCC
394 s panTro1.chr3 35464935 15 - 209662276 AAGCACCCTC-GCCTC
395 s mm5.chrM 2601 16 + 16299 AAGCGCTCTCAACTTA
396 s canFam1.chrM 2592 16 + 16727 AGGCGCCTTAAAACTA
397 s galGal2.chrM 3925 14 + 16775 AGAACCCCTC--CCCC
398 s danRer1.chrM 3646 14 + 16596 AAGCACGCCCCACC--
399
400 a score=2194.0
401 s hg17.chrM 3173 6 + 16571 GTAAAT
402 s panTro1.chr3 35464950 6 - 209662276 ATAAAT
403 s mm5.chrM 2617 6 + 16299 ATTTAT
404 s canFam1.chrM 2608 6 + 16727 ATAGAT
405 s danRer1.chrM 3660 6 + 16596 CTAAAT
406
407 a score=1283.0
408 s hg17.chrM 3179 12 + 16571 G-ATATCATCTCA
409 s panTro1.chr3 35464956 12 - 209662276 G-ATGCTATCTCA
410 s mm5.chrM 2623 13 + 16299 GAATAAAATCTAA
411 s canFam1.chrM 2614 12 + 16727 G-AAGTCAACTCA
412
413 a score=-632.0
414 s hg17.chrM 3191 15 + 16571 ----ACTTAGTATTATACC
415 s mm5.chrM 2636 14 + 16299 ----ATAAAATAT-ATACG
416 s canFam1.chrM 2626 18 + 16727 ATCTAACCAGTTT-ATCTC
417
418 a score=3123.0
419 s hg17.chrM 3206 21 + 16571 CACACCC---ACCCAAGAACAGGG
420 s panTro1.chr3 35464984 22 - 209662276 CACACCC--TACCCAGGAACAGGG
421 s mm5.chrM 2650 24 + 16299 TACACCCTCTAACCTAGAGAAGGT
422 s canFam1.chrM 2644 21 + 16727 CTCATAA---GCCCGAGAAAAGGG
423
424 a score=273.0
425 s hg17.chrM 3227 1 + 16571 T
426 s panTro1.chr3 35465006 1 - 209662276 T
427 s mm5.chrM 2674 1 + 16299 T
428
429 a score=6671.0
430 s hg17.chrM 3228 83 + 16571 TTgttaagatggcagagcccggtaatcgcataaaacttaaaactttacagtcagaggttcaattcctcttcttaacaacaTAC
431 s panTro1.chr3 35465007 83 - 209662276 TTgttaagatggcagagcctggtaattgcataaaacttaaaattttataatcagaggttcaactccttttcttaacaATATGC
432
433 a score=300.0
434 s hg17.chrM 3311 1 + 16571 C
435 s panTro1.chr3 35465090 1 - 209662276 C
436 s galGal2.chrM 4062 1 + 16775 C
437
438 a score=699.0
439 s hg17.chrM 3312 5 + 16571 CATGG
440 s panTro1.chr3 35465091 5 - 209662276 TATAA
441 s galGal2.chrM 4063 5 + 16775 CCTAA
442 s danRer1.chrM 3825 5 + 16596 CTTAA
443
444 a score=2951.0
445 s hg17.chrM 3317 8 + 16571 CCAACCTC
446 s panTro1.chr3 35465096 8 - 209662276 TTAACCTT
447 s mm5.chrM 2760 8 + 16299 TTAATATC
448 s galGal2.chrM 4068 8 + 16775 CAAACCTT
449 s danRer1.chrM 3830 8 + 16596 TTAACCCC
450
451 a score=2100.0
452 s hg17.chrM 3325 5 + 16571 CTACT
453 s panTro1.chr3 35465104 5 - 209662276 CTCCT
454 s mm5.chrM 2768 5 + 16299 CTAAC
455 s rn3.chr3 129984747 5 + 170969371 CTTCT
456 s galGal2.chrM 4076 5 + 16775 CTAAT
457 s danRer1.chrM 3838 5 + 16596 CTAGC
458
459 a score=142225.0
460 s hg17.chrM 3330 184 + 16571 CCTCATTGTACCCATTCTAATCGCAATGGCATTCCTAATGCTTACCGAACGAAAAATTCTAGGCTATATACAACTACGCAAAGGCCCCAACGTTGTAGGCCCCTACGGGCTACTACAACCCTTCGCTGACGCCATAAAACTCTTCACCAAAGAGCCCCTAAAACCCGCCACATCTACCATCACC
461 s panTro1.chr3 35465109 183 - 209662276 ACTTATTATCCCCACTCTTATTGCTATAGCATTCCTTACACTCATCGAATGAAAAATCTTAGGCTATACACAACTATGCAAAGACCCAAA-ATTGTAGGTCCCTATGGGCTGCTTCAGCCATTCGCTGATGGAATAAAACTTTTCACCAAAGAACCCTTACGGCCCTCAACATCCACTATTACC
462 s mm5.chrM 2773 184 + 16299 ACTCCTCGTCCCCATTCTAATCGCCATAGCCTTCCTAACATTAGTAGAACGCAAAATCTTAGGGTACATACAACTACGAAAAGGCCCTAACATTGTTGGTCCATACGGCATTTTACAACCATTTGCAGACGCCATAAAATTATTTATAAAAGAACCAATACGCCCTTTAACAACCTCTATATCC
463 s rn3.chr3 129984752 171 + 170969371 ATTAATTATCTCCATTTTCATCACTATAGCATTTCTAACTTCTTTTGAATGGAAAAGAATAGGTAATATGTGATTATTAGAAGAACCACGCATTGTAGATCTCCATGGTTTCTTTTAACAACTTCCTGGTGATGTAAAACTTTTCATCAAAGCAACCTTATATCCATTAAC-------------
464 s canFam1.chrM 2769 184 + 16727 TCTTATTATCCCAATCCTTCTTGCCGTAGCCTTCCTCACCCTCGTTGAACGAAAAGTCTTAGGCTATATACAACTTCGAAAAGGACCTAATATTGTAGGCCCCTACGGCCTCCTTCAACCAATCGCAGACGCAGTAAAACTCTTCACAAAAGAACCTCTACGACCACTTACATCCTCTATATCA
465 s galGal2.chrM 4093 184 + 16775 CTATATTCTCCCCATCCTAATCGCCGTGGCCTTCTTAACACTTGTAGAACGAAAAATCCTAAGCTACATGCAGGCCCGAAAGGGCCCAAACATTGTGGGCCCTTTTGGTCTACTCCAACCCGTTGCAGACGGGGTAAAACTATTCATTAAAGAGCCAATCCGACCATCTACCTCCTCCCCCTTC
466 s danRer1.chrM 3843 184 + 16596 CTACGCCGTACCAGTATTAATTGCAGTAGCCTTCCTTACCTTAGTTGAACGAAAAGTGTTAGGCTATATACAACTCCGAAAAGGACCAAATGTAATAGGCCCCCGAGGACTGTTACAATCAGTAGCTGATGGCGTGAAACTTTTTATTAAAGAACCCATTCGACCATCTATGGCTTCTCCAATT
467
468 a score=563983.0
469 s hg17.chrM 3514 816 + 16571 CTCTACATCACCGCCCCGACCTTAGCTCTCACCATCGCTCTTCTACTATGAACCCC-CCTCCCCATACCCAACCCCCTGGTCAACCTCAACCTAGGCCTCCTATTTATTCTAGCCACCTCTAGCCTAGCCGTTTACTCAATCCTCTGATCAGGGTGAGCATCAAACTCAAACTACGCCCTGATCGGCGCACTGCGAGCAGTAGCCCAAACAATCTCATATGAAGTCACCCTAGCCATCATTCTACTATCAACATTACTAATAAGTGGCTCCTTTAACCTCTCCACCCTTATCACAACACAAGAACACCTCTGATTACTCCTGCCATCATGACCCTTGGCCATAATATGATTTATCTCCACACTAGCAGAGACCAACCGAACCCCCTTCGACCTTGCCGAAGGGGAGTCCGAACTAGTCTCAGGCTTCAACATCGAATACGCCGCAGGCCCCTTCGCCCTATTCTTCATAGCCGAATACACAAAC-ATTATTATAATAAACACCCTCACCACTACAATCTTCCTAGGAACA---------ACATATGACGCACTCTCCCCTGAACTCTACACAACATATTTTGTCACCAAGACCCTACTTCTAACCTCCCTGTTCTTATGAATTCGAACAGCATACCCCCGATTCCGCTACGACCAACTCATACACCTCCTATGAAA----AAACTTCCTACCACTCACCCTAGCATTACTT--ATATGATATGTCTCCATACCCATTACAATCTCCAGCATTCCCCCTCAAACCTA-----AGAAATATGTCTGA---TAAAAGAGTTACTTTGATAGAGTAAATAATAGGAG-----------------------------------------------------------------------CTTAAACCCCC------TTATTTc
470 s panTro1.chr3 35465292 811 - 209662276 CTTTATATTATTGCTTCAACACTAGCCCTTTCCATTGCTCTCCTTTTATGAACTCC-CCTCCCTATACCAGATCGTCTAATTAATTTTAATATAGGCCTCCTATTTATACTAGCAACATCAAGCCAGGCTGTCTACTCTAT-----GATCAGAATGAGCATCAAATTCAAAATATGCACTGATCAGTGCATTACGAGCTGTGGCCCAGACAATTTCATGTAAGGTCACCCTAGCCATTATCCTGCTATCAGTTCTACTGATAAGCGGCTCATTTAACTTATACACACTCATCACAATGCAAGAATTCCTCTGACTGCTCCTACCATCGTGGCCTCTAGCCATAATATGATTCATCTCCACTCTAGCAGAAACTAACCAAGCACCTTTTGATCTAGCAGAAGGAGAGTCAGAGTTAGTCTCAGGCTTCAACATTGAATACGCCACAAGGTCATTTGCCCTCTTCTTTATAGCAGAATATATGAAT-ATTATCATAATAAATGCCCTAACTACTACTATTTTCCTAGGAGCACTACACACTATATAT---------TTACCAGAACTGTACACCACAAATTTCATTACCAAGACCCTTCTTTTAACCACTCTATTTTTATGAATTCGAATGGCATACACTCGATTCCACTATGACCAACTCATACATCTTTTATGAAA----AAACTTCCTACCACTTATGCTAGCATT--TTGCATATGATATATCTCAATGCTTGTCCTAATTTCCAGCATCCCACCCCAAACATA-----GGAAATATGTCAGA---CAAAAGAATTACTTTGATAGAGTAAACAATAGAGG-----------------------------------------------------------------------TTAAAATCCTC------TAATTTc
471 s mm5.chrM 2957 815 + 16299 TTATTTATTATTGCACCTACCCTATCACTCACACTAGCATTAAGTCTATGAGTTCC-CCTACCAATACCACACCCATTAATTAATTTAAACCTAGGGATTTTATTTATTTTAGCAACATCTAGCCTATCAGTTTACTCCATTCTATGATCAGGATGAGCCTCAAACTCCAAATACTCACTATTCGGAGCTTTACGAGCCGTAGCCCAAACAATTTCATATGAAGTAACCATAGCTATTATCCTTTTATCAGTTCTATTAATAAATGGATCCTACTCTCTACAAACACTTATTACAACCCAAGAACACATATGATTACTTCTGCCAGCCTGACCCATAGCCATAATATGATTTATCTCAACCCTAGCAGAAACAAACCGGGCCCCCTTCGACCTGACAGAAGGAGAATCAGAATTAGTATCAGGGTTTAACGTAGAATACGCAGCCGGCCCATTCGCGTTATTCTTTATAGCAGAGTACACTAAC-ATTATTCTAATAAACGCCCTAACAACTATTATCTTCCTAGGACCCCTATACTATATCAAT---------TTACCAGAACTCTACTCAACTAACTTCATAATAGAAGCTCTACTACTATCATCAACATTCCTATGGATCCGAGCATCTTATCCACGCTTCCGTTACGATCAACTTATACATCTTCTATGAAA----AAACTTTCTACCCCTAACACTAGCATTATGT--ATGTGACATATTTCTTTACCAATTTTTACAGCGGGAGTACCACCATACATATA------GAAATATGTCTGA---TAAAAGAATTACTTTGATAGAGTAAATTATAGAGG-----------------------------------------------------------------------TTCAAGCCCTC------TTATTTC
472 s rn3.chr17 3179538 758 + 97307196 CTTTTTATCATTGCCCCAACCCCACCCCTCACTGTAGCACT----CTATGGATTCCATCTTTTTACCGCTCAATCCCTAACAAACATAGACCATGCGAT----TTTGTTCTAGCTACTTGGAGCCCATCAGTCGACTCGGTTTTATGACTGGAGTGAGTTTCAGCTCCTAAATTCGCAA-GAGTGGAGCCTCCTGAGCTGTAGTTCAGGC----TCAC-TGGAGTAACACTGGTTGCCATTC---TATCAAGTCGACTAATAAACGGACCGCTTACCCCACAGACACTGATTTATACCCAAGCGCATGTATTATTACTTCCACCGAGATGACCCC-AGCCACAATGTGATTCATCTCTCCACTAGCAGAAACCAATAGGACAGTGTTTGACCTAACAAAA------------TTAATACCA---TCCTACATTGGATATACTGCAGGACCATTTACTCTA-TCTTTATGTTGAAGCACACTACCAATTACTGTAATCAATACCCAAATACCCATACCTCCCTTAGAAGTATTGTATGATACCCTC---------CCTCCAGAAATTTTTATAAT---TTTTATAGTTAGAACTTTGCTTCTCACCACTACAGTTTTATAAAATTGAGCGTCTTTCCCTTAATTTTGACATAACCAACTAGTACATTTGTCATGAAGTAATAAACTTTCT--------------------GT--GTGAGACCAATTTCCATCTCTATTTTTATATC---AACCCTCCTCTATGCATA-------GAACACATCTAG---TAAAGG--TTAGTATGGTGTAATAAACAATAGATG-----------------------------------------------------------------------TTTAGTCTGTC------TTATTTC
473 s canFam1.chrM 2953 816 + 16727 ATATTCATCCTAGCCCCCATTCTAGCTCTATCACTAGCCCTAACTATGTGAATTCC-CCTCCCAATACCCTACCCACTCATTAATATAAACTTGGGAGTCCTATTCATACTAGCAATATCAAGCCTCGCCGTGTACTCCATCCTCTGATCAGGATGAGCCTCAAACTCCAAATACGCCCTAATCGGAGCCCTTCGAGCAGTAGCTCAAACAATCTCATATGAAGTAACGCTAGCAATTATTCTTCTATCAGTCCTCCTAATAAACGGGTCATTTACACTATCCACGCTAATTATTACCCAAGAACATATATGATTAATCTTTCCGGCCTGACCCCTAGCCATGATATGATTCATCTCTACCCTAGCAGAAACTAATCGAGCCCCCTTCGACTTAACTGAAGGAGAATCCGAACTAGTCTCTGGATTTAACGTAGAGTATGCAGCAGGTCCTTTCGCCCTATTCTTTCTAGCAGAGTACGCAAAT-ATTATTATAATAAACATCCTCACAACAATTCTGTTCTTCGGCGCATTCCACAACCCATTC---------ATACCAGAACTCTACTCTATTAACTTCACTATAAAAACCCTCTTATTAACCATCTGCTTCCTATGAATTCGAGCATCATACCCTCGATTCCGCTACGATCAGTTAATACACTTATTATGAAA----AAATTTTCTACCCTTAACTTTAGCCCTATGC--ATATGACATGTTGCCTTACCCATTATCACCGCAAGTATCCCACCCCAAACATA-----AGAAATATGTCTGA---TAAAAGAGTTACTTTGATAGAGTAAATAATAGAGG-----------------------------------------------------------------------TTTAAATCCTC------TTATTTc
474 s galGal2.chrM 4277 892 + 16775 CTCTTCATTATTACTCCAATCCTAGCACTACTCCTAGCCCTGACTATTTGAGTCCC-CCTCCCACTACCATTCCCCCTTGCAGACCTCAACCTAGGACTACTATTTCTCCTAGCCATATCAAGCCTAACTGTCTACTCTCTACTCTGATCCGGATGAGCATCAAACTCCAAGTATGCCCTAATCGGAGCCCTTCGAGCCGTCGCACAAACAATCTCATACGAAGTCACCCTAGCCATCATCCTGTTATCCACAATCATACTGAGCGGCAATTACACCTTAAGCACCCTGGCCATCACCCAAGAGCCCATCTACCTCATTTTTTCCGCATGACCCCTCGCAATAATATGATACATCTCTACCCTTGCTGAAACCAACCGCGCCCCATTTGACCTAACAGAAGGAGAGTCAGAGCTAGTCTCAGGATTTAATGTAGAATATGCCGCCGGACCATTCGCCATATTCTTCTTAGCCGAATACGCCAAC-ATTATACTAATAAACACACTAACCACCGTCCTATTCCTGAACCCAAGCTTCCTAAATCTC---------CCACCAGAATTATTTCCCATTGCACTCGCTACAAAAACCCTCCTCCTTTCATCCTCATTTCTATGAATCCGGGCCTCATATCCACGGTTCCGCTATGACCAACTAATACATCTTCTATGAAA----AAACTTCCTCCCCCTAACCCTAGCCTTATGC--CTCTGACATACCAGCATACCAATCAGCTACGCCGGCCTCC--CCCCAATCTAA-----GGAAGCGTGCCTGAAC-AAAAAGGATCACTATGATAAAGTGAAC-ATAGAGGTATAACAACCCTCTCACTTCCTTAATCCTAGAAAAGTAGGAATCGAACCTACACAGAAGAGATCAAAACTCTTCATACTCCCTCTATATTATTTT
475 s danRer1.chrM 4027 824 + 16596 TTATTTTTAACAGCTCCAGTTCTTGCACTAATCCTAGCAATAATGCTATGGGCACC-CATACCCATGCCCTATCCAGTACTCGACCTAAATCTTGGAATTTTATTTATTATAGCCATCTCAAGCCTAGCAGTATACTCAATCCTGGGATCAGGTTGAGCATCAAACTCAAAATACGCATTAATTGGGGCCTTACGAGCTGTAGCGCAAACAATTTCATATGAAGTTAGCCTAGGACTTATTCTATTATCTGCCGTTATTTTTTCTGGGGGATACACCCTACAAACATTTAATACAACTCAGGAAGACACATGACTTCTACTTCCACTATGACCATTAGCCATTATATGATTTATCTCAACGCTGGCAGAAACAAACCGAGCACCGTTCGATCTTACAGAGGGGGAATCAGAACTAGTCTCAGGCTTCAATGTAGAGTATGCAGCAGGACCATTTGCCTTATTCTTTTTGGCTGAGTACTCAAAT-ATTTTACTAATAAACACCCACTCAACAGTACTATTTTTAGGAGCATCGTTTACCCCAGAT---------GCACCTGAGCTAATAACAATCAGTATTGCAACCAAAACTGCAATACTATCTATTTTGTTTCTCTGAATACGAGCATCATACCCACGATTCCGATACGACCAACTTATGCATCTTATCTGGAA----AAACTTTCTTCCAATCACATTAGTTCTAGTA--CTATGACATATCGCCCTACCAATCGCACTAGCTGGTCTACCCCCACAAACATAACTCAAGAACCGTGCCCGAATGCTAAGGGGTCACTTTGATGGAGTGAACCATAGGGG-----------------------------------------------------------------------TTAAAATCCCC------TCGGTTC
476
477 a score=0.0
478 s hg17.chrM 4330 71 + 16571 taggactatgagaatcgaacccatccctgagaatccaaaattctccgtgccacctatcacaccccatccta
479
480 a score=15771.0
481 s hg17.chrM 4330 70 + 16571 taggactatgagaatcgaacccatccctgagaatccaaaattctccgtgccaccta--tcacaccccatcct
482 s panTro1.chr3 35466103 70 - 209662276 tagtactataggaatttaacctacctctgagaatccaaaattgtctgtgctaccta--tcacaccacgtcct
483 s rn3.chr17 3180296 70 + 97307196 TAGACTTACAGGAATCAAACCCAGTCTTTCGAATTCAAAAACTGCCTCACTACCCA--GTATGCCTTATTCT
484 s canFam1.chrM 3769 72 + 16727 tagaataataggcttcgaacctaatcttaagaattcaaagatcttcgtgctaccaaacttacactatattct
485
486 a score=910.0
487 s hg17.chrM 4400 1 + 16571 a
488 s panTro1.chr3 35466173 1 - 209662276 a
489 s mm5.chrM 3842 1 + 16299 A
490 s rn3.chr17 3180366 1 + 97307196 A
491 s canFam1.chrM 3841 1 + 16727 a
492
493 a score=149630.0
494 s hg17.chrM 4401 275 + 16571 AAGTAAGGTCAGCTAAA-TAAGCTATCGGGCCCATACCCCGAAAATGTTGG-TTATACCCTTCCCGTACTAATTAATCCCCTGGCCCAACCCGTCATCTACTCT-ACCATCTTTGCAGGCACACTCATCACAGCGCTAAGCTCGCACTGATTTTTTACCTGAGTAGGCCTAGAAATAAACATGCTAGCTTTTATTCCAGTTCTAACCAAAAAAATAAACCCTCGTTCCACAGAA---------------------GCTGCCATC-AAGTATTTCCTCACGCAAGCAACCGCATCCATAAT
495 s panTro1.chr3 35466174 275 - 209662276 GATTAAGGTCAGCTAAA-TAAGCTATTGGGCCCATATACCAAAAATGTTGG-TTATATCCTTCCCATACTAATTAATCCCTTACCTCAACTTATTAT-TGCCCTCACCGTTTTCACAGGAACTTTTATCACAATGCTAGGCTCACACTGATTTCTCATCTGAACAGGGCTAGAAACAAACATACTAGCCCTTACCCCAATCTTAATTAAAAAAATAAATCCCTGCTCTACAGAA---------------------GCAGCCACC-AAATATTTCCTTACACAAGCAACCACATCTGTAAT
496 s mm5.chrM 3843 276 + 16299 TAGTAAGGTCAGCTAAT-TAAGCTATCGGGCCCATACCCCGAAAACGTTGGTTTAAATCCTTCCCGTACTAATAAATCCTATCACCCTTGCCATCATCTACTTC-ACAATCTTCTTAGGTCCTGTAATCACAATATCCAGCACCAACCTAATACTAATATGAGTAGGCCTGGAATTCAGCCTACTAGCAATTATCCCCATACTAATCAACAAAAAAAACCCACGATCAACTGAA---------------------GCAGCAACA-AAATACTTCGTCACACAAGCAACAGCCTCAATAAT
497 s rn3.chr17 3180367 265 + 97307196 TAGTAAGGTCA-TGAGA-TGCACCACTGGGCACA-ATCCCCCGAGCATTTG-CTACAGTTTCCCTCTATTAAT-AATCCCATA----------------------GCCATTACATCAAGCTCACTCATCATTATATTTAGTCCACACTTACTATCTACATGACCAGA-CTAGAAATAAGCACACAAGCATGAGTCCTGATTTTTATTAACAAATTG------TGAACTATGGAAGCAGGAGATGGATTTCTTAATGCGACTGCCTAAGTAATTCAT-GTGCAAACCACTACATCCTTACT
498 s canFam1.chrM 3842 277 + 16727 CAGTAAGGTCAGCTAAATTAAGCTATCGGGCCCATACCCCGAAAATGTTGGTTTATACCCTTCCCGTACTAATAAAACCCCCTATTCTCATTATCATCATAGCA-ACTATCATGACAGGAACCATAATCGTCATACTAAGCTCGCACTGATTACTGATCTGAATTGGATTCGAAATAAACATGCTAGCCATCATCCCTATTCTCATAAAAAAGTACAATCCACGAGCCATAGAG---------------------GCCTCTACA-AAATATTTTCTTACACAAGCTACAGCCTCAATATT
499 s galGal2.chrM 5170 276 + 16775 TAGTAAGGTCAGCTAAC-TAAGCTATCGGGCCCATACCCCGAAAATGATGGTTTAACCCCTTCCCCTACTAATGAACCCCCATGCAAAACTAATCTGCACAGTA-AGCCTCATCATGGGAACCAGCATCACAATCTCCAGCAACCATTGAATCTTAGCCTGAACAGGCTTAGAGATCAACACCTTAGCCATCATCCCCCTCATCTCCAAGTCACACCACCCCCGAGCGATTGAA---------------------GCCACTATC-AAATATTTCCTCACCCAATCAACTGCATCAGCCCT
500 s danRer1.chrM 4922 276 + 16596 GGATGAGGTCAGCTAAT-TAAGCTACCGGGCCCATACCCCGAACATGATGGTTAAAGTCCCTCCTTCATCAATGAACCCTTATGTCCTTATAATTTTAATATCC-AGCCTAGGTCTAGGAACCACATTAACTTTTTCTAGCTCACACTGAATTTTAGCCTGAATAGGATTAGAAATTAATACTTTAGCAATTGTCCCTCTAATAGCACAACAACACCACCCACGGGCAGTAGAA---------------------GCCACCACA-AAATACTTCCTTATTCAAGCTGCTGCCGCAGCAAT
501
502 a score=31081.0
503 s hg17.chrM 4676 152 + 16571 CCTTCT---------AATAGCTATCCTCTTCAACAATATACTCTCCGGACAATGAA-----CCATAACCAATACTACCAATCAATACTCATCATTA--ATAATCATAATGGCTATAGCAATAAAACTAGGAATAGCCCCCTTTCACTTCTGAGTCCCAGAGGTTACCC
504 s panTro1.chr3 35466449 150 - 209662276 TCTCAT---------AACAGATATCCTTTCCAATAACCTGTTCTCCGGACAATGAA-----CTATAAT--ACACTATCAATCAATTCTTATCCTTA--ATAATAATAGTGGCCCTAGTAATAAAACTAGGAATAGCCCCCTTTCACTTCTGAGTCTCAGAGGTAATTC
505 s mm5.chrM 4119 152 + 16299 TATCCT---------CCTGGCCATCGTACTCAACTATAAACAACTAGGAACATGAATATTTCAACAAC--AAACAAACGGT-----CTTATCCTTAACATAACATTAATAGCCCTATCCATAAAACTAGGCCTCGCCCCATTCCACTTCTGATTACCAGAAGTAACTC
506 s rn3.chr3 129986043 145 + 170969371 TTTAATGGACAAATAATTAGTTATTAAATTCAGAAAAATA--------AGAATGTA-----AAATCATTTTGTGGATTAATTAATACT----------GTAACAGTAATTCTTCTGATAAAAAAATCATGCTTTTTTCCATTCTACATTTGAATACCAGAAGCCATTC
507 s canFam1.chrM 4119 152 + 16727 ACTAAT---------AATAGGAGTCACTATCAACCTCCTTTACTCCGGCCAATGGG-----TAATCTCAAAAATCTCAAACCCCATCGCATCCATC--ATGATAACCACTGCCCTAACAATAAAACTAGGCCTATCTCCATTCCACTTCTGAGTTCCCGAAGTAACAC
508 s galGal2.chrM 5446 152 + 16775 AATCCT---------CTTCTCGAGCATAACCAACGCCTGATCCACCGGACAATGAG-----ACATTACACAACTAAACCACCCGACATCATGCCTA--ATATTAACAATAGCAATCGCAATCAAATTAGGACTAGTCCCATTCCACTTCTGATTCCCAGAAGTACTCC
509 s danRer1.chrM 5198 152 + 16596 AATTCT---------ATTCACAAGTACAACAAATGCCTGAATTTCAGGACAATGGG-----ATGTTACAGGTATACCAGGCCCAGCCACCAGTACA--GCAATAATGTTTGCATTGGCTCTCAAAATCGGTCTAGCACCAATACATTTTTGATTACCAGAAGTTCTTC
510
511 a score=123662.0
512 s hg17.chrM 4828 652 + 16571 AAGGCACCCCTCTGACATCCGGCCTGCTTCTTCTCACATGACAAAAACTAGCCCC---CATCTCAATCATATACCAAATCTCTCCCTCACTAAACGTAAGCCTTCTCCT--CACTCTCTCAATCTTATCCATCATAGCAGGCAGTTGAGGTGGATTAAACCAAACCCAGCTACGCAAAATCTTAGCATACTCCTCAATTACCCACATAGGATGAATAATAGCAGTTCTACCGTAC--------------------AACCCTAACATAACCATTC--TTAATTTAACTATTTATATTATCCTAACTACTACCGCATTCCTACT-ACTCAACT------TAAACTCCAGCACCACGACCCT-ACTACTATCTCGCACC--TGAAACAAGCTAACATGACTAA---CACCCTTA---ATTCCATCCACCCTCCTCTCCCTAGGAGGCCTGCCCCCGCTAACCGG----CTTTTTGCCCAAATGGGCCATTATCGAAGAATTCACAAAAAACAATAGCCTCATCATCCCCACCATCATAGCCACCATCACCCTCCTTAACCTCTACTTCTACCTACGCCTAATCTACTCCACCTCAATCACACTACTCCCCA---TATCTAACAACGTAAAAATAAAATGACAGTTTGAACATACAAAAC---CCACCCCATTCCTCCCCACACT--------CATCGCCCTTACCACGCTACTCCT
513 s panTro1.chr3 35466599 644 - 209662276 AGGGAATCTCTTTGATGTCTGGTATACTTCTCCTCACATGACAAAAACTAGCTCC---TATCTCAATTGTGTTTCAAA-CTTTTCATCAACAAACACGAACATCCTCCTGTCAC------AATCCTATCCATTATAGTGGGTGGTTGAGGGGGACTTAATCAAAC--AACTGTGTAAAATCCTAGCCTACTCCTCAGTCACTCACATAGGTTGAACAACAGCAGTACTAATTTAT--------------------AATCCAAACATTACTACCC--TAAACCTGATTATTTACTTTATCCTAACAACAACCGCATTTCTAGC-ACTCAACCAGAGTATAA------GCACCAGAACCCT-ATCACTATCTCACACC--TGAAACAAATGAGCATGGTTGA---CACCTGTA---ATTCCACTAATTCTACTATCCTTAGGAGGTTTATCCCCATTAACAGGGTTACTTTCT----AAATGAATCATCATTCAAGAATTTACAAAAAACAATAGCCTTACTACCCCAATCATTATAGTTAACATAACC-TACTCAACCTGTACTTTTATATATGCCTAGTCTATTCCTTCTCAGTAACACTATTCCCCA---TATCTAACAATATGAAAATAAAATGACAATTTGAAAACACAGAAC---CCACACTACTCTTCCCCCCACT-----TGTCATCTCTTCTACC---CTCCTCTT
514 s mm5.chrM 4271 652 + 16299 AAGGGATCCCACTGCACATAGGACTTATTCTTCTTACATGACAAAAAATTGCTCC---CCTATCAATTTTAATTCAAATTTACCCGCTACTCAACTCTACTATCATTTT--AATACTAGCAATTACTTCTATTTTCATAGGGGCATGAGGAGGACTTAACCAAACACAAATACGAAAAATTATAGCCTATTCATCAATTGCCCACATAGGATGAATATTAGCAATTCTTCCTTAC--------------------AACCCATCCCTCACTCTAC--TCAACCTCATAATCTATATTATTCTTACAGCCCCTATATTCATAGC-ACTTATAC------TAA---ATAACTCTATAACCATCAACTCAATCTCACTTCTATGAAATAAAACTCCAGCAATAC---TAACTATA---ATCTCACTGATATTACTATCCCTAGGAGGCCTTCCACCACTAACAGG----ATTCTTACCAAAATGAATTATCATCACAGAACTTATAAAAAACAACTGTCTAATTATAGCAACACTCATAGCAATAATAGCTCTACTAAACCTATTCTTTTATACTCGCCTAATTTATTCCACTTCACTAACAATATTTCCAA---CCAACAATAACTCAAAAATAATAACTCACCAAACAAAAACTAAAC---CCAACCTAATATTTTCCACCCT-----AGCTATCATAAGCACA---ATAACCCT
515 s rn3.chr17 3180986 514 + 97307196 AAGGGGGAGCACTAAAACTTAGCTCGCTTCACTTTGGAATACAAGGAATAACCCAAGGCATTTCCCTAATGTTTGTAATACCTTTCAAACTGA----------CCCCTC--AAATATCCCAATTTTCATTGTTATCTCTGATATATCA--TGTATTAAAGCAAAG-----TATGGGAAAACCTGGTGTAGTAAGCATTTGTCCAGATAGAATGAATAACAGCTGTTATTGTCTACTGTAATATTGCCTGATCCCCAGTTCATATGCCATTAGCCAGTATTCTCAACTCTTTATATTAATTTAAAT-------TATTTATATTAATTTAAAT------TAA----------------CCT-ACCAG-------------CGAAGTAAATTACCTT---TAA---CAGTTTTAACCATCCCAACAATCTTCTT--------------TGACCCTGTTAATGGA----ATTTCTACTTAAGTGAGATGTCAT----------------------------------------------------ATGACT-TCTCTAGTCTATATT----------CCTAATCTTATTTCTATTACAGACATGAC--------------------------ACAAAATAATGACTT-------CAGCAC---CTAAACTACTTAT----GAGCT--------CCTCCTATGTGTT--GTGACTCCT
516 s canFam1.chrM 4271 655 + 16727 AGGGAATTACGCTCATATCAGGAATAATCCTACTAACATGACAAAAAATCGCACC---TATATCCATCCTATATCAAATCTCTCCATCAATTAACACTAACCTTCTTAT--ACTAATAGCCCTTACATCCGTTCTAGTAGGAGGCTGAGGCGGACTAAATCAAACTCAACTACGAAAAATCATAGCATACTCCTCCATTGCCCACATAGGCTGAATAGCCGCTATCATTACTTAT--------------------AACCCTACAATAATAGTTC--TAAACTTAACTTTATATATTCTAATAACACTATCTACCTTCATACT-ATTTATAT------TAAACTCATCCACCACGACCCT-ATCTTTATCCCACATA--TGAAACAAATTTCCCCTAATCA---CTTCCATA---ATCTTAATCTTAATACTATCCCTAGGAGGACTACCCCCATTATCTGG----CTTCATCCCCAAATGAATAATTATTCAAGAATTAACGAAAAATAACATAATTATTATTCCAACACTAATGGCTATCACCGCTCTACTTAACTTATATTTCTACCTGCGACTCACATATAGCACCGCACTTACCATATTTCCAT---CCACAAACAACATAAAAATAAAATGACAGTTCGAATACACAAAAAAGGCAACCCTATTACCCCCCTTAAT-----TATTACCTCAACTATA---CTACTCCC
517 s galGal2.chrM 5598 649 + 16775 AAGGCTCCTCCCTAATCACTGCCCTACTACTCTCCACCCTAATAAAACTCCCCCC---AATCACACTCCTCCTCCTAACATCACAGTCTCTTAATACCACCTTACTCAC--CCTCCTAGCAATCTCCTCCACCCTAATCGGAGGCTGAATGGGCCTAAACCAAACACAAACACGAAAAATCCTAGCCTTCTCATCCATCTCCCATTTAGGATGAATAATTATAATTATCTCCTAT--------------------AACCCACAACTCACTATTC--TCACCTTCATCCTCTACACAATTATGACCTCAACTGTATTCCTATC--CCTAGCC------CAAATCAAAGTCCTAAAACTGTCAACACTACTCATCTCA--TGAACTAAAACCCCAATACTAAATGCAACTGTA---AT---ACTAACCCTCCTCTCCCTAGCTGGCCTCCCACCATTAACCGG----CTTCATGCCAAAATGACTCATTATCCAAGAACTAACCAAACAAGAAATAACCCCAATAGCCACAATCATCACAATACTATCACTCCTAAGCCTATTCTTCTACCTCCGACTTGCATACCACTCAACAATCACACTCCCCCCCAACTCATCAAACCACATAAAACTCTGA--------CGAACTAACAAAAC---CCTAAACACCCCCACCGCCATTCTAACTGCGCTATCAACCACC---CTATT---
518 s danRer1.chrM 5350 652 + 16596 AAGGATTAGATCTGTTGACAGGACTAATTTTGTCAACCTGACAAAAACTTGCCCC---AATAGCATTAATTATCCAAACGACCCAAACCACTGACCCTCTTATTCTTAC--ATCACTAGGAATTGCTTCCTCTCTCATTGGAGGGTGAAGCGGACTTAACCAAACCCAACTCCGAAAAATTCTAGCTTATTCATCAATTGCCCACATAGGGTGAATAATTATTGTTATCCAGTAC--------------------GCTCCGCAACTTACTCTGA--TTGCTTTAGGAACATATATCTTTATAACATCCGCGGCATTCCTTAC-TTTAAAAG------TATTATCAGCCACAAAAATTAA-CACCCTAACAACGACC--TGACCGAAAAGCCCAATCCTGG---CAGCAATT---GCTACTTTAGTTATATTATCACTGGGAGGACTTCCCCCACTGACGGG----ATTCATACCAAAATGATTAATCCTACAAGAGTTAACGAAACAAGACCTACCAGCCACAGCTACTATCATGGCGCTTACCGCCCTCCTAAGCTTATTTTTTTACCTACGTCTATGTCATGCAATAACATTAACGACTTCACCAA---ACACTATCAATTCAGCCCCTCACTGACGGGTACAAACGACCCAAA---ACTCACTACCCCTAACAATCTC-----TGTTACTGTTACTATA---GGACTTTT
519
520 a score=211260.0
521 s hg17.chrM 5480 399 + 16571 ACCTATCTCCCC------TTTT------ATACTAA---TAATCTTATAGAAATTTAGGTTAAATA-----CAGACCAAGAGCCTTCAAAGCCCTCAGTAAGT--TGCAA--TACT--TAATTTCTGCAACAG-------CTAAGGACTGCAAAACCCCACTCTGCATCAACTGAACGCAAATCAGCCACTTTAATTAAGCTAAGCCCTT--ACTAGACCAATGGGACTTAAACCCACAAACA---CTTAG-----------TTAACAGCTAAGCACCCTAATCAACTGGCTTCAATCTACT-TCTCCCGCCGCC----GGGAAAAAAGGCGGGAGAAGCCCCGGCAGG-TTTGAAGCTGCTTCTTCGAATTTGCAATTCAATATG-A-AAA-TCACCTCGGAG---CTGGTAAAAAGAGGCCT--AACCCCTGTCTTTAGATTTACAGTCCAATGCTT---CACT
522 s panTro1.chr3 35467243 404 - 209662276 ACCCATCTCTCC------ATTA------ATACTAACTATAA-CTTA--GAAATTTAGGTTAAATA------AGACCAAGAACCTTCAAAGCCCTTAGTAAGT-----AAGTTACTCTTAATTTCTGTAACAGA-----TCTAAACACTGCAAGACTCTATACTGCATCAACTGAACGCAAATCAACCGCTGTAATTAAGCTAAGCCCTT--ATGAGATTGGTGGAATTCAAACC-ACGAATAAAATTTAG-----------TTAACAGCTAAACACCCTAATCAACTGGCTTCAATTTACT----CCCACCGTCATTGGGGGAGAAAGGCAG-AGAAGCCCCAGCAGG-ATTGAAGCTGCTCCTTTGAATTTTCAGTTCAACATG-AGAAA-TCACCTCAGAG---CTGCTAAAAAGAGGCCTT-GACCTCTGTCTTTAGATTTACAGTCTAATGCTT----ACT
523 s mm5.chrM 4923 390 + 16299 ACCCCTAGCCCC------CC---------AACTAA---TTA-CCTA--GAAGTTTAGGATATACT------AGTCCGCGAGCCTTCAAAGCCCTAAGAAAACA-CACAAGTT-----TAACTTCTG-------------ATAAGGACTGTAAGACTTCATCCTACATCTATTGAATGCAAATCAATTGCTTTAATTAAGCTAAGACCTC-AACTAGATTGGCAGGAATTAAACCTACGAAAA---TTTAG-----------TTAACAGCTAAATACCCTATT--ACTGGCTTCAATCTACT----TCTACCGCCGAAAAAAAAAAATGGCGGTAGAAGTCTTAGTAGA-GATTTCTCTACACCTTCGAATTTGCAATTCGACATG-A-ATA-TCACCTTAAGACCTCTGGTAAAAAGAGGATTTAAACCTCTGTGTTTAGATTTACAGTCTAATGCTT----ACT
524 s rn3.chr14 86906642 384 - 112220682 ACTTACTTTCCC------TTCATCACCCCAACAAA---TCA-ATTA--GAAGTTTAGGATATTCT------AGTCCAAGAGCATTCAAAGCCCTAAGAAAACA-AATAAATT-----TAATTTCTG-------------ATAAGTACTGTAAGACTCTATCCTAAATCTACTGAATGCAAATCCATCTCTTTATTTAAGCTAAGACCTT-AACTATATTGGCAGGAATCAAGCCTGAGAAAA---TTTAAGAGTGAAAATTTTAAGAGTGAAATACCCTACC--TCTGAATTCAATCTAC-----CTCTTCTTCATATCAGAAAGGGGACAGGAGAAGCCTTAGTAAA-----------------------CAAAATTCCATGTC-A-TTA-TCACCTTAAAGA--TTGGTAAAAAGAGGGCTT-ACCCTTTATGTCTAGATTTCCAGTCAAATGCTT----ACT
525 s canFam1.chrM 4926 407 + 16727 ACTAACACCTAT------ATTA------TCAGTCT---TGG-ACTA--GGAGTTTAGGTTAGACC------AGACCAAGAGCCTTCAAAGCTCTAAGCAAGTGCTACACACT-----TAACCCCTG-ATCAAATCACCTCTAAGGGCTGCAAGAATCTATCTTACATCAATTGAATGCAAATCAAACACTTTAATTAAGCTAAGCCCTC--CCTAGATTGGTGAGCTTCTACCTCACGAAAT---TTTAG-----------TTAACAGCTAAATACCCTAGT-AACTGGCTTCAATCTACCTTCTCCCGCCGCG--TAGAAAAAAAAGGCGGGAGAAGCCCCGGCGGC-GTCTAGGCTGCTTCTTTGAATTTGCAATTCAATATG-A-AAATTCACCACGGAGC--TTGGCAAAAAGAGGACTTAAACCCCTATCTTTAGATTTACAGTCTAATGCTT----TTA
526 s galGal2.chrM 6248 382 + 16775 CCCCTTTCCCCC------CTAA------TTATTAC---CAT-ACTATAGAAACTTAGGATTAACTGTCACCAAACCAAAGGCCTTCAAAGCCTTAAATAAGA--GTTAAACT-CTCTTAGTTTCTG-CCCAA-------CTAAGACCAACAGGACATTAACCTGTATCTCCTGAATGCAAATCAGACGCTTTAATTAAGCTAAGGCCTCTACCTAGACAGATGGGCTTCGATCCCATACAAT---TTTAG-----------TTAACAGCTAAATGCCAACACCAATTGGCTTCTGCCTAC-----------------------------------AGACCCCGGCACA-CTTTAGTGTACATCAACGAGTTTGCAACTCATTATG-A-ACT-TCACTACAGAG---TCGATAAGAAGAGGAATTGAACCTCTGTAAAAAGGACTACAGCCTAACGCTTCAACACT
527 s danRer1.chrM 6002 408 + 16596 ACCACTGACCCCAGCCATCTTA------ATATTAA---CAA-CATA--GAGACTTAGGATAACCT------AGACCAAGAGCCTTCAAAGCTCTCAGTAGAA--GTGAAAAT-CTTCTAGTCTCTG-------------ATAGGACTTACA-GACGTTACTCCGCATCTTCTAAATGCAAATCAGATATTTTAATTAAACTAAAGCCCT--ACTAGATGGGAAGGCCTCGATCCTACAAAAT---CTTAG-----------TTAACAGCTAAGCGCCCAAGCCAGCGAGCATCCATCTACT-TTTCCCGCCGTT--GAACCCGGTAAGGCGGGAAAAGCCCCGGCAGGAGGTTTACCTGCGTCTTCAGATTTGCAATCTGATATGTA-TCA-TCACCACGAGGCC-ATGGTAGAAAAAGGACTCAAACCTCTGTCCGCGGAGCTACAATCCGCCGCCTAAACACT
528
529 a score=338602.0
530 s hg17.chrM 5879 388 + 16571 CAGCCATTTTACCTCACCCCCACTGATGTTCGCCGACCGTTGACTATTCTCTACAAACCACAAAGACATTGGAACACTATAC---CTATTATTCGGCGCATGAGCTGGAGTCCTAGGCACAGCTCTAAGCCTC--CTTATTCGAGCCGAGCTGGGCCAGCCAGGCAAC-CTTCTAGGTAACGACCACATCTACAACGTTATCGTCACAGCCCATGCATTT-GTAATAATCTTCTTC-ATAGTAATACCCATCATAATCGGAGGCTTTGGCAACTGACTAGTTCCCCTAATAATCGGTGCCCCCGATATGGCGTTTCCCCGCATAAACAACATAAGCTTCTGACTCTTACCTCCCTCTCTCCTACTCCTGC-TCGCATCTGCTATAGTGGAGGCCGGA
531 s panTro1.chr3 35467647 387 - 209662276 CAGCCACTTTACCTTTCCCCCACCTATGTTCATCAATCGTTGATTGTTTTCAACTAACCACAAAGATATCGGAACACTATACGTGCTAT-----GGCGCCTGAACCGGGGTAGTAGGCACCGCCTTAAGCCTT--CTAATTCGAGCAGAACTCGGCCAACCAGG-AACTCTGTTAGGAGATGATCGGATCTACAATGTTATTGTTACCGCCCACGCATTTCGTTATAATTTTCTTT-ATGGTAACACTGATCATGATAGGGGTTTTTGGCAACTGGCTAGTCCCTCTGACTATTGGTTGACTCGACATGGCATTCCCCTGAATAAATAATATCAGCTTCTGGCTTTTCCCCCTATCTTTTCTACTCCTCC-TTGCGTCTTCAATATTTCAAGCCAGT
532 s mm5.chrM 5313 377 + 16299 CAGCCATTTTACCT-----------ATGTTCATTAATCGTTGATTATTCTCAACCAATCACAAAGATATCGGAACCCTCTAT---CTACTATTCGGAGCCTGAGCGGGAATAGTGGGTACTGCACTAAGTATT--TTAATTCGAGCAGAATTAGGTCAACCAGG-TGCACTTTTAGGAGATGACCAAATTTACAATGTTATCGTAACTGCCCATGCTTTT-GTTATAATTTTCTTC-ATAGTAATACCAATAATAATTGGAGGCTTTGGAAACTGACTTGTCCCACTAATAATCGGAGCCCCAGATATAGCATTCCCACGAATAAATAATATAAGTTTTTGACTCCTACCACCATCATTTCTCCTTCTCC-TAGCATCATCAATAGTAGAAGCAGGA
533 s rn3.chr2 24388039 379 - 258222147 CAGCTGTTCTATCT----TCTAGCCAGGCTCATTAACCTTTTATGGTTTTCAACAAACCAGACACATATTGACATACTATTT----TATTATTTTGTGCTATAACTAGAGTAGGAGCTACTGCCCTAAGACTTTATTAATCCAAGTAAAATTATGACAAGCGGG-CACATTAGTTAGTGGTAATCAAATTTACATGGGCATTGTT------TATACGTTT-TAAATAACCTCTTTTAATAGTCATGACAGATATAAGTGAAGGACTTTTAA--TTGTTAGTTCTATTAGGGACTGAAGGCCCAGGTAGAACACTCGTTCAACTCCACAAAATAAATTTCTGGCCATTTGCTTCATCAGTTTGACTTCAGCTTTGCCTCCTCAATAGTAGAAACCAGT
534 s canFam1.chrM 5334 377 + 16727 CAGCCATTTTACCT-----------ATGTTCATTAACCGATGACTGTTCTCCACTAATCACAAGGATATTGGTACTTTATAC---TTACTATTTGGAGCATGAGCCGGTATAGTAGGCACTGCTTTGAGCCTC--CTCATCCGAGCCGAACTAGGTCAGCCCGG-TACTTTACTAGGTGACGATCAAATTTATAATGTCATCGTAACCGCCCATGCTTTC-GTAATAATCTTCTTC-ATAGTCATGCCCATCATAATTGGGGGCTTTGGAAACTGACTAGTGCCGTTAATAATTGGTGCTCCGGACATGGCATTCCCCCGAATAAATAACATGAGCTTCTGACTCCTTCCTCCATCCTTTCTTCTACTAT-TAGCATCTTCTATGGTAGAAGCAGGT
535 s galGal2.chrM 6630 380 + 16775 CAGCCATCTTACCT--------GTGACCTTCATCAACCGATGATTATTCTCAACCAACCACAAAGACATTGGCACTCTTTAC---CTAATTTTCGGCACATGGGCGGGCATAGCCGGCACAGCACTTAGCCTT--CTAATTCGCGCAGAACTAGGACAGCCCGG-AACTCTCTTAGGAGACGATCAAATTTACAATGTAATCGTCACAGCCCATGCTTTC-GTCATAATCTTCTTT-ATAGTTATACCCATCATGATCGGTGGCTTCGGAAACTGACTAGTCCCACTTATAATCGGTGCCCCAGACATAGCATTCCCCCGCATAAATAACATAAGCTTCTGACTCCTCCCTCCCTCCTTCCTTCTCCTAC-TAGCCTCATCTACCGTAGAAGCTGGG
536 s danRer1.chrM 6410 377 + 16596 CGGCCACCCTACCT-----------GTGACAATCACACGTTGATTTTTCTCAACTAATCATAAAGACATTGGCACCCTGTAT---CTAGTATTTGGTGCTTGAGCCGGAATAGTAGGGACCGCATTAAGCCTC--TTAATCCGAGCTGAACTTAGCCAACCAGG-AGCACTTCTTGGTGATGATCAAATCTATAATGTTATTGTTACTGCCCATGCTTTT-GTAATAATTTTCTTT-ATAGTAATACCCATTCTTATTGGGGGATTTGGAAACTGACTTGTGCCACTAATGATTGGGGCCCCCGATATGGCATTTCCCCGAATAAATAATATAAGCTTCTGACTTCTTCCACCCTCATTTCTTCTTCTAT-TAGCTTCTTCTGGAGTTGAAGCAGGA
537
538 a score=20468.0
539 s hg17.chrM 6267 22 + 16571 GCAGGAACAGGTTGAACAGTCT
540 s panTro1.chr3 35468034 22 - 209662276 GCTGGAACCAGCTGGACAGTTT
541 s mm5.chrM 5690 22 + 16299 GCAGGAACAGGATGAACAGTCT
542 s canFam1.chrM 5711 22 + 16727 GCAGGAACGGGATGAACCGTAT
543 s galGal2.chrM 7010 22 + 16775 GCCGGCACAGGATGGACAGTTT
544 s danRer1.chrM 6787 22 + 16596 GCTGGAACAGGATGAACAGTTT
545
546 a score=598760.0
547 s hg17.chrM 6289 707 + 16571 ACCCTCCCTTAGCAGGGAACTACTCCCACCCTGG----------AGCCTCCGTAGACCTAACCATCTTCTCCTTACACCTAGCAGGTGTCTCCT--CTATCTTAGGGGCCATCAATTTCATCACAACAATTATCAATATAAAACCCCCTGCCATA-ACCCA-ATACCAAACGCCCCTCTTCGTCTGATCCGTCCTAATCACAGCAGTCCTACTTCTCCTATCTCTCCCAGTCCTAG----CTGCTGGCATCACTATACTACTAACAGACCGCAACCTCAACACCACCTTCTTCGACCCCGCCGGAGGAGGAGACCCCATTCTATACCAACACCTATTCTGATTTTTCGGTCACCCTGAAGTTTATATTCTTATCCTACCAGGCTTCGGAATAATCTCCCATATTGTAACTTACTACTCCGGAAAAAAAGAACC-ATTTGGATACATAGGTATGGTCTGAGCTATGATATCAATTGGCTTCCTAGGGTTTATCGTGTGAGCACACCATATATTTACAGTAGGAATAGACGTAGACACACGAGCATATTTCACCTCCGCTACCATAATCATCGCTATCCCCACCGGCGTCAAAGTATTTAGCTGACTCGCCACACTCCACGGAAGCAATATGAAATGATCTGCTGCAGTGCTCTGAGCCCTAGGATTCATCTTTCTTTTCACCGTAGGTGGCCTGACTGGCATTGTATTAGCAAACTCATCACTAGAC
548 s panTro1.chr3 35468056 706 - 209662276 GTCCCCCTTTAGCAGGAAAC----------CTAGCACATGCAGAAGCCTCTGTGGCTCTGACCATCTTCTCGTTCCACTTAGCAGGTGTTTTTTTTCTATTTTAGGGGCCattaattttattat--taattattaaCATAAAACCCCCAACCATA-TCCCA-GTATCCAACACCGCTTTTCGTCTGCTCAGTCCGCATTATGGCAGTCCT-CTACTCCTTTCCCTCCCAGTCCTAG----CCGCCGGCATTGCTATGCTATTAACTGACCATAACCTCAACAGTACTTCTTTTGACCCTGCTTGTGG-GGTGACCCCATCTTGTTCCAACATTTATTCTGATTCTTTGGTCGCCCTGAAGTCTACATCCTTATCCTACCGGGCTTCGGGATAATCTCCCACATCGCAACATATTATTCTGGAAAAAAGGAACCCATTTGTGTACATGGGCATAGTATGAGCCATGATATCAGTTGGCATCTTTGGATTTATCGTATGGGCTCACCATATATTTACAGTAGGAATAGACATAGACACACTAGCATACTTCACCTCCACTACCATAATAATTGCCATCCCTACTGGCATCAAGGTCTTTAGCTGATTAGCTACCCTGCACCGCGGTAACATCAGATGATCTCCCGCAATATTCTGAGCCCTAGGATTCATTTTCCTTTACAGAGTAGGAGGTTTAACCGACATCGTACTAGCTAATTCATCACTAGAT
549 s mm5.chrM 5712 707 + 16299 ACCCACCTCTAGCCGGAAAT----------CTAGCCCATGCAGGAGCATCAGTAGACCTAACAATTTTCTCCCTTCATTTAGCTGGAGTGTCAT--CTATTTTAGGTGCAATTAATTTTATTACCACTATTATCAACATGAAACCCCCAGCCATA-ACACA-GTATCAAACTCCACTATTTGTCTGATCCGTACTTATTACAGCCGTACTGCTCCTATTATCACTACCAGTGCTAG----CCGCAGGCATTACTATACTACTAACAGACCGCAACCTAAACACAACTTTCTTTGATCCCGCTGGAGGAGGGGACCCAATTCTCTACCAGCATCTGTTCTGATTCTTTGGGCACCCAGAAGTTTATATTCTTATCCTCCCAGGATTTGGAATTATTTCACATGTAGTTACTTACTACTCCGGAAAAAAAGAACC-TTTCGGCTATATAGGAATAGTATGAGCAATAATGTCTATTGGCTTTCTAGGCTTTATTGTATGAGCCCACCACATATTCACAGTAGGATTAGATGTAGACACACGAGCTTACTTTACATCAGCCACTATAATTATCGCAATTCCTACCGGTGTCAAAGTATTTAGCTGACTTGCAACCCTACACGGAGGTAATATTAAATGATCTCCAGCTATACTATGAGCCTTAGGCTTTATTTTCTTATTTACAGTTGGTGGTCTAACCGGAATTGTTTTATCCAACTCATCCCTTGAC
550 s rn3.chr2 24388832 523 - 258222147 ATTTACCATTAACCAGAAAT----------CCTGCAGCGACAGGGGCTTCTGTAATTATTGCCATTTTCATGTTACTTTTAGAAAATGTTTCTT--CAGTTTTAAGAATTACTAATTACACCATAACATCCATGAAGATAATAACACCAGCTACAGGCACAGGTACCA---------------CTGAACAGCATTAATTACAGCTGTACTTTTACTCTTAGCTTATCTAATACTAGGACCTAGCTAGCGTCATCATGCTGTACACA-ACAATACTCTTAACATCTCTTTCTTCAATCCAGCGTGAGAAAAT--CCCACTGCTAGATCAATCATGATTCTTATCTTTTGGG-ATCCAGAAACACACGTTATCATCTGATCCTGACTAGGAATGATCTTGCATAGTGTGACA-ACTATTCTTGATCCAAAGAGTC-AAT-GGTTACATGGGG--TATCTGAGCCAGGATAGCGGTTGGTTTGTATGGCTTTCCTGCATGGGTCTACCATATTTTCGCAGTGGCA--------------------------------------------------CATTCC-----------------------------------------------------------------CATTATCCTCATTCATAGGCATGATCTTCTC----------------------------------------------------
551 s canFam1.chrM 5733 707 + 16727 ACCCCCCACTGGCTGGCAAT----------CTGGCCCATGCAGGAGCATCCGTTGACCTTACAATTTTCTCCTTACACTTAGCCGGAGTCTCTT--CTATTTTAGGGGCAATTAATTTCATCACTACTATTATCAACATAAAACCCCCTGCAATA-TCCCA-GTATCAAACTCCCCTGTTTGTATGATCAGTACTAATTACAGCAGTTCTACTCTTACTATCCCTGCCTGTACTGG----CTGCTGGAATTACAATACTTTTAACAGACCGGAATCTTAATACAACATTTTTTGATCCCGCTGGAGGAGGAGACCCTATCCTATATCAACACCTATTCTGATTCTTCGGACATCCTGAAGTTTACATTCTTATCCTGCCCGGATTCGGAATAATTTCTCACATTGTCACTTACTACTCAGGGAAAAAAGAGCC-TTTCGGTTATATAGGAATAGTATGAGCAATAATATCTATTGGGTTTTTAGGCTTTATCGTATGAGCTCACCATATGTTTACCGTAGGAATAGATGTAGACACACGAGCGTACTTTACGTCCGCCACTATAATTATCGCTATTCCAACGGGAGTAAAAGTATTTAGTTGACTGGCAACACTTCATGGAGGCAATATTAAATGATCTCCAGCTATGCTATGAGCTTTAGGGTTTATTTTCTTATTTACAGTAGGCGGGTTAACAGGTATTGTCCTAGCTAATTCGTCCTTAGAC
552 s galGal2.chrM 7032 704 + 16775 ACCCCCCTTTAGCCGGCAAC----------CTAGCCCACGCTGGCGCATCAGTAGACCTAGCCATCTT-TCATTAC--TTAGCAGGTGTTTCCT--CCATTCTAGGAGCCATCAACTTTATCACTACCATCATCAACATAAAACCCCCCGCACTG-TCACA-ATACCAAACACCCCTATTCGTATGATCCGTCCTCATTACTGCCATCCTACTACTCCTCTCCTTACCCGTCCTAG----CAGCTGGGATTACCATACTACTTACCGACCGCAACCTTAACACCACATTCTTCGACCCAGCTGGAGGAGGAGACCCAATCCTATACCAACACCTATTCTGATTCTTCGGTCACCCCGAAGTTTACATCCTCATCCTCCCAGGTTTCGGAATAATTTCCCACGTAGTAGCATACTATGCAGGAAAAAAAGAACC-ATTCGGATACATAGGAATAGTCTGAGCCATACTGTCAATCGGATTCCTTGGCTTCATTGTATGAGCCCACCATATATTCACAGTCCGAATGGACGTAGACACCCGAGCCTACTTTACATCAGCCACAATAATCATCGCCATCCCAACTGGTATTAAAGTCTTCAGCTGACTAGCAACCCTGCACGGAGGAACAATTAAATGAGACCCCCCTATGCTATGAGCCCTAGGATTCATCTTCCTCTTCACTATCGGAGGCCTAACGGGAATCGTCCTTGCTAACTCATCACTAGAT
553 s danRer1.chrM 6809 707 + 16596 ATCCACCTCTTGCAGGCAAC----------CTTGCCCATGCAGGAGCATCTGTTGATCTAACAATTTTTTCACTACACTTAGCAGGTGTTTCAT--CTATTCTTGGAGCAATTAATTTTATTACTACTACAATTAACATGAAGCCACCAACTATC-TCTCA-GTATCAAACTCCATTATTTGTATGAGCTGTCTTAGTTACAGCTGTACTACTTCTTTTATCTTTACCAGTGTTAG----CTGCCGGAATTACAATACTTCTTACAGACCGAAATCTTAACACAACGTTCTTTGACCCGGCAGGAGGGGGAGATCCAATTCTTTATCAACACTTATTTTGATTCTTTGGCCACCCAGAAGTCTACATTCTTATTTTACCAGGATTCGGCATTATCTCCCATGTTGTAGCATACTACGCAGGGAAAAAAGAACC-ATTCGGGTATATAGGAATAGTATGAGCTATAATGGCTATTGGTCTCTTAGGTTTTATTGTATGAGCCCATCACATATTCACTGTAGGAATGGATGTAGACACCCGAGCATACTTCACATCCGCCACAATGATTATTGCTATTCCAACTGGTGTAAAAGTATTTAGCTGATTAGCCACTCTCCACGGAGGAGCTATTAAATGAGAAACCCCTATACTATGGGCACTAGGATTTATTTTCTTATTTACAGTAGGAGGGTTAACCGGAATCGTTTTAGCCAACTCATCATTAGAC
554
555 a score=102002.0
556 s hg17.chrM 6790 88 + 16571 GAATAGACGTAGACACACGAGCATATTTCACCTCCGCTACCATAATCATCGCTATCCCCACCGGCGTCAAAGTATTTAGCTGACTCGC
557 s panTro1.chr3 35468556 88 - 209662276 GAATAGACATAGACACACTAGCATACTTCACCTCCACTACCATAATAATTGCCATCCCTACTGGCATCAAGGTCTTTAGCTGATTAGC
558 s mm5.chrM 6213 88 + 16299 GATTAGATGTAGACACACGAGCTTACTTTACATCAGCCACTATAATTATCGCAATTCCTACCGGTGTCAAAGTATTTAGCTGACTTGC
559 s rn3.chr14 86907881 83 - 112220682 GCCTTGATGGAGAAACATGAGATAACTTTACGTCAGCCATTATTATTATTGTAATTCCTACTGCTGC-----TATTTAGCTGACTTAC
560 s canFam1.chrM 6234 88 + 16727 GAATAGATGTAGACACACGAGCGTACTTTACGTCCGCCACTATAATTATCGCTATTCCAACGGGAGTAAAAGTATTTAGTTGACTGGC
561 s galGal2.chrM 7530 88 + 16775 GAATGGACGTAGACACCCGAGCCTACTTTACATCAGCCACAATAATCATCGCCATCCCAACTGGTATTAAAGTCTTCAGCTGACTAGC
562 s danRer1.chrM 7310 88 + 16596 GAATGGATGTAGACACCCGAGCATACTTCACATCCGCCACAATGATTATTGCTATTCCAACTGGTGTAAAAGTATTTAGCTGATTAGC
563
564 a score=448969.0
565 s hg17.chrM 6996 444 + 16571 ATCGTACTACACGACACGTACTACGTTGTAGCTCACTTCCACTATGTCCTATCAATAGGAGCTGTATTTGCCATCATAGGAGGCTTCATTCACTGATTTCCCCTATTCTCAGGCTACACCCTAGACCAAACCTACGCCAAAATCCATTTCACTATCATATTCATCGGCGTAA---ATCTAACTTTCTTCCC---ACAACACTTTCTCGGCCTATCCGGAATGCCCCGACGTTACTCGGACTACCCCGATGCATACACCACATGAAACATCCTATCATCTGTAGGCTCATTCATTTCTCTAACAGCAGTAATATTAAT----------------AATTTTCATGATTTGAGAAGCCTTCGCTTCGAAGCGAAAAGTCCTAATAGTAGAAGAACCCTCCATAAACCTGGAGTGACTATATGGATGCCCCCCACCCTACCACACATTCGAAG----AACCCGTATACATAAAA-
566 s panTro1.chr3 35468762 441 - 209662276 ATTGTCTTACACGACACATACTATGTTGTAGCCCATTTCCACTACGTTCTATCAATAGGAGCAATATTTGCCATTACAGGAGGCTTTGTCCACTGATTCCCCCTATTTTCAGGTTATACATTTAATCAGACCTATGCTAAAATCCACTTCACCATTATATTCATAGGTGTTA---ACTTAACCTTTTTTCC---ACAGCACTTCCTCAGCCTATCGGGTATGCCTCGACATTACTCCAATTACTCTGATGTGTACACCATATGAAATATTGTCTCATCCATAGGCTCATTTATCTCACTAACAGCTGTTATACTAAT----------------AATCGTTATGATCTGAGAGGCCTTTGCTTCAAAATGAAAAGT----ACAATTGCACAATCATCTACTAATTTAGAGTGACTTTACAGCTGTCCACCACCTTACCACACATTTGAAGAGCCAACCTGTGTG---AAAA-
567 s mm5.chrM 6419 444 + 16299 ATCGTGCTTCACGATACATACTATGTAGTAGCCCATTTCCACTATGTTCTATCAATGGGAGCAGTGTTTGCTATCATAGCAGGATTTGTTCACTGATTCCCATTATTTTCAGGCTTCACCCTAGATGACACATGAGCAAAAGCCCACTTCGCCATCATATTCGTAGGAGTAA---ACATAACATTCTTCCC---TCAACATTTCCTGGGCCTTTCAGGAATACCACGACGCTACTCAGACTACCCAGATGCTTACACCACATGAAACACTGTCTCTTCTATAGGATCATTTATTTCACTAACAGCTGTTCTCATCAT----------------GATCTTTATAATTTGAGAGGCCTTTGCTTCAAAACGAGAAGTAATATCAGTATCGTATGCTTCAACAAATTTAGAATGACTTCATGGCTGCCCTCCACCATATCACACATTCGAGGAACCAACCTATGTA---AAA--
568 s rn3.chr2 24389355 357 - 258222147 --------------------------------------------------------------------------CATTGTAGATTTCTTTCACTGATTTCCACTCTTTTGAGGTGATGCTCT--ATGAAAACTAAACAAAAAATCATTTTACAATTAAATTTGTAGGTGTTATCCGTTTAAATTTTCTGGCTAATCAATAATTTCACATTCTCT--------------TGCTATTCTTAACAGTC--------ATAGCCCATAAAATCTCAACTCATTGACAAATTCATTTATTAAACTAACAGTAGTAGTGCTAACTCTGTTAGTAGTGCTAATTCTTCATAACTTTCAGTGTTTATGCTTTAAAATAGGAAGTC---TCAGCAGAACATTCAACCACAAATCTTAAATGATTTTATTTCTAGCC--------ACCAGACATTCAAAGAACTTTCTCACGGA---AAA--
569 s canFam1.chrM 6440 444 + 16727 ATCGTTCTTCATGATACATATTATGTTGTGGCTCATTTTCACTATGTGCTTTCAATAGGAGCAGTTTTTGCCATTATGGGAGGATTTGCCCACTGATTCCCTTTATTCTCAGGTTATACTCTTAACGATACTTGAGCAAAGATTCACTTTACAATTATGTTTGTGGGAGTAA---ATATAACTTTCTTCCC---TCAACATTTCCTAGGTTTATCTGGAATACCTCGTCGATACTCTGACTACCCAGATGCATATACTACCTGAAATACCGTCTCCTCTATAGGATCGTTTATCTCGCTTACAGCGGTGATGCTTAT----------------AATTTTTATGATCTGGGAAGCCTTTGCATCCAAACGAGAAGTTGCTATAGTAGAACTTACTACAACTAACATTGAGTGACTACATGGATGTCCCCCTCCATACCACACGTTCGAAGAACCTACATATGTG---ATC--
570 s galGal2.chrM 7736 444 + 16775 ATTGCCCTTCATGACACCTACTATGTAGTCGCCCACTTCCACTATGTCCTCTCAATGGGGGCAGTTTTTGCCATTCTAGCAGGATTTACCCACTGATTTCCCCTCTTCACAGGCTTTACCCTACACCCATCATGAACCAAGGCACATTTCGGAGTAATATTTACCGGAGTTA---ACCTAACCTTTTTCCC---CCAACATTTCCTGGGCCTAGCTGGAATACCCCGACGATACTCAGATTACCCAGACGCCTACACACTATGAAACACACTATCCTCAATCGGCTCCTTAATTTCAATAACAGCCGTAATCATACT----------------CATATTCATCGTCTGAGAAGCCTTCTCAGCAAAACGAAAAGTACTCCAACCCGAATTAACTGCCACTAATATCGAATGAATTCATGGCTGCCCACCCCCATACCACACCTTCGAAGAACCAGCCTTTGTA---CAA--
571 s fr1.chrUn 326222607 444 + 349519338 ATCGTATTACACGACACCTACTACGTAGTTGCCCATTTCCACTACGTCCTCTCCATGGGTGCTGTATTTGCAATTATGGGTGCATTCGTACACTGATTCCCACTATTTTCAGGATACACACTCCACAGCACTTGAACTAAAATCCACTTCGGAGTAATGTTCATTGGTGTCA---ACCTAACCTTCTTCCC---TCAACACTTCCTTGGTCTAGCTGGAATACCTCGACGATACTCCGACTACCCCGACGCCTACGCCCTATGAAACTCCGTCTCCTCAATTGGCTCAATAGTCTCTCTAGTGGCAGTAATTATGTT----------------CCTCTTTATCCTCTGAGAGGCCTTCACCGCTAAGCGAGAAGTCCAATCAGTTGAACTAACAATGACAAATGTAGAATGACTACACGGGTGCCCTCCTCCTTACCACACATTCGAAGAGCCCGCCTTTGTC---CAA--
572 s danRer1.chrM 7516 445 + 16596 ATCGTACTACATGACACATACTACGTAGTAGCACACTTTCACTATGTTCTTTCAATAGGAGCTGTATTCGCTATTATAGCAGGCTTTGTTCACTGATTCCCACTATTTACAGGCTACACCCTAAACAGTGTATGAACAAAAATCCATTTCGGGGTTATATTTATCGGAGTAA---ATCTCACATTCTTCCC---ACAACATTTCCTAGGTTTAGCAGGAATACCACGACGGTACTCTGACTACCCAGACGCCTATGCACTCTGAAATACAGTATCTTCTATTGGGTCACTAATTTCTTTAGTAGCAGTAATCATGTT----------------CTTATTTATCTTATGAGAAGCCTTTACCGCCAAACGAGAAGTTCTGTCAGTTGAATTGACCGCAACAAATGTAGAATGATTACACGGCTGCCCTCCCCCCTACCACACATTTGAGGAGCCAGCATTCGTT---CAA-A
573
574 a score=81951.0
575 s hg17.chrM 7029 51 + 16571 CACTTCCACTATGTCCTATCAATAGGAGCTGTATTTGCCATCATAGGAGGC
576 s panTro1.chr3 35468795 51 - 209662276 CATTTCCACTACGTTCTATCAATAGGAGCAATATTTGCCATTACAGGAGGC
577 s mm5.chrM 6452 51 + 16299 CATTTCCACTATGTTCTATCAATGGGAGCAGTGTTTGCTATCATAGCAGGA
578 s rn3.chrUn 51520592 51 + 75822765 CACTTCTACTAGGTACTGTCTATAGGAGCGGCACTCGCTATTACAGCTGGG
579 s canFam1.chrM 6473 51 + 16727 CATTTTCACTATGTGCTTTCAATAGGAGCAGTTTTTGCCATTATGGGAGGA
580 s galGal2.chrM 7769 51 + 16775 CACTTCCACTATGTCCTCTCAATGGGGGCAGTTTTTGCCATTCTAGCAGGA
581 s fr1.chrUn 326222640 51 + 349519338 CATTTCCACTACGTCCTCTCCATGGGTGCTGTATTTGCAATTATGGGTGCA
582 s danRer1.chrM 7549 51 + 16596 CACTTTCACTATGTTCTTTCAATAGGAGCTGTATTCGCTATTATAGCAGGC
583
584 a score=-1119.0
585 s hg17.chrM 7440 9 + 16571 TCTAGACAa
586 s panTro1.chr3 35469203 9 - 209662276 CCTAAgtga
587 s rn3.chr2 24389713 9 - 258222147 CTTAAATGA
588 s canFam1.chrM 6884 9 + 16727 CAAAAAtaa
589 s galGal2.chrM 8181 8 + 16775 TGCAAGAA-
590 s fr1.chrUn 326223060 9 + 349519338 TCTATCCGA
591 s danRer1.chrM 7961 9 + 16596 TTCAATCAA
592
593 a score=0.0
594 s hg17.chrM 7449 66 + 16571 aaaaggaaggaatcgaaccccccaaagctggtttcaagccaaccccatggcctccatgactttttc
595
596 a score=14522.0
597 s hg17.chrM 7449 66 + 16571 aaaaggaaggaatcgaaccccccaaagctggtttcaagccaaccccatggcctccatgactttttc
598 s panTro1.chr3 35469212 65 - 209662276 gaaaggaaggaatcaaaactccagaaactggtttcaagccagtccaataacc-ccatgactctctc
599 s rn3.chr2 24389722 59 - 258222147 GAAACAA---GATTAAACCCCTATA----GGCTTCAAGTCAGTCCCATAAGCATCGTTATTTATCC
600 s canFam1.chrM 6893 66 + 16727 gaaaggaaggaatcgaaccccctaaaattggtttcaagccaatgtcataaccattatgtctttctc
601
602 a score=0.0
603 s hg17.chrM 7449 66 + 16571 aaaaggaaggaatcgaaccccccaaagctggtttcaagccaaccccatggcctccatgactttttc
604
605 a score=-609.0
606 s hg17.chrM 7515 1 + 16571 ---A
607 s panTro1.chr3 35469277 1 - 209662276 ---G
608 s mm5.chrM 6938 1 + 16299 ---A
609 s canFam1.chrM 6962 1 + 16727 ---C
610 s galGal2.chrM 8189 1 + 16775 ---A
611 s fr1.chrUn 326223069 4 + 349519338 GAAA
612
613 a score=172785.0
614 s hg17.chrM 7516 230 + 16571 AAAAG--------------------------------------------------------------------GTATTAGAAAAACC---ATTTCATAACTTTGTCAAAGTTAAATTATAGGC-TAA-A-TCCTATATATCTTA------------ATGG-CACATGCAGCGCAAGTAGGTCTACAAGACGCTACTTCCCCTATCATAGAAGAGCTTATCACCTTTCATGATCACGCCCTCATAATCATTTTCCTTATCTGCTTCCTAGTCCTGTATGCCCTTTTCCTAACACTCACAACAAAACTAACTAA-----TACTA
615 s panTro1.chr3 35469278 230 - 209662276 ATAAG--------------------------------------------------------------------ATATTAGTAAAATT---ATTCCATAACTTTGTCAAAGTTAGTTTATAGGT-TAA-A-TCCTATATGTCTTA------------ATGG-CTCATGCAGTTCAATTAGGACTTCAAGATGCTACATCCCTTATTATAGAAGAACTACTCACTTTCCATGACCACACTCTTACAATTATTTTCCTAATTAGTTCCCTAGTCCTATACATTATTTCCCTAATATTCACAACAAAATTAACTCA-----TACTA
616 s mm5.chrM 6939 233 + 16299 ATAAG--------------------------------------------------------------------ATATTAGTAAAATC--AATTACATAACTTTGTCAAAGTTAAATTATAGAT-CAATA-ATCTATATATCTTA---T--------ATGG-CCTACCCATTCCAACTTGGTCTACAAGACGCCACATCCCCTATTATAGAAGAGCTAATAAATTTCCATGATCACACACTAATAATTGTTTTCCTAATTAGCTCCTTAGTCCTCTATATCATCTCGCTAATATTAACAACAAAACTAACACA-----TACAA
617 s rn3.chr2 24389781 236 - 258222147 ATAAG-------------------------------------------------------------TTAT---GCATTAGAAATAGT---ATTATGTTACTTGGTCAGCATTAA-TTATAGTTATAA-A-TCATTTTAGTCTTC------------TTGGATATATCCATTCCAATTAGAATTTTAAGATTTCATATCATCTA--GTAAAAAATTTCCCAGGCTTGCATGAGAACATATTAATAAATGTAAT--TTAATAACTCTCTAGTCTGTTATGTTATTCTGTTGGTACCAATAACAAAATCAACTTACAAAGTACTA
618 s canFam1.chrM 6963 230 + 16727 AGGAG--------------------------------------------------------------------GTATTAGTAAAAC----ATTACATGACTTTGTCAAAGTTAAATTATAGGT-GAA-ACCCCTATATATCTCT------------ATGG-CGTACCCATTTCAACTCGGATTACAGGACGCAACCTCCCCTATTATAGAGGAGCTACTTCATTTTCATGACCATACACTAATAATTGTATTCTTAATCAGTTCTTTAGTTCTCTATATCATTTCACTAATATTGACTACAAAATTAACCCA-----TACAA
619 s galGal2.chrM 8190 297 + 16775 GGAAGGAATCGAACCCTCACATGTTGGTTTCAAGCCAACCGCATCAAACCACTTAATGCTTCTTTCTTATGAGACGTTAGTAAACCA---ATTACATAGACCTGTCAAGACTAAATCACAGGTGCAA-A-CCCTGTACATCTCA---T--------ATGG-CCAACCACTCCCAACTAGGCTTTCAAGACGCCTCATCCCCCATCATAGAAGAGCTCGTTGAATTCCACGACCACGCCCTGATAGTCGCACTAGCAATTTGCAGCTTAGTACTCTACCTTCTAACTCTTATACTTATAGAAAAACTATCATC-----AA---
620 s fr1.chrUn 326223073 305 + 349519338 GGGAGGAATCGAACCCCCGTAAACTGGTTTCAAGCCAGCTACAAAACCACTCTGTCACTTTCTTCATAAG---ACTCTAGTAAAATGGCAATTACACTACTTTGTCAAGGTAGAATTGTGGGT-TAA-ACCCCCACGTGTCTTA---T---TATTAATGG-CACATCCTTCACAACTAGGGTTTCAAGATGCAGCTTCACCAGTAATAGAAGAACTCCTTCACTTCCACGACCATGCTCTAATAATCGTATTCCTTATTAGCACATTAGTACTTTACATTATTGTTGCTATAGTCTCCACCAAACTAACTAA-----CAAGT
621 s danRer1.chrM 8046 243 + 16596 ATAAG--------------------------------------------------------------------ACATTAGCAAAAAC---ATTACACCACTTTGTCAAGGTGAAATTACAAGT-TAA-AACCTTGTATGTCTTAACCTAAATTCTAATGG-CACACCCTGCACAACTAGGATTCCAAGACGCAGCATCACCTGTAATAGAAGAACTTTTATGTTTTCACGACCATGCTTTAATAATTGTATTTTTAATCAGCACCTTAGTTCTATACATTATCATCGCAATAGTGTCAACCAAACTAACGAA-----TAAAT
622
623 a score=69426.0
624 s hg17.chrM 7746 69 + 16571 ACATCTCAGACGCTCAGGAAATAGAAACCGTCTGAACTATCCTGCCCGCCATCATCCTAGTCCTCATCG
625 s panTro1.chr3 35469508 69 - 209662276 GCACCATAGATGCCTAAGAAATCGAGACTGTGTGAACTATTTTGCTTGCCATTATCTTAATTTTAATTG
626 s mm5.chrM 7172 69 + 16299 GCACAATAGATGCACAAGAAGTTGAAACCATTTGAACTATTCTACCAGCTGTAATCCTTATCATAATTG
627 s canFam1.chrM 7193 69 + 16727 GCACAATAGACGCACAAGAAGTGGAAACAGTATGAACCATTCTACCCGCCATTATCCTAATCCTAATCG
628 s galGal2.chrM 8487 69 + 16775 ACACCGTAGATGCCCAAGAAGTTGAACTAATCTGAACCATCCTACCCGCTATTGTCCTAGTCCTGCTTG
629 s fr1.chrUn 326223378 69 + 349519338 ACATTCTAGACTCTCAAGAGATTGAAATTATCTGAACTATCCTACCAGCTATTATTCTTATCCTCATTG
630 s danRer1.chrM 8289 69 + 16596 TTATTCTAGATTCCCAAGAAATCGAAATCGTATGAACAGTCCTTCCGGCCATCATTCTTATTTTGATTG
631
632 a score=5283.0
633 s hg17.chrM 7815 6 + 16571 CCCTCC
634 s panTro1.chr3 35469577 6 - 209662276 CCCTCC
635 s mm5.chrM 7241 6 + 16299 CTCTCC
636 s canFam1.chrM 7262 6 + 16727 CTCTAC
637 s galGal2.chrM 8556 6 + 16775 CCCTCC
638 s danRer1.chrM 8358 6 + 16596 CTTTAC
639
640 a score=83513.0
641 s hg17.chrM 7821 93 + 16571 CATCCCTACGCATCCTTTACATAACAGACGAGGTCAACGATCCCTCCCTTACCATCAAATCAATTGGCCACCAATGGTACTGAACCTACGA--GT
642 s panTro1.chr3 35469583 95 - 209662276 CATCCCTACATATTCTGTAAATAACAGATGAAATTAACAACCCTGCTCTTACAGTCAAAGCAATTGGCCACCAATAATATTGAAACTATGAATGT
643 s mm5.chrM 7247 93 + 16299 CCTCTCTACGCATTCTATATATAATAGACGAAATCAACAACCCCGTATTAACCGTTAAAACCATAGGGCACCAATGATACTGAAGCTACGA--AT
644 s rn3.chr2 24391128 92 - 258222147 CTTTTCTGTAAATGCTATACATGATGTATGAAATTAATAATTCTTTAATAAAC-TAAAAACTTCAAGCTATCTATAGTACTAAAGTCATGA--AT
645 s canFam1.chrM 7268 93 + 16727 CTTCCCTCCGAATCCTTTATATAATGGACGAAATTAATAACCCCTCTTTAACCGTGAAAACAATAGGCCACCAATGATACTGAAGCTATGA--AT
646 s galGal2.chrM 8562 93 + 16775 CCTCCCTCCAAATCCTCTACATAATAGACGAAATCGACGAACCTGATCTCACCCTAAAAGCCATCGGACACCAATGATACTGAACCTATGA--AT
647 s danRer1.chrM 8364 93 + 16596 CATCACTTCGAATTTTATACCTTATAGATGAAATTAATGACCCCCACGTTACTATTAAAGCCGTAGGACATCAATGGTACTGAAGCTACGA--AT
648
649 a score=322789.0
650 s hg17.chrM 7914 535 + 16571 ACACCGACTACGGCGGACTAATCTTCAACTCCTACATACTTCCCCCATTATTCC-----------TAGAACCAGGCGACCTGCGACTCCTTGACGTTGACAATCGAGTAGTACTCCCGATTGAAGCCCCCATTCGTATAATAATTACATCACAAGACGTCTTGCACTCATGAGCTGTCCCCACATTAGGC---TTAAAAACAGATGCAATTCCCGGACGTCTAAACCAAACCACTTTCACCGCTACACGACCGGGGGTATACTACGGTCAATGCTCTGAAATCTGTGGAGCAAACCACAGTTTCATGCCCATCGTCCTAGAATTAATTCCCCTAAAAATCTTTGAAATAGGGCCCGTATTTACCCTATAGCACCCCCTCTACCCCCTCTAGAGCCCACTGTAAAGCTAAC------TTAGCATTAACCTTTTAAGTTAAAGATTAAGAGAACCAACACCTCTTTACAGTGAAATGCCCCAACTAAATACTACCGTATGGCCC------------------ACCATAATTACCCCCATACTCCTTACACTATTCCTCATCACCCAACTAAAAAT-
651 s panTro1.chr3 35469678 508 - 209662276 ACA--GACTATGAAGAATTAGGCTTCGATTCTTATATA-----------ATTCCAACAGCAGACTTAAAGCCAGGAGAACTTCAACTCCTCAAAGTTGATAACCAAACAATTCTCCCAATAGATATCCCCATCCGTACATTAATCTCATCTGAAGATGTCCTGCACTCATGAACTATCCCCTCATTGGGC---CTGAAAAGGGATGCAATCCCTGGATG-CTAAATCAAACCACCCTAACTGCTACATGACCAGGCCTTTACTATGGACAGTGCTCAGAAATTTGTGGGTCCAACCACAGTGTTATACCTATTGTCCTAGAATTAACCCCCTTAAAATGCTTCGAAACCTGATCCATGTCCACACTATAATA----------------------TCACTGTAAAGCTATC-------TAGCATTAAACTTTTAAGTTAAAGACTGAGCGGATCTACACCTCTCTGCAGTG-AATGCCTCAACTAGATACTTCCACATAATCCATTGTCATTCTGTCAATAACCATAA--------------CTT----TATTCTCCATTATTCAGTTAAAATT-
652 s mm5.chrM 7340 508 + 16299 ATACTGACTATGAAGACCTATGCTTTGATTCATATATAATCCCAACAAACGACC-----------TAAAACCTGGTGAACTACGACTGCTAGAAGTTGATAACCGAGTCGTTCTGCCAATAGAACTTCCAATCCGTATATTAATTTCATCTGAAGACGTCCTCCACTCATGAGCAGTCCCCTCCCTAGGA---CTTAAAACTGATGCCATCCCAGGCCGACTAAATCAAGCAACAGTAACATCAAACCGACCAGGGTTATTCTATGGCCAATGCTCTGAAATTTGTGGATCTAACCATAGCTTTATGCCCATTGTCCTAGAAATGGTTCCACTAAAATATTTCGAAAACTGATCTGCTTCAATAATTTAATT----------------------TCACTATGAAGCTAA--------GAGCGTTAACCTTTTAAGTTAAAGTTAGAG---ACCTTAAAATCTCCATAGTGATATGCCACAACTAGATACATCAACATGATTT------------------ATCACAATTATCTCATCAATAATTACCCTATTTATCTTATTTCAACTAAAAGT-
653 s rn3.chr2 24391220 461 - 258222147 ATATAGAATAT--TGACCTATCTATTTATTTCTATGTAATTCCTATAATTGAAC-----------TTAACTCAGAAAAGCTAGAGCTGCTAAAAATGAAGAATTACGTAATAAAACCTATATAGATC----TTCATATATTTATCTTAT----AAGTGTCT----CTCCAGAGCTTTCATCT--TTGGGCCTACTAAAAGCAAGTATAATTCCAGGACA-------GATGCAACTCTAATATCCACAAGACTAGATATGTGATGCCAACAATAATCAGAAATTTAAGGATGTAACTACAGCCTTATATAGGTTATACTTAAATTAATTCCAATTAAGTAGCTTGAGATTGAATTAGTATCAATAGTACAATG----------------------TTATTCTAAGTTTAA--------CACCATTGACC-TTTAAGT--AATAATGAG------TAAAATATTTCATAATT-------TCAATCTGATCTATTAGTA----CT------------------ATTGTAA-TATCT--------GTAGCACTATTTCTC-TTATTCAATTAACAAT-
654 s canFam1.chrM 7361 524 + 16727 ATACTGACTATGAAGACTTAAACTTTGACTCCTACATAATCCCAACACAAGAAT-----------TAAAGCCAGGAGAACTCCGACTATTAGAAGTAGACAACCGAGTTGTCCTCCCAATAGAAATAACCATCCGAATACTTATCTCTTCAGAAGACGTTTTGCATTCATGAGCCGTTCCATCACTAGGT---CTAAAAACTGACGCTATTCCAGGACGACTAAACCAAACCACCCTTATAGCCATACGACCAGGACTGTACTATGGCCAGTGCTCTGAAATCTGCGGATCTAACCACAGCTTTATACCCATTGTTCTTGAAATAGTCCCCCTATCTTACTTTGAGACCTGATCTGCCTTAATAGTATAACCTAGACTAGATCTAC--------TCATTAAGAAGCTATA-------AAGCATTAACCTTTTAAGTTAAAGACTGGG--AGTTTTAACCTCTCCTTAATGAAATGCCACAGCTAGATACATCCACCTGATTT------------------ATTATAATCTTTTCAATATTTCTCACCCTCTTCATCCTATTTCAACTAAAAAT-
655 s galGal2.chrM 8655 498 + 16775 ACACAGACTTCAAGGACCTCTCATTTGACTCCTACATAACCCCAACAACAGACC-----------TCCCCCTAGGCCACTTCCGCCTACTAGAAGTCGACCATCGCATTGTAATCCCCATAGAATCCCCCATTCGAGTAATCATCACCGCTGATGACGTCCTCCACTCATGAGCCGTACCCGCCCTCGGG---GTAAAAACAGACGCAATCCCTGGACGACTAAATCAAACCTCCTTCATCACCACTCGACCAGGAGTGTTTTACGGACAATGCTCAGAAATCTGCGGAGCTAACCACAGCTACATACCCATTGTAGTAGAGTCTACCCCCCTAAAACACTTTGAAGCCTGATCCTCACTA-----------------CTGTCATCTTAA----CCATTAAGAAGCTATG----CACCAGCACTAGCCTTTTAAGCTAGAGAGAGGGGACACC----CTCCCCCTTAATGACATGCCCCAATTAAACCCAAACCCATGATTC------------------TCCATCA---------TACTCCTAACTTGATTCACCTTCTCTCTGCTT------
656 s fr1.chrUn 326223582 517 + 349519338 ATACAGACTATAGCGA-CTAGCCTTTGACTCATATATAGTCCC-ACACAAGACC-----------TGGCCCCCGGCCAATTCCGCCTTTTAGAAACTGACCATCGAATGGTCGT-TCAGTGGACTCCCCCATTCGAATCCTAGTCTCAGCAGAAGATGTCCTCCACTCCTGAGCCGTCCCCTCTCTAGGT---GTAAAAATGGATGCCGTACCCGGCCGTCTAAACCAAACAGCCTTTATCCTGTCCCGACCTGGTGTTTTCTACGGCCAATGCTCCGAAATCTGCGGAGCTAACCACAGCTTCATACCAATCGTTGTTGAAGCCGTCCCCCTAGAACACTTTGAAAACTGATCCTCACTAATGCTCGAAGATGCCTC------------------ACTAAGAAGCTAAAACGGACACAGCGTTAGCCTTTTAAGCTAAAAATGGTG---CCTACCAAACACCCTTAGTGAAATGCCTCAACTCAACCCCGCACCTTGATTC------------------CTCATTATGGTCTTCTCTTGATGTGTATTCCTAATCTTCCTCCCTCCAAAAAT-
657 s danRer1.chrM 8457 520 + 16596 ATACAGACTACGAAAACCTAGAATTTGACTCTTATATAGTACCAACCCAAGACC-----------TCACACCAGGGGGCTTTCGGCTTCTTGAAACAGACCATCGAATAGTAGTTCCCAAAGAATCACCAATTCGAATTTTAGTTTCAGCTGAAGACGTACTGCACTCTTGAGCTGTTCCATCATTAGGC---ATTAAAATAGACGCGGTACCCGGACGATTAAACCAAACCGCTTTTATTGTTTCACGTCCAGGTGTATTCTACGGACAATGCTCTGAAATCTGCGGGGCTAACCACAGCTTTATGCCCATTGTAGTCGAAGCCGTCCCACTTGAATTCTTTGAAAACTGATCTTCAGCTATACTAGAAGACGCC------------------TCACTAAGATGCTAAAATTGGA-TAGCGTTGACCTTTTAAGTCAAAACTTGGT--GCTTACCGACCACCCTTAGTG-AATGCCTCAGCTTAATCCAAAACCCTGATTT------------------ATAATCCTTTTTTTCTCATGAGTCATTTTCCTTACTATTATTCCAACCAAAATC
658
659 a score=355.0
660 s hg17.chrM 8449 6 + 16571 ATTAAA
661 s canFam1.chrM 7885 6 + 16727 TTCAAA
662 s galGal2.chrM 9153 6 + 16775 ATCCAA
663 s fr1.chrUn 326224100 3 + 349519338 ---ATA
664 s danRer1.chrM 8977 6 + 16596 ATTAAT
665
666 a score=1195.0
667 s hg17.chrM 8449 5 + 16571 ATTAA
668 s panTro1.chr3 35470186 5 - 209662276 ATTAA
669 s mm5.chrM 7848 5 + 16299 CTCAT
670 s canFam1.chrM 7885 5 + 16727 TTCAA
671 s galGal2.chrM 9153 5 + 16775 ATCCA
672 s fr1.chrUn 326224100 4 + 349519338 -ATAG
673 s danRer1.chrM 8977 5 + 16596 ATTAA
674
675 a score=91.0
676 s hg17.chrM 8454 1 + 16571 A
677 s panTro1.chr3 35470191 1 - 209662276 A
678
679 a score=0.0
680 s hg17.chrM 8454 1 + 16571 A
681
682 a score=-28769.0
683 s hg17.chrM 8455 36 + 16571 CACAAAC--------TACCACCTAC-----CTCCCTCACCAAAGCC------------CAT
684 s mm5.chrM 7853 46 + 16299 CACAAAC-------ATTCCCACTGG-----CACCTTCACCAAAATC---ACTAACAACCAT
685 s rn3.chr2 24391681 39 - 258222147 CCCAAAGTATATTTATTCTAATT----------TTTCATCAAAGAA------------TAT
686 s canFam1.chrM 7891 36 + 16727 -----------TCACTACTACCCAGA-AAACCCGATAACCAAATCT---GC----------
687 s galGal2.chrM 9159 36 + 16775 CCCAAAC--------TTCTTTCATT-----CACTCTAACAAACAAC------------CCT
688 s fr1.chrUn 326224106 37 + 349519338 ------------CACTTATTCCCAAATGAACCCTCCTCTCAAAACA------------CTT
689 s danRer1.chrM 8983 45 + 16596 -----------CACATTCAACCTAA-----TGACCCAACTCAAGTTGATGCTAAAGAGCAC
690
691 a score=321517.0
692 s hg17.chrM 8491 590 + 16571 AAAAATAA---------AAAATTATAACAAA-----------CCCTGAGAACCAAAATGAACGAAAATCTGTTCGCTTCATTCATTGCCCCCACAATCCTAGGCCTACCCGCCGCAGTACTGATCATTCTATTTCCCCCT---CTATTGATCCCCACCT---CCAAATATCTC---ATCAACAACCGACTAATCACCACCCAACAATGACTAA-TCAA-----ACTAACCTCAAAACAAATGATA--GCCATACACAACACTAAAGGACGAACCTGATCTCTTATACTAGTATCCTTAATCATTTTTATTGCCACAACTAACCTCCTCGGACTCCTGCCTCACTCATTTACACCAACCACCCAACTATCTATAAACCTAGCCATGGCCATCCCCTTATGAGCGGGCGCAGTGATTATAGGCTTTCGCTCTAAGATTAAAAATGCCCTAGCCCACTTCTT--ACCACAAGGCACACCTACACCCCTTATCCCCATACTAGTTATTATCGAAACCATCAGCCTACTCATTCAACCAATAGCCCTGGCCGTACGCCTAACCGCTAACATTACTGCAGGCCACCTACTCATGCACCTA-ATT---GGAAGCGCCACCCTAGCAATATCA--------ACCATTAA
693 s panTro1.chr3 35470215 591 - 209662276 AAAAATAAT-------CAAAAT----GCAAAAACATAAAGCTCTCTGAGAATTAAAATGAAAGAAAATCTATTTACCCCTTTTACTACCCTGACAATTCTAGGCCTACCCGCAGTAGTATTAATCATTTTATTTCCCACCAAACTAT---TTCCAACCT---CCAGTCATCTA---ATTAGTAACCAACTGATTTCCATTCAACAGTGACTAATTCAACTTGTACT------AAAACAAATAATATTACC---CATAACATTAAAGGACAAACCTGATCCCTTATACTGATCTTCCTAATTCTCTTCATTGCCTCAACCAATCTCCTCGGGCCTCTACCCCATTAATTTACACCAACTACCCAATTATCAATAAATCTAGGTATAGCAATCCCCTTATGAGCAGGTGCAGTAATTATAGGCTTCTGCTTTAAGACGAAA-------------ACCTCTTTAGCCACAAGGCACACCTATACCACTTATCTCTATGCTAGTGATCATTGAAACTATTAGCCTATTCATTCAACCAATGGCATTAGCTGTGCGATTAACAGCCAACCTTACAGCCAGACACCTACTAATGCATTTATATCGGAGGAGGAGCCACACTAGTACTATCA--------ACTATCAG
694 s mm5.chrM 7899 581 + 16299 AAAAGTAA---------AAACC--------------------CCTTGAGAATTAAAATGAACGAAAATCTATTTGCCTCATTCATTACCCCAACAATAATAGGATTCCCAATCGTTGTAGCCATCATTATATTTCCTTCAATCCTAT---TCCCATCCT---CAAAACGCCTA---ATCAACAACCGTCTCCATTCTTTCCAACACTGACTAG-TTAA-----ACTTATTATCAAACAAATAATGCTAATCCACACACCA--AAAGGACGAACATGAACCCTAATAATTGTTTCCCTAATCATATTTATTGGATCAACAAATCTCCTAGGCCTTTTACCACATACATTTACACCTACTACCCAACTATCCATAAATCTAAGTATAGCCATTCCACTATGAGCTGGAGCCGTAATTACAGGCTTCCGACACAAACTAAAAAGCTCACTTGCCCACTTCCT--TCCACAAGGAACTCCAATTTCACTAATTCCAATACTTATTATTATTGAAACAATTAGCCTATTTATTCAACCAATGGCATTAGCAGTCCGGCTTACAGCTAACATTACTGCAGGACACTTATTAATACACCTA-ATC---GGAGGAGCTACTCTAGTATTAATA--------AATATTAG
695 s rn3.chr2 24391720 540 - 258222147 CAGAGCAT--------CAGAAC----ACAAGTCT--------CAATGAGAAAAAAGATGGCTGAAATTTTCTTTAGCTATAGCACAATCTCAGTGATAAAAGTACTAACTACAGTTGTTTTAATCACCTCATTTTCTAC----CTCT---TTTC--------------ACCTA---AACAAAAATTAATTAACCTTTATTCAA---TGATTAT-GCCATTAATGCT------AAAACAAATAGCA------------ACAATAAAGGCCAGACTTCATTTCTAATATTAACTTCCTTCCTC----TTATTAGGTAAGCAAACTCACTATGATTATTACCATATTCACTTATGTCAACTTTCCAATTATCAATAAA-CTAGGTGTGGCTCCTCCAGT-TGAGCGGAAATAGTCATTATTAGCTTCTGAC-TGAAATGAGAGCCCCATCAGACCATTTTCT--GCTACAAGAAACACTCATTCCATTTCTCCCCATGTCACTAACTATT---------------CCTGTTTAATCCACATCCCTGTCTGTATGATTATCAGGCAATACTGTGGCAGGCCACAAACTGTTCATCCTTCATT---GGCAGAGTCACATTAGTTTTAGCA--------TCCATTAA
696 s canFam1.chrM 7928 589 + 16727 AAAATTGCTG-GTCAACATAAT--------------------CCTTGAGAAAACAAATGAACGAAAATCTATTCGCTTCTTTCGCTGCCCCCTCAATAATAGGTCTCCCTATTGTGGTACTGATCGTCATATTCCCTTCCATTTTAT---TCCCAACAC---CCAGTCGCCTA---ATCAATAATCGGTTAATCTCCATTCAGCAATGACTAA-TTCA-----ACTAACATCAAAACAAATACTA--GCAATTCATAACCAAAAGGGACGAACCTGAGCTCTCATACTTATATCACTAATTCTATTTATTGGCTCAACTAATCTACTTGGACTATTACCTCACTCATTTACGCCCACAACACAACTCTCTATAAACCTCGGAATAGCAATTCCCCTATGAGCAGGGACAGTAATTACCGGTTTCCGCTATAAAACCAAAGCATCCTTAGCACACTTTCT--ACCCCAAGGCACCCCTCTCCCCCTAATTCCAATACTAGTAGTCATCGAAACTATTAGTCTATTTATTCAACCCATGGCTCTAGCCGTTCGATTAACCGCCAATATTACTGCAGGACACCTCCTAATCCATTTG-ATT---GGAGGGGCTACCTTAGCTCTTATC--------AATATTAG
697 s galGal2.chrM 9195 609 + 16775 -----------GCAAACAAAATTACAACAACTAAACCCACC-CCCTGAACCTGACCATGAACCTAAGCTTCTTCGACCAATTCTCAAGCCCCTGCCTACTAGGAATCCCTCTAATCCTCCCATCACTCCTTCTTCCAGCCCTCCTAC---TTCCATCAC---CAGGAAACCGATGGATCAACAACCGCCTCTCCACCATCCAACTCTGATTCA-CCCA-----CCTAATCACAAAACAACTAATA--ACCCCCCTAAACAAGGCAGGTCACAAATGAGCCCTCCTACTCACCTCACTTATCCTAATACTCCTCTCCATTAACCTCCTAGGCCTCCTCCCCTACACCTTCACCCCAACTACCCAACTATCAATAAACATGGCCTTAGCCCTGCCACTATGACTAGCCACCTTACTAACAGGCCTGCGAAACCAACCCTCCGCCTCCTTAGGACACCTACT--CCCTGAAGGCACCCCCACCCCACTGATTCCAGCCCTAATCATAATCGAAACAACCAGCCTACTTATTCGGCCATTAGCCCTAGGAGTACGCCTAACAGCAAACCTCACAGCTGGTCACCTACTTATCCAACTT-ATC---TCTACAGCCACAATCGCCCTACTACCAATAATGCCATCAA
698 s fr1.chrUn 326224143 588 + 349519338 ---------GCCCCAAAGAAAT-----CAAA-----------CCCTGACCCTGATCATGACACTAAGCTTCTTCGACCAATTTCTTAGCCCCACCGCCTTTGGTATTCCCCTGATTGCCCTCGCTCTCCTATTACCTTGGACCCTCT---TCCCCACACCAACCAACCGTTGA---ACCAACAATCGTCTTTTAACACTTCAAAGCCAATTTA-TTAA-----TCGATTTACTCAACAACTGCTC--CTCCCACTAAACATAGGAGGGCACAAATGAGCCCTTATATTCGCCTCATTAATAGTGTTCCTAATTACCATTAATATGCTAGGACTCCTTCCATACACATTCACCCCCACCACACAGCTTTCCGTAAATATAGCCCTAGCTGTACCCCTATGACTCGCAACAGTAATCATCGGAATACGAAACAACCCAACAGCAGCCCTAGGCCACCTTCT--TCCAGAAGGCACCCCCAACGCTCTAATCCCTATCCTAATTATTATCGAAACTGTCAGCCTCTTCATTCGACCTTTAGCACTAGGAGTTCGACTAACCGCTAACCTCACAGCAGGCCACCTGTTGATTCAACTA-ATC---GCTACAGCAGCTTTCGTACTCCTC--------CCCCTTAT
699 s danRer1.chrM 9028 580 + 16596 ----------------AAAAATGACACTTGA-----------AACTGA------CCATGATAACAAGCTTCTTCGATCAATTCGCGAGCCCCTACCTTTTAGGTATCCCCCTTATCCTCGTTGCCATACTTCTACCTTGACTTCTTT---TTCCTGCTCCAACATCACGATGA---ATCAACAATCGACTTATCACCGTCCAAACATGATTGA-CTGG-----ACGATTCACAAACCAACTTATG--ACCCCACTAAACTTTAGCGGCCACAAATGAGCACTTTTATTTGCCTCTCTAATAGTATTCTTAATCACAATTAATCTTTTAGGACTTCTTCCTTATACTTTTACACCAACAACCCAACTCTCTCTGAATATAGGATTTGCAGTACCCCTATGACTTGCCACAGTAATTATCGGAATAAAAAATCAACCGACTATTGCCCTAGGACATCTTTT--ACCAGAAGGAACCCCCATCCCATTAATTCCGGCCCTTATTATTATCGAAACAATTAGCTTATTTATTCGACCATTAGCTTTAGGGGTACGACTTACTGCAAACCTCACAGCAGGCCACCTACTAATTCAACTT-ATT---GCCACAGCAGTATTTGTTCTACTA--------CCAATAAT
700
701 a score=-3507.0
702 s hg17.chrM 9081 17 + 16571 -CCTTCCCTCTACACTTA
703 s canFam1.chrM 8517 17 + 16727 -CGCGACCACAGCTTTTA
704 s galGal2.chrM 9808 17 + 16775 -CGCCCTAACGGCACTCA
705 s fr1.chrUn 326224732 16 + 349519338 -CCAACTGTCGCCATTC-
706 s danRer1.chrM 9608 17 + 16596 ACCAGCAGTAGCAATTT-
707
708 a score=-5282.0
709 s hg17.chrM 9081 7 + 16571 -CCTTCCC
710 s panTro1.chr3 35470806 7 - 209662276 -TCTTCCC
711 s mm5.chrM 8480 7 + 16299 -CCCACCA
712 s canFam1.chrM 8518 6 + 16727 -GCGACC-
713 s galGal2.chrM 9806 5 + 16775 -TCCGC--
714 s fr1.chrUn 326224732 6 + 349519338 -CCAACT-
715 s danRer1.chrM 9608 7 + 16596 ACCAGCA-
716
717 a score=-1082.0
718 s hg17.chrM 9088 10 + 16571 TCTACACTTA
719 s mm5.chrM 8487 10 + 16299 ACAGCTACCA
720 s canFam1.chrM 8524 10 + 16727 ACAGCTTTTA
721 s galGal2.chrM 9815 10 + 16775 ACGGCACTCA
722 s fr1.chrUn 326224739 9 + 349519338 TCGCCATTC-
723 s danRer1.chrM 9615 10 + 16596 GTAGCAATTT
724
725 a score=894.0
726 s hg17.chrM 9098 2 + 16571 TC
727 s mm5.chrM 8497 2 + 16299 TT
728 s rn3.chr2 24392260 2 - 258222147 TT
729 s canFam1.chrM 8534 2 + 16727 TC
730 s galGal2.chrM 9825 2 + 16775 TC
731 s fr1.chrUn 326224748 2 + 349519338 TG
732 s danRer1.chrM 9625 2 + 16596 TA
733
734 a score=-1734.0
735 s hg17.chrM 9100 12 + 16571 ---ATCTTCACAATT
736 s fr1.chrUn 326224752 10 + 349519338 ---ATCAACCCTA--
737 s danRer1.chrM 9627 12 + 16596 ACTGCCTCCGTC---
738
739 a score=-3437.0
740 s hg17.chrM 9100 9 + 16571 ---ATCTTCACA
741 s mm5.chrM 8499 9 + 16299 ---ACATTTATT
742 s rn3.chr2 24392262 8 - 258222147 ---ATTTGCAG-
743 s canFam1.chrM 8536 9 + 16727 ---ACTTTTATT
744 s fr1.chrUn 326224750 9 + 349519338 ---ACATCAACC
745 s danRer1.chrM 9627 9 + 16596 ACTGCCTCC---
746
747 a score=1618.0
748 s hg17.chrM 9109 3 + 16571 ATT
749 s panTro1.chr3 35470834 3 - 209662276 ATT
750 s mm5.chrM 8508 3 + 16299 ATT
751 s rn3.chr2 24392270 3 - 258222147 GCC
752 s canFam1.chrM 8545 3 + 16727 ATT
753 s fr1.chrUn 326224759 2 + 349519338 -CT
754 s danRer1.chrM 9636 3 + 16596 GTC
755
756 a score=111212.0
757 s hg17.chrM 9112 101 + 16571 CTAATTCTACTGACTATCCTAGAAATCGCTGTCGCCTTAATCCAAGCCTACGTTTTCACACTTCTAGTAAGCCTCTACCTGCACGACAACACATAATGACC
758 s panTro1.chr3 35470837 101 - 209662276 CTAATCTTACTGAGCATCCTTGAATTCACCGTAGCCCTTATTCAGGCCTATGTCTTTGCACTACTTGTAAGCCTTTACCTATATGAAAACACATAATGTCC
759 s mm5.chrM 8511 101 + 16299 TTACTTCTACTCACAATTCTAGAATTTGCAGTAGCATTAATTCAAGCCTACGTATTCACCCTCCTAGTAAGCCTATATCTACATGATAATACATAATGACC
760 s rn3.chr2 24392273 88 - 258222147 TTCATCAAATGGATTATCTCAATATTACCTTTCTTTTCAATT--------TGCTTTCATGCT-----TAGCCTTTTACCTACAGGATAGTACTTCAAGGCC
761 s canFam1.chrM 8548 101 + 16727 CTAATCCTACTTACGATCCTAGAATTTGCTGTTGCCTTAATTCAAGCCTATGTTTTTACCTTACTAGTGAGTCTATACTTACATGACAACACCTAATGACC
762 s galGal2.chrM 9827 101 + 16775 CTATTCCTACTAACCATCCTAGAAGTGGCAGTAGCAATAATCCAAGCCTACGTCTTCGTCCTCCTCCTAAGCCTCTACTTACAAGAAAATATTTAATGGCA
763 s fr1.chrUn 326224762 101 + 349519338 TTATTCCTCCTGACACTTCTAGAAGTCGCCGTCGCAATAATCCAAGCCTATGTTTTCGTACTTCTTCTAAGCCTCTACCTACAAGAAAACGTTTAATGCCC
764 s danRer1.chrM 9639 101 + 16596 CTTTTCTTACTTACCCTGCTAGAAGTTGCAGTAGCAATAATCCAAGCCTACGTCTTTATTCTTCTTTTAAGCCTATATCTGCAAGAAAACATTTAATGGCC
765
766 a score=140967.0
767 s hg17.chrM 9213 202 + 16571 CACCAATCACATGCCTATCATA---TAGTAAAACCCAGCCCATGACCCCTAACAGGGGCCCTCTCAGCCCTC----CTAATGACCTCCGG-CCTAGCCATGTGATTTCACTTCCACTCCATAACGCTCCTCATA-----------CTAGGCC------------------TACTAACCAACACACTAAC--CATATACCAATGGTGGCGCGATGTAACACGAGAAAGCACATACCAAGGCC
768 s panTro1.chr3 35470938 204 - 209662276 CACCAAACACATGCCTACCATA---TAGTCAAACCCAGCCCCTGACCACTAACAGGAGCTCTCTCAGCTCTC----CTAATAACATCTGG-CCTGGCCATGTGATTTCACTTTAACTCTATCAC---CCTTTTA--------ACCCTAGGCT------------------TACTAACCAACACACTAACTATATATACCAGTGATGACGTGACATTATCCAAGAAAGTACATTTCAAGGCC
769 s mm5.chrM 8612 202 + 16299 CACCAAACTCATGCATATCACA---TAGTTAATCCAAGTCCATGACCATTAACTGGAGCCTTTTCAGCCCTC----CTTCTAACATCAGG-TCTAGTAATATGATTTCACTATAATTCAATTAC---ACTATTA--------ACCCTTGGCC------------------TACTCACCAATATCCTCAC--AATATATCAATGATGACGAGACGTAATTCGTGAAGGAACCTACCAAGGCC
770 s rn3.chr2 24392361 234 - 258222147 TCCCTGAATGACACCTATTATATTGTAGTCAATTCTTGTCCCCAAACACTTACAGAACCATTCCCAGCCAGCAAGGTTCACGACATCCAGTTTTGATAATATGATTCCACTTTTACTCCATTGT-----TTTTAGTAAAACAATACTAAACTAATAATGTTTAGTATTGATGCCTAGCAGAATCTTAAC--AATATATCAGTTAGGTTGGGATGCAACCCAGGAAGCTATATTTCAAGACC
771 s canFam1.chrM 8649 202 + 16727 CACCAAACTCACGCTTACCACA---TAGTCAACCCAAGCCCATGACCGCTGACAGGGGCCCTTTCTGCCCTC----CTTATAACATCGGG-TCTTATCATATGATTTCACTATAACTCAATAGC---CCTACTT--------ACATTAGGAT------------------TCACAACCAACCTGTTAAC--CATATGCCAGTGATGACGAGATGTGATCCGAGAAGGCACATTCCAAGGAC
772 s galGal2.chrM 9928 202 + 16775 CACCAAGCACACTCCTACCACA---TAGTTGACCCAAGCCCATGACCAATCTTCGGCGCAGCCGCAGCACTA----CTAACCACCTCTGG-CCTAATCATATGGTTCCACTACAGCTCGACCAC---CCTACTG--------ACAATAGGCC------------------TCCTCTCTATACTTCTAGT--CATGCTGCAATGATGACGAGACGTAGTCCGAGAAAGCACCTTCCAGGGCC
773 s danRer1.chrM 9740 202 + 16596 CACCAAGCACATGCATATCACA---TAGTTGACCCAAGCCCATGACCACTAACTGGAGCTGTAGCCGCCCTA----TTAATATCATCTGG-CTTAGCAATTTGGTTTCACCTTCACTCAATGAC---ATTAATT--------GTTCTAGGAA------------------TAATTCTTCTTATTTTAAC--TATAATCCAATGATGACGAGACATTATTCGAGAAGGGACCTTTCAAGGCC
774
775 a score=6726.0
776 s hg17.chrM 9415 8 + 16571 ACCACACA
777 s panTro1.chr3 35471142 8 - 209662276 CCCACACA
778 s mm5.chrM 8814 8 + 16299 ACCACACT
779 s canFam1.chrM 8851 8 + 16727 ATCATACC
780 s galGal2.chrM 10130 8 + 16775 ACCACACC
781 s danRer1.chrM 9942 8 + 16596 ACCATACC
782
783 a score=20191.0
784 s hg17.chrM 9423 19 + 16571 CCACCTGTCCAAAAAGGCC
785 s panTro1.chr3 35471150 19 - 209662276 TCAATTGTCCAAAAAGGCC
786 s mm5.chrM 8822 19 + 16299 CCTATTGTACAAAAAGGAC
787 s rn3.chr4 151131657 18 + 187371129 -CCATTTTACAGAAAGGCC
788 s canFam1.chrM 8859 19 + 16727 CCTATTGTACAAAAAGGAC
789 s galGal2.chrM 10138 19 + 16775 CCAACTGTCCAAAAGGGCC
790 s danRer1.chrM 9950 19 + 16596 CCGCCCGTACAAAAAGGGT
791
792 a score=138985.0
793 s hg17.chrM 9442 130 + 16571 TTCGATACGGGATAATCCTATTTATTACCTCAGAAGTTTTTTTCTTCGCAGGATTTTTCTGAGCCTTTTA--CCACTCCAGCCTAGCCCCTACCCCCCAACTAGGAGGGCACTGGCCCCCAACAGGCATCAC
794 s panTro1.chrUn_random 213823712 130 - 240967748 TTCGGTATGGAATAATTTTATTCATCATCTCAGAAGTCTTTTTCTTTGCTGGATTCTTCTGAGCATTCTA--CCACTCCAGCCTAGCCCCTACCCCTCAACTAGGAAGACACTGACCCCCAACAGGCATCAC
795 s mm5.chrM 8841 130 + 16299 TACGATATGGTATAATTCTATTCATCGTCTCGGAAGTATTTTTCTTTGCAGGATTCTTCTGAGCGTTCTA--TCATTCTAGCCTCGTACCAACACATGATCTAGGAGGCTGCTGACCTCCAACAGGAATTTC
796 s rn3.chr4 151131675 125 + 187371129 TTCGTTATGAAATAGCT------ATTGTATCTGAAGTCTTTTTCTTGACAGGACTTTTCTGAGCTTTCTGCTCCACTCCAGCCTTGTCCC-GCACATGACCTAGAGGGCTGCTGGCCACCTACAGGAATTAC
797 s canFam1.chrM 8878 130 + 16727 TACGATACGGAATAGTTCTTTTTATCGTATCAGAAGTATTTTTCTTTGCAGGCTTCTTCTGAGCCTTTTA--CCACTCCAGCCTAGCCCCTACTCCTGAACTTGGGGGTTGCTGACCTCCTACCGGCATTAT
798 s galGal2.chrM 10157 130 + 16775 TACGATACGGAATAATCCTTTTCATTACATCAGAGGCCTTCTTCTTCCTAGGATTCTTCTGAGCCTTCTT--CCACTCAAGCCTAGCCCCAACACCAGAACTGGGGGGCCAATGGCCCCCAACAGGAGTCAA
799 s danRer1.chrM 9969 130 + 16596 TGCGGTACGGTATAATCCTATTTATTACCTCAGAGGTATTTTTTTTCCTAGGATTTTTCTGAGCTTTTTA--TCATTCAAGTTTAGCCCCCACCCCTGAACTAGGGGGATGTTGACCACCCACAGGGCTAAC
800
801 a score=45530.0
802 s hg17.chrM 9572 68 + 16571 CCCGCTAAATCCCCTAGAAGTCCCACTCCTAAACACATCCGTATTACTCGCATCAGGAGTATCAATCA
803 s panTro1.chrUn_random 213823842 68 - 240967748 TCCACTCAATCCCCTAGAAGTCCCACTCTTAAACACGTCTGTACTACTCGCATCGGGAGTTTCAATTA
804 s mm5.chrM 8971 68 + 16299 ACCACTTAACCCTCTAGAAGTCCCACTACTTAATACTTCAGTACTTCTAGCATCAGGTGTTTCAATTA
805 s canFam1.chrM 9008 68 + 16727 TCCTCTTAACCCATTAGAAGTGCCTCTACTCAACACCTCAGTCCTCCTAGCCTCCGGAGTATCTATTA
806 s galGal2.chrM 10287 68 + 16775 ACCCCTAAACCCCCTTGAAGTACCCCTACTAAATACAGCAATCCTCCTAGCCTCAGGAGTCACCGTTA
807 s danRer1.chrM 10099 68 + 16596 AACTCTTGACCCATTTGAAGTGCCGCTCCTCAATACAGCTGTTTTGCTAGCATCCGGAGTAACAGTAA
808
809 a score=151784.0
810 s hg17.chrM 9640 173 + 16571 CCTGAGCTCACCATAGTCTAATAGAAAACAACCGAAACCAAATAATTCAAGCACTGCTTATTACAATTTTACTGGGTCTCTATTTTACCCTCCTACAAGCCTCAGAGTACTTCGAGTCTCCCTTCACCATTTCCGACGGCATCTACGGCTCAACATTTTTTGTAGCCACAGGC
811 s panTro1.chrUn_random 213823910 173 - 240967748 CTTGAGCTCACCATAGCCTAATAGAGAACAATTGTAATCAAGCAATTCAAGCACTACTTATCACAATCTTACTAGGCATCTACTTCACCCTCCTACAAGTTTCAGAATACTTTGATGCCCCCTTTACTATCGCCAATGGTATCTATGGTTCAACATGTTTTGTAGCTACGGGC
812 s mm5.chrM 9039 173 + 16299 CATGAGCTCATCATAGCCTTATAGAAGGTAAACGAAACCACATAAATCAAGCCCTACTAATTACCATTATACTAGGACTTTACTTCACCATCCTCCAAGCTTCAGAATACTTTGAAACATCATTCTCCATTTCAGATGGTATCTATGGTTCTACATTCTTCATGGCTACTGGA
813 s rn3.chr10 102082388 167 - 110733352 CCTGAGTCCATCATTGTCTAACAGAAGGAAAACAAAAAGATAGAAACCAAGCCTTATTTATTACAATTTTCCTGG------ACTCTACTGCCCACCAAGCTTCAGAATATTTTGAAACACCAGTCTCCATCTGAGACAGAATTTATGGATCAACATTCTTCATAACAACAGAG
814 s canFam1.chrM 9076 173 + 16727 CTTGAGCCCATCATAGTTTAATAGAAGGTAATCGCAAACATATACTTCAAGCCTTATTCATTACAATCTCCTTAGGCGTATATTTTACGCTATTACAGGCCTCCGAATACTATGAGACATCTTTTACAATCTCCGATGGGGTATACGGATCTACCTTTTTTATAGCCACTGGA
815 s galGal2.chrM 10355 173 + 16775 CATGGGCTCACCACAGCATCACAGAAGGAAACCGAAAACAAGCCATCCACGCACTAACTCTCACAATCCTCCTAGGATTCTATTTCACAGCCCTACAAGCAATAGAGTACCATGAAGCCTCCTTCTCAATCGCTGACAGCGTCTACGGCTCCACCTTCTTCGTCGCTACAGGG
816 s danRer1.chrM 10167 173 + 16596 CATGAGCACATCACAGCCTCATGGAAGGAGAACGAAAACAAGCCATTCAATCTCTTGCTCTTACAATTCTACTAGGATTGTACTTCACAGCACTTCAGGCTATAGAATACTATGAAGCCCCATTTACAATTGCAGACGGAGTATATGGCTCAACATTCTTTGTAGCTACAGGG
817
818 a score=106761.0
819 s hg17.chrM 9813 128 + 16571 TTCCACGGACTTCACGTCATTATTGGCTCAACTTTCCTCACTATCTGCTTCATCCGCCAACTAATATTTCACTTTACATCCAAACATCACTTTGGCTTCGAAGCCGCCGCCTGATACTGGCATTTTGT
820 s panTro1.chrUn_random 213824083 128 - 240967748 TTCCACGGGCTCCCCGTCATCATTGGTTCAACATTCCTTACTGTTTGCCTTATCCGCCAACTATTATATCCTTTTACATCCAAGTACCACTTCGGCTTTGAACCCCCCACTTGATACTGACACTTTGT
821 s mm5.chrM 9212 128 + 16299 TTCCATGGACTCCATGTAATTATTGGATCAACATTCCTTATTGTTTGCCTACTACGACAACTAAAATTTCACTTCACATCAAAACATCACTTCGGATTTGAAGCCGCAGCATGATACTGACATTTTGT
822 s canFam1.chrM 9249 128 + 16727 TTTCACGGATTACACGTAATTATTGGCTCTACATTCCTCATCGTGTGCTTCCTCCGACAGCTATACTACCACTTCACATCAAACCACCACTTCGGATTTGAAGCCGCTGCATGATATTGACACTTTGT
823 s galGal2.chrM 10528 128 + 16775 TTCCACGGACTACATGTAATCATTGGATCATCCTTTTTAACAGTTTGCCTCCTACGACTAATCAAATTCCACTTCACACCAAACCACCACTTCGGATTTGAAGCAGCAGCCTGATACTGACACTTCGT
824 s danRer1.chrM 10340 128 + 16596 TTTCATGGTCTACACGTTATTATTGGATCAACCTTTTTAGCTGTATGCCTTCTACGCCAAGTTTTATTTCACTTCACATCAGACCACCACTTTGGTTTTGAAGCTGCCGCTTGATATTGACACTTCGT
825
826 a score=8380.0
827 s hg17.chrM 9941 16 + 16571 AGATGTGGTTTGACTA
828 s mm5.chrM 9340 16 + 16299 AGACGTAGTCTGACTT
829 s canFam1.chrM 9377 16 + 16727 TGATGTAGTCTGGCTA
830 s galGal2.chrM 10656 16 + 16775 AGACATCATCTGACTC
831 s danRer1.chrM 10468 16 + 16596 CGACGTAGTCTGACTA
832
833 a score=27771.0
834 s hg17.chrM 9957 42 + 16571 TTTCTGTATGTCTCCATCTATTGATGAGGGTCTTACTCTTTT-
835 s mm5.chrM 9356 42 + 16299 TTCCTATACGTCTCCATTTATTGATGAGGATCTTACTCCCTT-
836 s rn3.chr4 170558950 38 - 187371129 TTTCTATACAT----ACCTATTGATGAGGAGCACACATTCTT-
837 s canFam1.chrM 9393 42 + 16727 TTCTTGTATGTATCTATTTATTGATGAGGATCCTATTTCTTT-
838 s galGal2.chrM 10672 42 + 16775 TTCCTCTACATATCCATATACTGATGAGGATCTTGCTCTTCT-
839 s danRer1.chrM 10484 43 + 16596 TTCCTCTACGTATCAATCTATTGATGAGGCTCATAGCCTTTCT
840
841 a score=148393.0
842 s hg17.chrM 9999 266 + 16571 AGTATAAATAGTACCGTTAACTTCCAATTAACTAGTTTTGAC--AACATTCAAAAAAGAGTAATAAACTTCGCCTTA---ATTTTAATAATCAACACCCTCCTAGCC---TTACT---------ACTAATAATTATTA--CATTTTGACTACCACAACTCAACGGCTACATAGAAAAATCCACCCCTTACGAGTGCGGCTTCGACCCTATATCCCCCGCCCGCGTCCCTTTCTCCATAAAATTCTTCTTAGTAGCTATTACCTTCTTATTATTTGATCTAGAAAT
843 s panTro1.chr3 35471726 266 - 209662276 AGTATAAGCAGTACCATTGACTTCTAATCAATTAGTTTCGAT--ATTATCCAAAAGTGAGTAATCAACTTGACATTA---GCTCTAGTAACCAACACCTTACTGGCCCTATTACT---------ACTAATAA-----AAGCATTTTGGCTCCCACAACTTAATATTTATATAGAAAAATCCAACTCCTATGAATGTGGATTTCACCCAATAACCTCTGCCCACCTCCCCTTTTCCATAATATTCTTCCTAGGAGCCGTCACATTCCTCCTCTTTGACTTAGAGAT
844 s mm5.chrM 9398 266 + 16299 AGTATAATTAATATAACTGACTTCCAATTAGTAGATTCTGAA--TAAACCCAGAAGAGAGTAATTAACCTGTACACT---GTTATCTTCATTAATATTTTATTATCC---CTAAC---------GCTAATTCTAGTTG--CATTCTGACTCCCCCAAATAAATCTGTACTCAGAAAAAGCAAATCCATATGAATGCGGATTCGACCCTACAAGCTCTGCACGTCTACCATTCTCAATAAAATTTTTCTTGGTAGCAATTACATTTCTATTATTTGACCTAGAAAT
845 s rn3.chr4 170558988 240 - 187371129 AGTATAATCAG-----------TCCAGCCAGTTAGATGTAGCG-TAAATCTAGATAGTAATCATAACTTTATACATA-------TAACAACTAACATCAACCTATCC---CTACG---------TTGAATGTCCATTG--CATGTTGATTACCTCAACTTAATATTTATACAGAAAAAGCAAACCCCTATGAATGTGGGTTTGACCTAATAGGCTCATCGAACCTTTCATTTTCCATAAAGTTTTTCCTTGT----------TTTCCACCATTCAG--TACAGCT
846 s canFam1.chrM 9435 266 + 16727 AGTATAACTAGTACAATTGACTTCCAATCAGTTAGCTCCAGA--TCAACCTGGAAAGAAGTAATAAACGTTATATTA---ACTTTGATAACTAATGTAACCCTAGCA---TCCTT---------ACTTGTACTAATCG--CATTCTGACTTCCCCAGCTAAATATCTATACAGACAAGACAAGCCCCTACGAATGTGGTTTTGACCCCATGGGATCTGCTCGCCTACCTTTCTCTATAAAATTTTTCCTAGTTGCCATCACATTTCTGCTTTTCGACCTAGAAAT
847 s galGal2.chrM 10714 270 + 16775 AGTATACTCATTACAACTGACTTCCAATCTTTAAAATCTGGTA-TCAACCCAGAGAAGAGCAATGAAC------------ACACTTACATTTATACTCTCACTATCCTTTCTACTAAGCGCTGCACTAACTACTATAA--ACTTTTGACTAGCCCAAATAGCCCCAGACACAGAAAAACTGTCACCGTACGAATGCGGATTTGACCCACTAGGATCAGCCCGACTCCCATTCTCAATCCGATTCTTCCTAGTAGCCATCCTATTCCTTTTATTCGACCTAGAAAT
848 s danRer1.chrM 10527 271 + 16596 AGTATAACCAGTATAAATGACTTCCAATCATTTGGTCTTGGTGAAAAATCCAGGGAAAGGTAATGAATTTATTTGCAACTATTCTTATTATTATAACGACCTTATCA---TTGGT---------CTTAGCTCTAGTAT--CATTTTGACTACCACAAATGAACTCTGATACAGAAAAGCTATCACCATATGAATGCGGATTTGATCCACTAGGGTCCGCCCGCCTACCATTTTCATTACGATTTTTCTTAGTAGCAGTTTTATTCCCTTTATTTGACTTGGAAAT
849
850 a score=73927.0
851 s hg17.chrM 10265 153 + 16571 TGCCCTCCTTTTACCCCTACCATGAGCCCTACAAACAACTAA---CCTGCCACTAATAGTTATGTCATC--------CCTCTTATTAATCATCATCCTAGCCCTAAGTCTGGCCTATGAGTGA----CTACAAAAAGGATTAGACTGAGCCGAAT---TGGTATATAGTTT
852 s panTro1.chr3 35471992 153 - 209662276 TGCTGTACTACTACCTCTGCCATGAGCCCTTCAAACAACCAA---CCTGACACTAATA--------ATCAGCACAGCCCTTGTATTAGTTACCATTTCAATCCTAGGCTTGACTTATGAATGAGCCCC----AAAAGTGTTAGACTGAGTTGAAT---TGGTAAATAGTTT
853 s mm5.chrM 9664 156 + 16299 TGCTCTTCTACTTCCACTACCATGAGCAATTCAAACAATTAAAACCTCTACTATAATA--------ATT---ATAGCCTTTATTCTAGTCACAATTCTATCTCTAGGCCTAGCATATGAATGA----ACACAAAAAGGATTAGAATGAACAGAGTAAATGGTAATTAGTTT
854 s rn3.chr16 53341827 156 + 90224819 TGCCTTATTACTTCCTCTGCCTTGAGTAATTCAAACAACTAGCATTATTACAATAATA--------TTT---TCAACTTTTATTCTAGTCATTATTTTATCCCTTGGGTTAATCTATCAATGA----TTACAAAAAGGACTAGAATGGACAGAATAATTGGTAATTAGTTT
855 s canFam1.chrM 9701 154 + 16727 TGCACTCCTACTCCCACTTCCCTGAGCGTCACAAACCAACAA---GCTAACAACAATA--------CTTATCATAGCACTCCTACTAATCTCCCTCCTAGCTGCGAGCCTAGCGTATGAATGG----ACCGAAAAGGGGCTAGAATGAACCGAATA--TGATAATTAGTTT
856 s galGal2.chrM 10984 156 + 16775 CGCCCTGCTTCTTCCCCTTCCATGAGCCATCCAACTTGCACA---CCCTATAATAACC--------CTTACTTGAGCCACCACTATCATCGCCCTCCTCACATTTGGTCTCATCTACGAATGA----ACTCAGGGCGGCTTAGAATGAGCAGAATAACAGAAAGTTAGTCT
857 s danRer1.chrM 10798 153 + 16596 TGCTCTCCTATTACCACTCCCATGAGGAGATCAACTTAATAA---CCCAATAGAAACT--------CTCTTTTGAGCTATAACAGTACTGATTTTGCTAACACTAGGACTAGCCTACGAATGA----GCCCAAGGCGGCCTTGAATGAGCAGAGT---AGGGAGCTAGTCC
858
859 a score=144767.0
860 s hg17.chrM 10418 376 + 16571 -AAA--CAAAACGAATGATTTCGACTCATTAAATTATGATA----ATCATATTTACCAA-ATGCCCCTCATTTACATAAATATTATACTAGCATTTACCATCTCACTTCTAGGAATACTAGTATATCGCTCACACCTCATATCCTCCCTACTATGCCTAGAAGGAAT-----AATACTATCGCTGTTCATTATAGCTACTCTCATAACCCTCAA---------CACCCACTCCCTCTTAGC----------CAATATTGTGCCTATTGCCATACTAGTCTTTGCCGCCTGCGAAGCAGCGGTGGGCCTAGCCCTACTAGTCTCAATCTCCAACACATATGGCCTAGACTACGTACATAACCTAAACCTACTCCAATGCTA------------------------------AAACTAATCGTCCCAACAATTATATTAC
861 s panTro1.chr3 35472145 374 - 209662276 -AAG-TCAAAATAAATGATTTTGACTCATTAGATTATGATA---GACCATATTTACCAA-ATGACCACtattaatattattattatattaGCATACACCATATCACTGCTAGGAGTATTAGTCTATCAATCCCACCTAATATCATCCCTATTATGCCTAGAAGGCATCAATCAATA-TAT--------ATCATAAATACTCTTATAACTTTAAATATACATTTCACCC---------TAGC--ATCCA---TAATA-----CCCATTATCCTCTTAGTATTTGCTGCCTGAGAAGCCGCAGTGGGCCTTGCCTCACTAGTTTCAATCTCCAGGACATATGGCCTAGATTACATACAAAATCTAAGTTTACTTCAATGCTA------------------------------AAAATTATTACTCCAACAATTATACTGT
862 s mm5.chrM 9820 380 + 16299 -AAA--AAAAATTAATGATTTCGACTCATTAGATTATGATGA-TGTTCATAATTACCAATATGCCATCTACCTTCTTCAACCTCACCATAGCCTTCTCACTATCACTTCTAGGGACACTTATATTTCGCTCTCACCTAATATCCACATTACTATGCCTGGAAGGCAT-----AGTATTATCCTTATTTATTATAACTTCAGTAACTTCCCTAAA---------CTCCAACTCCAT--AAGC---TCCATACCAATC-----CCCATCACCATCTTAGTTTTCGCAGCCTGCGAAGCAGCTGTAGGACTAGCCCTACTAGTAAAAGTTTCAAACACGTACGGAACAGATTACGTCCAAAATCTCAACCTACTACAATGCTA------------------------------AAAATTATTCTTCCCTCACTAATGCTAC
863 s rn3.chr2 24394176 379 - 258222147 -AGA--TAAAGTGAATGATTCCAACTCATTAGATTTTAATA---TTTAATAACTCCCAATGTGTATTTGGTTTGTTTTAACAATATTCTAGCTTATATAACATGCTTAATAGGACAA------TATCAGTCACACCTATTAAGTTC---ACTACATTTAGAAGGCAT-----AATATTGC------TTATTGGAGGAATGTTTATGCTTTTAAA---------TACCTATTT-----TAACTTATTCACCTCAATA-----CCAGTCCTTTTATTAGT-TTTATAGCCTGCAAGG-----------CTTTCAACTATAATAATGGTATCTAGTACACATGTCCTGGACTATGTGCACCATGTAAACTTTCTCAAATATTATTAAACTAGTATCTGCAAGAAGACACTGTTAAAAT--TCATTCAAACAACTATATGGT
864 s canFam1.chrM 9855 379 + 16727 -AAGCCAAAAACAAATGATTTCGACTCATTAGATTATGATTT-ATCTCATAATTATC---ATGTCCATAGTATATATTAATATCTTTCTGGCATTCATTCTTTCTCTAATAGGTATACTTGTTTATCGATCACACCTAATATCATCGCTACTATGCTTAGAGGGCAT-----AATATTATCACTATTTGTAATAATATCTGTAACTATTCTCAA---------CAATCACCTCACATTAGC-----CAGCATGATA-----CCAATCGTACTACTAGTATTTGCTGCCTGCGAAGCAGCATTAGGACTATCTCTACTAGTTATAGTATCTAACACCTACGGGACTGATTACGTACAAAACCTAAACCTTTTACAATGCTA------------------------------AAAATTATCATCCCTACTATCATACTAA
865 s galGal2.chrM 11140 379 + 16775 -AAC--TAAGACAGCTGGTTTCGACCCAGCAAATTATAGACC-CACCTATAACTTTCTT-ATGTCTCCCCTACACTTCAGCTTCTATTCTGCATTCACATTCAGCAGCCTAGGACTAGCATTCCACCGAACACACCTCATCTCTGCCCTACTATGCCTAGAGAGCAT-----AATACTATCCATATTCATCCCCCTCTCAATCTGACCAGTAGA---------AAACCAAACCC---CATC--ATTCGCCCTTGTA-----CCTATCCTAATACTAGCCTTCTCAGCATGCGAAGCTGGCACAGGCCTAGCCATACTAGTAGCTTCTGCACGAACACATGGCTCTGACCACCTACACAACCTAAACCTTCTACAATGCTA------------------------------AAGATCATCCTACCAACAATCATACTCT
866 s danRer1.chrM 10951 381 + 16596 AAAG--AAAGACCCTTGATTTCGGCTCAAATAATTGCGGTGTAAACCCGTAACTCCCTT-ATGACACCCACGCACTTTAGTCTTAACGCAGCATTTATACTAGGCTTAGCAGGACTTACATTTCACCGTGTTCACCTCCTATCAGCATTATTATGTTTAGAAGGCAT-----AATATTATCTTTATTTATTTCCATAGCCCTTTGAACTTTAAA---------AACAGAGTCAAT--AAGTTTATCCA---CAGCC-----CCTATACTACTACTAGCCTTTTCTGCCTGTGAAGCAAGTGCCGGCCTAGCACTCCTAGTAGCCACAGCTCGAACCCACGGATCTGACCACATAAAAAACCTTAATCTACTACAATGCTA------------------------------AAAGTACTGATCCCCACTATTATGCTAT
867
868 a score=36041.0
869 s hg17.chrM 10794 154 + 16571 TACCACTGACATGACTTTCCAAAAAGCACATAATTTGAATCAACACAACCACCCACAGCCTAATTATTAGCATCATCCCCCTACTATTTTTTAACCAAATCAACAACAACCTATTTAG--CTGTTCCCCAACCTTTT------CCTCCGACCCCCTAACAAC
870 s panTro1.chr3 35472519 151 - 209662276 TACCAATGATATGATTCTCTAAAAATTATATAATCTGAATCAACGTGGTTATCCACAGCCTGCTCATCAGCTTTATCAGCCTACTATTTTTTAACCAATTGAACGATAACTCATCCAA--CTTCTCATTAATCTTT---------TCTGACCTGCTGACATC
871 s mm5.chrM 10200 154 + 16299 TACCACTAACCTGACTATCAAGCCCTAAAAAAACCTGAACAAACGTAACCTCATATAGTTTTCTAATTAGTTTAACCAGCCTAACACTTCTATGACAAACCGACGAAAATTATAAAAA--CTTTTCAAATATATTCT------CCTCAGACCCCCTATCCAC
872 s rn3.chr16 53342361 146 + 90224819 TTCCATTAACCTGACTGTTAAAA--------AAACTGAACTAATGTCACCTCTTATAGCTTCTTAGTAAGCTTTATTAGTCTATCACTATTATAGCAAAATGATGAAAATAACTTAAA--TTTCTTAATTATATTTT------CTTTAGCCCCCTTATCTAC
873 s canFam1.chrM 10234 154 + 16727 TCCCCCTTACATGAATATCAAAGCCTAACATAATCTGAATTAACACGACAACATATGGTTTGCTAATCAGCTTAATCAGCTTATTCTACCTAAACCAACCAAATGATAATACATTGAA--CTCCTCCTTAATATTTT------TCTCTGATTCCCTATCGGC
874 s galGal2.chrM 11519 154 + 16775 TGCCCACAGCCCTCTTATCCCCAGCAAAATCCATATGAACTAACACCACAATATACAGCCTTCTAATCGCCTCGATCAGCCTACACTGACTAACCCCATCATACTACCCCACAAAAA--------CCCTAACCCTCTGAACAGGCATAGACCAAATCTCAAC
875 s danRer1.chrM 11332 157 + 16596 TCCCTACAATCTGATTATCTTCATCAAAATGACTGTGAACAACTACAACAATAAACAGCTTTTTAATTGCCTTTATTAGCTTAACATGACTAAAATGAACCTCGGATACAGGGTGAAATGCTTCTAACTCGTACATA-----GCTGCAGACCCACTATCAAC
876
877 a score=205901.0
878 s hg17.chrM 10948 423 + 16571 CCCCCTCCTAATACTAACTACCTGACTCCTACCCCTCACAATCATGGCAAGCCAACGCCACTTATCCAGCGAACCACTATCACG--AAAAAAACTCTACCTCTCTATACTAATCTCCCTACAAATCTCCTTAATTATAACATTCACAGCCACAGAACTAATCATATTTTATATCTTCTTC-----GAAACCACACTTATCCCCACCTTGGCTATCATCACCCGATGAGGCAACCAGCCAGAACGCCTGAACGCAGGCACATACTTCCTATTCTACACCCTAGTAGGCTCCCTTCCCCTACTCATCGCACTAATTTACACTCACAACACCCTAGGCTCACTAAACATTCTACTACTCACTCTCACTGCCCAAGAACTATCAAACTCCTGAGCCAACAACTTAATATGACTAGCTTACACAATAGCTTTTAT
879 s panTro1.chr3 35472670 421 - 209662276 ACCCCTTCTAATCTTAACAGCCTGACTACTGCCTCTTATAATTCTAGCAAGCCAATACCACCTGTCCAATGAATCACCCCCGTG---AAAAAATTCTATATTTTGATATTGATTTCTCTACAGACTTTTTTAATCCTAGCATTCACTGCCACAG-ACTAATCATATTTTATATCCTCTTT-----GAAGCCACACTAGTTCCCACCCTAATTATCATCACCCACTGAGGCAACCAACCAGAACGCCTCAATGCAAGATCACACTTCTTATTTTACACACTAGTAGGATTCCTTCCTTTACTTGTAACATTTGTTTATACTCCAAATACCTCAGGTTCACTAAATATGCTAGTAATAATATTTACTATCCAAGAGCTATTAACCTCCTGATCCAATAATCTTATATCACTAGCATGTATCATGGCCTTCAT
880 s mm5.chrM 10354 423 + 16299 ACCATTAATTATTTTAACAGCCTGATTACTGCCACTAATATTAATAGCTAGCCAAAACCACCTAAAAAAAGA--TAATAACGTACTACAAAAACTCTACATCTCAATACTAATCAGCTTACAAATTCTCCTAATCATAACCTTTTCAGCAACTGAACTAATTATATTTTATATTTTATTT-----GAAGCAACCTTAATCCCAACACTTATTATTATTACCCGATGAGGGAACCAAACTGAACGCCTAAACGCAGGGATTTATTTCCTATTTTATACCCTAATCGGTTCTATTCCACTGCTAATTGCCCTCATCTTAATCCAAAACCATGTAGGAACCCTAAACCTCATAATTTTATCATTCACAACACACACCTTAGACGCTTCATGATCTAACAACTTACTATGGTTGGCATGCATAATAGCATTTCT
881 s rn3.chr2 24395464 406 - 258222147 CTCTCTTCTAATACTGAAGCCCTGATTACTTTCCTTAATAATCACAACAAGTCAGTGCC-CTTTTCCAAAGATTCAAATACACA--AAAATACTGATACGTGTCAGTATTAACTGTCC-----AGATTCATAATGATTGCATTTTCCTTCATATAGAAAATGCTATTTTATCTTTTTATTCAAAAAAAACCCTACCAATCTCAGCTTTA---ATTATTACCTAATGAGGTATTCAAACAGAATGATTAAAAGCAGG-----ATTTCCTATTCTATGTACTGAGTGG--CCATTATATCTCCTGTAGCAGTTAGTTATATCATGTATACTACTGGCTCACTACAC-TCTTAACGATGTTCAACTAAATTAAAATACTGTCATATTCCCAGTCAAACAG-----GATGAAGAATCCACATTAAGATGTCTCT
882 s canFam1.chrM 10388 423 + 16727 ACCACTATTAGCACTCACAACATGACTTCTGCCCCTTATACTTATAGCAAGTCAACACCATTTATCAAAAGAACCCTTAACTCG--AAAAAAACTATATATTTCAATACTAATTCTTCTCCAATTGTTCCTAATTATAACTTTCACAGCCTCTGAACTCATCTTCTTTTACATCCTATTT-----GAAGCAACACTGATTCCGACCCTGATCATTATTACCCGATGAGGAAATCAAACTGAACGACTAAACGCAGGACTCTACTTCTTATTTTATACTTTAATAGGATCCCTCCCACTCCTAGTAGCTCTCCTTTATATCCACAATTTCATGGGCTCCCTAAATTTTCTCATAATTCAATACTGAATCCAGCCTCTGCCAAACTCCTGATCTAATATTTTCCTATGACTGGCATGCATAATAGCATTCAT
883 s galGal2.chrM 11673 423 + 16775 TCCCCTCTTAGTACTCTCCTGCTGGTTTCTCCCCCTCATAATTATAGCTAGCCAAGGCCACCTACAACATGAACCCCACAAACG--AAAACGAATATTCATCTCCACCTTAATCATCATCCAACCATTCATCATCCTAGCCTTCTCAGCAACTGAACTCATACTATTCTACATCTCATTC-----GAAGCAACCCTAATCCCAACCCTCATCTTAATCACACGCTGAGGAAACCAACCAGAACGACTTAGCGCAGGCATTTACCTTCTATTCTATACCCTAATTAGCTCTCTTCCCCTACTAGTCTCCATCCTCTACCTTCACACAAATACTGGAACCCTCCACCTACCCATTATCAAACTCACCCACCCCAACCTACCTGCCTCCTGAACAAGCTTATTATCTAGCCTAGCTCTCCTAATAGCCTTTAT
884 s danRer1.chrM 11489 423 + 16596 ACCTCTTCTAGTACTAACCTGTTGACTTCTTCCATTAATGATTCTAGCTAGCCAAAATCACATCAACTCGGAGCCTGTAAACCG--ACAACGAATATACATTACACTTCTTGCCTCTTTACAAACTTTCATAATTATGGCGTTTGGCGCTACAAAAATCATTATATTCTACATTATATTC-----GAAGCTACACTTATCCCAACACTAATCATTATTACCCGATGAGGTAATCAAGCTGAGCGCCTTAACGCAGGTACTTACTTTCTTTTCTATACATTAGCAGGCTCTCTACCTCTTTTAGTAGCCCTCCTATTACTGCAACAATCAACAGGAACCCTATCAATACTAGTACTTCAGTACTCAGACCCACTTTTACTTAACTCTTGAGGACATAAAATCTGATGAGCCGGCTGCTTAATTGCATTCCT
885
886 a score=87189.0
887 s hg17.chrM 11371 111 + 16571 AGTAAAGATACCTCTTTACGGACTCCACTTATGACTCCCTAAAGCCCATGTCGAAGCCCCCATCGCTGGGTCAATAGTACTTGCCGCAGTACTCTTAAAACTAGGCGGCTA
888 s panTro1.chr3 35473091 111 - 209662276 AGTAAAAATACCTCTATATGGACTTCACCTATGACTCCCTAGAGCCCATGTAGAATCCCCTATTGCCAACTCAATAGTACTTGCAGCAGTACTCCTAAAGCTAGGTGGTTA
889 s mm5.chrM 10777 111 + 16299 TATTAAAATACCATTATATGGAGTTCACCTATGACTACCAAAAGCCCATGTTGAAGCTCCAATTGCTGGGTCAATAATTCTAGCAGCTATTCTTCTAAAATTAGGTAGTTA
890 s rn3.chr2 24395989 80 - 258222147 AAAAAAGATGTCTCT-TACTGCCTCTACC-----------AAACCACAAGTAG--------------GAATGAGTTGTCCTTGCAGTCACAGT-GTAAACCTGGATG----
891 s canFam1.chrM 10811 111 + 16727 AGTAAAGATACCTCTATACGGCCTCCACTTGTGACTACCAAAAGCACACGTAGAGGCCCCTATTGCCGGCTCCATAGTACTTGCCGCTGTACTCCTAAAACTAGGGGGCTA
892 s galGal2.chrM 12096 111 + 16775 AGTCAAAGCACCCCTATACGGACTACACCTATGACTGCCTAAAGCCCATGTAGAAGCACCAATCGCAGGCTCCATACTACTCGCTGCTCTACTACTAAAACTAGGCGGATA
893 s danRer1.chrM 11912 111 + 16596 AGTAAAAATACCGCTATATGGGATACACCTTTGATTACCAAAAGCACATGTAGAAGCCCCTGTAGCAGGATCTATAATTCTAGCGGCAGTGCTACTAAAACTAGGAGGCTA
894
895 a score=48447.0
896 s hg17.chrM 11482 88 + 16571 TGGTATAATACGCCTCACACTCATTCTCAACCCCCTGACAAAACACATAGCCTACCCCTTCCTTGTACTATCCCTATGAGGCATAATT
897 s panTro1.chr11_random 29231538 88 - 53199993 CGGTATAATACGGCTTACCCTTATCCTCAGCCCCCTAACAGAATATATAGCCTACCCCTTCCTCATACTATCCCTATGAGGGATAGTT
898 s mm5.chrM 10888 88 + 16299 CGGAATAATTCGCATCTCCATTATTCTAGACCCACTAACAAAATATATAGCATACCCCTTCATCCTTCTCTCCCTATGAGGAATAATT
899 s rn3.chr2 24396069 71 - 258222147 TGATGTA---------------ATTTTAAATCTACTCACAGGACATACAATGTACTCAT--CGTCTATTGGCCCCATTAAGAATACTT
900 s canFam1.chrM 10922 88 + 16727 TGGCATGATACGAATTACAACCCTACTAAATCCCCTGACCAATTTCATAGCATACCCCTTCATAATATTGTCTCTATGAGGCATAATC
901 s galGal2.chrM 12207 88 + 16775 TGGCATCATACGAGTCACCCTCCTAATGGAGCCCGTATCCAACTTCTTACACTACCCCTTCCTCACCCTAGCCCTATGAGGTGCCCTA
902 s danRer1.chrM 12023 88 + 16596 CGGTATGATACGAATAATAGTAATATTAGATCCTTTATCTAAGCAACTAGCATACCCGTTTATTATCCTTGCTCTATGAGGAGTAATC
903
904 a score=59688.0
905 s hg17.chrM 11570 91 + 16571 ATAACAAGCTCCATCTGCCTACGACAAACAGACCTAAAATCGCTCATTGCATACTCTTCAATCAGCCA---------------CATAGCCCTCGTAGTAACAGCCA
906 s panTro1.chr11_random 29231626 89 - 53199993 ATGACAAGCTCCATTTGTCTACAACAAACCGATCTAAAA----TCATTGCCTACTCCTCTGTAAGCCATATACCACTTGTCATCATAGCTCTC-------------
907 s mm5.chrM 10976 91 + 16299 ATAACTAGCTCAATCTGCTTACGCCAAACAGATTTAAAATCACTAATCGCCTACTCCTCAGTTAGCCA---------------CATAGCACTTGTTATTGCATCAA
908 s canFam1.chrM 11010 91 + 16727 ATAACAAGCTCTATCTGTCTCCGTCAAACAGATCTAAAATCCCTAATTGCATACTCCTCAGTTAGTCA---------------TATGGCACTGGTTATCGTAGCGG
909 s galGal2.chrM 12295 91 + 16775 ATAACTAGCTCTATCTGCTTACGCCAAACAGACCTAAAATCCCTCATTGCCTACTCATCCGTAAGCCA---------------TATGGGCCTAGTCATCGCTGCAA
910 s danRer1.chrM 12111 91 + 16596 ATAACAGGATTAGTTTGTCTACGACAAACAGACTTAAAATCGCTAATTGCCTATTCATCAGTAGGCCA---------------TATGGGACTAGTTGCAGGAGGAA
911
912 a score=195175.0
913 s hg17.chrM 11661 417 + 16571 TTCTCATCCAAACCCCCTGAAGCTTCACCGGCGCAGTCATTCTCATAATCGCCCACGGACTCACATCCTCATTACTATTCTGCCTAGCAAACTCAAACTACGAACGCACTCACAGTC-------GCATCATAATCCTCTCTCAAGGACTTCAAACTCTACTCCCACTAATAGCTTTTTGATGACTTCTAGCAAGCCTCGCTAACCTCGCCTTACCCCCCACTATTAACCTACTGGGAGAACTCTCTGTGCTAGTAACCA------CGTTCTCCTGATCAAATATCACTCTCCTACTTACAGGACTCAACATACTAGTCACAGCCCTATACTCCCTCTACATATTTAC----CACAACACAATGGGGCTCACTCACCCACCACAT--TAACAACATAAAACCCTCATTCACAC---GAGAAAACACCCT----------CATGTTCATAC
914 s panTro1.chr11_random 29231715 419 - 53199993 --CTAATCCAAACCCCTTGAAGCTTTACAGGTGCCGTCAGCCTTATAATTACCCATGGAGTCACTTCATCCCTGTTATTCTGCCTAGCAAATTCCAACTACGAGTG-------AGTCCAAAACGGAATCATATTACTTACCTGAGGCCTTCAAATACTCCTCCCACTGATAGCCTCATGATGACTTCTAGCAAATCTCACTAATCTTGCCTTA-CCCCTACCATTAATCTAGTAAGGGAACTCTCTGTG------ATCATGGCTTCATTCTCCTGATCAAACATCGCTATTATGCTTACAGGACTTAATATACTAATTACAACCCTCTACTCC--CTACATA--TACCAATCACAACACAATGAGGGACACTTACATATTACAT--TAACA--GTTAAACCTTCCTTTACAC---AAGAAAATACATTAATATTTATACATGT---TAC
915 s mm5.chrM 11067 427 + 16299 TCATAATCCAAACTCCATGAAGCTTCATAGGAGCAACAATACTAATAATCGCACATGGCCTCACATCATCACTCCTATTCTGCCTAGCAAACTCCAACTACGAACGGATCCACAGCC-------GTACTATAATCATGGCCCGAGGACTTCAAATGGTCTTCCCACTTATAGCCACATGATGACTGATAGCAAGTCTAGCTAATCTAGCTCTACCCCCTTCAATCAATCTAATAGGAGAATTATTCATT------ACCATATCATTATTTTCTTGATCAAACTTTACCATTATTCTTATAGGAATTAACATTATTATTACAGGTATATACTCAATATACATAATTAT----TACCACCCAACGCGGCAAACTAACCAACCATAT--AATTAACCTCCAACCCTCACACACAC---GAGAACTAACACTAATAGCCCTTCACATAATTCC
916 s rn3.chr2 24396826 404 - 258222147 -TTCTACTTGAACACCACGGAGTCCCACAGGCTC-GCAGCCCTGATGAGTGCCCATGGTCTCAAGGTATAAACAGCTGTCTGCCTTACAGTCTCCAACTAAACCTGAATTCATATCC--------AACTACGTTGTTACCTTGCAGGTAACAACCATTACTGTCTTCGATAAC---GTGCTAAGTGTGGGCTAGC------AATCTAGCCTTTACTGTCAGATACCACCTTCTTAGGGAA-TATTTGTG------TTTACAACT-CGTTTTCATGATTTAGTTTTACCCTCATTATGGCAGGATTTACCAGACCAATTAAAACCGTCTACTAGCTCTGCAGAATCAT----CGCAAGGCAATGAGGAAAACTTATATTCCACAT--TAACA--GTACCAACCTCTTCTGCATTTGGAAAAATGACTCTTCTCTTCCCAC----------
917 s canFam1.chrM 11101 417 + 16727 TTCTTATTCAAACACCATGAAGTTATATAGGTGCAACAGCTCTAATAATTGCCCATGGTTTAACATCCTCAATACTATTCTGCTTAGCCAACTCCAATTACGAACGAATCCATAGCC-------GTACTATAATTCTCGCACGAGGACTTCAAACTCTCCTTCCCCTAATAGCAGCCTGATGACTATTAGCAAGCCTCACAAATCTGGCTCTCCCTCCAACAATTAATCTTATCGGAGAACTATTTGTA------GTGATATCCTCATTCTCATGATCCAACATTACTATTATCCTAATAGGAATTAACATTATCATCACCGCCCTATACTCACTTTATATATTAAT----CACCACACAACGTGGTAAATATTCCCACCATAT--CAAAAATATCAAACCATCATTCACAC---GAGAAAATGCCCTAATGACCTTGC----------
918 s galGal2.chrM 12386 417 + 16775 GTATAATCCAAACCCAATGATCATTCTCAGGTGCAATAATCCTCATAATCTCCCATGGACTAACCTCTTCCCTTTTATTCTGCCTAGCAAACACAAACTACGAACGGACACACAGCC-------GCATTCTTATCCTGACACGAGGCCTCCAACCCCTCCTACCATTGATATCAGTATGATGATTACTAGCCAACTTAACCAACATGGCCCTGCCCCCAACCACCAACCTGATAGCAGAACTAACAATT------ATAGTTGCCCTCTTCAACTGATCCTCCCCCACAATTATCTTAACCGGCACTGCAACACTCCTAACCGCCTCTTACACCCTCTACATACTACT----CTCAACCCAACGAGGCACTCTTCCATCCCACATCACAACAACCCCCAAC--TCAAACACTC---GAGAACATCTTCTCATAACCCTCC----------
919 s danRer1.chrM 12202 417 + 16596 TTTTGATTCAAACCCCCTGAGGATTTACAGGAGCAATTATTTTAATAATCGCCCACGGACTAACCTCATCCGCCCTATTTTGCTTAGCTAACACATCGTATGAACGAACTCATAGCC-------GGACCATAATCCTCGCTCGAGGACTCCAGATAGTGCTACCGCTAGCAACAGTATGGTGATTTATTGCTAATCTGGCCAACCTAGCACTTCCACCTCTACCAAACTTGATAGGAGAACTTATGATT------ATCACAGCCCTATTTAACTGATCTCCATGAACAATTATTATTACAGGAATAGGAACCTTAATTACAGCAAATTATTCACTTTATATATTTTT----AACATCTCAACGAGGCTCAATCCCAGAACACAT--CACCAATCTTTCACCATCCCACACCC---GAGAACATCTCTTAATGACTTTAC----------
920
921 a score=1681.0
922 s hg17.chrM 12078 63 + 16571 ACCTATCCCCCATTCTCCT-CCTATCCCTCAACCCCGACATCATTACCGGGTTTTCCTCTTGTA-------
923 s panTro1.chr11_random 29232134 55 - 53199993 ACCT-------ATTCTTCT-ATTAT-CCTAAATCCTAAAATTATTATGGACTTTACATGCTGTA-------
924 s mm5.chrM 11494 53 + 16299 ACTT-------ATTCTTCTAACTAC----CAGTCCAAAACTAATTACAGGCCTGACAATATGTG-------
925 s canFam1.chrM 11518 63 + 16727 ACCTACTGCCCCTACTCCT-CCTATCCCTTAACCCTAAAATTATTCTCGGTCCCATCTACTGTA-------
926 s galGal2.chrM 12803 63 + 16775 ACATCATCCCCATACTAAC-ACTCATCCTCAAACCAGAACTAATCTCAGGAACCCCTCTATGCA-------
927 s danRer1.chrM 12619 64 + 16596 ACCTAATTCCTATCATCTT-ACTTATATTAAAACCAGAACTTATGTGAGGT------TGATGTAACTAGTA
928
929 a score=871.0
930 s hg17.chrM 12141 2 + 16571 AA
931 s panTro1.chr11_random 29232189 2 - 53199993 GC
932 s mm5.chrM 11547 2 + 16299 AA
933 s rn3.chr2 24397331 2 - 258222147 AA
934 s canFam1.chrM 11581 2 + 16727 AG
935 s galGal2.chrM 12866 2 + 16775 AA
936 s danRer1.chrM 12683 2 + 16596 AG
937
938 a score=150956.0
939 s hg17.chrM 12143 196 + 16571 TATAGTTTAAC-CAAAACATCAGATTGTGAATCTGACAACAGAGGCTTACGACCCCTTATTTACCGAGA--------AAGCT-CACAAGAA---------CTGCTAACTCATG--CC-CCCATGTCTAACAA-CATGGCTTTCTCA--ACTTTTAAAGGATAACAGCT-ATCCATTGGTCTTAGGCCCCAAAAAT-TTTGGTGCAACTCCAAATAAAAGTAAT
940 s panTro1.chr3 35473859 196 - 209662276 TATAGTTTAAC-CAAAACATTAGATCGTGGATCTAACAATAGAAGCCTGCAACTTCTTACCTACCAAGA--------AAGTA-TGCAAGAA---------CTGCTAACTCATG--CC-CCCATGTTTAACAA-AATGGCTTTCTCA--ACTTTTAAAGGATTGGAGTT-ATCCATCGGTCTTAGGAACTAAAAAC-ATTGATGTAACTCCAAATAAAAGTAAC
941 s mm5.chrM 11549 194 + 16299 TATAGTTTACA-AAAAACATTAGACTGTGAATCTGACAACAGGAAA-TAAACCTCCTTATTCACCAAGA--------AAGAT-TGCAAGAA---------CTGCTAATTCATG--CT-TCCATGTTTAAAAA-CATGGCTTTCTT---ACTTTTATAGGATAATAGTA-ATCCATTGGTCTTAGGAACCAAAAAC-CTTGGTGCAAATCCAAATAAAAGTAAT
942 s rn3.chr2 24397333 182 - 258222147 TATATTTTATG-TTAACCATTACATTGTT--TCTAATAACAGAAAATTACAG---CTTGTTCCCTGAGA--------CA-TG-TGAAAGAC---------ATACTGATTCACAGCCC-CCCATGTGTGACAA---------TCTTA--AGTTTGAACAGGTAAAAGTA-ATTTACTACTTTGAAGGGC--AAAAC-TTTGGTCTGACTCCAAATAGAAGTAAT
943 s canFam1.chrM 11583 196 + 16727 CATAGTTTAAC-AAAAACATTAGATTGTGAGTCTAACAATAAAAGCTCAAACCTTTTTGCTTACCGAAA--------AAGTACTGCAAGAA---------CTGCTAATTCATG--CT-CCCATGCATAAGAA-CATGGCTTTTTCA--ACTTTTATAGGATAGAAGTA-ATCCGTTGGTCTTAGGAACCAAAAA--ATTGGTGCAACTCCAGATAAAAGTAAT
944 s galGal2.chrM 12868 204 + 16775 CATAGTTTAAC-CCAAACATTAGATTGTGATTCTAAAAATAGGAGTTTAACCCTCCTTGTTCGCCGAGGGGAGGCCCAAGCC-AGCAAGAA---------CTGCTAATTCCTG--CA-TCTGAGCTTTAAAC-CTCAGTCCCCTTA--ACTTTTAAAGGATAAGAGCA-ATCCGTTGGTCTTAGGAACCACCTAT-CTTGGTGCAAATCCAAGTAAAAGTAAT
945 s danRer1.chrM 12685 210 + 16596 TTTAGTTTAAAGTAAAATTTTAGATCGTGACTCTAAAGATAGGGGTTAAAGCCCCCTCACTCACCGAGG--------AAGAG-TAGGAAAACAGTAAATGCTGCTAATATTTA--CCAACCATGGTTAAACTCCATGGCTTCCTTACCGCTTCTAAAGGATAATAGTACATCCATTGGTCTTAGGAACCAAAAACTCTTGGTGCAACTCCAAGTAGAAGTT--
946
947 a score=-27322.0
948 s hg17.chrM 12339 84 + 16571 AACCATGCA-------CACTAC------------TATAACCACCCTAACCCTGACTTCCCTAATTCC--------CCCCAT--CCTTAC----------CACCCTCGTTAACCCTAACAAAAA------
949 s panTro1.chr3 35474055 84 - 209662276 AAACATG------------TATCTTCCATG--GGTATAACAGCCCTAATCC------CCTTAATTCC-------------------TACTGATTACTATTATCTTAGCCAACTCCTGCAAAAT------
950 s mm5.chrM 11743 83 + 16299 CAA----------------TAT------------TTTCACAACCTCAATCTTATTAATCTTCATTCTTCTACTATCCCCAA--TCCTAA----------TTTCAATATCAAACCTAATTAAAC------
951 s canFam1.chrM 11779 84 + 16727 AAATATA------------TTTTCTTCATG-CATAATCACAGCCCTAGTTA------TTCTTACTTT--------GCCCAT--CATTAT----------ATCCTCTACTAAACTTTACAAGAA------
952 s galGal2.chrM 13072 92 + 16775 --------GGAGACTCCACTGC--TCCTTAACACCCTCACAACATTAACACTACTCACCCTCCTTAC--------CCCTATTATCCTTC----------CCCCCCTCCTAAATCTAAAAA---------
953 s danRer1.chrM 12895 86 + 16596 ----------------TATGAC------TGATATGATCATACCTTTAACATTAA---TCCTAATTTT--------CGCAGTTTTATCAT----------ACCCCTTATTAAAACCAAAAAGCTATTCAA
954
955 a score=142193.0
956 s hg17.chrM 12423 342 + 16571 AAACTCATACCCCCATTATGTAAA---------ATCCATTGTCGCATCCACCTTTATTATCAGTCTCTTCCCCACAACAATATTCATGTGCCTAGACCAAGAAGTTATTATCTCGAACTGACACTGAGCCACAACCCAAAC-----AACCCAGCTCTCCCTAAGCTTCAAACTAGACTACTTCTCCATAATATTCATCCCTGTAGCATTGTTCGTTACATGGTCCATCATAGAATTCTCACTGTGATATATAAACTCAGACCCAAACATTAATCAGTTCTTCAAATATCTACTCATTTTCCTAATTACCATACTAATCTTAGTTACCGCTAACAACCTATTCCAACTGTTCATCGG
957 s panTro1.chr3 35474139 338 - 209662276 AGGCTCATACCCAAATTATGTAAAA------ACATC---TATCACATATGCCTTCATCATTAGCCTCATCCCAACAACAATGTTTATATGCACAGACCAAGAAGCCATTATCTCAAACTGACATTGAATGATGATCCAGACTCTCAAA-----CTCTCACTAAGCTTCAAACTAGACTACTTCTCCACAAAATTTATCCCAGTAGCGCTATTCATTACCTGAACTATTGTAGAATTATCAATATGATATATAAATTCAGACTCTAACATTAATCAATTTTTCAAG----TACTTATTTTCTTCATCATGATATTAATTCTGGTTACTGCCAACAACCTCTTTCAGCTCTTTATCGG
958 s mm5.chrM 11826 343 + 16299 ACA-TCAACTTCCCACTGTACACCACC----ACATC---AATCAAATTCTCCTTCATTATTAGCCTCTTACCCCTATTAATATTTTTCCACAATAATATAGAATATATAATTACAACCTGGCACTGAGTCACCATAAATTC-----AATAGAACTTAAAATAAGCTTCAAAACTGACTTTTTCTCTATCCTGTTTACATCTGTAGCCCTTTTTGTCACATGATCAATTATACAATTCTCTTCATGATATATACACTCAGACCCAAACATCAATCGATTCATTAAATATCTTACACTATTCCTGATTACCATGCTTATCCTCACCTCAGCCAACAACATATTTCAACTTTTCATTGG
959 s rn3.chr2 123593513 320 + 258222147 AAA-TCAGTTTCCC-TTCTGTATAAAT----TCATT---TATCAAATATGCTTTCCTTCTTAGCCTATTACCTCTAATATCATTCTACTATTCTGACACA-----CCTGATTACTAACTGATACTGAATTACTATTAATTATTCCAAA---------CTATCAGTTTAACATTTGACTATTTCTGCATATTCTTTTTACTCGTGACTTTATTCATAACCTAATCAGTCATAAAGTTTTCTTCATGATCTATACACCCCAACCTCTCCTAAACTATTTTTATCAAATACCTCCTT-TATTTTTAATTTCATTAATTATCTTTGCTTCAACCAACAAC------------TTTATTGG
960 s canFam1.chrM 11864 341 + 16727 AAG-CTATACCCATACTATGTAAAA------ACCGC---TACTTCTTACGCGTTCATAATTAGCATAATTCCCACAATAATATTCATCTACTCAGGACAGGAAACAATCATTTCAAACTGGCATTGAATAACAATCCAAACTATAAAA-----CTATCCATGAGTTTCAAATTAGACTACTTCTCAATAATCTTTGTACCTGTAGCCCTTTTTGTCACGTGGTCTATCATAGAATTCTCTATATGATATATACACTCCGATCCTTACATTAACCGGTTTTTCAAGTACCTTCTCTTATTCCTCATCACTATAATAGTCCTAGTTACCGCAAACAACATATTCCAACTATTCATTGG
961 s galGal2.chrM 13164 337 + 16775 -------ACTCCCCCATATCCATCACC----AAAAC---CATTAAAACCGCCTTCCTAATCAGCCTAATCCCAACAACAATCTTCATCCACTCAGGGGCAGAAAGCATTGCCACCCACTGAGAATGACAATTTATCCCCAACTTCAAG-----ATCCCCATCTCCCTAAAAATAGACATATACTCCATAATATTCTTCCCCATTGCACTATTTGTAACCTGATCCATCTTAGAGTTCGCAACATGATACATAGCATCCGAACCATTTATTACAAAATTCTTTACCTACCTACTCACCTTCCTCATCGCCATATTAACACTAACCATCGCAAATAACATATTCCTCCTATTTGTAGG
962 s danRer1.chrM 12981 343 + 16596 -----AATCCAACAACTCTTTCCAAGCTTGAAATGC---TGTCCATGTATCTTTCTTAATTAGTCTTATCCCACTTACAATGATGCTGTACAAAGAATCAGACCATGTTGTAATATGCTGAAGCTGAATAAATACACAAGCGTTTAAC-----GTAGACCTAAGTTTTAAATTTGACTACTATTCTGTGACTTTTACCTCAATCGCCTTATTCATCACCTGGTCAATTTTAGAATTTGCATCATGATATATAGCCTCTTATCCACAAAAAGAATTATTTTACAAATATTTACTTCTTTTTCTTATATCAATAATTATCTTAGTTACAGCCAACAATCTATTTCAACTATTTATTGG
963
964 a score=543567.0
965 s hg17.chrM 12765 648 + 16571 CTGAGAGGGCGTAGGAATTATATC-CTTCTTGCTCATCAGTTGATGATACGCCCGAGCAGATGCCAACACAGCAGCCATTCAAGCAGTCCTATACAACCGTATCGGCGATATCGGTTTCATCCTCGCCTTAGCATGATTTATCCTACACTCCAACTCATGAGACCCA----CAACAAATAGCCCTTCTAAA------CGCTAATCCAAGCCTCACCCCACTACTAGGCCTCCTCCTAGCAGCAGCAGGCAAATCAGCCCAATTAGGTCTCCACCCCTGACTCCCCTCAGCCATAGAAGGCCCCACCCCAGTCTCAGCCCTACTC-CACTCAAGCACTATAGTTGTAGCAGGAATCTTCTTACTCATCCGCTTCCACCCCCTAGCAGAAAATAGCCCACT-AATCCAAACTCTAACACTA-TGCTTAGGCGCTATCACCACTCTGTTCGCAGCAGTCTGCGCCCTTACACAAAATGACATCAAAAAAATCGT-AGCCTTCTCCACTTCAAGTCAACTAGGACTCATAATAGTTACAATCGGCATCAACCAACCACACCTAGCATTCCTGCACATCTGTACCCAC--GCCTTCTTCAAAGCCATACTATTT-ATGTGCTCCGGGTCCATCATCCACAACCTTAACAATGAACAAGATATTCGAAAAAT
966 s panTro1.chr11_random 29232784 648 - 53199993 ATGAGAAGGTATAGGAATCATGTC-TTTCTTACTAACTGGCTGACAATATGGCCGAGCAGATGCTAATACAGCAGCCCTCCAAGCAGTCCTGCACAATCGCATCGGCGATATTGGTTTTATTTTAGTTATAGCATGGTTCCTCTTTTCCTCCAACACATGAG----AGATTCAACAAGCATTCATTCTAAACCCTACCTCTAATCC---CCT---TCCATTAATTCGCCTTCTCTTAGCAGCAGCAGGAAAGTCAGCTAAATTCGGCCTCCATCCCTGACTTCCATCCGCCATAAAAGGCCCAACCCCAGCCTCAGCCCTGCTC-CACTCCAGCACTGTAGTTGTAGCAGGAGTTTCCCTGCTCATCCGCTTCTACCCTTTAATAGAAAATAACCT-CTGAACCCAAACCTTTACATTA-TCTCCAGGGGCTATTACCATCTTATTTACAGCAATCTGCGCTCTAACACAAAGTGATATTTAAAAAATCAT-AGCATTCTCCACCTCAAGTCAGCTGGGCCTTACGACAGTCACAATTGGCATGAATCAGCCACACCTAGCATTCCTTCACATCTGCAGCCAC--GCCTTTTTTAAAGCTATATTATTT-ATATGCTCAGGCTCCATCATCCACAATCTCAATGATGAACAAGATATTTGAAAAAT
967 s mm5.chrM 12169 648 + 16299 CTGAGAAGGGGTGGGAATTATATC-TTTCCTACTAATTGGATGATGGTACGGACGAACAGACGCAAATACTGCAGCCCTACAAGCAATCCTCTATAACCGCATCGGAGACATCGGATTCATTTTAGCTATAGTTTGATTTTCCCTAAACATAAACTCATGAG----AACTTCAACAGATTATATTCTCCAACAACAACGACAATCT---AAT---TCCACTTATAGGCCTATTAATCGCAGCTACAGGAAAATCAGCACAATTTGGCCTCCACCCATGACTACCATCAGCAATAGAAGGCCCTACACCAGTTTCAGCACTACTA-CACTCAAGTACAATAGTAGTTGCAGGAATTTTCCTACTGGTCCGATTCCACCCCCTCACGACTAATAATAA-CTTTATTTTAACAACTATACTT-TGCCTCGGAGCCCTAACCACATTATTTACAGCTATTTGTGCTCTCACCCAAAACGACATCAAAAAAATCAT-TGCCTTCTCTACATCAAGCCAACTAGGCCTGATAATAGTGACGCTAGGAATAAACCAACCACACCTAGCATTCCTACACATCTGTACCCAC--GCATTCTTCAAAGCTATACTCTTT-ATATGCTCTGGCTCAATCATTCATAGCCTGGCAGACGAACAAGACATCCGAAAAAT
968 s rn3.chr2 123593833 599 + 258222147 CTGAGAAGACATAGGTATTATATCACTTTCTACCA---------------------------GCAAACAGTGCAGCCCTGCAAGCAGTGTTGTGTAATCACAATGGAGTCATTAGATTAGTTTTAGCTACAGCATGAATCTTTGTAAACATCAACTCCTGAG----AACTTCAACAGATTTTTTTTCTTA-------CATCAACTT---AAC---TCCTCTCCTAGGCCTTCTAATTCCAGCCCCAGGAAAATCAGCACAATTTACTATCCGCTCCTGACTCCCATCAACCACAG-AGGCCCTTCCCCA-TCTCAGCATTCCTCTCATTCAAGTCCTGTAGTTGTTTCAGGAATCTTCTTAGTAATCAGACTTTACTCACTTG----AAATAACTA-CT--------ATTGTGATACTTGTGTCTTGAGTCACTACCCACATTGTTCACAGCCATCTGTGCAATTAC-TAAAATGACATTTAATTTTTTTTAAACATTTCGCACATTTAGCCAGTTAGGCCTTACAATAGTAGCTTTAGGTGTAAGTCAACCCTCTCTAGCTTTCCTTCACATCTGTACACACATACATTCTTCACAGCTATTCAGTTTCATGTGCCCAGG-------GTTCACAGCTTTAATGCTGAACAAGACATCTGGAAAAT
969 s canFam1.chrM 12205 648 + 16727 TTGAGAAGGAGTTGGCATTATATC-ATTCCTACTTATTGGATGATGGTACGGCCGAACCGATGCAAATACAGCCGCCCTACAAGCCGTCCTCTACAACCGTATTGGAGATGTAGGCTTCATTATAACCATAGCATGATTTCTACTAAACTTAAACACATGAG----ACCTTCAACAAATCTTCATTACGA---CAAACGATAATTTTAATCT---GCCACTACTTGGCCTACTACTAGCAGCTACCGGTAAATCTGCTCAATTCGGCCTACATCCCTGACTCCCCTCAGCCATAGAAGGCCCCACTCCTGTATCAGCCCTACTT-CACTCAAGCACAATAGTTGTAGCAGGAGTATTTCTTCTTATCCGCTTTCATCCACTAATAGAGCATAACCA-AACTATTCAAACCCTCACTTTA-TGCTTAGGGGCCATTACTACACTATTTACCGCAATCTGCGCTCTTACACAGAATGATATCAAAAAAATTGT-AGCGTTCTCTACCTCAAGCCAACTAGGCCTAATAATAGTAACAATTGGCATTAACCAGCCCTACTTAGCCTTCTTACACATCTGCACTCAC--GCATTTTTTAAAGCTATACTATTC-ATATGCTCAGGGTCAGTTATCCACAGCCTAAACGATGAACAAGACATTCGAAAAAT
970 s galGal2.chrM 13501 645 + 16775 ATGAGAAGGAGTAGGAATCATGTC-ATTCCTTCTCATTGGATGATGACAAGGACGAGCTGAAGCCAACACAGCTGCACTACAGGCAATAATCTACAACCGAATCGGAGACATTGGCCTCATCCTAAGCATAGCATGACTAGCCTCTTCCCTAAACACCTGAG----AAATTCAACAAATCACCCACCCAAACCAAA-CACCCACCC-----T---CCCCCTCCTTGGCCTAATCCTAGCCGCCACAGGAAAATCCGCTCAATTTGGCCTTCACCCATGACTTCCAGCAGCAATAGAAGGCCCAACCCCTGTCTCCGCCCTACTC-CATTCCAGCACAATAGTAGTTGCTGGAATTTTTTTACTCATCCGCACCCACCCCTTCCTGTCATCCAATAA-AACAGCCCTGACAACGTGCCTA-TGCTTAGGTGCTCTATCAACACTCTTTGCCGCAACATGCGCTCTCACTCAAAACGACATCAAAAAAATCAT-TGCCTTCTCCACTTCAAGCCAACTAGGCCTCATAATAGTCACAATTGGCCTAGACCTCCCCCAACTAGCCTTCCTCCACATCTCAACCCAT--GCCTTCTTTAAAGCTATATTATTC-CTATGCTCCGGCCTAATTATCCACAGCCTCAATGGAGAACAAGACATCCGCAAAAT
971 s danRer1.chrM 13324 651 + 16596 CTGAGAAGGGGTAGGAATCATATC-ATTTTTACTCATTGGCTGATGATTTGGGCGGACAGAGGCTAACACAGCATCTCTACAGGCCGTAATCTACAACCGAATAGGAGACATTGGATTTATCTTAACCTTAGCATGAATAGCAATATACCTCAACTCCTGAG----ACATTCAGCAAATTTTCATTCTTTCAAAAGACTTCGACATGACCAT---TCCCCAAATTGGACTTATTATTGCAGCCACAGGGAAATCAGCCCAATTTACACTTCACCCCTGACTACCATCAGCCATAGAAGGCCCTACACCAGTATCTGCTTTACTT-CACTCTAGCACTATGGTTGTAGCAGGGATTTTCCTTTTAATCCGTCTTCACCCAATTATAGAAACTAACAA-GCTTGCACCAACAATCTGTCTA-TGCCTTGGAGCATTAACAACTCTATTTGCAGCAACCTGTGCTCTAACCCAAAATGATATCAAAAAAATCGT-AGCTTTCTCAACATCAAGCCAACTAGGGCTAATGATAGTAGCAATTGGCCTAAACCAACCACATCTAGCATTTTTCCACATCTGCACTCAC--GCTTTTTTTAAAGCCATATTATTC-TTATGCTCAGGGGCAATTATTCACAGTCTTAACAACGAACAAGACATCCGTAAAAT
972
973 a score=1898.0
974 s hg17.chrM 13413 2 + 16571 AG
975 s mm5.chrM 12817 2 + 16299 AG
976 s rn3.chr2 123594432 2 + 258222147 GG
977 s canFam1.chrM 12853 2 + 16727 GG
978 s galGal2.chrM 14146 2 + 16775 AG
979 s danRer1.chrM 13975 2 + 16596 AG
980
981 a score=97800.0
982 s hg17.chrM 13415 148 + 16571 GAGGACTACTCAAAACCATACCTCTCACTTCAACCTCCCTCACC-------ATTGGCAGCCTAGCATTAGCAGGAATACCTTTCCTCACAGGTTTCTACTCCAAAGACCACATCATCGAAACCGCAAAC--ATATCATACACAAACGCCTGAGCCCT
983 s panTro1.chr3 35475123 148 - 209662276 GAGGGCTATTCAAGACTTTGCCCCTCACTTC-------CTCATCCTTTATTACTGGCAGTCTTGCACTTACAGGCATGCCTTTCCTTACAAGCTTTTACTCTAAGG-CCTCATCATTGAAACTGCAAACTCAT-TCATACACCAACGCCTGAGCCCT
984 s mm5.chrM 12819 148 + 16299 GAAACATCACAAAAATCATACCATTCACATC-------ATCATGCCTAGTAATCGGAAGCCTCGCCCTCACAGGAATACCATTCCTAACAGGGTTCTACTCAAAAGACCTAATTATTGAAGCAATTAAT--ACCTGCAACACCAACGCCTGAGCCCT
985 s rn3.chr2 123594434 146 + 258222147 GTGACTTAATAAAAGCCCTTCCTTTTACATC-------ATCTTGTCTAATTATCAGTGGACTTGCTTTAACTGGCATACC-TTCCTTACAGGATTTTACCCCAAAACCCTAGTCATTGAGGCCAGTAAC--ATCTAATA-ACCAATTCCTGAGCCTT
986 s canFam1.chrM 12855 148 + 16727 GTGGCCTATTTAAAGTCCTTCCCTTCACCAC-------AACCTCCCTTATTATCGGAAGCCTCGCATTAACAGGCATGCCTTTCCTTACAGGATTCTACTCCAAAGACCTGATCATCGAGTCCGCTAAC--ACGTCGAATACCAACGCCTGAGCCCT
987 s galGal2.chrM 14148 148 + 16775 GATGTCTACAAAAAACCCTCCCAATAACCAC-------CTCCTGCCTAACCATTGGCAACCTCGCTCTAATAGGAACTCCATTCCTAGCAGGCTTCTACTCAAAAGACCTGATCATCGAAAACCTAAAC--ACCTCATACATCAATACCTGAGCCCT
988 s danRer1.chrM 13977 148 + 16596 GGGGAACTTACCACACCCTACCAATAACCAC-------AAACTATTTGACCATCGGGAAAATAGCCCTTATGGGTACCCCCTTCCTTGCAGGATTTTTCTCAAAAGACGCTATCCTAGAAGCAATAACC--ACCTCCCATCTTAACGCCTGAGCCCT
989
990 a score=20235.0
991 s hg17.chrM 13563 55 + 16571 ATCTATTACTCTCATCGCTACCTCCCTGACAAGC----------GCCTATAGCACTCGAATAATT
992 s panTro1.chr3 35475271 55 - 209662276 TTCTGTTACTCTTATTGCCACTTCCTTGACA-GCTGTCCATGATACCTATA---------TTATT
993 s mm5.chrM 12967 55 + 16299 ACTAATTACACTAATCGCCACTTCTATAACA-GC---------TATGTACAGCATACGAATCATT
994 s canFam1.chrM 13003 55 + 16727 CTTAATTACACTCGTTGCCACATCCCTAACC-GC---------TGCCTACAGCACCCGAATTATA
995 s galGal2.chrM 14296 55 + 16775 CTCACTTACACTACTTGCCACATCTTTCACT-GC---------AACCTACAGCCTCCGCATAACC
996 s danRer1.chrM 14125 55 + 16596 AACACTAACATTAATCGCCACATCATTTACC-GC---------AGTTTATAGCTTCCGAATAATT
997
998 a score=63924.0
999 s hg17.chrM 13618 214 + 16571 CTTCTCACCCTAACAGGTCAACCTCGCTTCCCCACCCT---TACTAACATTAACGAAAATAACCC-CACCCTACTAAACCCCATTAAACGCCTGGCAGCCGGAAGCCTATTCGCAGGATTTCTCATTACTAACAACATTTCCCCCGC----ATCCCCCTTCCAAA--CAACAATCCCCCTCTAC-CTAAAACTCACAGCCCTCGCTGTCACTTTCCTAGGACTTC
1000 s panTro1.chr3 35475326 213 - 209662276 TTCTTCGCTCTTATAGGACAACCTTGCTTCACGACTCTGGCTGCTA---TTAATGAAAATAACCC-CTTTCTAATTAACTCAATTAAGCGCCTAACAGTTGGCAGCATATTCACTGGATTCCTCATCACCAACCGTATTATTCCTGCT-TCATCCCC-----AAAAACAACCATACCACTCCAC-CTGAAGCTCACAGCCCTAGGTGTCACCATCTTAGG-CTTC
1001 s mm5.chrM 13022 214 + 16299 TACTTCGTAACAATAACAAAACCGCGTTTTCCCCCCCTAATCTCCA---TTAACGAAAATGACCC-AGACCTCATAAACCCAATCAAACGCCTAGCATTCGGAAGCATCTTTGCAGGATTTGTCATCTCATATAATATTCCACCAACCAGCATTCCAGTCC------TCACAATACCATGATTT-TTAAAAACCACAGCCCTAATTATTTCAGTATTAGGATTCC
1002 s canFam1.chrM 13058 213 + 16727 TTCTTTGCTCTACTAGGCCAGCCCCGCTTCTCCCCTATAATCCTTA---TCAACGAGAATAATCC-TCTCCTAATTAACTCTATTAAACGACTCCTTATCGGAAGTGTATTTGCAGGGTATATTATCTCCCACAGCATCACACCCACTACCATCCCA----CAGA--TAACTATGCCTCATTAT-CTAAAAATGACAGCCCTTGCAGTAACCACCTTGGG-TTTC
1003 s galGal2.chrM 14351 214 + 16775 TTACTAGTCCAAACAGGACACACACGAACCCCCAGCAATCACCCCA---TTAACGAAAACACCCC-CCCAGCCATTCTCCCAATCATACGACTAGCCCTTGGCAGCATTATAGCAGGCCTATTAATCTCATCCCTAATCCTCCCCCCTAAAACCCCT----CCAA--TAACTATACCCACCATC-ACAAAAACTGCTGCCATCATTGTTACAACCCTAGGAATTA
1004 s fr1.chrUn 320903859 214 + 349519338 --CTTCGTATCCATAGGCCACCCTCGCTTTAATTCCCTTTCACCAA---TCAATGAAAATAACCCATGCTGTAATTAAACCTATCAAACGACTGGCATGAGGCAGCATTATTGCTGGCCTATTAATCACCACACAACTTCTCCCAACAAAAACACCC----GTAA--TATCAATACCTATAGTTGTTAACACTTACTGCTCTTATCGTCACAATCTTAGGACTCC
1005 s danRer1.chrM 14180 211 + 16596 TACTTAGTCTGTTTAGGAAGCCCCCGACACAAGACCTACGAGACAA---TTGATGAAAA---CCA-CATTCCAACCAATACTATTCAACGGCTTGCCTGAGGAAGCATTATTGCAGGATTAATCATCTCATACACTATAATTCCTCTTAAAACACCC----ATTT--TAACCATGCCTATTTAT-CTAAAATTGGCAGCCATTCTAGTAACTCTACTAGGTATTA
1006
1007 a score=7350.0
1008 s hg17.chrM 13832 25 + 16571 TAACAGCCCTAGACCTCAAC--TACCT
1009 s mm5.chrM 13236 25 + 16299 TAATCGCACTAGAACTAAAC--AACCT
1010 s canFam1.chrM 13272 27 + 16727 TCCTGGCACTAGAACTAAACCTTACCT
1011 s galGal2.chrM 14565 25 + 16775 TCCTAGCCCTAGAACTCTCA--AGCCT
1012 s fr1.chrUn 320904073 25 + 349519338 TAATTGCCCTAGAATTAGCT--TCCTT
1013 s danRer1.chrM 14391 25 + 16596 TCTTAGGACTAGAAATTAGT--ACGCT
1014
1015 a score=-9799.0
1016 s hg17.chrM 13857 292 + 16571 AACCAACAAACTTAAAATAAAATCCCCACT---ATGCACATTTTATTTCTCCAAC-ATACTCGGATTCTACCCTAGCATC-ACA---CACCGCACAATCCCCTATCTAGGCCTTCTTACGAGCCAAAACCTGCCCCTACTCCTCCTAGACCTAACCTGACTAGAAAAG-CTATTACCTAAAACAATTTCACAGCACCAAATCTC---CACCT---------------CC---ATCATCACCTCAACCCA---AAAAGGCATAATTAAACTTTACTTCCTCTCTTTCTTCTTCCCACTCATCCT-----------------AACCCTACTCCTAATC-------------ACATAA
1017 s panTro1.chr3 35475565 287 - 209662276 AACTAATAACCTTAAACCAAAATACCCATT---ACAGACATTCAACTTCTCCAAC-ATACTAGGATTTTATTC----ATCCACAATTCACCATACAACCCTCCACTCAGGCCTATACACAAGCCAAAATCTGGCTTCACTTCTACTAGACCTAATATGACTAGAAAAGTCTAT-ACCAAAGACCATTACACAAC-CCAAATTTC---AGCCT---------------CC---ATTACCATATCTACTCA---GAACGGCCTAATTAAACTCTACTT----TCTTTTTTTATCCCATCCCTTCT-----------------AACTCTGCTCCTAATT-------------ATCTAA
1018 s mm5.chrM 13261 286 + 16299 AACCATAAAACTATCAATAAATAAAGCAA----ATCCATATTCATCCTTCTCAACTTTACTGGGGTTTTTCCC----ATCTATTATTCACCGCATTACACCCATAAAATCTCTCAACCTAAGCCTAAAAACATCCCTAACTCTCCTAGACTTGATCTGGTTAGAAAAAACCAT-CCCAAAATCCACCTCAACTCTTCACACAAA---CATAA---------------CC---ACTTTAACAACCAACCA---AAAAGGCTTAATTAAATTGTACTTTATATCATTCCTAATTAACATCATCTT-----------------AATTATTATCTTA-------------------TAC
1019 s canFam1.chrM 13299 282 + 16727 --CACAAGGACTCAAATTTAACTATCCTTC---TAATTACTTTAAATTCTCCAGC-CTCCTTGGCTACTATCC----AACCATTATGCACCGCCTCACACCTAAAACAAGTTTAACCATTAGCCAGAAATCAGCATCTATACTTCTGGACTCCATCTGACTAGAAAACATCCT-ACCCAAATCAATCTCATATTTCCAAATAAA---ATCTT---------------CT---ACCCTTATTTCAAATCA---AAAAGGTCTCATCAAACTCTATTTCCTATCGTTCATACTAACTATAATCCT-----------------CAGTCTACTAA---------------------TCC
1020 s galGal2.chrM 14598 290 + 16775 CCCTCACTCCCCCAAAACACAATCCCCTC-----------ATAAACTTCTCCTCC-TCCCTAGGCTACTTTAA----CCCCCTAACTCACCGAATTAGCCCCTCAATCCTCCTACATACCGGACAAAAAATTGCATCCCACTTAATCGACATAGCATGGTACAAAAAAATAGG-CCCCGAAGGCCTTGCCAACCTTCATCTCAC---CATAA---------------CCAAAATCTCAACCACACTCCA---CACAGGCCTAATTAAATCTTACCTGGGTTCCTTCGCCCTCACAATCCTTAC-----------------AACGATCCTACTTATC----------CAAAAATAA
1021 s fr1.chrUn 320904101 298 + 349519338 CTCCAAACAACTTAAACCTACACCACACCT---GTCCCCCCACCACTTCTCAAAC-ATACTTGGCTTCTTCCC----AACAATTGTACACCGTGCCTCTCCTAAAATTAATCTCATTTTAGGACAAACAATTGCTACCCAAATTATTGACCTAACCTGACTAGAAAAAGTTGG-ACCCAAAACAATTTCATCTATCAATACTCCCCTCATCT---------------CT---ACCATTAGTAACATCCA---ACAAGGATCAATCAAGACATACCTTGTCCTCTTCCTCACGACCCTTGCTCT-----------------ATCAACCCTCGTTCTT----------CTTACCTAA
1022 s danRer1.chrM 14416 322 + 16596 AGCTAATAAAATTAACAAAAACACTACCCCAGGAATTCCATTCCACTTTTCAATT-TCACTAATCTTCTTTCC----A---ATCCTTCACCGACTAATCCCTATACGAAAATTATTTATAGGGGAGTCAGCAGCC------------------ACTAAAATTGAAAAATCATG-AAGCGAACTATTCGGACCATGCGGAATTGC---ATTTACATTAATAACAGTGGCC---ACCTTTGTTAAGGACCATCGAATAGCGTCAATCAAGTCTTACCTAGCCGTCTTCCTTACCTCTATTATTCTTAAAATAATAATACTGAAACTATACACTTAAATAGCACGAAGCACACCATAA
1023
1024 a score=0.0
1025 s hg17.chrM 14149 1 + 16571 C
1026
1027 a score=180.0
1028 s hg17.chrM 14149 1 + 16571 C
1029 s panTro1.chr3 35475852 1 - 209662276 T
1030 s mm5.chrM 13547 1 + 16299 T
1031 s canFam1.chrM 13581 1 + 16727 T
1032
1033 a score=10579.0
1034 s hg17.chrM 14150 50 + 16571 CTATT--------CCCCCGA-GCAATCTCAATTACAATATATACACCAACAAACAATGT
1035 s panTro1.chr3 35475853 50 - 209662276 CTATT--------ATCCTGA-GTAATTTCAATCACAACATAAATACCAATAAATAATCA
1036 s mm5.chrM 13548 51 + 16299 CAATT-------AATCTCGA-GTAATCTCGATAATAATAAAAATACCCGCAAACAAAGA
1037 s canFam1.chrM 13582 50 + 16727 TAATT--------ACCACGG-GTAACTTCCATGATAACCAACACACCAATTAATAATGA
1038 s fr1.chrUn 320904399 58 + 349519338 CTGCTCGAAGAGCCCCCCGACCCAACCCCCGCACCAGCTCTAATACT-ACAAGCAACGT
1039 s danRer1.chrM 14738 50 + 16596 CTAAG--------ACCTCGA-GTAACCTCTAGTACAACAAACAAAGTCAGAAGCAATAC
1040
1041 a score=2145.0
1042 s hg17.chrM 14200 5 + 16571 TCAAC
1043 s panTro1.chr3 35475903 5 - 209662276 TCAAC
1044 s mm5.chrM 13599 5 + 16299 TCACC
1045 s canFam1.chrM 13632 5 + 16727 TCAGC
1046 s danRer1.chrM 14788 5 + 16596 CCAAG
1047
1048 a score=126.0
1049 s hg17.chrM 14200 5 + 16571 TCAAC
1050 s danRer1.chrM 14788 5 + 16596 CCAAG
1051
1052 a score=2043.0
1053 s hg17.chrM 14205 148 + 16571 CAGTAACCACTACTAATCAACGCCCATAATCATACAAAGC--CCCCGCACCAATAGGATCCTCCCGAATCAACCCTGACCCCTCTCCTTCATAAATTATTCAGCTTCCTACACTATTAAAGTTTACCACAACCACCACCCCATCATACTC
1054 s panTro1.chr3 35475908 148 - 209662276 CAGCAACTACCACTAATCAGCATCCATAACTGTACAAGGCAGCCACACAC--ACAGAATCTTCACGCAACAACCCTGCCCCCTCACCCTCAAAAATCGTCCAGCTCTTTATGCTATTAAAATTAATCATGATCCTCACTGCATCATGCTC
1055 s mm5.chrM 13604 145 + 16299 CAGCTACTACCATCATTCAAGTAGCACAACTATATATTGC--CGCTACCCCAATCCCTCCTTCCAACATAACTCCAACATCATCAACCTCATACATCAACCAATCTCCCAAACCATCAAGATTAATT---ACTCCAACTTCATCATAATA
1056 s rn3.chr8 86333738 140 - 129061546 CAGCCACCATGGTCAACCAAGTCTCACAACTGCATATAGA--TGCTACCCTAGCTGCTTCTCTGTCTAGTCACCCAATCTCATCTCTCTCATAAA--------CACCCCATGTTTTTAAGTTCTACCACCACCCCCACCCCACAGTAACA
1057 s canFam1.chrM 13637 146 + 16727 CTGTAACAACCACCAACCAAGTCCCATAACTGTACAGAGC--CGCAATACCCATAGCCTCTTCACTAAAAAACCCAGAGTCCCCCGTATCATAGATCACTCAATCCCCTATTCCATTAAACTTTAATACTACCTCCACCTCGTCATCC--
1058 s fr1.chrUn 320904457 128 + 349519338 CAATAACAA-----GACCCAGGCCCCCAATAGT--AATAC--TCCCCCACCGCTAGAATATATAAGTGAAACCCCGTCCATATCACCTCGAAAAACTGCATCTCAGTCTATCTCTCCAGAA---------ACC----CCTCATCACACCT
1059 s danRer1.chrM 14793 132 + 16596 CACAAATCACTAATATTTTTCCACCTGACGAATATATTAT--TGCAACCCCGCTTACATCAGCTCGAATAACAGAAAACTCTTTAAAAGCATCAA-----------CCGATATTAATAA-----ACCAGTGTCACCAGTTAATAAAAACC
1060
1061 a score=-17437.0
1062 s hg17.chrM 14353 57 + 16571 TTTCACCCACAGCACCAATCC--TACCTCCATCG--CTAACCCC---ACTAAAACAC---TCACCAA
1063 s mm5.chrM 13752 54 + 16299 AAGCACACAAATTAAAAA-----AACCTCTATAA--TCACCCCCAATACTAAAAAAC------CCAA
1064 s rn3.chr8 86333883 54 - 129061546 TTGTGTATACAGCCCC-------CAACTCCAGAAATATAACCCTAACAACAAACTAC------CTAA
1065 s canFam1.chrM 13783 59 + 16727 TTCAAAATATAGCAAGCAGTCAACAATTCAGACA--ACAAACC-AGTAATAAAAGCC-----GCTAG
1066 s fr1.chrUn 320904585 57 + 349519338 ------CTTCATCAAGGACCA--TATTTGTGTAC--AAGATACCAAAAACAAAAAAAAAATATCCAA
1067 s danRer1.chrM 14925 52 + 16596 ---CAGCCGCCACAATTA-----CAACCAGACCA--TAAACCATAACACGTCAAAAC-----ACCAC
1068
1069 a score=31182.0
1070 s hg17.chrM 14410 85 + 16571 GACCTCAACC--CCTGACCCCCA--TGCCTCAGGATACTCCTCAATAGCCATCGCTGTAGTATATCCAAAGACAACCATCATTCCCCCT
1071 s panTro1.chr3 35476113 85 - 209662276 GATATCAATA--CTTGACCCTTA--TGTTTCAGGATACTCCTCAGCAGCCATCACCGTGGTATAGCCATAAACAATCATCATACCACAC
1072 s mm5.chrM 13806 85 + 16299 --AATTAATCAGTTAGATCCCCA--AGTCTCTGGATATTCCTCAGTAGCTATAGCAGTCGTATATCCAAACACAACCAACATCCCCCCT
1073 s rn3.chr8 86333939 75 - 129061546 TAATTCAATG----AGAACATCA--AGTCTCGGGTTACTTCTCCAAAGCAGT--------TATAATTGAACACAACTAGCATACCACTG
1074 s canFam1.chrM 13842 85 + 16727 AACAGCCTTA--TTTGAAACTCA--CACCTCAGGGTATTGCTCAGTAGCCATAGCAGTTGTATAACCAAATACTACTAATATACCCCCC
1075 s fr1.chrUn 320904650 87 + 349519338 AAAACCACCT--GTCAACCTGTAGGCGCCTTAGGATCCTTATCTGCAGACAGCGCTGACGAATAAATAAACACAACCAGTATGCCCCCC
1076 s danRer1.chrM 14977 76 + 16596 -----------ACGGTCACCCCA--CGCTTCAGGAAAAGGCTCGGCTGCTAGGGCCGCTGAATAAGCAAACACTACAAGCATCCCACCT
1077
1078 a score=35925.0
1079 s hg17.chrM 14495 109 + 16571 AAATA---AATTAAAAAAACTATTAAACCCATATAA-CCTCCCC----CAAAATTCAGAATAATAACACACCCGACC----ACACCGCTAA------CAATCAGTACTAA-AC------CCCCATAAATAGGAG
1080 s panTro1.chr3 35476198 107 - 209662276 AAATGGGGAATTAAAAAAAC-ATCAACCCCATGAAA-GCACCAC----CAAAATTCA--------ACAAATTCAACCCACAGCACCACTAA------TAATTAGCCCTAG-AC------CTCCGTAAATAGGAG
1081 s mm5.chrM 13891 109 + 16299 AAATA---AATTAAAAAAACTATTAAACCTAAAAAC-GATCCAC----CAAACCCTAAAACCATTAAACAACCAACA----AACCCACTAA------CAATTAAACCTAA-AC------CTCCATAAATAGGTG
1082 s rn3.chr8 86334585 111 - 129061546 AACTA---CATTAGAAATGCAATTAATCCTAAAAGGTAACCCAG----AAAAATTTATGGCAACTAAATAACACATA----CACCCAGTAA------TACTTAAATCTTGTGT------GCCCATAAATAAGAG
1083 s canFam1.chrM 13927 109 + 16727 AAATA---AATTAAAAATACTATCAACCCTAAAAAA-GAACCCC----CAAAATTCAGAACAATCGCACAACCAATC----CCACCGCTAA------TAATTAGCACAAG-CC------CACCATAAATAGGAG
1084 s fr1.chrUn 320904737 109 + 349519338 ATATA---AATCATTAACAACACCAAAGACAAGAAA-GTCCCCCCGTGCAAAACTGA----------------AGCC----CCACAGCAAAGAAGTGCAACCAGCACCAA-ATTGAAAACTCCATAAAAAGGAG
1085 s danRer1.chrM 15053 109 + 16596 AAATA---AATCAAAAAAAGAATTAGAGACAAAAAT-GAACCCC----CATAACTAACTAAAATTCCACATCCAACC----CCTGCCACAA------CTACTAAACCAAA-TG------CAGCAAAATAAGGAG
1086
1087 a score=75856.0
1088 s hg17.chrM 14604 139 + 16571 AAGGCTTAGAAGAAAACCCCACAAACCCCATTACTAAACCCACACTCAACAGAAACAAA------GCATACA---TCATTATTCTCGCACGGACTACAACCACGACCAATGATATGAAAAACCATCGT--TGTATTTCAACTACAAGAAC
1089 s panTro1.chr3 35476305 139 - 209662276 AAGATTTCAAAGAGAAACCTACAAATCCTATAACCAAAGTGACACTTAATAAAAATATA------GTATATG---CCATTATTCCCACATGGACTATAATCATGACTAATGACATGAAAAATCATTGT--AGTATTTCAACTATAAGAAG
1090 s mm5.chrM 14000 139 + 16299 AAGGCTTTAATGCTAACCCAAGACAACCAACCAAAAATAATGAACTTAAAACAAAAATA------TAATTAT---TCATTATTTCTACACAGCATTCAACTGCGACCAATGACATGAAAAATCATCGT--TGTAATTCAACTACAGAAAC
1091 s rn3.chr2 24398790 122 - 258222147 AGGGGTTTGAAGAACATCCTACCAAACCT--------------ACTTAATGTA-----A------GAGTATT---TCATAATTTCCACATAGACTGTAACTGGGAATAATGACACAAAACATCACCACTGTGTACTTTGCCTGTTAGAAT
1092 s canFam1.chrM 14036 142 + 16727 ATGGTTTAGTGGCAAAACCCACAAAACTCATCACAAAAACGATACTTAAAATAAATACA------ATGTATGTTATCATTATTCCTACATGGAATTTAACCATGACTAATGACATGAAAAATCATCGT--TGTATTTCAACTATAAGAAC
1093 s fr1.chrUn 320904846 139 + 349519338 CAGGATTTGTAGACAACACAA------TTATCACAACCAACATCCCTAATAAAAGAAAAACAAGCGCATAAA---ACATAGTTTCTGCCAGGATTTTAACCAGGACCTATGGCGTGAAAAACCATCGT--TGTTACTCAACTACAAAAAC
1094 s danRer1.chrM 15162 139 + 16596 CCGGATTAGAAGCAATAGCAATCATACCCCCAACTAGAGCTGCCATCAAAAAAGACAAA------TAAAATG---CCATAATTCTTACTCAGACTTTAACTGAGACCGGTGACTCGAAAAACCACTGT--TGTAGTTCAACTACAAGAAC
1095
1096 a score=846407.0
1097 s hg17.chrM 14743 837 + 16571 --ACC-AATGACC-CCAATAC--GCAAAATTAACCCCCTAATAAAA----TTAATTAACCACTCATTCATCGACCTCCCCACCCCATCCAACATCTCCGCATGATGAAACTTCGGCTCACTCCT-TGGCGCCTGCCTGATCCTCCAAATCACC-------ACAGGACTATTCCTAGCCATACACTACTCACCAGACGCCTCAACCGCCTTTTCATCAATCGCCCACATCACTCGAGACGTAAATTATGGCTGAATCATCCGCTACCTTCACGCCAATGGCGCCTCAATATTCTTTATCTGCCTCTTCCTACACATCGGGCGAGGCCTATATTACGGATCATTT------CTCTACTCAGAAACCTG-----AAACATCGGCATTATCCTCCTGCTTGCAACTATAGCAACAGCCTTCATAGGCTATGTCCTCCCGTGAGGCCAAATATCATTCTGAGGGGCCACAGTAATTACAAACTTACTATCCGCCATCCCATACATTGGGACAGACCTAGTTCAATGAA----TCTGAGGAGGCTACTCAGTAGACAGTCCCACCCTCACACGATTCTTTACCTTTCACTTCATCTTACCCTTCATTATTGCAGCCCTAGCAGCACTCCACCTCCTATTCTTGCACGAAACGGGATCAAACAACCCCCTAGGA-----ATCA---CCTCCCATTCCGATAAAATCACCTTCCACCCTTACTACACAATCAA----------AGACGCCCTCGGCTTACTTCTCTTCCTTCTCTCCTTAATGACATTAACACTATTCTCACCAGACCTCCTAGGCGACCCAGACAATTATACCCTAGCCAACCCCTTAAACACCCCTCCCCACATCAAGCCCGAATGATATTTCCTATTCGCCTA
1098 s panTro1.chr3 35476444 837 - 209662276 --GCT-AATGGCC---AATATCTGTAAAACACACCCGCTAATAAAAACTATTAATTA--------TTCATTGATCTTCCCATATCATCTAACCTTTCTATATCATGAAACCTTGGCTCACTTTT-TGGTGCCTGCCTAACCCTCCAAATC--CTTACAGGACAGGACTGCTTTTGGCCATGCACTACACATCAAACACCTCAACTGCCTTCTCTTCAGTCGCTCATATCAGCCAACATGTAAACTTCGGCTGAATGGTTCGCTATTTTCATGCTAATGGCAGTTCAATATTTTTTATCTGCCTCTTCTTACACATTGGCTGAGGTTTATACTATGGATCATTTACATTCCT------AGAAACCTG-----AAATATTGGCATCATCCTCCTACTCAAAACAATGGCAACAGCACTCATAGGCTACATGCTCCCATGAGGCCAGATATCATACTGAGGTGCTACAGTAATTACAAATCTACTATCAGCCATCCCATATATTGGAACTGACCTTGTGCAATAAA----TCTGAGGTGGGTTCTCAGTCGACAAAGCCACCCTTACATGATTCTTCACTTTCCATTTCATCTTA-CCTTCATCATTACAGCCCTAGCAGCTGTTCACCTTTTATTCCTACATGAAACAGGATCTAATAACCCTTCAGGGTTTTCATCAGACCCT--------GACAACATTACCTTCCACCCCTACCATACTACCAA----------AGATATTTTAGGTTTAATTTTTCTCCTCCTCCTCCTAATAATTCTAGTACTATTTTCACCTGACTTCCTGGGCGACCCAGATAACTATGCATTAGCCAGCCCCCTCAACACCCCATCCCACATTAAGCCAGAGTGGTACTTTTTGTTTGCCTA
1099 s mm5.chrM 14139 838 + 16299 --ACCTAATGACA---AACATACGAAAAACACACCCATTATTTAAA----ATTATTAACCACTCATTCATTGACCTACCTGCCCCATCCAACATTTCATCATGATGAAACTTTGGGTCCCTTCT-AGGAGTCTGCCTAATAGTCCAAATCATT-------ACAGGTCTTTTCTTAGCCATACACTACACATCAGATACAATAACAGCCTTTTCATCAGTAACACACATTTGTCGAGACGTAAATTACGGGTGACTAATCCGATATATACACGCAAACGGAGCCTCAATATTTTTTATTTGCTTATTCCTTCATGTCGGACGAGGCTTATATTATGGATCATATACATTTAT------AGAAACCTG-----AAACATTGGAGTACTTCTACTGTTCGCAGTCATAGCCACAGCATTTATAGGCTACGTCCTTCCATGAGGACAAATATCATTCTGAGGTGCCACAGTTATTACAAACCTCCTATCAGCCATCCCATATATTGGAACAACCCTAGTCGAATGAA----TTTGAGGGGGCTTCTCAGTAGACAAAGCCACCTTGACCCGATTCTTCGCTTTCCACTTCATCTTACCATTTATTATCGCGGCCCTAGCAATCGTTCACCTCCTCTTCCTCCACGAAACAGGATCAAACAACCCAACAGGATTAAACTCAGATGCA--------GATAAAATTCCATTTCACCCCTACTATACAATCAA----------AGATATCCTAGGTATCCTAATCATATTCTTAATTCTCATAACCCTAGTATTATTTTTCCCAGACATACTAGGAGACCCAGACAACTACATACCAGCTAATCCACTAAACACCCCACCCCATATTAAACCCGAATGATATTTCCTATTTGCATA
1100 s rn3.chr2 24398912 776 - 258222147 --ATG-AACAACC---GATACTCCAAAATTCCACTTTTTAACAAAA----ATTAACAATCATTTGTTCATTGATCTACCAGACTGGTAAAACATTTCCGCATGATGAGAGCCTGGATCTGTGGTGGGGAATCTGCCAGGCTCTC----------------A---------TCATAGCCCAGGACTATCCATCACATATAATAATGGCACTCTCTT-----ACCCAAATTTGTCAAGTTGCA----------------TCAGCTGTTTCTATGTGAATAGAACACAAACATTCTTTACCTGCCTGTTAATCCATGAAAGTTGAAGGTCA---TGTGAATTGCATGTTTTTCT------ATAAATCTGGTTAAAAACACTAGGATTTGCTTATTACTCCC--TGATAGCTACAGCATATCTGGCCCATATGTTATTGTAAGGACAAATGGCTTTCTGAGTTCCAACAGTAGTCACAAACTCACTGGCAATGATTCCACATATC---ATTTCACTAATTTTATAGAGTGTTCTGTGGTGGGCA-TGAGATGACAGAAT--GCCTCACTTGTTTTCTCATCATAAAATTTATTTTTTTATTCAT--------CCCTAGTTATTCTG-GTCCCCTGTCTCTCTGTGAGACAAGATACAGGAATCCAC--AGAGTCTCATTTGACTGG--------GGCAAAATCCTGGATCATTTTTGGTGTATAATTAAGCTATCTGGGATGTCTTCTAGGTTTGCTTGTAGTAC-----------------CCAGTGCTATTCTCCTCCAACTTCTTATGATACAGAGACAATCCCATACCAGACAACCCACTTGATATCTTATCTCA-ATCAAGTCAAATAGAAACTT--TGTCTGCCTA
1101 s canFam1.chrM 14178 837 + 16727 --ATT-AATGACC---AACATTCGAAAAACCCACCCACTAGCCAAA----ATTGTTAATAACTCATTCATTGACCTCCCAGCGCCGTCTAACATCTCTGCTTGATGGAACTTCGGATCCTTACT-AGGAGTATGCTTGATTCTACAGATTCTA-------ACAGGTTTATTCTTAGCTATGCACTATACATCGGACACAGCCACAGCTTTTTCATCAGTCACCCACATCTGCCGAGACGTTAACTACGGCTGAATTATCCGCTATATGCACGCAAATGGCGCTTCCATATTCTTTATCTGCCTATTCCTACATGTAGGACGAGGCCTATATTACGGATCCTATGTATTCAT------AGAAACATG-----AAACATTGGAATTGTACTATTATTCGCAACCATAGCCACAGCATTCATGGGCTATGTACTACCATGAGGACAAATATCATTTTGAGGAGCAACTGTAATCACTAATCTTCTCTCTGCCATCCCTTATATCGGAACTGACTTAGTAGAATGGA----TCTGAGGCGGCTTCTCAGTGGACAAAGCAACCCTAACACGATTCTTTGCATTCCATTTCATCCTCCCTTTCATCATCGCAGCTCTAGCAATAGTACACCTCCTATTTCTACACGAAACCGGATCCAACAACCCTTCAGGAATCACATCAGACTCA--------GACAAAATTCCATTTCACCCTTACTACACAATCAA----------GGATATCCTAGGAGCCTTACTCCTACTCCTAATCCTAATATCACTAGTTTTATTTTCACCTGACCTATTAGGAGACCCAGATAACTACACCCCTGCAAACCCCCTAAACACCCCTCCACATATTAAACCTGAGTGATATTTTCTATTCGCCTA
1102 s galGal2.chrM 14888 840 + 16775 --ACT-AATGGCACCCAACATTCGAAAATCCCACCCCCTACTAAAA----ATAATTAACAACTCCCTAATCGACCTCCCAGCCCCATCCAACATCTCTGCTTGATGAAATTTCGGCTCCCTATT-AGCAGTCTGCCTCATGACCCAAATCCTC-------ACCGGCCTACTACTAGCCATGCACTACACAGCAGACACATCCCTAGCCTTCTCCTCCGTAGCCCACACTTGCCGGAACGTACAATACGGCTGACTCATCCGGAATCTCCACGCAAACGGCGCCTCATTCTTCTTCATCTGTATCTTCCTTCACATCGGACGAGGCCTATACTACGGCTCCTACCTCTACAA------GGAAACCTG-----AAACACAGGAGTAATCCTCCTCCTCACACTCATAGCCACCGCCTTTGTGGGCTATGTTCTCCCATGGGGCCAAATATCATTCTGAGGGGCCACCGTTATCACAAACCTATTCTCAGCAATTCCCTACATTGGACACACCCTAGTAGAGTGAG----CCTGAGGGGGATTTTCAGTCGACAACCCAACCCTTACCCGATTCTTCGCTTTACACTTCCTCCTCCCCTTTGCAATCGCAGGTATTACTATCATCCACCTCACCTTCCTACACGAATCAGGCTCAAACAACCCCCTAGGCATCTCATCCGACTCT--------GACAAAATTCCATTTCACCCATACTACTCCTTCAA----------AGACATTCTGGGCTTAACTCTCATACTCACCCCATTCCTAACACTAGCCCTATTCTCCCCCAACCTCCTAGGAGACCCAGAAAACTTCACCCCAGCAAACCCACTAGTAACCCCCCCACATATCAAACCAGAATGATATTTTCTATTCGCCTA
1103 s fr1.chrUn 320904985 837 + 349519338 --ACT-AATGGCC---AGCCTACGCAAAACCCACCCCCTACTAAAA----ATCGTAAACGACATAGTAATTGACCTTCCTACCCCCTCAAACATTTCCGCCTGATGAAACTTTGGCTCTCTACT-CGGATTATGCCTTATTACACAAATCATC-------ACAGGACTGTTCCTTGCAATACACTACACATCCGACATCTCTACCGCCTTTTCATCCGTAGCCCACATTTGCCGAGACGTAAACTACGGCTGACTAATTCGCAATCTACACGCAAACGGTGCCTCATTCTTTTTTATTTGCTTATACTCCCACATCGGCCGAGGTCTTTACTATGGCTCTTACCTAAGTAA------AGAAACCTG-----AAACGTAGGGGTAGTCCTCTTACTTTTAGTAATGGCCACCGCTTTCGTAGGCTACGTTCTCCCATGAGGACAAATATCCTTCTGAGGCGCCACTGTAATTACAAACCTGCTCTCTGCTGTCCCCTACGTAGGAAACACGCTCGTTCAATGAG----TATGAGGAGGCTTTTCAGTAGACAGCGCCACTCTAACACGATTCTTTGCCTTCCACTTCCTCCTCCCATTTATCGTTGCAGCCGCTGCCATCGTACATCTTATTTTTCTTCACGAAACAGGCTCCAACAATCCCCTAGGACTTAATTCAAACGCA--------GACAAAATCCCATTCCACCCATACTTCTCTTACAA----------AGACCTCCTGGGCTTCACAATCATGCTCTCAGCCCTCGCAACACTCGCCCTATTCTCTCCAAACTACCTCGGAGACCCTGACAACTTCACACCAGCCAACCCTCTAGTTACCCCCGCCCACATTAAACCAGAATGGTATTTCCTATTTGCATA
1104 s danRer1.chrM 15301 839 + 16596 TGCTT-AATGACA---AGCCTGCGAAAAACACACCCAGTTTTAAAA----ATCGCTAATGACGCATTAGTTGATTTGCCAACGCCACTAAATATTTCAGCGTGATGAAATTTTGGATCTCTCCT-TGGATTATGTCTTATTACACAAATTTTA-------ACAGGACTATTTTTAGCAATACACTACACCTCAGACATCTCAACAGCATTTTCATCTGTTGTGCATATTTGCCGAGATGTAAATTTCGGCTGACTTATTCGGAGCATCCATGCCAATGGGGCTTCCTTCTTCTTCATCTGCCTGTATATTCACATCGCCCGAGGACTATATTACGGATCTTATCTTTATAA------TGAAACTTG-----AAACATCGGAGTAGTCCTGTTCTTACTTGTAATAATAACAGCTTTTGTGGGCTACGTCCTTCCATGGGGCCAAATATCATTCTGAGGGGCCACAGTAATTACTAACCTATTATCGGCCGTTCCTTACGTGGGAGATACCCTAGTGCAATGAA----TCTGAGGGGGATTCTCAGTAGACAATGCAACCCTTACACGATTCTTCGCATTCCACTTTTTATTACCATTTATTATCATCGCCATAGTTATTCTACACTTGCTATTTCTCCACGAAACCGGATCAAATAACCCCCTTGGCCTAAACCCCAACATG--------GATAAAATCCCCTTTCATCCTTATTTTTCAAATAA----------AGACCTCCTTGGTTTTGTAATTATATTATTTTCCCTCTCACTATTAGCACTATTCTCACCAAACCTCTTAGGAGATCCAGAAAATTTCACCCCTGCTAACCCTCTAGTAACACCTCCTCACATTAAACCAGAATGATATTTCCTATTCGCATA
1105
1106 a score=109405.0
1107 s hg17.chrM 15580 134 + 16571 CACAATTCTCCGATCCGTCCCTAACAAACTAGGAGGCGTCCTTGCCCTATTACTATCCATC----CTCATCCTAGCAATAATCCCCATCCTCCATATATCCAAACAACAAAGCATAATATTTCGCCCACTAAGCCAAT
1108 s panTro1.chr18 72834051 133 - 83875239 TGCAATTCTACGATCCATCCCTAACAAACCAGGAGGTGTACTAGCCC--TTA-TATCC-TCCTTTCTCATTCCAGCAATTAT-CCCATACTTCATACGTCTAAACAATAAAGCATAATATTCTGTCCATTAAGTCAAT
1109 s mm5.chrM 14977 134 + 16299 CGCCATTCTACGCTCAATCCCCAATAAACTAGGAGGTGTCCTAGCCTTAATCTTATCTATC----CTAATTTTAGCCCTAATACCTTTCCTTCATACCTCAAAGCAACGAAGCCTAATATTCCGCCCAATCACACAAA
1110 s rn3.chr2 24399688 92 - 258222147 ----------------------TGCAAACT-----------TGGCCCCACAG-------TT----TTAATCTTAACTACAGC-TGAGTAGTTCCTGTAGCTAAA-AATGAAGCACAGTATTCTGACCCTTTGACCCTT
1111 s canFam1.chrM 15015 134 + 16727 TGCTATCCTACGATCCATTCCTAATAAATTAGGAGGTGTACTCGCCCTAGTATTCTCCATC----CTAATCTTGGCATTCATTCCACTCCTCCACACATCTAAGCAACGCAGCATAATATTCCGGCCCCTTAGCCAAT
1112 s galGal2.chrM 15728 134 + 16775 TGCCATCCTACGCTCCATCCCCAACAAACTTGGAGGTGTACTAGCCCTAGCAGCCTCAGTC----CTCATCCTCTTCCTAATCCCCTTCCTCCACAAATCTAAACAACGAACAATAACCTTCCGACCACTCTCCCAAA
1113 s fr1.chrUn 320905822 134 + 349519338 CGCAATTCTACGGTCTATCCCCAATAAACTAGGAGGAGTCCTGGCCCTTCTTGCCTCAATC----TTAATTCTTATAGTAGTTCCTTTCTTACACACCTCTAAACAACGAAGCCTAACATTCCGCCCACTATCACAAT
1114 s danRer1.chrM 16140 134 + 16596 CGCCATTCTACGATCTATCCCAAACAAACTAGGAGGTGTACTAGCTCTCTTATTTTCCATT----TTAGTATTAATAGTAGTACCAATTTTACACACTTCTAAACAGCGAGGAATAGCATTCCGCCCAGTTACCCAAT
1115
1116 a score=123010.0
1117 s hg17.chrM 15714 141 + 16571 CACTTTATTGACTCCTAGCCGCAGACC----TCCTCATTCTAACCTGAATCGGAGGACAACCAGTAAGCTACCCTTTTACCATCATTGGACAAGTAGCATCCGTACTATACTTCACAACAATCCT--AATCCTAATACCAACT-----ATCT
1118 s panTro1.chr11 95342837 135 - 123086034 CACTTTATTGATTCCTAGCCGCAGACC----TCCTCGCCCTAACCTGAATCGGAGGACAACCAGTAAGCTATCCCTTCACCATCATCGGACAAGTAGCCTCCGTACTATACTTCACAAC--------AATTCTAATACCAGCC-----ACCT
1119 s mm5.chrM 15111 138 + 16299 TTTTGTACTGAATCCTAGTAGCCAACC----TACTTATCTTAACCTGAATTGGGGGCCAACCAGTAGAACACCCATTTATTATCATTGGCCAACTAGCCTCCATCTCATACTTCTCAATCATCTT--AATTCTTATACCA--------ATCT
1120 s rn3.chr2 24399786 141 - 258222147 ACTTATTTTAAATCCTAGTAGCTGACCCTCATGCTCATATGAATCTGAATTTTAAG---AGTAGTAA------CTTTTATTA--ATTTTATAAATATTATCCATCCTGTATATTCCCATGCTAATGCAATTTTTAAGCTTAATGGGGGAGCT
1121 s canFam1.chrM 15149 140 + 16727 GCCTATTCTGACTTTTAGTCGCCGATC----TTCTCACTTTAACATGAATTGGAGGACAACCAGTTGAGCACCCTTTCATCATTATCGGACAAGTCGCTTCAATCTTATATTTCACCATCTTATT--GATCCTAATACCAAC------AGTT
1122 s galGal2.chrM 15862 141 + 16775 CCCTATTCTGACTTCTAGTAGCCAACC----TTCTTATCCTAACCTGAATCGGAAGCCAACCAGTAGAACACCCCTTCATCATCATTGGCCAAATAGCATCCCTCTCTTACTTCACCATCCTACT--TATCCTCTTCCCCACA-----ATCG
1123 s fr1.chrUn 320905956 140 + 349519338 TCCTATTCTGAACCCTAATTGCCGACG----TCGTCATCCTAACCTGAATTGGAGGCATACCCGTCGAACATCCTTACATTATTATCGGACAAATTGCCTCAGTACTTTACTTCTCTCTCTTCCT--AATCTTGATGCCAAT------AGCC
1124 s danRer1.chrM 16274 141 + 16596 TTCTGTTCTGAACACTGGTAGCAGACA----TGCTTGTACTAACATGAATTGGAGGGATACCAGTAGAACACCCCTACATCATCATTGGACAAATAGCATCAATCTTATATTTTTCACTATTCTT--AGTCTTATTCCCAATT-----ACAG
1125
1126 a score=59534.0
1127 s hg17.chrM 15855 162 + 16571 CCCTAATTGAAAACAAAATACTCAA--ATGGGCC---TGTCCTTGTAGTATAAA-CTAATACACCAGTCTTGTAAA-CCGGAGA-CGAAAA--------CCTTTTTCCAAGGACAA----ATCAGAGAAAAAGTCTT--TAACTCCACCATTAGCACCCAAAGCTAAGATTCTAATTTAAACTA
1128 s panTro1.chr18 72834325 163 - 83875239 CCCTGATGGAAAATAAGCTATTTAA--ATTAAAC---TACCCTTGTAGTATAAT-TCAATACTCTGGTCTTGTAAA-CCAGAAA-TGGAGA----ATTCCC---TTCCCAGGACAA----CTCAGGCAAAAAGCCTTC-CCACTTCACCGTCAACACCCAAAACTGAAATTCTAA-TTAAACTA
1129 s mm5.chrM 15252 163 + 16299 GAATTATCGAAGACAAAATACTAAA--ATTATATCCATGTCTTGATAGTATAAA--CATTACTCTGGTCTTGTAAA-CCTGAAA-TGAAGAT---CTTCTC---TTCTCAAGACA------TCAAGAAGAAGGAGCT--ACTCCCCACCACCAGCACCCAAAGCTGGTATTCTAA-TTAAACTA
1130 s rn3.chr2 24399927 140 - 258222147 TCCTAAGTGAAG-------------------------AATTCTTGGAGCATATT-AAACTACTTTGGCTTTGGAAACCCCAAAA-TGGAGA----ACAGTT---CTCTCTAGAGTA----CTCAATCAAGATGCCAT-----TTCTTCCATCACTACCCAACACTGAAATTTTAT-ATGGAATA
1131 s canFam1.chrM 15290 160 + 16727 GCGTTATCGAAAACAACCTTCTAAA--ATGAAG----AGTCTTTGTAGTATAAT--CATTACCTTGGTCTTGTAAA-CCAAAAA-TGGAGAGTAACCGCCC---TCCCTAAGAC-------TCAAGGAAGAAGCTCT---TGCTCCACCATCAGCACCCAAAGCTGAGATTCTTC-TTAAACTA
1132 s galGal2.chrM 16003 167 + 16775 GAACACTAGAAAACAAAATACTCAACTACTAAAA---TACTCTAATAGTTTATG--AAAAACATTGGTCTTGTAAA-CCAAAAACTGAAGACT--CCACCC---TTCTTAGAGTA------TCAGAAAAGGAGGGCTCAAACCTCCATCTCCAGCTCCCAAAGCTGGTATTTTCAAATAAACTA
1133 s fr1.chrUn 320906097 166 + 349519338 GTTGACTAGAAAACAAAATACTAAA--CTAACA----AGCATTAGTAGCTCAGATTCAGAGCGTCGGTCTTGTAAA-CCGAATG-TCGGGGGTTAAAGTCC---CCCCTTATGC-------TCAAAAAGAAGGGACTTCAACCCCCACCACTGGCTCCCAAAGCCAGCATTCTTAATTAAACTA
1134 s danRer1.chrM 16415 174 + 16596 GGATTTTAGAGAATAAGGCACTCCA--ATGAAGC---TGCCCTAGTAGCTTAGTTTTAAAGCATCGGTCTTGTAAT-CCGAAGA-TCGGAGGTTAGACCCC---TCCCTAGCGCTAAATTACCAGAAAAGAGAGATTTTAACTCACACCCCTGACTCCCAAAGCCAGGATTCTAAATTAAACTA
1135
1136 a score=-1650.0
1137 s hg17.chrM 16017 3 + 16571 -TTC
1138 s panTro1.chr18 72834488 3 - 83875239 -TTC
1139 s rn3.chr2 24400068 2 - 258222147 -TT-
1140 s canFam1.chrM 15450 3 + 16727 -TTC
1141 s galGal2.chrM 16170 3 + 16775 -CTC
1142 s fr1.chrUn 320906264 2 + 349519338 -TT-
1143 s danRer1.chrM 16589 3 + 16596 TTT-
1144
1145 a score=4076.0
1146 s hg17.chrM 16017 7 + 16571 TTCTCTG
1147 s rn3.chr2 24400067 7 - 258222147 ATTTGTA
1148 s canFam1.chrM 15450 7 + 16727 TTCCCTG
1149 s galGal2.chrM 16170 7 + 16775 CTCTCTG
1150 s fr1.chrUn 320906263 7 + 349519338 CTTTTTG
1151 s danRer1.chrM 16589 7 + 16596 TTTTCTG
1152
1153 a score=4510.0
1154 s hg17.chrM 16020 4 + 16571 TCTG
1155 s panTro1.chr11 95343137 4 - 123086034 TCTG
1156 s rn3.chr2 24400070 4 - 258222147 TGTA
1157 s canFam1.chrM 15453 4 + 16727 CCTG
1158 s galGal2.chrM 16173 4 + 16775 TCTG
1159 s fr1.chrUn 320906266 4 + 349519338 TTTG
1160 s danRer1.chrM 16592 4 + 16596 TCTG
1161
1162 a score=-745.0
1163 s hg17.chrM 16024 2 + 16571 TT
1164 s panTro1.chr11 95343141 2 - 123086034 TT
1165 s rn3.chr2 24400074 2 - 258222147 TT
1166 s canFam1.chrM 15457 2 + 16727 AC
1167 s galGal2.chrM 16177 2 + 16775 AA
1168 s fr1.chrUn 320906270 2 + 349519338 AT
1169
1170 a score=-677.0
1171 s hg17.chrM 16024 2 + 16571 TT
1172 s rn3.chr2 24400074 2 - 258222147 TT
1173 s canFam1.chrM 15457 2 + 16727 AC
1174 s galGal2.chrM 16177 2 + 16775 AA
1175 s fr1.chrUn 320906270 2 + 349519338 AT
1176
1177 a score=0.0
1178 s hg17.chrM 16026 12 + 16571 CTTTCATGGGGA
1179
1180 a score=-2533.0
1181 s hg17.chrM 16026 1 + 16571 C---
1182 s panTro1.chr11 95343143 1 - 123086034 C---
1183 s rn3.chr2 24400076 1 - 258222147 T---
1184 s canFam1.chrM 15459 1 + 16727 A---
1185 s galGal2.chrM 16179 4 + 16775 ACCC
1186
1187 a score=-1884.0
1188 s hg17.chrM 16026 1 + 16571 C---
1189 s rn3.chr2 24400076 1 - 258222147 T---
1190 s canFam1.chrM 15459 1 + 16727 A---
1191 s galGal2.chrM 16179 4 + 16775 ACCC
1192
1193 a score=-1714.0
1194 s hg17.chrM 16027 11 + 16571 TTTCATG------GGGA
1195 s panTro1.chr11 95343144 11 - 123086034 TTTCATG------GGGA
1196 s mm5.chrM 15415 11 + 16299 CTTCTTG------AGTA
1197 s rn3.chr2 24400077 17 - 258222147 TTTTCTAACAGACAGAA
1198 s galGal2.chrM 16183 3 + 16775 --------------TTA
1199
1200 a score=-13109.0
1201 s hg17.chrM 16038 35 + 16571 AGCAGATTT-----GGGTACCA--CCCAAG--TATTGACTCACC
1202 s panTro1.chr11 95343155 35 - 123086034 AGCAAATTT-----GGGTACCA--CCCAAG--TATTGGCTCACC
1203 s mm5.chrM 15426 25 + 16299 CATAAATTT-----ACATAGTA--CAACAG--TA----------
1204 s rn3.chr2 24400094 42 - 258222147 AACAGACCTTTTAAAAGTACTAGGTCCAAA--TTTCCACTTACC
1205 s canFam1.chrM 15460 26 + 16727 --------------CCCCTACA--TTCATA--TATTGAATCACC
1206 s galGal2.chrM 16186 37 + 16775 AACCGCCCG-----AATTGCCC--CCCGAGACAACCCACGCACA
1207 s fr1.chrUn 320906272 21 + 349519338 AATACATAT-----ATGTATTA--TCCC----------------
1208
1209 a score=-154.0
1210 s hg17.chrM 16073 3 + 16571 CAT
1211 s panTro1.chr11 95343190 3 - 123086034 CAT
1212 s mm5.chrM 15451 3 + 16299 CAT
1213 s canFam1.chrM 15488 2 + 16727 TA-
1214 s galGal2.chrM 16231 1 + 16775 --T
1215 s fr1.chrUn 320906293 3 + 349519338 CAT
1216
1217 a score=0.0
1218 s hg17.chrM 16076 9 + 16571 CAACAACCG
1219
1220 a score=1632.0
1221 s hg17.chrM 16076 6 + 16571 -CAACAA
1222 s panTro1.chr11 95343193 6 - 123086034 -CAACAA
1223 s galGal2.chrM 16232 7 + 16775 ACAACAA
1224
1225 a score=228.0
1226 s hg17.chrM 16082 3 + 16571 CCG
1227 s panTro1.chr11 95343199 3 - 123086034 CCG
1228 s rn3.chr7 48860662 3 - 143082968 CTG
1229 s canFam1.chrM 15492 3 + 16727 GTG
1230 s galGal2.chrM 16239 1 + 16775 --A
1231
1232 a score=-66332.0
1233 s hg17.chrM 16085 177 + 16571 CTAT----GTATTTC---GTACATTA--CTGCCAGCCACCATGAATATTGTACGGTACCATAAATACTTGACCACCTGTAGTACATA-AAAACCCAACCCACATCAAACCCCCCCCCCCCAT--------GCTTACAAGCAAGTACAGCAAT-------CAACCTTCAACTATCACACATCAAC--TGCAACTCCAAAGCCA---CC
1234 s panTro1.chr11 95343202 182 - 123086034 CCAT----GTATATC---GTGCATTA--CTGCCAGCCACCATGAGTATTATATAGTACCATAAATACTTGAACATCCATAGTACATACAAAACCCATCCCACATTAAA-ACCTCCTCCCAAT--------GCTTACAAGCACGAACAGCGATTGGCCCACA-----CAACTACCGAACATTAAC--CCTATCTCCAAAGACAATCCC
1235 s mm5.chrM 15454 84 + 16299 TTAT----GTATATC---GTACATTA-----------------------------------AACTATTT----------------------------------------------TCCCCAA--------GCATATAAGCTAGTACATTAA---------------------------ATCAATGGTTCAGGTCATAAAATAATCAT
1236 s rn3.chr7 48860665 152 - 143082968 GCAT----GCA-------GTGCATAA------------TAATGTGTATAGTGCA-------TACTACATTTATGTATATAATATATT--------------AATTTATTTCCCCTCCCATATAATAAAGAGCTAACTACTAAATACAGAAG-----ACTAAACATTCTAATACAAGTAAATATT--TTCATTAACAGGGCCA----T
1237 s canFam1.chrM 15495 138 + 16727 CTATGTCAGTATCTCCAGGTAAACCCTTCTCCCCTCCCCTATGTACGTCGTGCATT-----AATGGTTT----------------------------------------------GCCCCAT--------GCATATAAGCATGTACATAAT-----ATTATATCCTTACATAGGACATATTAAC--TCAATCTCATAATTCA---CT
1238 s galGal2.chrM 16240 163 + 16775 CAAA----GCTAACA---ACAAACCT--CACCCAGCCACCAAAAACAACCCAACCCCACATGAATA---AAACACCGCAACTCCACTAAAATCCAACCGAGCAAAAGACACACCCCCGCCAT--------------------CAACAGTAA--------CCACCCCCACCTTTCAAAAATCAAC-GAGCCCTCCCAGAACCA---CC
1239 s fr1.chrUn 320906296 126 + 349519338 TCAT----ATATATT---AAACATTA-----------ATATAATGCATAACTAAGACATAGTACTATATATTCACCTATAATTCCTATAA---------------------------CCCAT-------------AAAGCAAGTACAGAAA-----ACTAA-------------AAATGCTAAA--AGCATGACTAGAAAAA---TC
1240
1241 a score=-2739.0
1242 s hg17.chrM 16262 5 + 16571 --CCTCA
1243 s panTro1.chr11 95343384 5 - 123086034 --CAACA
1244 s mm5.chrM 15538 5 + 16299 --CAACA
1245 s rn3.chr7 48860817 5 - 143082968 --TATCA
1246 s galGal2.chrM 16414 4 + 16775 --CACC-
1247 s fr1.chrUn 320906422 5 + 349519338 CCTAA--
1248
1249 a score=0.0
1250 s hg17.chrM 16267 6 + 16571 CCCACT
1251
1252 a score=-2037.0
1253 s hg17.chrM 16267 6 + 16571 CCCACT
1254 s panTro1.chr11 95343389 3 - 123086034 C---CT
1255 s mm5.chrM 15543 1 + 16299 T-----
1256 s rn3.chr7 48860822 6 - 143082968 TCCAAT
1257
1258 a score=-14864.0
1259 s hg17.chrM 16273 24 + 16571 AGGATACCAACAA---ACCTACCCACC-
1260 s panTro1.chr11 95343392 24 - 123086034 AGAATATCAACAG---ACCTGCACATC-
1261 s mm5.chrM 15544 17 + 16299 ---AAATCAATA-------TATATACC-
1262 s rn3.chr7 48860828 12 - 143082968 GTCATATCAATG----------------
1263 s canFam1.chr38 16296834 26 - 26492144 TGAATATCTACAGC-AAAATTAACATG-
1264 s galGal2.chrM 16418 24 + 16775 ---AAGACAAAACCTAGCCCATACCCC-
1265 s fr1.chrUn 320906427 24 + 349519338 AAATTGTTGAAG----AACTGAACGAAA
1266
1267 a score=-1707.0
1268 s hg17.chrM 16297 28 + 16571 CTTAACAG---------TACATAGTAC-------ATAAAGTCAT
1269 s panTro1.chr11 95343416 29 - 123086034 CTTAACAG--------ATACATAGCAC-------ATACAGTCAT
1270 s mm5.chrM 15561 44 + 16299 ATGAATATTATCTTAAACACATTAAACTAATGTTATAAGGACAT
1271 s rn3.chr7 48860840 18 - 143082968 ----------------ATACATAG----------ACATATCTAT
1272 s canFam1.chr38 16296860 28 - 26492144 ATTAATAT---------TACATAGCAC-------ATAATATTAT
1273 s fr1.chrUn 320906451 24 + 349519338 ------------TTTAAGACCGAACA--------ATAAACTCAT
1274
1275 a score=831.0
1276 s hg17.chrM 16325 9 + 16571 -------TTACCGTAC
1277 s panTro1.chr11 95343445 9 - 123086034 -------TTATCGTAC
1278 s mm5.chrM 15605 16 + 16299 ATCTGTGTTATCTGAC
1279 s rn3.chr7 48860858 10 - 143082968 ------GTTATTTTAC
1280 s canFam1.chr38 16296888 9 - 26492144 -------TGGTTGGAT
1281
1282 a score=7636.0
1283 s hg17.chrM 16334 51 + 16571 ATAGCACATTACAGTCA-AATCCCTTCTCGTCCCCATG------------GATGACCCCCCTCA
1284 s panTro1.chrUn_random 225547893 51 - 240967748 ATAGCGCATTACAGTCA-AATCCCTCCTTGCCCCCACG------------GATGCCCCCCCTCA
1285 s mm5.chrM 15621 51 + 16299 ATA-CACCATACAGTCATAAACTCTTCTCTTCCATATG------------ACTATCCCCTTCCC
1286 s rn3.chr7 48860868 51 - 143082968 ATAAACCGTTCTAGTCA-AATTACTTTTTTGGCATATA------------GCTATCTCCTTCTC
1287 s canFam1.chr38 16296897 62 - 26492144 ATACCCCATTA-AGTCA-AATTATTACCAGACAACATGCCTATCATAACTGATAACCACATTTA
1288
1289 a score=1592.0
1290 s hg17.chrM 16385 18 + 16571 GATAGGGGTCCCTTGACC
1291 s panTro1.chrUn_random 225547944 18 - 240967748 GATAGGAATCCCTTAATC
1292 s mm5.chrM 15672 17 + 16299 CATTTG-GTCTATTAATC
1293 s rn3.chr7 48860919 16 - 143082968 AATTGG--TCTGTTCATC
1294 s canFam1.chrM 15671 15 + 16727 AATAAGGG---CTTAATC
1295
1296 a score=10758.0
1297 s hg17.chrM 16403 30 + 16571 ACCATCCTCCGTGAAATCAATATCCC------GCAC
1298 s panTro1.chr14 78287170 35 + 97804244 ACCAACCTCCAAGAAATCATCATCCCTCTGGGGCA-
1299 s mm5.chrM 15690 30 + 16299 ACCATCCTCCGTGAAACCAACAACCC------GCCC
1300 s rn3.chr7 48860936 30 - 143082968 ACCATCCTCTGAGAAACCAACAACCC------AACA
1301 s canFam1.chrM 15686 30 + 16727 ACCATGCCTCGAGAAACCATCAACCC------TTGC
1302
1303 a score=53286.0
1304 s hg17.chrM 16433 96 + 16571 AAG-AGTGCTACTCTCCTCGCTCCGGGCCCAT-AACACTTGGGGGTAGCTAAAGTG-AACTGTATCCGACATCTGGTTCCTACTTCAGGGCCATAAA---GC
1305 s panTro1.chr14 78287205 92 + 97804244 ------TGTTACTCTCCTCACTCTGGGCCCAT-AACACTTGGGAGTGACTATACTGAAACTATACCTGGCATCTGGTTCTTACCTCAGGGCCAtgaa---ac
1306 s mm5.chrM 15720 97 + 16299 ACC-AATGCCCCTCTTCTCGCTCCGGGCCCAT-TAAACTTGGGGGTAGCTAAACTGAAACTTTATCAGACATCTGGTTCTTACTTCAGGGCCATCAA---AT
1307 s rn3.chr7 48860966 98 - 143082968 ATC-TATGCCCATCTTCCTGCTCTAGGCCCATCTTGACTTGGGGGTAGCTAATATGAGACTTTATCAGACATCTGCTTTTTACTCTAGGGCCATTAA---AT
1308 s canFam1.chrM 15716 102 + 16727 TCGTAATGTCCCTCTTCTCGCTCCGGGCCCATACTAACGTGGGGGTTACTATCATGAAACTATACCTGGCATCTGGTTCTTACTTCAGGGCCATAACCTTAT
1309 s fr1.chrUn 320906557 96 + 349519338 ATG-CATATTATTATTGAAGGTGAGGGACAAT-AACAGTGGGGGTTTCACTAAATG-AACTATTCCTGGCATTTGGTTCCTACTTCAGGGCCATTAA---TC
1310
1311 a score=8581.0
1312 s hg17.chrM 16529 36 + 16571 -----------CTAA-ATAGCCCACACGTTCCCCTTAAATAAGACATC
1313 s panTro1.chr14 78287297 48 + 97804244 taagattgaaactaagattgCCCACACATTTCACTTAAATAAGACGTC
1314 s mm5.chrM 15817 37 + 16299 -----------GCGTTATCGCCCATACGTTCCCCTTAAATAAGACATC
1315 s rn3.chr7 48861064 36 - 143082968 -----------GCATTATCAACCATGTGTTCC-CTCAAATAAAACATC
1316 s canFam1.chrM 15818 37 + 16727 -----------TTACTCCAATCCTACTAATTCTCGCAAATGGGACATC
1317
1318 a score=2403.0
1319 s hg17.chrM 16565 6 + 16571 ACGATG
1320 s mm5.chrM 15854 6 + 16299 TCGATG
1321 s rn3.chr7 48861100 6 - 143082968 TCAATG
1322 s canFam1.chrM 15855 6 + 16727 TCGATG
1323