Mercurial > repos > dave > interval2maf
diff test-data/chrM.maf @ 0:d38f317fa9d4 draft default tip
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author | dave |
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date | Fri, 10 Jul 2020 16:05:40 -0400 |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/chrM.maf Fri Jul 10 16:05:40 2020 -0400 @@ -0,0 +1,1323 @@ +##maf version=1 scoring=multiz.v7 +# multiz.v7 R=10 M=0 /cluster/bluearc/hg17/multiz.2004-07-13/danRer1/chrM.maf /cluster/bluearc/hg17/multiz.2004-07-13/panTro1mm5rn3canFam1galGal2fr1/chrM.maf - +# multiz.v7 R=10 M=0 /cluster/bluearc/hg17/multiz.2004-07-13/fr1/chrM.maf /cluster/bluearc/hg17/multiz.2004-07-13/panTro1mm5rn3canFam1galGal2/chrM.maf - +# multiz.v7 R=10 M=0 /cluster/bluearc/hg17/multiz.2004-07-13/galGal2/chrM.maf /cluster/bluearc/hg17/multiz.2004-07-13/panTro1mm5rn3canFam1/chrM.maf - +# multiz.v7 R=10 M=0 /cluster/bluearc/hg17/multiz.2004-07-13/canFam1/chrM.maf /cluster/bluearc/hg17/multiz.2004-07-13/panTro1mm5rn3/chrM.maf - +# multiz.v7 R=10 M=0 /cluster/bluearc/hg17/multiz.2004-07-13/rn3/chrM.maf /cluster/bluearc/hg17/multiz.2004-07-13/panTro1mm5/chrM.maf - +# multiz.v7 R=10 M=0 /cluster/bluearc/hg17/multiz.2004-07-13/mm5/chrM.maf /cluster/bluearc/hg17/multiz.2004-07-13/panTro1/chrM.maf - +a score=373.0 +s hg17.chrM 10 4 + 16571 CTAT +s mm5.chrUn_random 29351899 4 + 102265694 CTAT + +a score=8367.0 +s hg17.chrM 14 46 + 16571 CACCCTATTAACCACTCACGGGAG--CTCTCCATGCATTTGGTATTTT +s panTro1.chr13 3552480 47 + 134309081 CACCCTATTAACCAGTCACGGGAGGACTGT-CATGCATTTGGTATTTT +s mm5.chrUn_random 29351903 47 + 102265694 CACTCTATTAACCAGTCATGGGAGCATGAT-CATGAATTTGGTATTTT + +a score=11228.0 +s hg17.chrM 60 133 + 16571 ---CGTCTGGGGGGTGTGCACGCGAT-----AGCATTGCGAGACGCTGGAGCC-----GGAGCACCCTATGTCGCAGTATCTGTCTTTGATTCCTGCCTCATTCTATTATTTA--TCGCACCTACGTTCAATATTACAGGCGAACATA +s panTro1.chr6 29890008 133 + 161576975 ---CGTCTGGGGGGTGTGCACGCGAT-----AGCATTGCGAAACGCTGGCCCC-----GGAGCACCCTATGTCGCAGTATCTGTCTTTGATTCCTGCCCCATTCCATTATTTA--TCGCACCTACGTTCAATATTACGAGCGAGCATG +s mm5.chrUn_random 29351950 137 + 102265694 TAACTTTTAGGA-------ATGCTATCACTCACCATTGCAGAAGGCCTGGTCCCCTCTGAATCAGC---TGTAGACGAACTCGGATTGGATTTCTGCCAAA-TCAATTGTAGAAGCTGAGCTTATATTGAATATTCTAACCTCGCATA + +a score=-296.0 +s hg17.chrM 193 11 + 16571 CCTACTAAAGT +s panTro1.chr6 29890141 11 + 161576975 TTAACCAAGGT +s mm5.chrUn_random 29352087 11 + 102265694 ACAACCATAAG +s galGal2.chrM 851 11 + 16775 CCCGGTAAATG + +a score=311.0 +s hg17.chrM 204 2 + 16571 GT +s mm5.chrUn_random 29352098 2 + 102265694 AT +s galGal2.chrM 862 2 + 16775 GT + +a score=9848.0 +s hg17.chrM 206 33 + 16571 GTTAATTAATTAATGCTTGTAGGACATAATAAT +s panTro1.chr13 3552675 33 + 134309081 GTTAATTAATTCATGCTTGAAAGACATAACAAT +s mm5.chrUn_random 29352100 29 + 102265694 ----GTTAATTCATGCTTGAAGGACATAATAAT +s galGal2.chrM 864 33 + 16775 GCTATTTAGTGAATGCTTGTCGGACATATTTTT + +a score=5.0 +s hg17.chrM 239 2 + 16571 AA +s panTro1.chr6 29890187 2 + 161576975 AG +s galGal2.chrM 897 2 + 16775 AT + +a score=-369.0 +s hg17.chrM 239 2 + 16571 AA- +s galGal2.chrM 897 2 + 16775 -AT + +a score=1146.0 +s hg17.chrM 241 2 + 16571 CA +s panTro1.chr6 29890189 2 + 161576975 CA +s mm5.chrUn_random 29352129 2 + 102265694 CA +s galGal2.chrM 899 2 + 16775 CA + +a score=-73.0 +s hg17.chrM 243 16 + 16571 ATTGA-ATGTCTGCACA +s mm5.chrUn_random 29352131 17 + 102265694 ATAGACACATATGCACA +s galGal2.chrM 901 9 + 16775 --------ATTTTCACT + +a score=-48.0 +s hg17.chrM 259 14 + 16571 ---GCCGCTTTCCACAC +s panTro1.chr6 29890206 14 + 161576975 ---GCCGCTTTTCACAC +s mm5.chrUn_random 29352148 7 + 102265694 ----------ATCACCT +s galGal2.chrM 910 17 + 16775 TCCTCTATTTTCTTCAC + +a score=-3812.0 +s hg17.chrM 273 28 + 16571 AGACATCATAACAAAAAA----------TTTCCACCAA +s panTro1.chr6 29890220 27 + 161576975 CAACATCATAACAAAAA-----------TTTCCGCAAA +s mm5.chrUn_random 29352155 38 + 102265694 ACCCTTATTTTCAAGAACTATTTATGATTTAACTCACA +s canFam1.chrX 31796412 23 - 126913094 AGACATTATATTAACTAA---------------ACCAA +s galGal2.chrM 927 22 + 16775 ------AAAACTAGGAAA----------TTCACCACAA + +a score=1590.0 +s hg17.chrM 301 35 + 16571 ACCCCCCCCTCCCCCCGCTTCTGGCCACAGCAC--------TT +s panTro1.chr6 29890247 33 + 161576975 GCCCCCC--TCCCCCCACTTCTGGCCACAGCAC--------TC +s mm5.chrUn_random 29352193 39 + 102265694 ACCCCCC----CCAACATCTCTGACTTTATCATGGACATAGGT +s canFam1.chrX 31796435 33 - 126913094 ACCCCCTCTACCCCCCA--TAAACTTATATTAT--------TT + +a score=-6005.0 +s hg17.chrM 336 91 + 16571 A-AACACATCT--------------CTGCCAAACCCCAAAAA-CAAAGAAC-----CCTA---ACAC-CAGCCT-----AACCAGATTTC--AAATTTTAT---CTTTAGGC-GGTATGCACTTTTA +s panTro1.chr6 29890280 92 + 161576975 A-AACACATCT--------------CTGCCAAACCCCAAAAAATAAAGAAC-----CCTA---ACAT-CAGCCC-----AACCAGATCTC--AAATTTCAT---CTTTTGGC-GGTATGCACTTTTA +s mm5.chrUn_random 29352232 86 + 102265694 A-AATATGCAC--------------TTGTGAAAACCCCAAGA-----GA--------CTA---AAATGCAACCC-----AGTCAGAGCCCAAAAAAGTTAT---ATTTTAAT-CATGAATA-TCCCA +s canFam1.chrX 31796468 112 - 126913094 ACAATATACCTATTTGTTTTGTGTCCCGCCAAACCCCAAAAA--CAGGA--------CTAAGTAAATGTAGCACTCATAAGCCATGTCT---AAATTTCATACGATTATAAC-TCTAGTTA-ATTTA +s galGal2.chrM 988 96 + 16775 A-AAAACATTT--------------TTTAAAAAACTAAATTACATACAAACTACCGCATA---AAAT-CCCTCA-----AACTATACA----AACGTTTAT---CGTATAATATATATACATTATTG + +a score=583.0 +s hg17.chrM 427 38 + 16571 ACAGTCACCCCCCAACTAACACATTATTTTCCC-----CTCCC +s panTro1.chr6 29890372 35 + 161576975 ACAGTCACCCCTCAACTAACATATCAT---CCC-----CCTCA +s mm5.chrUn_random 29352318 43 + 102265694 ACAACTACCCCTTGATTGATATAAAATTTTCCCAAAAATCTCA +s canFam1.chrX 31796580 15 - 126913094 ACA-----------------AAATAAT-----------TTCCT + +a score=-3742.0 +s hg17.chrM 465 34 + 16571 A-----CTCCCATA-----CTACTAATCTC---ATCAATACAACCCC---- +s panTro1.chr6 29890407 34 + 161576975 A-----CTCCTATT-----CTACTAGTCCC---ACCAATGCAACCCC---- +s mm5.chrUn_random 29352361 44 + 102265694 AGATATCTACCAAATAAGCCTCCATATCTA---ATAAATACAGTAAC---- +s canFam1.chrX 31796595 37 - 126913094 A-----CGCCTAAA-----TCTGCAATCTATCTATAGATAGGACTTC---- +s galGal2.chrM 1107 38 + 16775 A-----CTCCACTA-----CCAAAACCATC---ATTAAAACAAAAATTTAC + +a score=-3187.0 +s hg17.chrM 499 23 + 16571 C----GCCCATCCTA--CCCAGCACACAC +s panTro1.chr6 29890441 24 + 161576975 C---TACCCACCCTA--CCCAGCACAGAC +s mm5.chrUn_random 29352405 23 + 102265694 TAGATTTTCACCCTAATACTAGT------ +s canFam1.chrX 93613525 23 + 126913094 ----CACCCCTTCCA--TTCAACTCACAA +s galGal2.chrM 1145 23 + 16775 ----ATGCCACTTAA--CTCCCCTCACAA + +a score=-6370.0 +s hg17.chrM 522 50 + 16571 ACACCGCTGC-----TAACCCC------------------------ATACCCCGAACCAACCAAACCCCA-------AAGACACCC-- +s panTro1.chr9 125919315 50 - 136640551 ACACCGCTGC-----TAGCCCC------------------------ATACCCCGAGCCAACCAAACCCCA-------AAGACACCC-- +s mm5.chrUn_random 29352428 83 + 102265694 ATAATGCCTTGAATATAACCCTTTGAAAGCACTACCCTAGTGCATGACACTCTAAATCAACTATTCCCTAA---TATAAGAAACCC-- +s canFam1.chrX 93613548 52 + 126913094 ----------AAATCCAATCCC------------------------ACATTCTCATCAACATAATATATAACACCATAAAACACCT-- +s galGal2.chrM 1168 45 + 16775 --ACAATCGT-----TATTT--------------------------ATATTGTTAATTAGCAAACAC----------AAAACCCGCCT + +a score=345.0 +s hg17.chrM 572 3 + 16571 CCC +s panTro1.chr9 125919365 3 - 136640551 CAT +s mm5.chrUn_random 29352511 3 + 102265694 CCT +s galGal2.chrM 1213 3 + 16775 TCT + +a score=91.0 +s hg17.chrM 575 1 + 16571 A +s galGal2.chrM 1216 1 + 16775 A + +a score=-31.0 +s hg17.chrM 575 1 + 16571 A +s mm5.chrUn_random 29352629 1 + 102265694 G + +a score=91.0 +s hg17.chrM 575 1 + 16571 A +s panTro1.chr9 125919368 1 - 136640551 A + +a score=531.0 +s hg17.chrM 576 2 + 16571 CA +s panTro1.chr9 31868387 2 - 136640551 CA +s mm5.chrUn_random 29352630 2 + 102265694 CA +s galGal2.chrM 1217 2 + 16775 CC + +a score=1627.0 +s hg17.chrM 578 4 + 16571 GTTT +s panTro1.chr9 31868389 4 - 136640551 GTTA +s mm5.chrUn_random 29352632 4 + 102265694 GTTA +s galGal2.chrM 1219 4 + 16775 ACTA +s fr1.chrUn 320907090 4 + 349519338 GCTA + +a score=11543.0 +s hg17.chrM 582 12 + 16571 ATGTAGCTTACC +s panTro1.chr9 31868393 12 - 136640551 ATGTAGCTTAAT +s mm5.chrM 4 12 + 16299 ATGTAGCTTAAT +s canFam1.chrM 4 12 + 16727 ATGTAGCTTAAT +s galGal2.chrM 1231 12 + 16775 CCATAGCTTAAC +s fr1.chrUn 320907094 12 + 349519338 GCGTAGCTTAAC + +a score=-20.0 +s hg17.chrM 594 5 + 16571 TCCTC +s fr1.chrUn 320907106 1 + 349519338 ----C + +a score=-3855.0 +s hg17.chrM 594 4 + 16571 TCCT +s panTro1.chr9 31868405 4 - 136640551 TATT +s mm5.chrM 16 2 + 16299 AA-- +s canFam1.chrM 16 4 + 16727 TAAT +s galGal2.chrM 1243 3 + 16775 CCA- + +a score=0.0 +s hg17.chrM 598 1 + 16571 C + +a score=38.0 +s hg17.chrM 598 1 + 16571 C +s panTro1.chr9 31868409 1 - 136640551 T +s mm5.chrM 18 1 + 16299 C + +a score=100.0 +s hg17.chrM 598 1 + 16571 C +s galGal2.chrM 1246 1 + 16775 C + +a score=34712.0 +s hg17.chrM 599 43 + 16571 AAAGCAATACACTGAAAATGTTTAGACGGGCT----CACATCACCCC +s panTro1.chr9 31868410 43 - 136640551 AAAGCAAGACACTGAAAATGTCTAGATGGGTT--TGCACA--ACCCC +s mm5.chrM 19 42 + 16299 AAAGCAAAGCACTGAAAATGCTTAGATGGATA--ATTGTA--TCCC- +s rn3.chr7 48861581 43 - 143082968 AAAGCACAGCACTGAAAATGTTTAGATGAACT-TTTAACA--TCCC- +s canFam1.chrM 20 42 + 16727 AAAGCAAGGCACTGAAAATGCCAAGATGAGTC---GCACG--ACTCC +s galGal2.chrM 1247 43 + 16775 AAAGCATGGCACTGAAGATGCCAAGATGGTACCTACTATA--CCT-- +s fr1.chrUn 320907107 44 + 349519338 AAAGCAGAGTACTGAAGATGCTAAGATGGGCCCTGAAAAG--TCCC- +s danRer1.chrM 968 44 + 16596 AAAGCACGGCACTGAAGCTGCCAAGATGGGCCCTAATAAG--CTCC- + +a score=8181.0 +s hg17.chrM 642 9 + 16571 ATAAACAAA +s panTro1.chr3 35462429 9 - 209662276 ataaacaaa +s mm5.chrM 61 9 + 16299 ATAAACACA +s rn3.chr7 48861624 9 - 143082968 ATAAAAAGG +s canFam1.chrM 62 9 + 16727 ATAAACATA +s galGal2.chrM 1290 9 + 16775 GTGGGCAAA +s fr1.chrUn 320907151 9 + 349519338 GCAGGCACA +s danRer1.chrM 1012 9 + 16596 GCATGCACA + +a score=-123.0 +s hg17.chrM 651 1 + 16571 T +s danRer1.chrM 1021 1 + 16596 A + +a score=0.0 +s hg17.chrM 651 1 + 16571 T + +a score=-310.0 +s hg17.chrM 651 1 + 16571 T +s mm5.chrM 70 1 + 16299 A +s rn3.chr7 48861633 1 - 143082968 T +s canFam1.chrM 71 1 + 16727 A + +a score=-123.0 +s hg17.chrM 651 1 + 16571 T +s fr1.chrUn 320907160 1 + 349519338 A + +a score=58671.0 +s hg17.chrM 652 91 + 16571 AGGTTTGGTCCTAGCCTT-TCTATTAGCTCTTAGTAAGATTACACATGCAAGCATCCCCGTTCCAGTG------AGTTCACCCTCTAAA--------TCACCACGA----- +s panTro1.chr3 35462438 80 - 209662276 ----------ctgGCCTT-TTCATTAGCTCTTAGTAGGATTACACATGCAAGCATCCCCACCCCAGTGAAAATGA------CCTCTGGA--------TCACCG-GC----- +s mm5.chrM 71 88 + 16299 AGGTTTGGTCCTGGCCTT-ATAATTAATTAGAGGTAAAATTACACATGCAAACCTCCATAGACCGGTGTAAA--A------TCCCTTAA--------ACATTT-AC----- +s rn3.chr18 23098529 91 - 87338544 AGGTTTGGTTCTGACTTTGGTGATTATTTTGAGGTAGATTTACATATGCAAA-ATCACTAAACCATTGTGAA--A------TCCCTTAAAA-----TTCACAT-GG----- +s canFam1.chrM 72 90 + 16727 AGGTTTGGTCCTAGCCTT-CCTATTAGTTTTTAGTAGACTTACACATGCAAGCCTCCACGCCCCAGTGAGAA--T------GCCCTTAAAA------TCACCA-GT----- +s galGal2.chrM 1299 94 + 16775 AGACTTAGTCCTAACCTT-TCTATTGGTTTTTGCTAGACATATACATGCAAGTATCCGCATCCCAGTGAAAA--T------GCCCCCAAACCTTTCTTCCCAA-------- +s fr1.chrUn 320907161 88 + 349519338 AAGCTTGGTCCTGACTTT-ACTAACAACTCTGATCAAACTTACACATGCAAGTATCCGCATCCCAGTGAAAA--T------GCCCCCCG--------CCCCCC-GT----- +s danRer1.chrM 1022 93 + 16596 AGGCATGGTCCCGACCTT-TTGATCAGCTTTTACCTAATTTACACATGCAAGTCTCCGCACCCCTGTGAATA--C------GCCCTCAA--------TCCCCA-AACCTGG + +a score=211943.0 +s hg17.chrM 743 295 + 16571 TCAA-----AAGGGACAAG--CATCAAGCACGCAGCAATGCAGCTCAAAACGCTTAGCCT-AGCCACACCCCCACGGG-AAACAGCAGTGATTAACCTTTAGCAATAAACGAAAGTTTAACTAAGCTATACTAAC-CCCAGGGTTGGTCAATTTCGTGCCAGCCACCGCGGTCACACGATTAACCCAAGTCAATAG-AAGC-CGGCGTAAAGAGTGT----TTTAGATC-ACCCCCTCCCCAATAAAGCTAAAACTCACCTGAGTTGTAAAAAAC-TCCAGTT--GACACAAAATAGACT-ACGAAAGTGGCTT--TA +s panTro1.chr3 35462518 292 - 209662276 TCAA-----AAGGAGCAGG--TATCAAGCATGCACGAATGCAGCTCAAAACACTTTGCTC-AACCATACCCCCAAGGG-AAACAGCAGTGATAAATCCTTAGTAATAAACGAAAGTTTGACCAAGCCATACTAATATTTAGGGTTGGTTAATTTTGTGCCAGCCACTGCGGCCATAAGATTAACTCGAGCTAATAG-AACT-TGGCGTAAAGAGTGT----TTAAGGTCTACCTTC-----AATAAAGCTAAGCTCCATCTAAGCTGTAAAAAAC-TCCAGCT--GACATAAAATATACT-ATGAAAGTGACTT--TA +s mm5.chrM 159 295 + 16299 TTAAAATTTAAGGAGAGGG--TATCAAGCA--CATTAAAATAGCTTAAGACACCTTGCCT-AGCCACACCCCCACGGG-ACTCAGCAGTGATAAATATTAAGCAATAAACGAAAGTTTGACTAAGTTATACCT---CTTAGGGTTGGTAAATTTCGTGCCAGCCACCGCGGTCATACGATTAACCCAAACTAATTA-TCTT-CGGCGTAAAACGTGTCAACTATAAATAAATA--------AATAGAATTAAAATCCAACTTATATGTGAAAATT-CATTGTTAGGACCTAAACTCAATA-ACGAAAGTAATTC--TA +s rn3.chr7 48861782 267 - 143082968 TTAA-----AAGGGGGGAGATTGTCTAGCATACAGTAA-GTAGCTTCAGAAACCTTGCCT-AGTTTTATCCCTATGGG-ACTCAGC----ATCAGGACTTTG-----------ACTTTGAGTAAGTTATACCT---TTTAGAATTGGTAAACTTCTTGACAGCC-CTGCAGTCATA-GACAAACTCAACTT---------T-TTACATAAAACATGT----TCAAGATATAAACTTT----CATGGAAGTAAAAGCAAATTTATATGTGAAAATT-CATAGTT--GGTTTTAAACCCACTAATGAAAATGATTC--TA +s canFam1.chrM 164 292 + 16727 TCTA-----AAGGAGCAGG--TATCAAGCACACTCTTAAGTAGCTCATAACACCTTGCTA-AGCCACACCCCCACGGG-ATACAGCAGTGATAAAAATTAAGCCATAAACGAAAGTTTGACTAAGCCATACTA---AATAGGGTTGGTAAATTTCGTGCCAGCCACCGCGGTCATACGATTAACCCAAACTAATAG-GCCTACGGCGTAAAGCGTGT----TCAAGATACTTTTAC-----ACTAAAGTTAAAACTTAACTAAGCCGTAAAAAGC-TACAGTT--ATCATAAAATAAACC-ACGAAAGTGACTTTATA +s galGal2.chrM 1393 296 + 16775 GCAA-----AAGGAGCAGG--TATCAGGCACACTCAGCAGTAGCCCAAGACGCCTTGCTTAAGCCACACCCCCACGGGTACTCAGCAGTAATTAACCTTAAGCAATAAGTGTAAACTTGACTTAGCCATAGCAA--CCCAGGGTTGGTAAATCTTGTGCCAGCCACCGCGGTCATACAAGAAACCCAAATCAATAGCTACC-CGGCGTAAAGAGTGG----CCACATGTTATCTGCACCA-GCTAAGATTAAAATGCAACCAAGCTGTCATAAGC-CTAAGATC-CACCTAAACCCAACC---CAAATCCATCT--TA +s fr1.chrUn 320907252 296 + 349519338 ----GAAATAGGGAGTTGG--TATCAGGCACACAAATTTGTAGCCCATGACACCTAGCTT-TGCCACGCCCCCAAGGGAATTCAGCAGTGATAAACATTAAGCCATAAGTGAAAACTTGACTTAGTCATGATC---TAAAGAGTCGGTAAAACTCGTGCCAGCCACCGCGGTTATACGAGAGACCCAAGTTGTTAG-CCAA-CGGCGTAAAGGGTGG----TTAGAACTAAAAACAACAA-ACTGAGACCGAACACCTTCAAGGCTGTTATACGC-TTCCGAA--GCAACGAAGAACAATAACGAAAGTAGCCT--CA +s danRer1.chrM 1115 291 + 16596 -----GGACGAGGAGCAGG--TATCAGGCACAAAATTT-TTAGCCCAAGACGCCTAGCCA-AGCCACACCCCCAAGGGGATCCAGCAGTGACAAACATTAAGCTATAAGTGAAAACTTGACTCAGTTAAGGTA---AAGAGAGCCGGTAAAACTCGTGCCAGCAACCGCGGTTAAACGAGAGGCTCTAGTTGATAT-ACTA-CGGCGTAAAGGGTGG----TTAAGGAACAATGTAA----AATAAAGCCAAACGGCCCTTTAACTGTTATACGCTTTTAGAT--GCTAGAGGCCCAAAC-ACGAAAGTAGCTT--TA + +a score=156115.0 +s hg17.chrM 1038 167 + 16571 A----------CATATCTGAACACACAATAGCTAAGACCCAAACTGGGATTAGATACCCCACTATGCTTAGCCCTAAACCTCAACAGTTAAA-TCAACAAAACTGCTCGCCAGAACACTACGAG--CCACAGCTTAAAACTCAAAGGACCTGGCGGTGCTTCATATCCCTCTAGAGGAGC +s panTro1.chr3 35462810 166 - 209662276 A----------TAT-CCTGAAGACACAATAGCTAAAATCCAAACTTGGATTAGATACACCACTATGCTTAGCCCTAAACTCTAATAGTTATA-TTAACAAAACCATTTCCTAGAGTACCACAAG--CAACAGCTTAAAATTCAAAGGACTTGGCGGTGCTTTATATCCCTCTAAAGGAGC +s mm5.chrM 454 168 + 16299 G---------TCAT-TTATAATACACGACAGCTAAGACCCAAACTGGGATTAGATACCCCACTATGCTTAGCCATAAACCTAAATAATTAAATTTAACAAAACTATTTGCCAGAGAACTACTAG--CCATAGCTTAAAACTCAAAGGACTTGGCGGTACTTTATATCCATCTAGAGGAGC +s rn3.chr7 48862049 149 - 143082968 A----------TTG-ACTCAATACATGGCAGTTAAGATATAAATTAGTACTAAATACCTTACTATGC---------------AGTAATTTAG--CAACAAAA-TAAATGTGGGAGAGTTATTAG--CCACAGCTTAATACTCAAAGGACTTGGAGGGACTTTATATCCACCTAAAGCAGC +s canFam1.chrM 456 165 + 16727 A----------TAA-TCTGACTACACGATAGCTAAGACCCAAACTGGGATTAGATACCCCACTATGCTTAGCCCTAAACATAGATAATTTTA--CAACAAAATAATTCGCCAGAGGACTACTAG--CAATAGCTTAAAACTCAAAGGACTTGGCGGTGCTTTATATCCCTCTAGAGGAGC +s galGal2.chrM 1689 178 + 16775 GCCTCAACGATTAA-TTTTAACCCACGAAAGCTAGGACCCAAACTGGGATTAGATACCCCACTATGCCTAGCCCTAAATCTAGATACCTCCC-ATCACACATGTATCCGCCTGAGAACTACGAGCACAAACGCTTAAAACTCTAAGGACTTGGCGGTGCCCCAAACCCACCTAGAGGAGC +s danRer1.chrM 1406 169 + 16596 -----AATTAATTA-CCTGAACCCACGAAAGCTAAGAAACAAACTGGGATTAGATACCCCACTATGCTTAGCCATAAACAAAGACATTTAAT---CACAACAATGTTCGCCCGGACACTACAAG--CATAAGCTTAAAACCCAAAGGACCTGACGGTGCCTTAGATCCCCCTAGAGGAGC + +a score=248485.0 +s hg17.chrM 1205 298 + 16571 CTGTTCTGTAATCGATAAACCCCGATCAACCTCACCACCTCTTGCTC----AGCCTATATACCGCCATCTTCAGCAAACC-CTGATGAAGGCTACAAAGTAAGCGCAAGTA-CCCACGTAAAGACGTTAGGTCAAGGTGTAGCCCATGAGGTGGCAAGAAATGGGCTACATTTTCTAC-CCCAGAAAA-C---T--ACGATAGCCC-TTATGAAACTTAAGGGTCGAAGGTGGATTTAGCAGTAAACTGAGAGTAGA------GTGCTTAGTTGAACAGGGCCCTG--------------------------------------AAGCGCGTACACACCGCCCGTCACCCTCCTCA +s panTro1.chr3 35462976 302 - 209662276 CTGTTCTATAATCGATAAACCCTGGTGCTCCTCACCACCTCTTGCCC--CCAGCGTATATACCGCCATCTTCAGCAAACC-CTAA-AAAGGTCACAAAGTAAGTACAAGTA-CACACATAAAAACATTAGGTCAAGGTGTAGCCCATGAGGTGGCACAAAATTGGCTACATTTTCTATGTCCAGAAAATC---T-CACAACAACCT-TTAGGAAATCTAAGGGCTCAAGGAGGATTTAGCAGTAAACCAAGAGCAGA------GTGCTTGGTTGAATAAGGCCATG--------------------------------------AAGCATGCACACACCGCCCGTCACCCTCCTCA +s mm5.chrM 622 302 + 16299 CTGTTCTATAATCGATAAACCCCGCTCTACCTCACCATCTCTTGCTAATTCAGCCTATATACCGCCATCTTCAGCAAACC-CTAA-AAAGGTATTAAAGTAAGCAAAAGAATCAAACATAAAAACGTTAGGTCAAGGTGTAGCCAATGAAATGGGAAGAAATGGGCTACATTTTCTTATAAAAGAACA-T---T--ACTATACCCT-TTATGAAACTAAAGGACT-AAGGAGGATTTAGTAGTAAATTAAGAATAGA------GAGCTTAATTGAATTGAGCAATG--------------------------------------AAGTACGCACACACCGCCCGTCACCCTCCTCA +s rn3.chr7 48862416 326 - 143082968 CTGTT-TATAACCCGTAAACCCCATGTTAACTTACCATC---TGCTAATTTAGCCTATGTACTGATGTCTTCAGTAAACA-CTAA-AACGGAATTGCAGTAAGCAAATGAA-CAATTATAAAAATGTTAGGTTGAGGTGTAGCCTATGGGATGGAAAGTAATAGGCTATATTTTCTCA-ACAAGAACA-CACAT--ATTATTATCT-TTATGAAACTTAAGGAACCAAGGAGGATT------------AAGAATAGA------GAACCTAATTGAATTGAGCAATGACATACACACACACACACACACACACACACACACACACACACACACACACACAGCCTGTCACCTTCCTCA +s canFam1.chrM 621 303 + 16727 CTGTTCTATAATCGATAAACCCCGATAAACCTCACCACCTTTCGCTAATTCAGTCTATATACCGCCATCTTCAGCAAACC-CTCA-AAAGGTAGAACAGTAAGCACAATCATTTTACATAAAAAAGTTAGGTCAAGGTGTAACTTATGAGGTGGGAAGAAATGGGCTACATTTTCTAC-CCAAGAACA-T---TTCACGAATGTTT-TTATGAAA-TTAAAAACTGAAGGAGGATTTAGTAGTAAATTAAGAATAGA------GAGCTTAATTGAATAGGGCCATG--------------------------------------AAGCACGCACACACCGCCCGTCACCCTCCTCA +s galGal2.chrM 1867 308 + 16775 CTGTTCTATAATCGATAATCCACGATTCACCCAACCACCCCTTGCCAGCACAGCCTACATACCGCCGTCGCCAGCCCACCTCTAATGAAAGAACAACAGTGAGCTCAATAGCCCCTCGCTAATAAGACAGGTCAAGGTATAGCCTATGGGGTGGGA-GAAATGGGCTACATTTTCTAA-CATAGAACA-A------ACGAAAAAGG-ATGTGAAACCCGCCCTTAGAAGGAGGATTTAGCAGTAAAGTGAGATCATACCCCCTAAGCTCACTTTAAGACGGCTCTG--------------------------------------AGGCACGTACATACCGCCCGTCACCCTCTTCA +s danRer1.chrM 1575 299 + 16596 CTGTTCTAGAACCGATTATCCCCGTTAAACCTCACCATTTCTAGCAAAATCAGCCTATATACCACCGTCGCCAGCTTACC-CTGT-GAAGGAATAACAGTAAGCAAGATGGGCATAGCCCAGAAAGTCAGGTCGAGGTGTAGCACATGAAATGGGAAGAAATGGGCTACACTTTCTAC-CCCAGAATA-T------ACGAAAATGTAACATGAAAC--AATACTTGAAGGAGGATTTAGCAGTAAAAGAGAAGCAGA------GTGTCTCTTTGAACCCGGCTCTA--------------------------------------AGGCGCGTACACACCGCCCGTCACTCCCTCC- + +a score=1049.0 +s hg17.chrM 1503 2 + 16571 AG +s panTro1.chr3 35463278 2 - 209662276 AA +s mm5.chrM 924 2 + 16299 AA +s rn3.chr7 48862742 2 - 143082968 AA +s canFam1.chrM 924 2 + 16727 AG +s danRer1.chrM 1874 2 + 16596 GG + +a score=69.0 +s hg17.chrM 1503 2 + 16571 AG +s danRer1.chrM 1874 2 + 16596 GG + +a score=273.0 +s hg17.chrM 1505 1 + 16571 T +s panTro1.chr3 35463280 1 - 209662276 T +s mm5.chrM 926 1 + 16299 T + +a score=-1040.0 +s hg17.chrM 1505 2 + 16571 -TA +s canFam1.chrM 926 2 + 16727 -TA +s galGal2.chrM 2175 2 + 16775 -CA +s danRer1.chrM 1876 2 + 16596 TC- + +a score=-196.0 +s hg17.chrM 1506 5 + 16571 ATACT +s galGal2.chrM 2176 5 + 16775 AAGCC +s danRer1.chrM 1877 5 + 16596 CAATT + +a score=-1173.0 +s hg17.chrM 1506 2 + 16571 -AT +s panTro1.chr3 35463281 2 - 209662276 -AT +s galGal2.chrM 2177 1 + 16775 -A- +s danRer1.chrM 1877 2 + 16596 CA- + +a score=-1064.0 +s hg17.chrM 1507 6 + 16571 ---TACTTC +s galGal2.chrM 2180 3 + 16775 ---CAT--- +s danRer1.chrM 1878 6 + 16596 AATTGC--- + +a score=-59.0 +s hg17.chrM 1507 4 + 16571 TACT +s galGal2.chrM 2177 4 + 16775 AGCC +s danRer1.chrM 1878 4 + 16596 AATT + +a score=-3811.0 +s hg17.chrM 1511 2 + 16571 -TC +s mm5.chrM 927 1 + 16299 --T +s rn3.chr7 48862744 2 - 143082968 -TT +s galGal2.chrM 2182 1 + 16775 -T- +s danRer1.chrM 1882 2 + 16596 GC- + +a score=-14425.0 +s hg17.chrM 1513 23 + 16571 AAAGGACAT-------------TTAAC-TAA--AACCCC-- +s mm5.chrM 928 26 + 16299 AAATTAAAC-------------TTAACATAATTAATTTC-- +s rn3.chr7 48862746 23 - 143082968 AAAAAATAT-------------TCT---TTGCCTATATT-- +s canFam1.chrM 928 39 + 16727 ATAAGACACAACCATAACCATATTAACTTAACTAAAACA-- +s galGal2.chrM 2183 21 + 16775 -----------------CAACATCAAT-AAATATATACT-- +s danRer1.chrM 1884 21 + 16596 -------------------ACAAGAAA-TAATTAATACAGA + +a score=-271.0 +s hg17.chrM 1536 10 + 16571 TACGCATTTA +s galGal2.chrM 2208 10 + 16775 CTCCCGGCTA +s danRer1.chrM 1905 10 + 16596 AGCACAGACA + +a score=-3011.0 +s hg17.chrM 1536 9 + 16571 ----TACGCATTT +s mm5.chrM 954 9 + 16299 ----TAGACATCC +s rn3.chr7 48862769 9 - 143082968 ----TCAACATTT +s galGal2.chrM 2206 6 + 16775 -------CCCTCC +s danRer1.chrM 1905 9 + 16596 AGCACAGAC---- + +a score=856.0 +s hg17.chrM 1545 4 + 16571 ATAT +s panTro1.chr3 35463322 4 - 209662276 ATAT +s mm5.chrM 965 4 + 16299 TTAT +s rn3.chr7 48862779 2 - 143082968 --AT +s galGal2.chrM 2215 4 + 16775 CTAA + +a score=0.0 +s hg17.chrM 1546 3 + 16571 TAT + +a score=-583.0 +s hg17.chrM 1546 3 + 16571 TAT +s galGal2.chrM 2218 1 + 16775 A-- + +a score=94180.0 +s hg17.chrM 1549 256 + 16571 AGAGGAGACAAGTCGTAACATGGTAAGTGTACTGGAAAGTGCACTTGGACG--AACCAGAGTGTAGCT-TAA---CACAAAGCACCCAACTTA-----CACTTAGGAGAT-----TTCAA-------------CTTAACT--TGACCGCTCTGAGCTAAAC--CTAGCC-------CCAAACCCACTCCACCT---------TACTACCAG--ACAACC---TTAGCCAAACCATTTACCC---AAAT----AA---------AGTATAGGCGATAGAAAT---TGAAACCTGGCGCAATAGA----TATAGTACCGCAAGGGAAAGATGAAA +s panTro1.chr3 35463326 259 - 209662276 ACAGGAGATAAGTTGCAACATGGTAAGCATACTGGGAAGTGCGCTTGGACA--AACCAAAGTGTAGCT-TAA---ACCAAAGCATCCAGCTTA-----CACCTGGAAGAT-----TTCAT-------------TGTGACC--TGATCACTTTGAGCCAACT--CTAGCC-------CCAAACC---------TCGCTAAAAATACTATTAA--ACTATC---TTAATCAAACGATTTACCTTAGAAA-----AA---------AGTTTAGGCAACAGCAATTTTT--ACCCTGGTGCAATAGA----CATAGTATCATAAGGGAAAGATGAAA +s mm5.chrM 970 261 + 16299 AGAGGAGATAAGTCGTAACAAGGTAAGCATACTGGAAAGTGTGCTTGGAAT--AATCATAGTGTAGCT-TAA--TATTAAAGCATCTGGCCTA-----CACCCAGAAGAT-----TTCA----------------TGACCAATGAACACTCTGAACTAATC--CTAGCC-------CTAGCCC---------TACACAAA--TATAATTAT--ACTATTATATAAATCAAAACATTTATCCTACTA------AA---------AGTATTGGAGAAAGAAATTCGTACATCTAGGAGCTATAGA----ACTAGTACCGCAAGGGAAAGATGAAA +s rn3.chr7 48862782 248 - 143082968 GGAGGCGATGAGCTCTAACATGATAATCGTACTGGAAAGTGTGCTT--------ATCTTAGTATATCA-TAATTTTTAAAAGCATCTGGTCTACCCTCCCCCCAGAAG---------CA-----------------------TGTATGCTCTGAATCAACT--CTAGCA-------TAAAAAC-------CCTAAACTAAAATATATTT----ATTACT---TGAATTAAGTCATTTGGATTAATA------GA---------AATTTTGGTGAGAGAAACTTAT-TTTTTAGGCACTATGGA----AATGGCACCATCA-GGAAAGATGAAA +s canFam1.chrM 969 258 + 16727 AGAGGAGACAAGTCGTAACAAGGTAAGCATACCGGAAGGTGTGCTTGGATT--AATCAAAGTGTAGCT-TAA----CTAAAGCGTCTGGCCTA-----CACCCAGAAGAT-----TTCA----------------TTACTTATGGCCACTTTGAACAAAAG--CTAGCCCAA----CTAACCC---------CAAACTTAAGTATTACA----GACACA---TAAAATAAAACATTTAGTTAAACAAT---AAA---------AGTATAGGAGATAGAAATTTTA----ATTGGAGCGATAGA----GATAGTACCGTAAGGGAATGATGAAA +s galGal2.chrM 2219 281 + 16775 AGACGAGGCAAGTCGTAACAAGGTAAGTGTACCGGAAGGTGCACTTAGACT---ACCAAGGCGTAGCTATAA--CTTCAAAGCATTCAGCTTA-----CACCTGAAAGATACC--CTCAACAGACAAGGTCGCCTTGACT--TGCCCCCCCT-----------CTAGCCCGA----CAAACTC---------GTACCCTTAACATA-------AAAAAC---TTACCTCCCCCTCTTAACCAAAACATTATAAA--TTGTCCCAGTATAGGCGATAGAAAAGACT--ACCCCGGCGCAATAGAGGCTAACTGTACCGCAAGGGAAAGATGAAA +s danRer1.chrM 1915 285 + 16596 AGGGGGGAAAAGTCGTAACAAGGTAAGTGTACCGGAAGGTGCACTTGGACATTATCCAAGACGTGGCT-GAA--CAGTTAAGCATCTCACTTA-----CACCGAGAAAACATCCGTGCA-----------------AATC--GGATCGTCCTGAGCTAAATAGCTAGCTTAACCATCAAGATC---------AACTTAAAAACATCAATAACCTATAAT---CAACCTAAAACCACAAACTAAACCAT----TATATTATCCTAGTATGGGAGACAGAAAAGATA-AAATACTAAGCAATAGA----GAAAGTACCGCAAGGGAACGCTGAAA + +a score=152796.0 +s hg17.chrM 1805 245 + 16571 ------------AATTATAACCAAGCA-TAATATAGCAAGGACTAACCCCTATACCTTCTGCATAATGAATTAACTAGAAATAACTTTGCAAGGAGAGCCAAAGCTAAGACCCCCGAAA-CCAGACGAGCTACCTAAGAACAG----CTAAAA---GAGCACACCCGTCTATGTAGCAAAATAGTGGGAAGATTTATAGGTAGAGGCGACAAACCTACCGAGCCTGGTGATAGCTGGTTGTCCA-AGATA-GAATCTTAGTTCAACTT +s panTro1.chr3 35463586 243 - 209662276 ------------AACTATA-TCAAGCACTAAAA-AGCAAGGACAAGCCCTTATACTTTCTGCATAATGTATTAACTAGAAATA-CTTTACACAGAAAACTATAGCCAAGTCCCCCAAAA-CCAGATGAGCTACACAAGAATAG----CTGAAA---GAGCACACTCACCTACATGGCAAAATAGTGGGAAGATTCATGAGTAGTGGTGACAAGTCTACCAAGCCTGGTGATAGCTGGTTGTCCA-AGATA-GAATCTTAGTTCAACTT +s mm5.chrM 1232 245 + 16299 ------------ACTAATT-AAAAGTAAGAACA-AGCAAAGATTAAACCTTGTACCTTTTGCATAATGAACTAACTAGAAAACTTCTAACTAAAAGAATTACAGCTAGAAACCCCGAAA-CCAAACGAGCTACCTAAAAACAA----TTTTAT---GAATCAACTCGTCTATGTGGCAAAATAGTGAGAAGATTTTTAGGTAGAGGTGAAAAGCCTAACGAGCTTGGTGATAGCTGGTTACCCA-AAAAATGAATTTAAGTTCAATTT +s canFam1.chrM 1228 246 + 16727 ------------ACATCTT-AACAGTATTAAAC-AGCAAAGATTACCCCTTCTACCTTTTGCATAATGAACTAGCCAGAAACAACTTAACAAAGAGAACTTAAGCTAAGCTCCCCGAAA-CCAGACGAGCTACCCATAAACAAT---CTAAAA---GGATCAACTCATCTATGTAGCAAAATAGTGAGAAGATTTGTGGGTAGAGGTGAAAAGCCTAACGAGCCTGGTGATAGCTGGTTACCCACAGACA-GAATTTTAGTTCAACTT +s galGal2.chrM 2507 248 + 16775 ------------GAAAACC-ATAAGCAAAAAAC-AGCAAAGACCAACCCTTGTACCTTTTGCATCATGATTTAGCAAGAACAA-CCAAGCAAAGTGAGCTAAAGTTTGCCTTCCCGAAACCCAAGCGAGCTACTTGCGAGCAG----CTAAAATTTGAGCGAACCCGTCTCTGTTGCAAAAGAGCGGGATGACTTGCCAGTAGAGGTGAAAAGCCTACCGAGCTGGGTGATAGCTGGTTACCTG-TCAAACGAATCTAAGTTCCCCCT +s danRer1.chrM 2200 263 + 16596 GAGAAATGAAATAACCCGT-AAAAGCAATAAAA-AGCAAAGATTAAACCTTGTACCTTTTGCATCATGATTTAGCCAACACCA-CTAGGCAAAGAGACCTTTAGTTTAAAGCCCCGAAT-CCAGGTGAGCTACCCCGAGACAGCCTATTTAACTTAGGGCCAACCCGTCTCTGTGGCAATAGAGTGGGAAGAGCTCCGGGTAGAAGTGACAGACCTATCGAACCCGGCAATAGCTGGTTGTCTG-GGAGATGAATAAAAGTTCAGCTT + +a score=2454.0 +s hg17.chrM 2050 19 + 16571 TAAATTTGCCCACAGAA-------CC +s panTro1.chr3 35463829 17 - 209662276 TAAACTTACCCACAGAA--------- +s mm5.chrM 1477 17 + 16299 TAAACTTGCTAAAAAAA--------- +s canFam1.chrM 1474 17 + 16727 TAAATTTACCtaaaaaa--------- +s galGal2.chrM 2755 26 + 16775 TAACCCACCCCCTAAAGACACCCACC + +a score=-424.0 +s hg17.chrM 2069 37 + 16571 CT--CTAAATCCCCTTG---TAAATTTAACTGTTAGTCCAAA +s panTro1.chr3 35463846 38 - 209662276 -TTACTTAATTTCCCAG---TAAGTTTAACTGTCAGTCTAAA +s mm5.chrM 1494 38 + 16299 -CAACAAAATCAAAAAG---TAAGTTTAGATTATAGCCAAAA +s canFam1.chrM 1491 37 + 16727 --aataaaattttaatg---taaatttaaaatataGTCTAAG +s galGal2.chrM 2781 42 + 16775 TTTGTCAACCTTGAGAACGTTGGGGTTAAGAGCAATTCGATG +s danRer1.chrM 2499 37 + 16596 --CACAAAATTAAGAGA---AAAATACGAAAGTTAGTTAAAG + +a score=163719.0 +s hg17.chrM 2106 463 + 16571 GAGGAACAGCTCTTTGGACACTAGGAAAAAACCTTG-TAGAGAGAGTAA-----AAAAT--------------TTAACACCCATAGTAGGCCTAAAAGCAGCCACCAAT-TAAGAAAGCGTTCAAGCTCA---ACACCCA-CTACCTAAAA----AATCCCAAACATATA----AC-TGAACTCCT-CAC--ACCCAATTGGACCAATCTATCACCCTATAGAAGAACTAATGTTAGTATAAGTAA-CATGAA-AAC------ATTCTCCT-CCGCATAAGCCTGCGTCAGATCAAAACACTGA---ACTGACAATTAA-CAG-----------------CCCAATATCTACAATCAAC-----CAACAAGTCATTATTACCCT--------CACTGTCAACCCAACACAGGCATGCTCATAAGGAAAGGTTAAAAAAAGTAAAAGGAACTCGGCAAAC-CTTACCCCGCCTGTTTACCAAAAACATCACCTCTAGC--ATCACCAGTATTAGAGGCACCGCCTGCCCAGTGACAC---ATGTTTAACG +s panTro1.chr3 35463884 464 - 209662276 GAGGGACAGCTCTTTAGACCCTAGGAAGCAACCTTCCTACAGAGAGTAA-----AAAATA-------------TTACCACC-ATAGTTGGCCCAAAAGCAACCACCAGT-TAAGAAAGCATTTAAGCTCA---ACATCTAACTATCTTAAATTCTAATC----------ACTCTAC-TGTACTCCT-AAC--ATCACATTGGACTAATCTATTACTTAATAGAAGCAATAATGTTAATATAAGTAA-CATGAA-GAC------ATTCTCCA-TTGCATAAGCTTACATCAGACCAGAATA---ACCCACTGGCAGTTAA-CAG-----------------CCTAATATT---AATAAAC-GATATAATAAGT-------ACCCTATTATTTACACTGTTAACTCAACAAAGGCATGCTC-TAAGGAAAGTTTACAACAAGTAAAAGGAACTCAGCAAAT-CTTACCCTGCCTGTTTACCAAAAACATCACCTCTAGC--ATTACCAGTATTAGAGGCACTGCCTGCCCAGTGACAT---ATGTTCAACT +s mm5.chrM 1532 472 + 16299 GAGGGACAGCTCTTCTGGAAC--GGAAAAAACCTTT-AATAGTGAATAATTAACAAAACA-----------GCTTTTAACC-ATTGTAGGCCTAAAAGCAGCCACCAAT-AAAGAAAGCGTTCAAGCTCA---ACATAAA---ATTTCAAT---TAATTCCATAATTTAC----AC-CAACTTCCTAAAC--TTAAAATTGGGTTAATCTATAACTTTATAGATGCAACACTGTTAGTATGAGTAA-CAAGAA-TTCC----AATTCTCCA--GGCATACGCGTATAACAACTCGGAT-----AACCATTGTTAGTTAATCAG-----------------ACTATAGGC---AATAATC--ACACTATAAATAATC---CACCTATAACTT-CTCTGTTAACCCAACACCGGAATGCCT-AAAGGAAAGATCCAAAAAGATAAAAGGAACTCGGCAAACAAGAACCCCGCCTGTTTACCAAAAACATCACCTCTAGC--ATTACAAGTATTAGAGGCACTGCCTGCCCAGTGACTA---AAGTTTAACG +s rn3.chr6 55165806 419 + 147642806 GAAGGGCAGCTCTTTCTAA--TAGGAAATAACTTTA-ATTAGAGAATAA-----AAAAAA----------------------ACAG---------------------------ATATGCATTCAAGGTCA---ACAAACA---ATTTAGAA-----TTCCAGTATTCATG----AG-TAACTTCCTAAAT--TACATATTGGCTTAATCTATAAGGTAGCAGATAAAATTTTATTAAAATTAGTAA-TAAGAA-GAA------ACTCTTCA--TGTGTGAGAACACTTCAAATCAAAT-----ACCCACTGATAATTAAAATG-----------------CCTAGAGAT---AA-------ATTTAATAACACACT---TCTATTTAATT--TATTGTCAACCCTATACAAGAACACAC--AGGGAAAGATTAAAAGAAATGAAAGGAAGTTGGCAATC-AAGAACCCACCTATTCACCAGAAGAGTCTCCTTTGGG--ATTGATAGTATTAGAGGCGCTATATTCCCAGGGTCAG---ACGCTAAATG +s canFam1.chrM 1528 466 + 16727 AAGGTACAGCTTCTTAGAATC-AGGATACAACCTTT-ATTAGAGAGTAT-----ATACTA-------------ATATCACC-ATAGTTGGCTTAAAAGCAGCCACCAAT-TGAGAAAGCGTTCCAGCTCA---ACAAACA---ATATAACT---TAATCCCAACCATACT----ACATCAACTCCT-AATTATACCCCCTGGGTCATTCTATTTAAGTATAGAAGCAATAATGCTAGTATGAGTAA-CAAGAACCAT------TTTCTCCC--CGCATAAGCTTATATCAGGAACGGATA---GACCACTGATAGTTAA-CAA-----------------TCTGATAAT---ATCAACC-----CAAAAATGAAAT---ACTTATCCACCC-CATTGTTAACCCAACACAGGTATGCATTCAAGGAAAGATTAAAAGGAGTAAAAGGAACTCGGCAAACACAAACCCCGCCTGTTTACCAAAAACATCACCTCCAGC--ATTTCTAGTATTGGAGGCACTGCCTGCCCGGTGACAC---TTGTTTAACG +s galGal2.chrM 2823 453 + 16775 GGGGTACAGCTCCATCGAAAA-AGAACACAACCTCC-TCCAGCGGATAA-----TAATCAC----------CCCTCCCCGC-ACTGTGGGCCTTCAAGCAGCCACCAACAAAAGAGTGCGTCAAAGCTC---------CC---TCATTAAA----AAATCTAAAACCCTA----TT-TGACTCCCTCAAC----CAAAGCAGGTTAACCTATGAC--AATAGAAGAATCAATGCTAAAATGAGTAATCTGGAA-CCT------ATCCTCCTACGGCGTAAACTTACATTA-------------ATACATT----ATTAA-CAG-----------------AACTCAACT---TATACCCCCACACTAACAAGCAAT---ACGTATTCCTCA-ATCTGTTAAGCCAACCCAGGAGCGCCC--ACAGGATGATTAAAACCTACAGAAGGAACTCGGCAAACCAAAGACCCGACTGTTTCCCAAAAACATAGCCTTCAGCTAACAACAAGTATTGAAGGTGATGCCTGCCCAGTGACCCCCAAAGTTCAACG +s danRer1.chrM 2536 494 + 16596 AGGGTACAGCCCCTTTAACAA-AGGATACAACCTTT-TCAGGAGAATAA-----AGATCATAATTTACAAAACACGTTGTC-GTAGTGGGCCTGGAAGCAGCCACCTAA-AAAGAAAGCGTTAAAGCTCAGGTAAGAAGA---AATTCATA----ATTCTGACAATAATA----TC-TTACTTCCCTAAA----AATACCAGACTAATCCATACAAATATGGAAGAAATTATGCTAAAATGAGTAA-CAAGAA-GAACCTGTACTTCTCCA--AGCACAAGTGTAAGCCAAGTTGGACA----AACCATTGGCAATTAA-CGAGCCCAAACAAAGAGGGCAATGTGAGT---TAAAAAC--TGAGAAAAATCCACA---ACAGA--------CATCGTTACCCCCACACTGGAGTGCATATAAGGAAAGACTAAAAGAAAGGGAAGGAACTCGGCAAACACAAGCCTCGCCTGTTTACCAAAAACATCGCCTCCTGA--CATCCCAATATAGGAGGTCCAGCCTGCCCAGTGACAA---TAGTTTAACG + +a score=23403.0 +s hg17.chrM 2569 19 + 16571 GCCGCGGTACCCTAACCGT +s panTro1.chr3 35464348 19 - 209662276 GCCACGGTATCCTGACCAT +s mm5.chrM 2004 19 + 16299 GCCGCGGTATCCTGACCGT +s canFam1.chrM 1994 19 + 16727 GCCGCGGTATCCTGACCGT +s galGal2.chrM 3276 19 + 16775 GCCGCGGTATCCTAACCGT +s danRer1.chrM 3030 19 + 16596 GCCGCGGTATTTTGACCGT + +a score=421032.0 +s hg17.chrM 2588 571 + 16571 GCAAAGGTAGCATAATCACTTGTTCCTTAAATAGGGACCTGTATGAATGGCTCCACGAGGGTTCAGCTGTCTCTTACTTTTAACCAGTGAAATTGACCTGCCCGTGAAGAGGCGGGCATGACACAG-CAAGACGAGAAGACCCTATGGAGCTTTAATTTATTAATGCAAA-CAGTACCT--AACAAACC---CACAGGTCCTAAACT---ACCAAA--CCTGCATTAAAAATTTCGGTTGGGGCGACCTCGGAGCAGAACCCAACCTCCGAGCAGTACATGCTAAGACTT--CACCAG------------------TCAAAGC-GAACTACTATACTC---------AATTGATCCA---AT-A-A--CTTGACCAACGGAACAAGTTACCCTAGGGATAACAGCGCAATCCTATTCTAGAGTCCATATCAACAA-TAGGGTTTACGACCTCGATGTTGGATCAGGACATCCCGATGGTGCAGCCGCTATTAAAGGTTCGTTTGTTCAACGATTAA-AGTCCTACGTGATCTGAGTTCAGACCGGAGTAATCCAGGTCGGTTTCT-ATCTACT--TCAAATTCCTCCCTGTACGAAAGGACAAGAGAAATAAGGCC---------------------------------------------TACTTCACA +s panTro1.chr3 35464367 568 - 209662276 GCAAAGGTAGCATAATCACTTGTTCCCTAAATAGGGACTTGTACGAATTGCTACACGAGGGTTCAGCTGTCTCTTACTTTTAATCAGTGAAATTGACCTATCAGTGAAGAGGTGGATATAAAAAAAATAAGACGAGAAGACCCTATGGAGCTTTAATTCATTAATACAAA-TAAAAACTCAAACAAGCC---AACAGGCCCTAGCCT---ACTATC--CCTGCATTAAAAATGTTGTTTGGGGTGACCCCGGAGCATAATTCAACCTCTGAACGATGTAAACTAAGACCG--CACTAG------------------TCTAAGC-GAGTTAACATAC------------GTTGACTCA---ATTA-A--TTTGATGAGCGGAATAAGTTATCCTAGGGATAACAGCACAATCCTATTCTACAGTCCATGTCAACAA-TAGTGTTTATGACCTCAATGTTGGATCAGGACATCCTAATGGTGCAGCTGCTATTAAGGGTTTGTTTCTTCAGTGATTAA-AGTCCTACCTGATCTGAGGTCAGACTGGAGTAATCCAGGTTGGTTTCT-AACTATT--TAACATTTCTCCTAGTACAAAAGGACAA----AATAGTGCC---------------------------------------------CACTTCATA +s mm5.chrM 2023 575 + 16299 GCAAAGGTAGCATAATCACTTGTTCCTTAATTAGGGACTAGCATGAACGGCTAAACGAGGGTCCAACTGTCTCTTATCTTTAATCAGTGAAATTGACCTTTCAGTGAAGAGGCTGAAATATAATAA-TAAGACGAGAAGACCCTATGGAGCTTAAATTATATAACTTATC-TATTTAATTTATTAAACC---TAATGGCCCAAAA-----ACTATAG-TATAAGTTTGAAATTTCGGTTGGGGTGACCTCGGAGAATAAAAAATCCTCCGAATGATTATAACCTAGACTT---ACAAG------------------TCAAAGTAAAATCAACATATCT---------TATTGACCCAGATAT-A-T--TTTGATCAACGGACCAAGTTACCCTAGGGATAACAGCGCAATCCTATTTAAGAGTTCATATCGACAATTAGGGTTTACGACCTCGATGTTGGATCAGGACATCCCAATGGTGTAGAAGCTATTAATGGTTCGTTTGTTCAACGATTAA-AGTCCTACGTGATCTGAGTTCAGACCGGAGCAATCCAGGTCGGTTTCT-ATCTATT--TACGATTTCTCCCAGTACGAAAGGACAAGAGAAATAGAGCC----------------------------------------------ACCTTACA +s rn3.chr3 85357956 538 - 170969371 GCATATATAAAATAATGTCTTG-TCTCTAAATAAGGGATTGAATGAATGTCCACACCAGACTTTTATTGCCAATTACTTCTAATCAGTGAAATTGACTTTCCTATGAAAAGAAAGTAATAAATACA-TAAGATGTGAAA------------CTTAATCTATTAGTTCAAT-AAAAAAATT-AATTACCT---TAAGGGACTAAAA-----ATCATGA-TCTAAATTACTAATTTTGTTTAGGGTGAGCTCAGGATATAAATAAATGTCTATATGGC-CAAGCACAGACTC--ACTCTG------------------TCACAAT-AAACACTTTTATTT----------ATTGACCCA---GA-A-A--TTTGATCTACGGGATAAATTATTTTAGGACCAACCCCAC-ATTCTATTGTGTGGTTTATGATCATAG-TCAGGTTTATGATTCCAGTGTTAAATCAAGATGCCCTAACTGTGTAACA--TAATAAAGTTTGATTGCTACA------AA-AGTCCCATGGGGTCTGAGTTCACATTGCA-----CCAGGTT--TCTCTAATCTATA--TTGTTTTTGTCAGAATACAAAGGGGAAA---AAAAGAGGTC---------------------------------------------CAGTTTACA +s canFam1.chrM 2013 578 + 16727 GCAAAGGTAGCATAATCATTTGTTCTCTAAATAGGGACTTGTATGAATGGCCACACGAGGGTTTAACTGTCTCTTACTCCCAATCAGTGAAATTGACCTTCCCGTGAAGAGGCGGGAATACCACAA-TAAGACGAGAAGACCCTATGGAGCTTTAATTAACTAACCCAAACTTATGGATACTAGATACC---TACAAGGCATAACATAACACCATTATTATGAGTTAGCAATTTAGGTTGGGGTGACCTCGGAATATAAAAAAACTCCCGAGTGATTAAAATTTAGACCC---ACAAG------------------TCAAAAT-ACAACATCACTT------------ATTGATCCA---AT-A-ATTTTTGATCAACGGAACAAGTTACCCTAGGGATAACAGCGCAATCCTATTCAAGAGTCCATATCGACAA-TAGGGTTTACGACCTCGATGTTGGATCAGGACATCCTAATGGTGCAGCAGCTATTAAGGGTTCGTTTGTTCAACGATTAA-AGTCCTACGTGATCTGAGTTCAGACCGGAGTAATCCAGGTCGGTTTCT-ATCTATT-ATACAACCTCCCCCAGTACGAAAGGACAAGGGATGTAAGGCC---------------------------------------------TACCTCACA +s galGal2.chrM 3295 630 + 16775 GCGAAGGTAGCGCAATCAATTGTCCCGTAAATTGAGACTTGTATGAATGGCTAAACGAGGTCTTAACTGTCTCCTGTAGGTAATCTATGAAATTAGTATTCCCGTGCAAAAACGAGAATGTGAACA-TAAGACGAGAAGACCCTGTGGAACTTTAAAATCACGACCACCT-TACAACCTTACACAGCCC---CACTGGGTCCACCCACACATAAACC-CCTGGTCGACATTTTTCGGTTGGGGCGACCTTGGAGAAAAAAAAATCCTCCAAAC-CCACAGACCACAACTC---TTCAC------------------TAAGACC-AACTCCTCAAAGTACCAACAGTAACCAGACCCA---AT-ATA--ATTGAGCAATGGACCAAGCTACCCCAGGGATAACAGCGCAATCTCCTCCAAGAGCCCATATCGACAA-GGAGGTTTACGACCTCGATGTTGGATCAGGACAACCTAATGGTGCAACCGCTATTAAGGGTTCGTTTGTTCAACGATTAACAGTCCTACGTGATCTGAGTTCAGACCGGAGCAATCCAGGTCGGTTTCT-ATCTATG---GACACTCCTCCTAGTACGAAAGGACCGGAGAAGTGGGGTCAATACCACTGAGCACACCCCAACCTTCTAAGCAATGAATACAACTCAACTGCCA +s danRer1.chrM 3049 597 + 16596 GCAAAGGTAGCGCAATCACTCGTCCTTTAAATAGGGACCTGTATGAATGGCCAAACGAGGGCTTAACTGTCTCCCCCATCAAGTCAGTGAAATTGATCTATCCGTGCAGAAGCGGATATAATAATA-CAAGACGAGAAGACCCTTTGGAGCTTAAGGTACAAGATTTAAT-T--TACATCAAGCAAACCAATAAAAGTGATTAAACT---AGTAAAA-GATAAACCTCTACCTTCGGTTGGGGCGACCACGGAGTAAAAAACAACCTCCAAGCGGAACGGGCACAGCCCTAAAACCAAGAGAAACATCTCTAAGCCTCAGAAC-ACCTGACCAAAGAC---------GATCCGGCCT---AT-A-A--GCCGATCAACGAACCAAGTTACCCTAGGGATAACAGCGCAATCCTCTCTAAGAGTCCATATCGACGA-GGGGGTTTACGACCTCGATGTTGGATCAGGACATCCTAATGGTGCAGCCGCTATTAAGGGTTCGTTTGTTCAACGATTAATAGTCCTACGTGATCTGAGTTCAGACCGGAGTAATCCAGGTCAGTTTCT-ATCTGTAAAGCTATTTTTTCCTAGTACGAAAGGATCGGAAAAAGGGGGCC---------------------------------------------CATACTAA- + +a score=-368.0 +s hg17.chrM 3159 14 + 16571 AAGCGCCTTC--CCCC +s panTro1.chr3 35464935 15 - 209662276 AAGCACCCTC-GCCTC +s mm5.chrM 2601 16 + 16299 AAGCGCTCTCAACTTA +s canFam1.chrM 2592 16 + 16727 AGGCGCCTTAAAACTA +s galGal2.chrM 3925 14 + 16775 AGAACCCCTC--CCCC +s danRer1.chrM 3646 14 + 16596 AAGCACGCCCCACC-- + +a score=2194.0 +s hg17.chrM 3173 6 + 16571 GTAAAT +s panTro1.chr3 35464950 6 - 209662276 ATAAAT +s mm5.chrM 2617 6 + 16299 ATTTAT +s canFam1.chrM 2608 6 + 16727 ATAGAT +s danRer1.chrM 3660 6 + 16596 CTAAAT + +a score=1283.0 +s hg17.chrM 3179 12 + 16571 G-ATATCATCTCA +s panTro1.chr3 35464956 12 - 209662276 G-ATGCTATCTCA +s mm5.chrM 2623 13 + 16299 GAATAAAATCTAA +s canFam1.chrM 2614 12 + 16727 G-AAGTCAACTCA + +a score=-632.0 +s hg17.chrM 3191 15 + 16571 ----ACTTAGTATTATACC +s mm5.chrM 2636 14 + 16299 ----ATAAAATAT-ATACG +s canFam1.chrM 2626 18 + 16727 ATCTAACCAGTTT-ATCTC + +a score=3123.0 +s hg17.chrM 3206 21 + 16571 CACACCC---ACCCAAGAACAGGG +s panTro1.chr3 35464984 22 - 209662276 CACACCC--TACCCAGGAACAGGG +s mm5.chrM 2650 24 + 16299 TACACCCTCTAACCTAGAGAAGGT +s canFam1.chrM 2644 21 + 16727 CTCATAA---GCCCGAGAAAAGGG + +a score=273.0 +s hg17.chrM 3227 1 + 16571 T +s panTro1.chr3 35465006 1 - 209662276 T +s mm5.chrM 2674 1 + 16299 T + +a score=6671.0 +s hg17.chrM 3228 83 + 16571 TTgttaagatggcagagcccggtaatcgcataaaacttaaaactttacagtcagaggttcaattcctcttcttaacaacaTAC +s panTro1.chr3 35465007 83 - 209662276 TTgttaagatggcagagcctggtaattgcataaaacttaaaattttataatcagaggttcaactccttttcttaacaATATGC + +a score=300.0 +s hg17.chrM 3311 1 + 16571 C +s panTro1.chr3 35465090 1 - 209662276 C +s galGal2.chrM 4062 1 + 16775 C + +a score=699.0 +s hg17.chrM 3312 5 + 16571 CATGG +s panTro1.chr3 35465091 5 - 209662276 TATAA +s galGal2.chrM 4063 5 + 16775 CCTAA +s danRer1.chrM 3825 5 + 16596 CTTAA + +a score=2951.0 +s hg17.chrM 3317 8 + 16571 CCAACCTC +s panTro1.chr3 35465096 8 - 209662276 TTAACCTT +s mm5.chrM 2760 8 + 16299 TTAATATC +s galGal2.chrM 4068 8 + 16775 CAAACCTT +s danRer1.chrM 3830 8 + 16596 TTAACCCC + +a score=2100.0 +s hg17.chrM 3325 5 + 16571 CTACT +s panTro1.chr3 35465104 5 - 209662276 CTCCT +s mm5.chrM 2768 5 + 16299 CTAAC +s rn3.chr3 129984747 5 + 170969371 CTTCT +s galGal2.chrM 4076 5 + 16775 CTAAT +s danRer1.chrM 3838 5 + 16596 CTAGC + +a score=142225.0 +s hg17.chrM 3330 184 + 16571 CCTCATTGTACCCATTCTAATCGCAATGGCATTCCTAATGCTTACCGAACGAAAAATTCTAGGCTATATACAACTACGCAAAGGCCCCAACGTTGTAGGCCCCTACGGGCTACTACAACCCTTCGCTGACGCCATAAAACTCTTCACCAAAGAGCCCCTAAAACCCGCCACATCTACCATCACC +s panTro1.chr3 35465109 183 - 209662276 ACTTATTATCCCCACTCTTATTGCTATAGCATTCCTTACACTCATCGAATGAAAAATCTTAGGCTATACACAACTATGCAAAGACCCAAA-ATTGTAGGTCCCTATGGGCTGCTTCAGCCATTCGCTGATGGAATAAAACTTTTCACCAAAGAACCCTTACGGCCCTCAACATCCACTATTACC +s mm5.chrM 2773 184 + 16299 ACTCCTCGTCCCCATTCTAATCGCCATAGCCTTCCTAACATTAGTAGAACGCAAAATCTTAGGGTACATACAACTACGAAAAGGCCCTAACATTGTTGGTCCATACGGCATTTTACAACCATTTGCAGACGCCATAAAATTATTTATAAAAGAACCAATACGCCCTTTAACAACCTCTATATCC +s rn3.chr3 129984752 171 + 170969371 ATTAATTATCTCCATTTTCATCACTATAGCATTTCTAACTTCTTTTGAATGGAAAAGAATAGGTAATATGTGATTATTAGAAGAACCACGCATTGTAGATCTCCATGGTTTCTTTTAACAACTTCCTGGTGATGTAAAACTTTTCATCAAAGCAACCTTATATCCATTAAC------------- +s canFam1.chrM 2769 184 + 16727 TCTTATTATCCCAATCCTTCTTGCCGTAGCCTTCCTCACCCTCGTTGAACGAAAAGTCTTAGGCTATATACAACTTCGAAAAGGACCTAATATTGTAGGCCCCTACGGCCTCCTTCAACCAATCGCAGACGCAGTAAAACTCTTCACAAAAGAACCTCTACGACCACTTACATCCTCTATATCA +s galGal2.chrM 4093 184 + 16775 CTATATTCTCCCCATCCTAATCGCCGTGGCCTTCTTAACACTTGTAGAACGAAAAATCCTAAGCTACATGCAGGCCCGAAAGGGCCCAAACATTGTGGGCCCTTTTGGTCTACTCCAACCCGTTGCAGACGGGGTAAAACTATTCATTAAAGAGCCAATCCGACCATCTACCTCCTCCCCCTTC +s danRer1.chrM 3843 184 + 16596 CTACGCCGTACCAGTATTAATTGCAGTAGCCTTCCTTACCTTAGTTGAACGAAAAGTGTTAGGCTATATACAACTCCGAAAAGGACCAAATGTAATAGGCCCCCGAGGACTGTTACAATCAGTAGCTGATGGCGTGAAACTTTTTATTAAAGAACCCATTCGACCATCTATGGCTTCTCCAATT + +a score=563983.0 +s hg17.chrM 3514 816 + 16571 CTCTACATCACCGCCCCGACCTTAGCTCTCACCATCGCTCTTCTACTATGAACCCC-CCTCCCCATACCCAACCCCCTGGTCAACCTCAACCTAGGCCTCCTATTTATTCTAGCCACCTCTAGCCTAGCCGTTTACTCAATCCTCTGATCAGGGTGAGCATCAAACTCAAACTACGCCCTGATCGGCGCACTGCGAGCAGTAGCCCAAACAATCTCATATGAAGTCACCCTAGCCATCATTCTACTATCAACATTACTAATAAGTGGCTCCTTTAACCTCTCCACCCTTATCACAACACAAGAACACCTCTGATTACTCCTGCCATCATGACCCTTGGCCATAATATGATTTATCTCCACACTAGCAGAGACCAACCGAACCCCCTTCGACCTTGCCGAAGGGGAGTCCGAACTAGTCTCAGGCTTCAACATCGAATACGCCGCAGGCCCCTTCGCCCTATTCTTCATAGCCGAATACACAAAC-ATTATTATAATAAACACCCTCACCACTACAATCTTCCTAGGAACA---------ACATATGACGCACTCTCCCCTGAACTCTACACAACATATTTTGTCACCAAGACCCTACTTCTAACCTCCCTGTTCTTATGAATTCGAACAGCATACCCCCGATTCCGCTACGACCAACTCATACACCTCCTATGAAA----AAACTTCCTACCACTCACCCTAGCATTACTT--ATATGATATGTCTCCATACCCATTACAATCTCCAGCATTCCCCCTCAAACCTA-----AGAAATATGTCTGA---TAAAAGAGTTACTTTGATAGAGTAAATAATAGGAG-----------------------------------------------------------------------CTTAAACCCCC------TTATTTc +s panTro1.chr3 35465292 811 - 209662276 CTTTATATTATTGCTTCAACACTAGCCCTTTCCATTGCTCTCCTTTTATGAACTCC-CCTCCCTATACCAGATCGTCTAATTAATTTTAATATAGGCCTCCTATTTATACTAGCAACATCAAGCCAGGCTGTCTACTCTAT-----GATCAGAATGAGCATCAAATTCAAAATATGCACTGATCAGTGCATTACGAGCTGTGGCCCAGACAATTTCATGTAAGGTCACCCTAGCCATTATCCTGCTATCAGTTCTACTGATAAGCGGCTCATTTAACTTATACACACTCATCACAATGCAAGAATTCCTCTGACTGCTCCTACCATCGTGGCCTCTAGCCATAATATGATTCATCTCCACTCTAGCAGAAACTAACCAAGCACCTTTTGATCTAGCAGAAGGAGAGTCAGAGTTAGTCTCAGGCTTCAACATTGAATACGCCACAAGGTCATTTGCCCTCTTCTTTATAGCAGAATATATGAAT-ATTATCATAATAAATGCCCTAACTACTACTATTTTCCTAGGAGCACTACACACTATATAT---------TTACCAGAACTGTACACCACAAATTTCATTACCAAGACCCTTCTTTTAACCACTCTATTTTTATGAATTCGAATGGCATACACTCGATTCCACTATGACCAACTCATACATCTTTTATGAAA----AAACTTCCTACCACTTATGCTAGCATT--TTGCATATGATATATCTCAATGCTTGTCCTAATTTCCAGCATCCCACCCCAAACATA-----GGAAATATGTCAGA---CAAAAGAATTACTTTGATAGAGTAAACAATAGAGG-----------------------------------------------------------------------TTAAAATCCTC------TAATTTc +s mm5.chrM 2957 815 + 16299 TTATTTATTATTGCACCTACCCTATCACTCACACTAGCATTAAGTCTATGAGTTCC-CCTACCAATACCACACCCATTAATTAATTTAAACCTAGGGATTTTATTTATTTTAGCAACATCTAGCCTATCAGTTTACTCCATTCTATGATCAGGATGAGCCTCAAACTCCAAATACTCACTATTCGGAGCTTTACGAGCCGTAGCCCAAACAATTTCATATGAAGTAACCATAGCTATTATCCTTTTATCAGTTCTATTAATAAATGGATCCTACTCTCTACAAACACTTATTACAACCCAAGAACACATATGATTACTTCTGCCAGCCTGACCCATAGCCATAATATGATTTATCTCAACCCTAGCAGAAACAAACCGGGCCCCCTTCGACCTGACAGAAGGAGAATCAGAATTAGTATCAGGGTTTAACGTAGAATACGCAGCCGGCCCATTCGCGTTATTCTTTATAGCAGAGTACACTAAC-ATTATTCTAATAAACGCCCTAACAACTATTATCTTCCTAGGACCCCTATACTATATCAAT---------TTACCAGAACTCTACTCAACTAACTTCATAATAGAAGCTCTACTACTATCATCAACATTCCTATGGATCCGAGCATCTTATCCACGCTTCCGTTACGATCAACTTATACATCTTCTATGAAA----AAACTTTCTACCCCTAACACTAGCATTATGT--ATGTGACATATTTCTTTACCAATTTTTACAGCGGGAGTACCACCATACATATA------GAAATATGTCTGA---TAAAAGAATTACTTTGATAGAGTAAATTATAGAGG-----------------------------------------------------------------------TTCAAGCCCTC------TTATTTC +s rn3.chr17 3179538 758 + 97307196 CTTTTTATCATTGCCCCAACCCCACCCCTCACTGTAGCACT----CTATGGATTCCATCTTTTTACCGCTCAATCCCTAACAAACATAGACCATGCGAT----TTTGTTCTAGCTACTTGGAGCCCATCAGTCGACTCGGTTTTATGACTGGAGTGAGTTTCAGCTCCTAAATTCGCAA-GAGTGGAGCCTCCTGAGCTGTAGTTCAGGC----TCAC-TGGAGTAACACTGGTTGCCATTC---TATCAAGTCGACTAATAAACGGACCGCTTACCCCACAGACACTGATTTATACCCAAGCGCATGTATTATTACTTCCACCGAGATGACCCC-AGCCACAATGTGATTCATCTCTCCACTAGCAGAAACCAATAGGACAGTGTTTGACCTAACAAAA------------TTAATACCA---TCCTACATTGGATATACTGCAGGACCATTTACTCTA-TCTTTATGTTGAAGCACACTACCAATTACTGTAATCAATACCCAAATACCCATACCTCCCTTAGAAGTATTGTATGATACCCTC---------CCTCCAGAAATTTTTATAAT---TTTTATAGTTAGAACTTTGCTTCTCACCACTACAGTTTTATAAAATTGAGCGTCTTTCCCTTAATTTTGACATAACCAACTAGTACATTTGTCATGAAGTAATAAACTTTCT--------------------GT--GTGAGACCAATTTCCATCTCTATTTTTATATC---AACCCTCCTCTATGCATA-------GAACACATCTAG---TAAAGG--TTAGTATGGTGTAATAAACAATAGATG-----------------------------------------------------------------------TTTAGTCTGTC------TTATTTC +s canFam1.chrM 2953 816 + 16727 ATATTCATCCTAGCCCCCATTCTAGCTCTATCACTAGCCCTAACTATGTGAATTCC-CCTCCCAATACCCTACCCACTCATTAATATAAACTTGGGAGTCCTATTCATACTAGCAATATCAAGCCTCGCCGTGTACTCCATCCTCTGATCAGGATGAGCCTCAAACTCCAAATACGCCCTAATCGGAGCCCTTCGAGCAGTAGCTCAAACAATCTCATATGAAGTAACGCTAGCAATTATTCTTCTATCAGTCCTCCTAATAAACGGGTCATTTACACTATCCACGCTAATTATTACCCAAGAACATATATGATTAATCTTTCCGGCCTGACCCCTAGCCATGATATGATTCATCTCTACCCTAGCAGAAACTAATCGAGCCCCCTTCGACTTAACTGAAGGAGAATCCGAACTAGTCTCTGGATTTAACGTAGAGTATGCAGCAGGTCCTTTCGCCCTATTCTTTCTAGCAGAGTACGCAAAT-ATTATTATAATAAACATCCTCACAACAATTCTGTTCTTCGGCGCATTCCACAACCCATTC---------ATACCAGAACTCTACTCTATTAACTTCACTATAAAAACCCTCTTATTAACCATCTGCTTCCTATGAATTCGAGCATCATACCCTCGATTCCGCTACGATCAGTTAATACACTTATTATGAAA----AAATTTTCTACCCTTAACTTTAGCCCTATGC--ATATGACATGTTGCCTTACCCATTATCACCGCAAGTATCCCACCCCAAACATA-----AGAAATATGTCTGA---TAAAAGAGTTACTTTGATAGAGTAAATAATAGAGG-----------------------------------------------------------------------TTTAAATCCTC------TTATTTc +s galGal2.chrM 4277 892 + 16775 CTCTTCATTATTACTCCAATCCTAGCACTACTCCTAGCCCTGACTATTTGAGTCCC-CCTCCCACTACCATTCCCCCTTGCAGACCTCAACCTAGGACTACTATTTCTCCTAGCCATATCAAGCCTAACTGTCTACTCTCTACTCTGATCCGGATGAGCATCAAACTCCAAGTATGCCCTAATCGGAGCCCTTCGAGCCGTCGCACAAACAATCTCATACGAAGTCACCCTAGCCATCATCCTGTTATCCACAATCATACTGAGCGGCAATTACACCTTAAGCACCCTGGCCATCACCCAAGAGCCCATCTACCTCATTTTTTCCGCATGACCCCTCGCAATAATATGATACATCTCTACCCTTGCTGAAACCAACCGCGCCCCATTTGACCTAACAGAAGGAGAGTCAGAGCTAGTCTCAGGATTTAATGTAGAATATGCCGCCGGACCATTCGCCATATTCTTCTTAGCCGAATACGCCAAC-ATTATACTAATAAACACACTAACCACCGTCCTATTCCTGAACCCAAGCTTCCTAAATCTC---------CCACCAGAATTATTTCCCATTGCACTCGCTACAAAAACCCTCCTCCTTTCATCCTCATTTCTATGAATCCGGGCCTCATATCCACGGTTCCGCTATGACCAACTAATACATCTTCTATGAAA----AAACTTCCTCCCCCTAACCCTAGCCTTATGC--CTCTGACATACCAGCATACCAATCAGCTACGCCGGCCTCC--CCCCAATCTAA-----GGAAGCGTGCCTGAAC-AAAAAGGATCACTATGATAAAGTGAAC-ATAGAGGTATAACAACCCTCTCACTTCCTTAATCCTAGAAAAGTAGGAATCGAACCTACACAGAAGAGATCAAAACTCTTCATACTCCCTCTATATTATTTT +s danRer1.chrM 4027 824 + 16596 TTATTTTTAACAGCTCCAGTTCTTGCACTAATCCTAGCAATAATGCTATGGGCACC-CATACCCATGCCCTATCCAGTACTCGACCTAAATCTTGGAATTTTATTTATTATAGCCATCTCAAGCCTAGCAGTATACTCAATCCTGGGATCAGGTTGAGCATCAAACTCAAAATACGCATTAATTGGGGCCTTACGAGCTGTAGCGCAAACAATTTCATATGAAGTTAGCCTAGGACTTATTCTATTATCTGCCGTTATTTTTTCTGGGGGATACACCCTACAAACATTTAATACAACTCAGGAAGACACATGACTTCTACTTCCACTATGACCATTAGCCATTATATGATTTATCTCAACGCTGGCAGAAACAAACCGAGCACCGTTCGATCTTACAGAGGGGGAATCAGAACTAGTCTCAGGCTTCAATGTAGAGTATGCAGCAGGACCATTTGCCTTATTCTTTTTGGCTGAGTACTCAAAT-ATTTTACTAATAAACACCCACTCAACAGTACTATTTTTAGGAGCATCGTTTACCCCAGAT---------GCACCTGAGCTAATAACAATCAGTATTGCAACCAAAACTGCAATACTATCTATTTTGTTTCTCTGAATACGAGCATCATACCCACGATTCCGATACGACCAACTTATGCATCTTATCTGGAA----AAACTTTCTTCCAATCACATTAGTTCTAGTA--CTATGACATATCGCCCTACCAATCGCACTAGCTGGTCTACCCCCACAAACATAACTCAAGAACCGTGCCCGAATGCTAAGGGGTCACTTTGATGGAGTGAACCATAGGGG-----------------------------------------------------------------------TTAAAATCCCC------TCGGTTC + +a score=0.0 +s hg17.chrM 4330 71 + 16571 taggactatgagaatcgaacccatccctgagaatccaaaattctccgtgccacctatcacaccccatccta + +a score=15771.0 +s hg17.chrM 4330 70 + 16571 taggactatgagaatcgaacccatccctgagaatccaaaattctccgtgccaccta--tcacaccccatcct +s panTro1.chr3 35466103 70 - 209662276 tagtactataggaatttaacctacctctgagaatccaaaattgtctgtgctaccta--tcacaccacgtcct +s rn3.chr17 3180296 70 + 97307196 TAGACTTACAGGAATCAAACCCAGTCTTTCGAATTCAAAAACTGCCTCACTACCCA--GTATGCCTTATTCT +s canFam1.chrM 3769 72 + 16727 tagaataataggcttcgaacctaatcttaagaattcaaagatcttcgtgctaccaaacttacactatattct + +a score=910.0 +s hg17.chrM 4400 1 + 16571 a +s panTro1.chr3 35466173 1 - 209662276 a +s mm5.chrM 3842 1 + 16299 A +s rn3.chr17 3180366 1 + 97307196 A +s canFam1.chrM 3841 1 + 16727 a + +a score=149630.0 +s hg17.chrM 4401 275 + 16571 AAGTAAGGTCAGCTAAA-TAAGCTATCGGGCCCATACCCCGAAAATGTTGG-TTATACCCTTCCCGTACTAATTAATCCCCTGGCCCAACCCGTCATCTACTCT-ACCATCTTTGCAGGCACACTCATCACAGCGCTAAGCTCGCACTGATTTTTTACCTGAGTAGGCCTAGAAATAAACATGCTAGCTTTTATTCCAGTTCTAACCAAAAAAATAAACCCTCGTTCCACAGAA---------------------GCTGCCATC-AAGTATTTCCTCACGCAAGCAACCGCATCCATAAT +s panTro1.chr3 35466174 275 - 209662276 GATTAAGGTCAGCTAAA-TAAGCTATTGGGCCCATATACCAAAAATGTTGG-TTATATCCTTCCCATACTAATTAATCCCTTACCTCAACTTATTAT-TGCCCTCACCGTTTTCACAGGAACTTTTATCACAATGCTAGGCTCACACTGATTTCTCATCTGAACAGGGCTAGAAACAAACATACTAGCCCTTACCCCAATCTTAATTAAAAAAATAAATCCCTGCTCTACAGAA---------------------GCAGCCACC-AAATATTTCCTTACACAAGCAACCACATCTGTAAT +s mm5.chrM 3843 276 + 16299 TAGTAAGGTCAGCTAAT-TAAGCTATCGGGCCCATACCCCGAAAACGTTGGTTTAAATCCTTCCCGTACTAATAAATCCTATCACCCTTGCCATCATCTACTTC-ACAATCTTCTTAGGTCCTGTAATCACAATATCCAGCACCAACCTAATACTAATATGAGTAGGCCTGGAATTCAGCCTACTAGCAATTATCCCCATACTAATCAACAAAAAAAACCCACGATCAACTGAA---------------------GCAGCAACA-AAATACTTCGTCACACAAGCAACAGCCTCAATAAT +s rn3.chr17 3180367 265 + 97307196 TAGTAAGGTCA-TGAGA-TGCACCACTGGGCACA-ATCCCCCGAGCATTTG-CTACAGTTTCCCTCTATTAAT-AATCCCATA----------------------GCCATTACATCAAGCTCACTCATCATTATATTTAGTCCACACTTACTATCTACATGACCAGA-CTAGAAATAAGCACACAAGCATGAGTCCTGATTTTTATTAACAAATTG------TGAACTATGGAAGCAGGAGATGGATTTCTTAATGCGACTGCCTAAGTAATTCAT-GTGCAAACCACTACATCCTTACT +s canFam1.chrM 3842 277 + 16727 CAGTAAGGTCAGCTAAATTAAGCTATCGGGCCCATACCCCGAAAATGTTGGTTTATACCCTTCCCGTACTAATAAAACCCCCTATTCTCATTATCATCATAGCA-ACTATCATGACAGGAACCATAATCGTCATACTAAGCTCGCACTGATTACTGATCTGAATTGGATTCGAAATAAACATGCTAGCCATCATCCCTATTCTCATAAAAAAGTACAATCCACGAGCCATAGAG---------------------GCCTCTACA-AAATATTTTCTTACACAAGCTACAGCCTCAATATT +s galGal2.chrM 5170 276 + 16775 TAGTAAGGTCAGCTAAC-TAAGCTATCGGGCCCATACCCCGAAAATGATGGTTTAACCCCTTCCCCTACTAATGAACCCCCATGCAAAACTAATCTGCACAGTA-AGCCTCATCATGGGAACCAGCATCACAATCTCCAGCAACCATTGAATCTTAGCCTGAACAGGCTTAGAGATCAACACCTTAGCCATCATCCCCCTCATCTCCAAGTCACACCACCCCCGAGCGATTGAA---------------------GCCACTATC-AAATATTTCCTCACCCAATCAACTGCATCAGCCCT +s danRer1.chrM 4922 276 + 16596 GGATGAGGTCAGCTAAT-TAAGCTACCGGGCCCATACCCCGAACATGATGGTTAAAGTCCCTCCTTCATCAATGAACCCTTATGTCCTTATAATTTTAATATCC-AGCCTAGGTCTAGGAACCACATTAACTTTTTCTAGCTCACACTGAATTTTAGCCTGAATAGGATTAGAAATTAATACTTTAGCAATTGTCCCTCTAATAGCACAACAACACCACCCACGGGCAGTAGAA---------------------GCCACCACA-AAATACTTCCTTATTCAAGCTGCTGCCGCAGCAAT + +a score=31081.0 +s hg17.chrM 4676 152 + 16571 CCTTCT---------AATAGCTATCCTCTTCAACAATATACTCTCCGGACAATGAA-----CCATAACCAATACTACCAATCAATACTCATCATTA--ATAATCATAATGGCTATAGCAATAAAACTAGGAATAGCCCCCTTTCACTTCTGAGTCCCAGAGGTTACCC +s panTro1.chr3 35466449 150 - 209662276 TCTCAT---------AACAGATATCCTTTCCAATAACCTGTTCTCCGGACAATGAA-----CTATAAT--ACACTATCAATCAATTCTTATCCTTA--ATAATAATAGTGGCCCTAGTAATAAAACTAGGAATAGCCCCCTTTCACTTCTGAGTCTCAGAGGTAATTC +s mm5.chrM 4119 152 + 16299 TATCCT---------CCTGGCCATCGTACTCAACTATAAACAACTAGGAACATGAATATTTCAACAAC--AAACAAACGGT-----CTTATCCTTAACATAACATTAATAGCCCTATCCATAAAACTAGGCCTCGCCCCATTCCACTTCTGATTACCAGAAGTAACTC +s rn3.chr3 129986043 145 + 170969371 TTTAATGGACAAATAATTAGTTATTAAATTCAGAAAAATA--------AGAATGTA-----AAATCATTTTGTGGATTAATTAATACT----------GTAACAGTAATTCTTCTGATAAAAAAATCATGCTTTTTTCCATTCTACATTTGAATACCAGAAGCCATTC +s canFam1.chrM 4119 152 + 16727 ACTAAT---------AATAGGAGTCACTATCAACCTCCTTTACTCCGGCCAATGGG-----TAATCTCAAAAATCTCAAACCCCATCGCATCCATC--ATGATAACCACTGCCCTAACAATAAAACTAGGCCTATCTCCATTCCACTTCTGAGTTCCCGAAGTAACAC +s galGal2.chrM 5446 152 + 16775 AATCCT---------CTTCTCGAGCATAACCAACGCCTGATCCACCGGACAATGAG-----ACATTACACAACTAAACCACCCGACATCATGCCTA--ATATTAACAATAGCAATCGCAATCAAATTAGGACTAGTCCCATTCCACTTCTGATTCCCAGAAGTACTCC +s danRer1.chrM 5198 152 + 16596 AATTCT---------ATTCACAAGTACAACAAATGCCTGAATTTCAGGACAATGGG-----ATGTTACAGGTATACCAGGCCCAGCCACCAGTACA--GCAATAATGTTTGCATTGGCTCTCAAAATCGGTCTAGCACCAATACATTTTTGATTACCAGAAGTTCTTC + +a score=123662.0 +s hg17.chrM 4828 652 + 16571 AAGGCACCCCTCTGACATCCGGCCTGCTTCTTCTCACATGACAAAAACTAGCCCC---CATCTCAATCATATACCAAATCTCTCCCTCACTAAACGTAAGCCTTCTCCT--CACTCTCTCAATCTTATCCATCATAGCAGGCAGTTGAGGTGGATTAAACCAAACCCAGCTACGCAAAATCTTAGCATACTCCTCAATTACCCACATAGGATGAATAATAGCAGTTCTACCGTAC--------------------AACCCTAACATAACCATTC--TTAATTTAACTATTTATATTATCCTAACTACTACCGCATTCCTACT-ACTCAACT------TAAACTCCAGCACCACGACCCT-ACTACTATCTCGCACC--TGAAACAAGCTAACATGACTAA---CACCCTTA---ATTCCATCCACCCTCCTCTCCCTAGGAGGCCTGCCCCCGCTAACCGG----CTTTTTGCCCAAATGGGCCATTATCGAAGAATTCACAAAAAACAATAGCCTCATCATCCCCACCATCATAGCCACCATCACCCTCCTTAACCTCTACTTCTACCTACGCCTAATCTACTCCACCTCAATCACACTACTCCCCA---TATCTAACAACGTAAAAATAAAATGACAGTTTGAACATACAAAAC---CCACCCCATTCCTCCCCACACT--------CATCGCCCTTACCACGCTACTCCT +s panTro1.chr3 35466599 644 - 209662276 AGGGAATCTCTTTGATGTCTGGTATACTTCTCCTCACATGACAAAAACTAGCTCC---TATCTCAATTGTGTTTCAAA-CTTTTCATCAACAAACACGAACATCCTCCTGTCAC------AATCCTATCCATTATAGTGGGTGGTTGAGGGGGACTTAATCAAAC--AACTGTGTAAAATCCTAGCCTACTCCTCAGTCACTCACATAGGTTGAACAACAGCAGTACTAATTTAT--------------------AATCCAAACATTACTACCC--TAAACCTGATTATTTACTTTATCCTAACAACAACCGCATTTCTAGC-ACTCAACCAGAGTATAA------GCACCAGAACCCT-ATCACTATCTCACACC--TGAAACAAATGAGCATGGTTGA---CACCTGTA---ATTCCACTAATTCTACTATCCTTAGGAGGTTTATCCCCATTAACAGGGTTACTTTCT----AAATGAATCATCATTCAAGAATTTACAAAAAACAATAGCCTTACTACCCCAATCATTATAGTTAACATAACC-TACTCAACCTGTACTTTTATATATGCCTAGTCTATTCCTTCTCAGTAACACTATTCCCCA---TATCTAACAATATGAAAATAAAATGACAATTTGAAAACACAGAAC---CCACACTACTCTTCCCCCCACT-----TGTCATCTCTTCTACC---CTCCTCTT +s mm5.chrM 4271 652 + 16299 AAGGGATCCCACTGCACATAGGACTTATTCTTCTTACATGACAAAAAATTGCTCC---CCTATCAATTTTAATTCAAATTTACCCGCTACTCAACTCTACTATCATTTT--AATACTAGCAATTACTTCTATTTTCATAGGGGCATGAGGAGGACTTAACCAAACACAAATACGAAAAATTATAGCCTATTCATCAATTGCCCACATAGGATGAATATTAGCAATTCTTCCTTAC--------------------AACCCATCCCTCACTCTAC--TCAACCTCATAATCTATATTATTCTTACAGCCCCTATATTCATAGC-ACTTATAC------TAA---ATAACTCTATAACCATCAACTCAATCTCACTTCTATGAAATAAAACTCCAGCAATAC---TAACTATA---ATCTCACTGATATTACTATCCCTAGGAGGCCTTCCACCACTAACAGG----ATTCTTACCAAAATGAATTATCATCACAGAACTTATAAAAAACAACTGTCTAATTATAGCAACACTCATAGCAATAATAGCTCTACTAAACCTATTCTTTTATACTCGCCTAATTTATTCCACTTCACTAACAATATTTCCAA---CCAACAATAACTCAAAAATAATAACTCACCAAACAAAAACTAAAC---CCAACCTAATATTTTCCACCCT-----AGCTATCATAAGCACA---ATAACCCT +s rn3.chr17 3180986 514 + 97307196 AAGGGGGAGCACTAAAACTTAGCTCGCTTCACTTTGGAATACAAGGAATAACCCAAGGCATTTCCCTAATGTTTGTAATACCTTTCAAACTGA----------CCCCTC--AAATATCCCAATTTTCATTGTTATCTCTGATATATCA--TGTATTAAAGCAAAG-----TATGGGAAAACCTGGTGTAGTAAGCATTTGTCCAGATAGAATGAATAACAGCTGTTATTGTCTACTGTAATATTGCCTGATCCCCAGTTCATATGCCATTAGCCAGTATTCTCAACTCTTTATATTAATTTAAAT-------TATTTATATTAATTTAAAT------TAA----------------CCT-ACCAG-------------CGAAGTAAATTACCTT---TAA---CAGTTTTAACCATCCCAACAATCTTCTT--------------TGACCCTGTTAATGGA----ATTTCTACTTAAGTGAGATGTCAT----------------------------------------------------ATGACT-TCTCTAGTCTATATT----------CCTAATCTTATTTCTATTACAGACATGAC--------------------------ACAAAATAATGACTT-------CAGCAC---CTAAACTACTTAT----GAGCT--------CCTCCTATGTGTT--GTGACTCCT +s canFam1.chrM 4271 655 + 16727 AGGGAATTACGCTCATATCAGGAATAATCCTACTAACATGACAAAAAATCGCACC---TATATCCATCCTATATCAAATCTCTCCATCAATTAACACTAACCTTCTTAT--ACTAATAGCCCTTACATCCGTTCTAGTAGGAGGCTGAGGCGGACTAAATCAAACTCAACTACGAAAAATCATAGCATACTCCTCCATTGCCCACATAGGCTGAATAGCCGCTATCATTACTTAT--------------------AACCCTACAATAATAGTTC--TAAACTTAACTTTATATATTCTAATAACACTATCTACCTTCATACT-ATTTATAT------TAAACTCATCCACCACGACCCT-ATCTTTATCCCACATA--TGAAACAAATTTCCCCTAATCA---CTTCCATA---ATCTTAATCTTAATACTATCCCTAGGAGGACTACCCCCATTATCTGG----CTTCATCCCCAAATGAATAATTATTCAAGAATTAACGAAAAATAACATAATTATTATTCCAACACTAATGGCTATCACCGCTCTACTTAACTTATATTTCTACCTGCGACTCACATATAGCACCGCACTTACCATATTTCCAT---CCACAAACAACATAAAAATAAAATGACAGTTCGAATACACAAAAAAGGCAACCCTATTACCCCCCTTAAT-----TATTACCTCAACTATA---CTACTCCC +s galGal2.chrM 5598 649 + 16775 AAGGCTCCTCCCTAATCACTGCCCTACTACTCTCCACCCTAATAAAACTCCCCCC---AATCACACTCCTCCTCCTAACATCACAGTCTCTTAATACCACCTTACTCAC--CCTCCTAGCAATCTCCTCCACCCTAATCGGAGGCTGAATGGGCCTAAACCAAACACAAACACGAAAAATCCTAGCCTTCTCATCCATCTCCCATTTAGGATGAATAATTATAATTATCTCCTAT--------------------AACCCACAACTCACTATTC--TCACCTTCATCCTCTACACAATTATGACCTCAACTGTATTCCTATC--CCTAGCC------CAAATCAAAGTCCTAAAACTGTCAACACTACTCATCTCA--TGAACTAAAACCCCAATACTAAATGCAACTGTA---AT---ACTAACCCTCCTCTCCCTAGCTGGCCTCCCACCATTAACCGG----CTTCATGCCAAAATGACTCATTATCCAAGAACTAACCAAACAAGAAATAACCCCAATAGCCACAATCATCACAATACTATCACTCCTAAGCCTATTCTTCTACCTCCGACTTGCATACCACTCAACAATCACACTCCCCCCCAACTCATCAAACCACATAAAACTCTGA--------CGAACTAACAAAAC---CCTAAACACCCCCACCGCCATTCTAACTGCGCTATCAACCACC---CTATT--- +s danRer1.chrM 5350 652 + 16596 AAGGATTAGATCTGTTGACAGGACTAATTTTGTCAACCTGACAAAAACTTGCCCC---AATAGCATTAATTATCCAAACGACCCAAACCACTGACCCTCTTATTCTTAC--ATCACTAGGAATTGCTTCCTCTCTCATTGGAGGGTGAAGCGGACTTAACCAAACCCAACTCCGAAAAATTCTAGCTTATTCATCAATTGCCCACATAGGGTGAATAATTATTGTTATCCAGTAC--------------------GCTCCGCAACTTACTCTGA--TTGCTTTAGGAACATATATCTTTATAACATCCGCGGCATTCCTTAC-TTTAAAAG------TATTATCAGCCACAAAAATTAA-CACCCTAACAACGACC--TGACCGAAAAGCCCAATCCTGG---CAGCAATT---GCTACTTTAGTTATATTATCACTGGGAGGACTTCCCCCACTGACGGG----ATTCATACCAAAATGATTAATCCTACAAGAGTTAACGAAACAAGACCTACCAGCCACAGCTACTATCATGGCGCTTACCGCCCTCCTAAGCTTATTTTTTTACCTACGTCTATGTCATGCAATAACATTAACGACTTCACCAA---ACACTATCAATTCAGCCCCTCACTGACGGGTACAAACGACCCAAA---ACTCACTACCCCTAACAATCTC-----TGTTACTGTTACTATA---GGACTTTT + +a score=211260.0 +s hg17.chrM 5480 399 + 16571 ACCTATCTCCCC------TTTT------ATACTAA---TAATCTTATAGAAATTTAGGTTAAATA-----CAGACCAAGAGCCTTCAAAGCCCTCAGTAAGT--TGCAA--TACT--TAATTTCTGCAACAG-------CTAAGGACTGCAAAACCCCACTCTGCATCAACTGAACGCAAATCAGCCACTTTAATTAAGCTAAGCCCTT--ACTAGACCAATGGGACTTAAACCCACAAACA---CTTAG-----------TTAACAGCTAAGCACCCTAATCAACTGGCTTCAATCTACT-TCTCCCGCCGCC----GGGAAAAAAGGCGGGAGAAGCCCCGGCAGG-TTTGAAGCTGCTTCTTCGAATTTGCAATTCAATATG-A-AAA-TCACCTCGGAG---CTGGTAAAAAGAGGCCT--AACCCCTGTCTTTAGATTTACAGTCCAATGCTT---CACT +s panTro1.chr3 35467243 404 - 209662276 ACCCATCTCTCC------ATTA------ATACTAACTATAA-CTTA--GAAATTTAGGTTAAATA------AGACCAAGAACCTTCAAAGCCCTTAGTAAGT-----AAGTTACTCTTAATTTCTGTAACAGA-----TCTAAACACTGCAAGACTCTATACTGCATCAACTGAACGCAAATCAACCGCTGTAATTAAGCTAAGCCCTT--ATGAGATTGGTGGAATTCAAACC-ACGAATAAAATTTAG-----------TTAACAGCTAAACACCCTAATCAACTGGCTTCAATTTACT----CCCACCGTCATTGGGGGAGAAAGGCAG-AGAAGCCCCAGCAGG-ATTGAAGCTGCTCCTTTGAATTTTCAGTTCAACATG-AGAAA-TCACCTCAGAG---CTGCTAAAAAGAGGCCTT-GACCTCTGTCTTTAGATTTACAGTCTAATGCTT----ACT +s mm5.chrM 4923 390 + 16299 ACCCCTAGCCCC------CC---------AACTAA---TTA-CCTA--GAAGTTTAGGATATACT------AGTCCGCGAGCCTTCAAAGCCCTAAGAAAACA-CACAAGTT-----TAACTTCTG-------------ATAAGGACTGTAAGACTTCATCCTACATCTATTGAATGCAAATCAATTGCTTTAATTAAGCTAAGACCTC-AACTAGATTGGCAGGAATTAAACCTACGAAAA---TTTAG-----------TTAACAGCTAAATACCCTATT--ACTGGCTTCAATCTACT----TCTACCGCCGAAAAAAAAAAATGGCGGTAGAAGTCTTAGTAGA-GATTTCTCTACACCTTCGAATTTGCAATTCGACATG-A-ATA-TCACCTTAAGACCTCTGGTAAAAAGAGGATTTAAACCTCTGTGTTTAGATTTACAGTCTAATGCTT----ACT +s rn3.chr14 86906642 384 - 112220682 ACTTACTTTCCC------TTCATCACCCCAACAAA---TCA-ATTA--GAAGTTTAGGATATTCT------AGTCCAAGAGCATTCAAAGCCCTAAGAAAACA-AATAAATT-----TAATTTCTG-------------ATAAGTACTGTAAGACTCTATCCTAAATCTACTGAATGCAAATCCATCTCTTTATTTAAGCTAAGACCTT-AACTATATTGGCAGGAATCAAGCCTGAGAAAA---TTTAAGAGTGAAAATTTTAAGAGTGAAATACCCTACC--TCTGAATTCAATCTAC-----CTCTTCTTCATATCAGAAAGGGGACAGGAGAAGCCTTAGTAAA-----------------------CAAAATTCCATGTC-A-TTA-TCACCTTAAAGA--TTGGTAAAAAGAGGGCTT-ACCCTTTATGTCTAGATTTCCAGTCAAATGCTT----ACT +s canFam1.chrM 4926 407 + 16727 ACTAACACCTAT------ATTA------TCAGTCT---TGG-ACTA--GGAGTTTAGGTTAGACC------AGACCAAGAGCCTTCAAAGCTCTAAGCAAGTGCTACACACT-----TAACCCCTG-ATCAAATCACCTCTAAGGGCTGCAAGAATCTATCTTACATCAATTGAATGCAAATCAAACACTTTAATTAAGCTAAGCCCTC--CCTAGATTGGTGAGCTTCTACCTCACGAAAT---TTTAG-----------TTAACAGCTAAATACCCTAGT-AACTGGCTTCAATCTACCTTCTCCCGCCGCG--TAGAAAAAAAAGGCGGGAGAAGCCCCGGCGGC-GTCTAGGCTGCTTCTTTGAATTTGCAATTCAATATG-A-AAATTCACCACGGAGC--TTGGCAAAAAGAGGACTTAAACCCCTATCTTTAGATTTACAGTCTAATGCTT----TTA +s galGal2.chrM 6248 382 + 16775 CCCCTTTCCCCC------CTAA------TTATTAC---CAT-ACTATAGAAACTTAGGATTAACTGTCACCAAACCAAAGGCCTTCAAAGCCTTAAATAAGA--GTTAAACT-CTCTTAGTTTCTG-CCCAA-------CTAAGACCAACAGGACATTAACCTGTATCTCCTGAATGCAAATCAGACGCTTTAATTAAGCTAAGGCCTCTACCTAGACAGATGGGCTTCGATCCCATACAAT---TTTAG-----------TTAACAGCTAAATGCCAACACCAATTGGCTTCTGCCTAC-----------------------------------AGACCCCGGCACA-CTTTAGTGTACATCAACGAGTTTGCAACTCATTATG-A-ACT-TCACTACAGAG---TCGATAAGAAGAGGAATTGAACCTCTGTAAAAAGGACTACAGCCTAACGCTTCAACACT +s danRer1.chrM 6002 408 + 16596 ACCACTGACCCCAGCCATCTTA------ATATTAA---CAA-CATA--GAGACTTAGGATAACCT------AGACCAAGAGCCTTCAAAGCTCTCAGTAGAA--GTGAAAAT-CTTCTAGTCTCTG-------------ATAGGACTTACA-GACGTTACTCCGCATCTTCTAAATGCAAATCAGATATTTTAATTAAACTAAAGCCCT--ACTAGATGGGAAGGCCTCGATCCTACAAAAT---CTTAG-----------TTAACAGCTAAGCGCCCAAGCCAGCGAGCATCCATCTACT-TTTCCCGCCGTT--GAACCCGGTAAGGCGGGAAAAGCCCCGGCAGGAGGTTTACCTGCGTCTTCAGATTTGCAATCTGATATGTA-TCA-TCACCACGAGGCC-ATGGTAGAAAAAGGACTCAAACCTCTGTCCGCGGAGCTACAATCCGCCGCCTAAACACT + +a score=338602.0 +s hg17.chrM 5879 388 + 16571 CAGCCATTTTACCTCACCCCCACTGATGTTCGCCGACCGTTGACTATTCTCTACAAACCACAAAGACATTGGAACACTATAC---CTATTATTCGGCGCATGAGCTGGAGTCCTAGGCACAGCTCTAAGCCTC--CTTATTCGAGCCGAGCTGGGCCAGCCAGGCAAC-CTTCTAGGTAACGACCACATCTACAACGTTATCGTCACAGCCCATGCATTT-GTAATAATCTTCTTC-ATAGTAATACCCATCATAATCGGAGGCTTTGGCAACTGACTAGTTCCCCTAATAATCGGTGCCCCCGATATGGCGTTTCCCCGCATAAACAACATAAGCTTCTGACTCTTACCTCCCTCTCTCCTACTCCTGC-TCGCATCTGCTATAGTGGAGGCCGGA +s panTro1.chr3 35467647 387 - 209662276 CAGCCACTTTACCTTTCCCCCACCTATGTTCATCAATCGTTGATTGTTTTCAACTAACCACAAAGATATCGGAACACTATACGTGCTAT-----GGCGCCTGAACCGGGGTAGTAGGCACCGCCTTAAGCCTT--CTAATTCGAGCAGAACTCGGCCAACCAGG-AACTCTGTTAGGAGATGATCGGATCTACAATGTTATTGTTACCGCCCACGCATTTCGTTATAATTTTCTTT-ATGGTAACACTGATCATGATAGGGGTTTTTGGCAACTGGCTAGTCCCTCTGACTATTGGTTGACTCGACATGGCATTCCCCTGAATAAATAATATCAGCTTCTGGCTTTTCCCCCTATCTTTTCTACTCCTCC-TTGCGTCTTCAATATTTCAAGCCAGT +s mm5.chrM 5313 377 + 16299 CAGCCATTTTACCT-----------ATGTTCATTAATCGTTGATTATTCTCAACCAATCACAAAGATATCGGAACCCTCTAT---CTACTATTCGGAGCCTGAGCGGGAATAGTGGGTACTGCACTAAGTATT--TTAATTCGAGCAGAATTAGGTCAACCAGG-TGCACTTTTAGGAGATGACCAAATTTACAATGTTATCGTAACTGCCCATGCTTTT-GTTATAATTTTCTTC-ATAGTAATACCAATAATAATTGGAGGCTTTGGAAACTGACTTGTCCCACTAATAATCGGAGCCCCAGATATAGCATTCCCACGAATAAATAATATAAGTTTTTGACTCCTACCACCATCATTTCTCCTTCTCC-TAGCATCATCAATAGTAGAAGCAGGA +s rn3.chr2 24388039 379 - 258222147 CAGCTGTTCTATCT----TCTAGCCAGGCTCATTAACCTTTTATGGTTTTCAACAAACCAGACACATATTGACATACTATTT----TATTATTTTGTGCTATAACTAGAGTAGGAGCTACTGCCCTAAGACTTTATTAATCCAAGTAAAATTATGACAAGCGGG-CACATTAGTTAGTGGTAATCAAATTTACATGGGCATTGTT------TATACGTTT-TAAATAACCTCTTTTAATAGTCATGACAGATATAAGTGAAGGACTTTTAA--TTGTTAGTTCTATTAGGGACTGAAGGCCCAGGTAGAACACTCGTTCAACTCCACAAAATAAATTTCTGGCCATTTGCTTCATCAGTTTGACTTCAGCTTTGCCTCCTCAATAGTAGAAACCAGT +s canFam1.chrM 5334 377 + 16727 CAGCCATTTTACCT-----------ATGTTCATTAACCGATGACTGTTCTCCACTAATCACAAGGATATTGGTACTTTATAC---TTACTATTTGGAGCATGAGCCGGTATAGTAGGCACTGCTTTGAGCCTC--CTCATCCGAGCCGAACTAGGTCAGCCCGG-TACTTTACTAGGTGACGATCAAATTTATAATGTCATCGTAACCGCCCATGCTTTC-GTAATAATCTTCTTC-ATAGTCATGCCCATCATAATTGGGGGCTTTGGAAACTGACTAGTGCCGTTAATAATTGGTGCTCCGGACATGGCATTCCCCCGAATAAATAACATGAGCTTCTGACTCCTTCCTCCATCCTTTCTTCTACTAT-TAGCATCTTCTATGGTAGAAGCAGGT +s galGal2.chrM 6630 380 + 16775 CAGCCATCTTACCT--------GTGACCTTCATCAACCGATGATTATTCTCAACCAACCACAAAGACATTGGCACTCTTTAC---CTAATTTTCGGCACATGGGCGGGCATAGCCGGCACAGCACTTAGCCTT--CTAATTCGCGCAGAACTAGGACAGCCCGG-AACTCTCTTAGGAGACGATCAAATTTACAATGTAATCGTCACAGCCCATGCTTTC-GTCATAATCTTCTTT-ATAGTTATACCCATCATGATCGGTGGCTTCGGAAACTGACTAGTCCCACTTATAATCGGTGCCCCAGACATAGCATTCCCCCGCATAAATAACATAAGCTTCTGACTCCTCCCTCCCTCCTTCCTTCTCCTAC-TAGCCTCATCTACCGTAGAAGCTGGG +s danRer1.chrM 6410 377 + 16596 CGGCCACCCTACCT-----------GTGACAATCACACGTTGATTTTTCTCAACTAATCATAAAGACATTGGCACCCTGTAT---CTAGTATTTGGTGCTTGAGCCGGAATAGTAGGGACCGCATTAAGCCTC--TTAATCCGAGCTGAACTTAGCCAACCAGG-AGCACTTCTTGGTGATGATCAAATCTATAATGTTATTGTTACTGCCCATGCTTTT-GTAATAATTTTCTTT-ATAGTAATACCCATTCTTATTGGGGGATTTGGAAACTGACTTGTGCCACTAATGATTGGGGCCCCCGATATGGCATTTCCCCGAATAAATAATATAAGCTTCTGACTTCTTCCACCCTCATTTCTTCTTCTAT-TAGCTTCTTCTGGAGTTGAAGCAGGA + +a score=20468.0 +s hg17.chrM 6267 22 + 16571 GCAGGAACAGGTTGAACAGTCT +s panTro1.chr3 35468034 22 - 209662276 GCTGGAACCAGCTGGACAGTTT +s mm5.chrM 5690 22 + 16299 GCAGGAACAGGATGAACAGTCT +s canFam1.chrM 5711 22 + 16727 GCAGGAACGGGATGAACCGTAT +s galGal2.chrM 7010 22 + 16775 GCCGGCACAGGATGGACAGTTT +s danRer1.chrM 6787 22 + 16596 GCTGGAACAGGATGAACAGTTT + +a score=598760.0 +s hg17.chrM 6289 707 + 16571 ACCCTCCCTTAGCAGGGAACTACTCCCACCCTGG----------AGCCTCCGTAGACCTAACCATCTTCTCCTTACACCTAGCAGGTGTCTCCT--CTATCTTAGGGGCCATCAATTTCATCACAACAATTATCAATATAAAACCCCCTGCCATA-ACCCA-ATACCAAACGCCCCTCTTCGTCTGATCCGTCCTAATCACAGCAGTCCTACTTCTCCTATCTCTCCCAGTCCTAG----CTGCTGGCATCACTATACTACTAACAGACCGCAACCTCAACACCACCTTCTTCGACCCCGCCGGAGGAGGAGACCCCATTCTATACCAACACCTATTCTGATTTTTCGGTCACCCTGAAGTTTATATTCTTATCCTACCAGGCTTCGGAATAATCTCCCATATTGTAACTTACTACTCCGGAAAAAAAGAACC-ATTTGGATACATAGGTATGGTCTGAGCTATGATATCAATTGGCTTCCTAGGGTTTATCGTGTGAGCACACCATATATTTACAGTAGGAATAGACGTAGACACACGAGCATATTTCACCTCCGCTACCATAATCATCGCTATCCCCACCGGCGTCAAAGTATTTAGCTGACTCGCCACACTCCACGGAAGCAATATGAAATGATCTGCTGCAGTGCTCTGAGCCCTAGGATTCATCTTTCTTTTCACCGTAGGTGGCCTGACTGGCATTGTATTAGCAAACTCATCACTAGAC +s panTro1.chr3 35468056 706 - 209662276 GTCCCCCTTTAGCAGGAAAC----------CTAGCACATGCAGAAGCCTCTGTGGCTCTGACCATCTTCTCGTTCCACTTAGCAGGTGTTTTTTTTCTATTTTAGGGGCCattaattttattat--taattattaaCATAAAACCCCCAACCATA-TCCCA-GTATCCAACACCGCTTTTCGTCTGCTCAGTCCGCATTATGGCAGTCCT-CTACTCCTTTCCCTCCCAGTCCTAG----CCGCCGGCATTGCTATGCTATTAACTGACCATAACCTCAACAGTACTTCTTTTGACCCTGCTTGTGG-GGTGACCCCATCTTGTTCCAACATTTATTCTGATTCTTTGGTCGCCCTGAAGTCTACATCCTTATCCTACCGGGCTTCGGGATAATCTCCCACATCGCAACATATTATTCTGGAAAAAAGGAACCCATTTGTGTACATGGGCATAGTATGAGCCATGATATCAGTTGGCATCTTTGGATTTATCGTATGGGCTCACCATATATTTACAGTAGGAATAGACATAGACACACTAGCATACTTCACCTCCACTACCATAATAATTGCCATCCCTACTGGCATCAAGGTCTTTAGCTGATTAGCTACCCTGCACCGCGGTAACATCAGATGATCTCCCGCAATATTCTGAGCCCTAGGATTCATTTTCCTTTACAGAGTAGGAGGTTTAACCGACATCGTACTAGCTAATTCATCACTAGAT +s mm5.chrM 5712 707 + 16299 ACCCACCTCTAGCCGGAAAT----------CTAGCCCATGCAGGAGCATCAGTAGACCTAACAATTTTCTCCCTTCATTTAGCTGGAGTGTCAT--CTATTTTAGGTGCAATTAATTTTATTACCACTATTATCAACATGAAACCCCCAGCCATA-ACACA-GTATCAAACTCCACTATTTGTCTGATCCGTACTTATTACAGCCGTACTGCTCCTATTATCACTACCAGTGCTAG----CCGCAGGCATTACTATACTACTAACAGACCGCAACCTAAACACAACTTTCTTTGATCCCGCTGGAGGAGGGGACCCAATTCTCTACCAGCATCTGTTCTGATTCTTTGGGCACCCAGAAGTTTATATTCTTATCCTCCCAGGATTTGGAATTATTTCACATGTAGTTACTTACTACTCCGGAAAAAAAGAACC-TTTCGGCTATATAGGAATAGTATGAGCAATAATGTCTATTGGCTTTCTAGGCTTTATTGTATGAGCCCACCACATATTCACAGTAGGATTAGATGTAGACACACGAGCTTACTTTACATCAGCCACTATAATTATCGCAATTCCTACCGGTGTCAAAGTATTTAGCTGACTTGCAACCCTACACGGAGGTAATATTAAATGATCTCCAGCTATACTATGAGCCTTAGGCTTTATTTTCTTATTTACAGTTGGTGGTCTAACCGGAATTGTTTTATCCAACTCATCCCTTGAC +s rn3.chr2 24388832 523 - 258222147 ATTTACCATTAACCAGAAAT----------CCTGCAGCGACAGGGGCTTCTGTAATTATTGCCATTTTCATGTTACTTTTAGAAAATGTTTCTT--CAGTTTTAAGAATTACTAATTACACCATAACATCCATGAAGATAATAACACCAGCTACAGGCACAGGTACCA---------------CTGAACAGCATTAATTACAGCTGTACTTTTACTCTTAGCTTATCTAATACTAGGACCTAGCTAGCGTCATCATGCTGTACACA-ACAATACTCTTAACATCTCTTTCTTCAATCCAGCGTGAGAAAAT--CCCACTGCTAGATCAATCATGATTCTTATCTTTTGGG-ATCCAGAAACACACGTTATCATCTGATCCTGACTAGGAATGATCTTGCATAGTGTGACA-ACTATTCTTGATCCAAAGAGTC-AAT-GGTTACATGGGG--TATCTGAGCCAGGATAGCGGTTGGTTTGTATGGCTTTCCTGCATGGGTCTACCATATTTTCGCAGTGGCA--------------------------------------------------CATTCC-----------------------------------------------------------------CATTATCCTCATTCATAGGCATGATCTTCTC---------------------------------------------------- +s canFam1.chrM 5733 707 + 16727 ACCCCCCACTGGCTGGCAAT----------CTGGCCCATGCAGGAGCATCCGTTGACCTTACAATTTTCTCCTTACACTTAGCCGGAGTCTCTT--CTATTTTAGGGGCAATTAATTTCATCACTACTATTATCAACATAAAACCCCCTGCAATA-TCCCA-GTATCAAACTCCCCTGTTTGTATGATCAGTACTAATTACAGCAGTTCTACTCTTACTATCCCTGCCTGTACTGG----CTGCTGGAATTACAATACTTTTAACAGACCGGAATCTTAATACAACATTTTTTGATCCCGCTGGAGGAGGAGACCCTATCCTATATCAACACCTATTCTGATTCTTCGGACATCCTGAAGTTTACATTCTTATCCTGCCCGGATTCGGAATAATTTCTCACATTGTCACTTACTACTCAGGGAAAAAAGAGCC-TTTCGGTTATATAGGAATAGTATGAGCAATAATATCTATTGGGTTTTTAGGCTTTATCGTATGAGCTCACCATATGTTTACCGTAGGAATAGATGTAGACACACGAGCGTACTTTACGTCCGCCACTATAATTATCGCTATTCCAACGGGAGTAAAAGTATTTAGTTGACTGGCAACACTTCATGGAGGCAATATTAAATGATCTCCAGCTATGCTATGAGCTTTAGGGTTTATTTTCTTATTTACAGTAGGCGGGTTAACAGGTATTGTCCTAGCTAATTCGTCCTTAGAC +s galGal2.chrM 7032 704 + 16775 ACCCCCCTTTAGCCGGCAAC----------CTAGCCCACGCTGGCGCATCAGTAGACCTAGCCATCTT-TCATTAC--TTAGCAGGTGTTTCCT--CCATTCTAGGAGCCATCAACTTTATCACTACCATCATCAACATAAAACCCCCCGCACTG-TCACA-ATACCAAACACCCCTATTCGTATGATCCGTCCTCATTACTGCCATCCTACTACTCCTCTCCTTACCCGTCCTAG----CAGCTGGGATTACCATACTACTTACCGACCGCAACCTTAACACCACATTCTTCGACCCAGCTGGAGGAGGAGACCCAATCCTATACCAACACCTATTCTGATTCTTCGGTCACCCCGAAGTTTACATCCTCATCCTCCCAGGTTTCGGAATAATTTCCCACGTAGTAGCATACTATGCAGGAAAAAAAGAACC-ATTCGGATACATAGGAATAGTCTGAGCCATACTGTCAATCGGATTCCTTGGCTTCATTGTATGAGCCCACCATATATTCACAGTCCGAATGGACGTAGACACCCGAGCCTACTTTACATCAGCCACAATAATCATCGCCATCCCAACTGGTATTAAAGTCTTCAGCTGACTAGCAACCCTGCACGGAGGAACAATTAAATGAGACCCCCCTATGCTATGAGCCCTAGGATTCATCTTCCTCTTCACTATCGGAGGCCTAACGGGAATCGTCCTTGCTAACTCATCACTAGAT +s danRer1.chrM 6809 707 + 16596 ATCCACCTCTTGCAGGCAAC----------CTTGCCCATGCAGGAGCATCTGTTGATCTAACAATTTTTTCACTACACTTAGCAGGTGTTTCAT--CTATTCTTGGAGCAATTAATTTTATTACTACTACAATTAACATGAAGCCACCAACTATC-TCTCA-GTATCAAACTCCATTATTTGTATGAGCTGTCTTAGTTACAGCTGTACTACTTCTTTTATCTTTACCAGTGTTAG----CTGCCGGAATTACAATACTTCTTACAGACCGAAATCTTAACACAACGTTCTTTGACCCGGCAGGAGGGGGAGATCCAATTCTTTATCAACACTTATTTTGATTCTTTGGCCACCCAGAAGTCTACATTCTTATTTTACCAGGATTCGGCATTATCTCCCATGTTGTAGCATACTACGCAGGGAAAAAAGAACC-ATTCGGGTATATAGGAATAGTATGAGCTATAATGGCTATTGGTCTCTTAGGTTTTATTGTATGAGCCCATCACATATTCACTGTAGGAATGGATGTAGACACCCGAGCATACTTCACATCCGCCACAATGATTATTGCTATTCCAACTGGTGTAAAAGTATTTAGCTGATTAGCCACTCTCCACGGAGGAGCTATTAAATGAGAAACCCCTATACTATGGGCACTAGGATTTATTTTCTTATTTACAGTAGGAGGGTTAACCGGAATCGTTTTAGCCAACTCATCATTAGAC + +a score=102002.0 +s hg17.chrM 6790 88 + 16571 GAATAGACGTAGACACACGAGCATATTTCACCTCCGCTACCATAATCATCGCTATCCCCACCGGCGTCAAAGTATTTAGCTGACTCGC +s panTro1.chr3 35468556 88 - 209662276 GAATAGACATAGACACACTAGCATACTTCACCTCCACTACCATAATAATTGCCATCCCTACTGGCATCAAGGTCTTTAGCTGATTAGC +s mm5.chrM 6213 88 + 16299 GATTAGATGTAGACACACGAGCTTACTTTACATCAGCCACTATAATTATCGCAATTCCTACCGGTGTCAAAGTATTTAGCTGACTTGC +s rn3.chr14 86907881 83 - 112220682 GCCTTGATGGAGAAACATGAGATAACTTTACGTCAGCCATTATTATTATTGTAATTCCTACTGCTGC-----TATTTAGCTGACTTAC +s canFam1.chrM 6234 88 + 16727 GAATAGATGTAGACACACGAGCGTACTTTACGTCCGCCACTATAATTATCGCTATTCCAACGGGAGTAAAAGTATTTAGTTGACTGGC +s galGal2.chrM 7530 88 + 16775 GAATGGACGTAGACACCCGAGCCTACTTTACATCAGCCACAATAATCATCGCCATCCCAACTGGTATTAAAGTCTTCAGCTGACTAGC +s danRer1.chrM 7310 88 + 16596 GAATGGATGTAGACACCCGAGCATACTTCACATCCGCCACAATGATTATTGCTATTCCAACTGGTGTAAAAGTATTTAGCTGATTAGC + +a score=448969.0 +s hg17.chrM 6996 444 + 16571 ATCGTACTACACGACACGTACTACGTTGTAGCTCACTTCCACTATGTCCTATCAATAGGAGCTGTATTTGCCATCATAGGAGGCTTCATTCACTGATTTCCCCTATTCTCAGGCTACACCCTAGACCAAACCTACGCCAAAATCCATTTCACTATCATATTCATCGGCGTAA---ATCTAACTTTCTTCCC---ACAACACTTTCTCGGCCTATCCGGAATGCCCCGACGTTACTCGGACTACCCCGATGCATACACCACATGAAACATCCTATCATCTGTAGGCTCATTCATTTCTCTAACAGCAGTAATATTAAT----------------AATTTTCATGATTTGAGAAGCCTTCGCTTCGAAGCGAAAAGTCCTAATAGTAGAAGAACCCTCCATAAACCTGGAGTGACTATATGGATGCCCCCCACCCTACCACACATTCGAAG----AACCCGTATACATAAAA- +s panTro1.chr3 35468762 441 - 209662276 ATTGTCTTACACGACACATACTATGTTGTAGCCCATTTCCACTACGTTCTATCAATAGGAGCAATATTTGCCATTACAGGAGGCTTTGTCCACTGATTCCCCCTATTTTCAGGTTATACATTTAATCAGACCTATGCTAAAATCCACTTCACCATTATATTCATAGGTGTTA---ACTTAACCTTTTTTCC---ACAGCACTTCCTCAGCCTATCGGGTATGCCTCGACATTACTCCAATTACTCTGATGTGTACACCATATGAAATATTGTCTCATCCATAGGCTCATTTATCTCACTAACAGCTGTTATACTAAT----------------AATCGTTATGATCTGAGAGGCCTTTGCTTCAAAATGAAAAGT----ACAATTGCACAATCATCTACTAATTTAGAGTGACTTTACAGCTGTCCACCACCTTACCACACATTTGAAGAGCCAACCTGTGTG---AAAA- +s mm5.chrM 6419 444 + 16299 ATCGTGCTTCACGATACATACTATGTAGTAGCCCATTTCCACTATGTTCTATCAATGGGAGCAGTGTTTGCTATCATAGCAGGATTTGTTCACTGATTCCCATTATTTTCAGGCTTCACCCTAGATGACACATGAGCAAAAGCCCACTTCGCCATCATATTCGTAGGAGTAA---ACATAACATTCTTCCC---TCAACATTTCCTGGGCCTTTCAGGAATACCACGACGCTACTCAGACTACCCAGATGCTTACACCACATGAAACACTGTCTCTTCTATAGGATCATTTATTTCACTAACAGCTGTTCTCATCAT----------------GATCTTTATAATTTGAGAGGCCTTTGCTTCAAAACGAGAAGTAATATCAGTATCGTATGCTTCAACAAATTTAGAATGACTTCATGGCTGCCCTCCACCATATCACACATTCGAGGAACCAACCTATGTA---AAA-- +s rn3.chr2 24389355 357 - 258222147 --------------------------------------------------------------------------CATTGTAGATTTCTTTCACTGATTTCCACTCTTTTGAGGTGATGCTCT--ATGAAAACTAAACAAAAAATCATTTTACAATTAAATTTGTAGGTGTTATCCGTTTAAATTTTCTGGCTAATCAATAATTTCACATTCTCT--------------TGCTATTCTTAACAGTC--------ATAGCCCATAAAATCTCAACTCATTGACAAATTCATTTATTAAACTAACAGTAGTAGTGCTAACTCTGTTAGTAGTGCTAATTCTTCATAACTTTCAGTGTTTATGCTTTAAAATAGGAAGTC---TCAGCAGAACATTCAACCACAAATCTTAAATGATTTTATTTCTAGCC--------ACCAGACATTCAAAGAACTTTCTCACGGA---AAA-- +s canFam1.chrM 6440 444 + 16727 ATCGTTCTTCATGATACATATTATGTTGTGGCTCATTTTCACTATGTGCTTTCAATAGGAGCAGTTTTTGCCATTATGGGAGGATTTGCCCACTGATTCCCTTTATTCTCAGGTTATACTCTTAACGATACTTGAGCAAAGATTCACTTTACAATTATGTTTGTGGGAGTAA---ATATAACTTTCTTCCC---TCAACATTTCCTAGGTTTATCTGGAATACCTCGTCGATACTCTGACTACCCAGATGCATATACTACCTGAAATACCGTCTCCTCTATAGGATCGTTTATCTCGCTTACAGCGGTGATGCTTAT----------------AATTTTTATGATCTGGGAAGCCTTTGCATCCAAACGAGAAGTTGCTATAGTAGAACTTACTACAACTAACATTGAGTGACTACATGGATGTCCCCCTCCATACCACACGTTCGAAGAACCTACATATGTG---ATC-- +s galGal2.chrM 7736 444 + 16775 ATTGCCCTTCATGACACCTACTATGTAGTCGCCCACTTCCACTATGTCCTCTCAATGGGGGCAGTTTTTGCCATTCTAGCAGGATTTACCCACTGATTTCCCCTCTTCACAGGCTTTACCCTACACCCATCATGAACCAAGGCACATTTCGGAGTAATATTTACCGGAGTTA---ACCTAACCTTTTTCCC---CCAACATTTCCTGGGCCTAGCTGGAATACCCCGACGATACTCAGATTACCCAGACGCCTACACACTATGAAACACACTATCCTCAATCGGCTCCTTAATTTCAATAACAGCCGTAATCATACT----------------CATATTCATCGTCTGAGAAGCCTTCTCAGCAAAACGAAAAGTACTCCAACCCGAATTAACTGCCACTAATATCGAATGAATTCATGGCTGCCCACCCCCATACCACACCTTCGAAGAACCAGCCTTTGTA---CAA-- +s fr1.chrUn 326222607 444 + 349519338 ATCGTATTACACGACACCTACTACGTAGTTGCCCATTTCCACTACGTCCTCTCCATGGGTGCTGTATTTGCAATTATGGGTGCATTCGTACACTGATTCCCACTATTTTCAGGATACACACTCCACAGCACTTGAACTAAAATCCACTTCGGAGTAATGTTCATTGGTGTCA---ACCTAACCTTCTTCCC---TCAACACTTCCTTGGTCTAGCTGGAATACCTCGACGATACTCCGACTACCCCGACGCCTACGCCCTATGAAACTCCGTCTCCTCAATTGGCTCAATAGTCTCTCTAGTGGCAGTAATTATGTT----------------CCTCTTTATCCTCTGAGAGGCCTTCACCGCTAAGCGAGAAGTCCAATCAGTTGAACTAACAATGACAAATGTAGAATGACTACACGGGTGCCCTCCTCCTTACCACACATTCGAAGAGCCCGCCTTTGTC---CAA-- +s danRer1.chrM 7516 445 + 16596 ATCGTACTACATGACACATACTACGTAGTAGCACACTTTCACTATGTTCTTTCAATAGGAGCTGTATTCGCTATTATAGCAGGCTTTGTTCACTGATTCCCACTATTTACAGGCTACACCCTAAACAGTGTATGAACAAAAATCCATTTCGGGGTTATATTTATCGGAGTAA---ATCTCACATTCTTCCC---ACAACATTTCCTAGGTTTAGCAGGAATACCACGACGGTACTCTGACTACCCAGACGCCTATGCACTCTGAAATACAGTATCTTCTATTGGGTCACTAATTTCTTTAGTAGCAGTAATCATGTT----------------CTTATTTATCTTATGAGAAGCCTTTACCGCCAAACGAGAAGTTCTGTCAGTTGAATTGACCGCAACAAATGTAGAATGATTACACGGCTGCCCTCCCCCCTACCACACATTTGAGGAGCCAGCATTCGTT---CAA-A + +a score=81951.0 +s hg17.chrM 7029 51 + 16571 CACTTCCACTATGTCCTATCAATAGGAGCTGTATTTGCCATCATAGGAGGC +s panTro1.chr3 35468795 51 - 209662276 CATTTCCACTACGTTCTATCAATAGGAGCAATATTTGCCATTACAGGAGGC +s mm5.chrM 6452 51 + 16299 CATTTCCACTATGTTCTATCAATGGGAGCAGTGTTTGCTATCATAGCAGGA +s rn3.chrUn 51520592 51 + 75822765 CACTTCTACTAGGTACTGTCTATAGGAGCGGCACTCGCTATTACAGCTGGG +s canFam1.chrM 6473 51 + 16727 CATTTTCACTATGTGCTTTCAATAGGAGCAGTTTTTGCCATTATGGGAGGA +s galGal2.chrM 7769 51 + 16775 CACTTCCACTATGTCCTCTCAATGGGGGCAGTTTTTGCCATTCTAGCAGGA +s fr1.chrUn 326222640 51 + 349519338 CATTTCCACTACGTCCTCTCCATGGGTGCTGTATTTGCAATTATGGGTGCA +s danRer1.chrM 7549 51 + 16596 CACTTTCACTATGTTCTTTCAATAGGAGCTGTATTCGCTATTATAGCAGGC + +a score=-1119.0 +s hg17.chrM 7440 9 + 16571 TCTAGACAa +s panTro1.chr3 35469203 9 - 209662276 CCTAAgtga +s rn3.chr2 24389713 9 - 258222147 CTTAAATGA +s canFam1.chrM 6884 9 + 16727 CAAAAAtaa +s galGal2.chrM 8181 8 + 16775 TGCAAGAA- +s fr1.chrUn 326223060 9 + 349519338 TCTATCCGA +s danRer1.chrM 7961 9 + 16596 TTCAATCAA + +a score=0.0 +s hg17.chrM 7449 66 + 16571 aaaaggaaggaatcgaaccccccaaagctggtttcaagccaaccccatggcctccatgactttttc + +a score=14522.0 +s hg17.chrM 7449 66 + 16571 aaaaggaaggaatcgaaccccccaaagctggtttcaagccaaccccatggcctccatgactttttc +s panTro1.chr3 35469212 65 - 209662276 gaaaggaaggaatcaaaactccagaaactggtttcaagccagtccaataacc-ccatgactctctc +s rn3.chr2 24389722 59 - 258222147 GAAACAA---GATTAAACCCCTATA----GGCTTCAAGTCAGTCCCATAAGCATCGTTATTTATCC +s canFam1.chrM 6893 66 + 16727 gaaaggaaggaatcgaaccccctaaaattggtttcaagccaatgtcataaccattatgtctttctc + +a score=0.0 +s hg17.chrM 7449 66 + 16571 aaaaggaaggaatcgaaccccccaaagctggtttcaagccaaccccatggcctccatgactttttc + +a score=-609.0 +s hg17.chrM 7515 1 + 16571 ---A +s panTro1.chr3 35469277 1 - 209662276 ---G +s mm5.chrM 6938 1 + 16299 ---A +s canFam1.chrM 6962 1 + 16727 ---C +s galGal2.chrM 8189 1 + 16775 ---A +s fr1.chrUn 326223069 4 + 349519338 GAAA + +a score=172785.0 +s hg17.chrM 7516 230 + 16571 AAAAG--------------------------------------------------------------------GTATTAGAAAAACC---ATTTCATAACTTTGTCAAAGTTAAATTATAGGC-TAA-A-TCCTATATATCTTA------------ATGG-CACATGCAGCGCAAGTAGGTCTACAAGACGCTACTTCCCCTATCATAGAAGAGCTTATCACCTTTCATGATCACGCCCTCATAATCATTTTCCTTATCTGCTTCCTAGTCCTGTATGCCCTTTTCCTAACACTCACAACAAAACTAACTAA-----TACTA +s panTro1.chr3 35469278 230 - 209662276 ATAAG--------------------------------------------------------------------ATATTAGTAAAATT---ATTCCATAACTTTGTCAAAGTTAGTTTATAGGT-TAA-A-TCCTATATGTCTTA------------ATGG-CTCATGCAGTTCAATTAGGACTTCAAGATGCTACATCCCTTATTATAGAAGAACTACTCACTTTCCATGACCACACTCTTACAATTATTTTCCTAATTAGTTCCCTAGTCCTATACATTATTTCCCTAATATTCACAACAAAATTAACTCA-----TACTA +s mm5.chrM 6939 233 + 16299 ATAAG--------------------------------------------------------------------ATATTAGTAAAATC--AATTACATAACTTTGTCAAAGTTAAATTATAGAT-CAATA-ATCTATATATCTTA---T--------ATGG-CCTACCCATTCCAACTTGGTCTACAAGACGCCACATCCCCTATTATAGAAGAGCTAATAAATTTCCATGATCACACACTAATAATTGTTTTCCTAATTAGCTCCTTAGTCCTCTATATCATCTCGCTAATATTAACAACAAAACTAACACA-----TACAA +s rn3.chr2 24389781 236 - 258222147 ATAAG-------------------------------------------------------------TTAT---GCATTAGAAATAGT---ATTATGTTACTTGGTCAGCATTAA-TTATAGTTATAA-A-TCATTTTAGTCTTC------------TTGGATATATCCATTCCAATTAGAATTTTAAGATTTCATATCATCTA--GTAAAAAATTTCCCAGGCTTGCATGAGAACATATTAATAAATGTAAT--TTAATAACTCTCTAGTCTGTTATGTTATTCTGTTGGTACCAATAACAAAATCAACTTACAAAGTACTA +s canFam1.chrM 6963 230 + 16727 AGGAG--------------------------------------------------------------------GTATTAGTAAAAC----ATTACATGACTTTGTCAAAGTTAAATTATAGGT-GAA-ACCCCTATATATCTCT------------ATGG-CGTACCCATTTCAACTCGGATTACAGGACGCAACCTCCCCTATTATAGAGGAGCTACTTCATTTTCATGACCATACACTAATAATTGTATTCTTAATCAGTTCTTTAGTTCTCTATATCATTTCACTAATATTGACTACAAAATTAACCCA-----TACAA +s galGal2.chrM 8190 297 + 16775 GGAAGGAATCGAACCCTCACATGTTGGTTTCAAGCCAACCGCATCAAACCACTTAATGCTTCTTTCTTATGAGACGTTAGTAAACCA---ATTACATAGACCTGTCAAGACTAAATCACAGGTGCAA-A-CCCTGTACATCTCA---T--------ATGG-CCAACCACTCCCAACTAGGCTTTCAAGACGCCTCATCCCCCATCATAGAAGAGCTCGTTGAATTCCACGACCACGCCCTGATAGTCGCACTAGCAATTTGCAGCTTAGTACTCTACCTTCTAACTCTTATACTTATAGAAAAACTATCATC-----AA--- +s fr1.chrUn 326223073 305 + 349519338 GGGAGGAATCGAACCCCCGTAAACTGGTTTCAAGCCAGCTACAAAACCACTCTGTCACTTTCTTCATAAG---ACTCTAGTAAAATGGCAATTACACTACTTTGTCAAGGTAGAATTGTGGGT-TAA-ACCCCCACGTGTCTTA---T---TATTAATGG-CACATCCTTCACAACTAGGGTTTCAAGATGCAGCTTCACCAGTAATAGAAGAACTCCTTCACTTCCACGACCATGCTCTAATAATCGTATTCCTTATTAGCACATTAGTACTTTACATTATTGTTGCTATAGTCTCCACCAAACTAACTAA-----CAAGT +s danRer1.chrM 8046 243 + 16596 ATAAG--------------------------------------------------------------------ACATTAGCAAAAAC---ATTACACCACTTTGTCAAGGTGAAATTACAAGT-TAA-AACCTTGTATGTCTTAACCTAAATTCTAATGG-CACACCCTGCACAACTAGGATTCCAAGACGCAGCATCACCTGTAATAGAAGAACTTTTATGTTTTCACGACCATGCTTTAATAATTGTATTTTTAATCAGCACCTTAGTTCTATACATTATCATCGCAATAGTGTCAACCAAACTAACGAA-----TAAAT + +a score=69426.0 +s hg17.chrM 7746 69 + 16571 ACATCTCAGACGCTCAGGAAATAGAAACCGTCTGAACTATCCTGCCCGCCATCATCCTAGTCCTCATCG +s panTro1.chr3 35469508 69 - 209662276 GCACCATAGATGCCTAAGAAATCGAGACTGTGTGAACTATTTTGCTTGCCATTATCTTAATTTTAATTG +s mm5.chrM 7172 69 + 16299 GCACAATAGATGCACAAGAAGTTGAAACCATTTGAACTATTCTACCAGCTGTAATCCTTATCATAATTG +s canFam1.chrM 7193 69 + 16727 GCACAATAGACGCACAAGAAGTGGAAACAGTATGAACCATTCTACCCGCCATTATCCTAATCCTAATCG +s galGal2.chrM 8487 69 + 16775 ACACCGTAGATGCCCAAGAAGTTGAACTAATCTGAACCATCCTACCCGCTATTGTCCTAGTCCTGCTTG +s fr1.chrUn 326223378 69 + 349519338 ACATTCTAGACTCTCAAGAGATTGAAATTATCTGAACTATCCTACCAGCTATTATTCTTATCCTCATTG +s danRer1.chrM 8289 69 + 16596 TTATTCTAGATTCCCAAGAAATCGAAATCGTATGAACAGTCCTTCCGGCCATCATTCTTATTTTGATTG + +a score=5283.0 +s hg17.chrM 7815 6 + 16571 CCCTCC +s panTro1.chr3 35469577 6 - 209662276 CCCTCC +s mm5.chrM 7241 6 + 16299 CTCTCC +s canFam1.chrM 7262 6 + 16727 CTCTAC +s galGal2.chrM 8556 6 + 16775 CCCTCC +s danRer1.chrM 8358 6 + 16596 CTTTAC + +a score=83513.0 +s hg17.chrM 7821 93 + 16571 CATCCCTACGCATCCTTTACATAACAGACGAGGTCAACGATCCCTCCCTTACCATCAAATCAATTGGCCACCAATGGTACTGAACCTACGA--GT +s panTro1.chr3 35469583 95 - 209662276 CATCCCTACATATTCTGTAAATAACAGATGAAATTAACAACCCTGCTCTTACAGTCAAAGCAATTGGCCACCAATAATATTGAAACTATGAATGT +s mm5.chrM 7247 93 + 16299 CCTCTCTACGCATTCTATATATAATAGACGAAATCAACAACCCCGTATTAACCGTTAAAACCATAGGGCACCAATGATACTGAAGCTACGA--AT +s rn3.chr2 24391128 92 - 258222147 CTTTTCTGTAAATGCTATACATGATGTATGAAATTAATAATTCTTTAATAAAC-TAAAAACTTCAAGCTATCTATAGTACTAAAGTCATGA--AT +s canFam1.chrM 7268 93 + 16727 CTTCCCTCCGAATCCTTTATATAATGGACGAAATTAATAACCCCTCTTTAACCGTGAAAACAATAGGCCACCAATGATACTGAAGCTATGA--AT +s galGal2.chrM 8562 93 + 16775 CCTCCCTCCAAATCCTCTACATAATAGACGAAATCGACGAACCTGATCTCACCCTAAAAGCCATCGGACACCAATGATACTGAACCTATGA--AT +s danRer1.chrM 8364 93 + 16596 CATCACTTCGAATTTTATACCTTATAGATGAAATTAATGACCCCCACGTTACTATTAAAGCCGTAGGACATCAATGGTACTGAAGCTACGA--AT + +a score=322789.0 +s hg17.chrM 7914 535 + 16571 ACACCGACTACGGCGGACTAATCTTCAACTCCTACATACTTCCCCCATTATTCC-----------TAGAACCAGGCGACCTGCGACTCCTTGACGTTGACAATCGAGTAGTACTCCCGATTGAAGCCCCCATTCGTATAATAATTACATCACAAGACGTCTTGCACTCATGAGCTGTCCCCACATTAGGC---TTAAAAACAGATGCAATTCCCGGACGTCTAAACCAAACCACTTTCACCGCTACACGACCGGGGGTATACTACGGTCAATGCTCTGAAATCTGTGGAGCAAACCACAGTTTCATGCCCATCGTCCTAGAATTAATTCCCCTAAAAATCTTTGAAATAGGGCCCGTATTTACCCTATAGCACCCCCTCTACCCCCTCTAGAGCCCACTGTAAAGCTAAC------TTAGCATTAACCTTTTAAGTTAAAGATTAAGAGAACCAACACCTCTTTACAGTGAAATGCCCCAACTAAATACTACCGTATGGCCC------------------ACCATAATTACCCCCATACTCCTTACACTATTCCTCATCACCCAACTAAAAAT- +s panTro1.chr3 35469678 508 - 209662276 ACA--GACTATGAAGAATTAGGCTTCGATTCTTATATA-----------ATTCCAACAGCAGACTTAAAGCCAGGAGAACTTCAACTCCTCAAAGTTGATAACCAAACAATTCTCCCAATAGATATCCCCATCCGTACATTAATCTCATCTGAAGATGTCCTGCACTCATGAACTATCCCCTCATTGGGC---CTGAAAAGGGATGCAATCCCTGGATG-CTAAATCAAACCACCCTAACTGCTACATGACCAGGCCTTTACTATGGACAGTGCTCAGAAATTTGTGGGTCCAACCACAGTGTTATACCTATTGTCCTAGAATTAACCCCCTTAAAATGCTTCGAAACCTGATCCATGTCCACACTATAATA----------------------TCACTGTAAAGCTATC-------TAGCATTAAACTTTTAAGTTAAAGACTGAGCGGATCTACACCTCTCTGCAGTG-AATGCCTCAACTAGATACTTCCACATAATCCATTGTCATTCTGTCAATAACCATAA--------------CTT----TATTCTCCATTATTCAGTTAAAATT- +s mm5.chrM 7340 508 + 16299 ATACTGACTATGAAGACCTATGCTTTGATTCATATATAATCCCAACAAACGACC-----------TAAAACCTGGTGAACTACGACTGCTAGAAGTTGATAACCGAGTCGTTCTGCCAATAGAACTTCCAATCCGTATATTAATTTCATCTGAAGACGTCCTCCACTCATGAGCAGTCCCCTCCCTAGGA---CTTAAAACTGATGCCATCCCAGGCCGACTAAATCAAGCAACAGTAACATCAAACCGACCAGGGTTATTCTATGGCCAATGCTCTGAAATTTGTGGATCTAACCATAGCTTTATGCCCATTGTCCTAGAAATGGTTCCACTAAAATATTTCGAAAACTGATCTGCTTCAATAATTTAATT----------------------TCACTATGAAGCTAA--------GAGCGTTAACCTTTTAAGTTAAAGTTAGAG---ACCTTAAAATCTCCATAGTGATATGCCACAACTAGATACATCAACATGATTT------------------ATCACAATTATCTCATCAATAATTACCCTATTTATCTTATTTCAACTAAAAGT- +s rn3.chr2 24391220 461 - 258222147 ATATAGAATAT--TGACCTATCTATTTATTTCTATGTAATTCCTATAATTGAAC-----------TTAACTCAGAAAAGCTAGAGCTGCTAAAAATGAAGAATTACGTAATAAAACCTATATAGATC----TTCATATATTTATCTTAT----AAGTGTCT----CTCCAGAGCTTTCATCT--TTGGGCCTACTAAAAGCAAGTATAATTCCAGGACA-------GATGCAACTCTAATATCCACAAGACTAGATATGTGATGCCAACAATAATCAGAAATTTAAGGATGTAACTACAGCCTTATATAGGTTATACTTAAATTAATTCCAATTAAGTAGCTTGAGATTGAATTAGTATCAATAGTACAATG----------------------TTATTCTAAGTTTAA--------CACCATTGACC-TTTAAGT--AATAATGAG------TAAAATATTTCATAATT-------TCAATCTGATCTATTAGTA----CT------------------ATTGTAA-TATCT--------GTAGCACTATTTCTC-TTATTCAATTAACAAT- +s canFam1.chrM 7361 524 + 16727 ATACTGACTATGAAGACTTAAACTTTGACTCCTACATAATCCCAACACAAGAAT-----------TAAAGCCAGGAGAACTCCGACTATTAGAAGTAGACAACCGAGTTGTCCTCCCAATAGAAATAACCATCCGAATACTTATCTCTTCAGAAGACGTTTTGCATTCATGAGCCGTTCCATCACTAGGT---CTAAAAACTGACGCTATTCCAGGACGACTAAACCAAACCACCCTTATAGCCATACGACCAGGACTGTACTATGGCCAGTGCTCTGAAATCTGCGGATCTAACCACAGCTTTATACCCATTGTTCTTGAAATAGTCCCCCTATCTTACTTTGAGACCTGATCTGCCTTAATAGTATAACCTAGACTAGATCTAC--------TCATTAAGAAGCTATA-------AAGCATTAACCTTTTAAGTTAAAGACTGGG--AGTTTTAACCTCTCCTTAATGAAATGCCACAGCTAGATACATCCACCTGATTT------------------ATTATAATCTTTTCAATATTTCTCACCCTCTTCATCCTATTTCAACTAAAAAT- +s galGal2.chrM 8655 498 + 16775 ACACAGACTTCAAGGACCTCTCATTTGACTCCTACATAACCCCAACAACAGACC-----------TCCCCCTAGGCCACTTCCGCCTACTAGAAGTCGACCATCGCATTGTAATCCCCATAGAATCCCCCATTCGAGTAATCATCACCGCTGATGACGTCCTCCACTCATGAGCCGTACCCGCCCTCGGG---GTAAAAACAGACGCAATCCCTGGACGACTAAATCAAACCTCCTTCATCACCACTCGACCAGGAGTGTTTTACGGACAATGCTCAGAAATCTGCGGAGCTAACCACAGCTACATACCCATTGTAGTAGAGTCTACCCCCCTAAAACACTTTGAAGCCTGATCCTCACTA-----------------CTGTCATCTTAA----CCATTAAGAAGCTATG----CACCAGCACTAGCCTTTTAAGCTAGAGAGAGGGGACACC----CTCCCCCTTAATGACATGCCCCAATTAAACCCAAACCCATGATTC------------------TCCATCA---------TACTCCTAACTTGATTCACCTTCTCTCTGCTT------ +s fr1.chrUn 326223582 517 + 349519338 ATACAGACTATAGCGA-CTAGCCTTTGACTCATATATAGTCCC-ACACAAGACC-----------TGGCCCCCGGCCAATTCCGCCTTTTAGAAACTGACCATCGAATGGTCGT-TCAGTGGACTCCCCCATTCGAATCCTAGTCTCAGCAGAAGATGTCCTCCACTCCTGAGCCGTCCCCTCTCTAGGT---GTAAAAATGGATGCCGTACCCGGCCGTCTAAACCAAACAGCCTTTATCCTGTCCCGACCTGGTGTTTTCTACGGCCAATGCTCCGAAATCTGCGGAGCTAACCACAGCTTCATACCAATCGTTGTTGAAGCCGTCCCCCTAGAACACTTTGAAAACTGATCCTCACTAATGCTCGAAGATGCCTC------------------ACTAAGAAGCTAAAACGGACACAGCGTTAGCCTTTTAAGCTAAAAATGGTG---CCTACCAAACACCCTTAGTGAAATGCCTCAACTCAACCCCGCACCTTGATTC------------------CTCATTATGGTCTTCTCTTGATGTGTATTCCTAATCTTCCTCCCTCCAAAAAT- +s danRer1.chrM 8457 520 + 16596 ATACAGACTACGAAAACCTAGAATTTGACTCTTATATAGTACCAACCCAAGACC-----------TCACACCAGGGGGCTTTCGGCTTCTTGAAACAGACCATCGAATAGTAGTTCCCAAAGAATCACCAATTCGAATTTTAGTTTCAGCTGAAGACGTACTGCACTCTTGAGCTGTTCCATCATTAGGC---ATTAAAATAGACGCGGTACCCGGACGATTAAACCAAACCGCTTTTATTGTTTCACGTCCAGGTGTATTCTACGGACAATGCTCTGAAATCTGCGGGGCTAACCACAGCTTTATGCCCATTGTAGTCGAAGCCGTCCCACTTGAATTCTTTGAAAACTGATCTTCAGCTATACTAGAAGACGCC------------------TCACTAAGATGCTAAAATTGGA-TAGCGTTGACCTTTTAAGTCAAAACTTGGT--GCTTACCGACCACCCTTAGTG-AATGCCTCAGCTTAATCCAAAACCCTGATTT------------------ATAATCCTTTTTTTCTCATGAGTCATTTTCCTTACTATTATTCCAACCAAAATC + +a score=355.0 +s hg17.chrM 8449 6 + 16571 ATTAAA +s canFam1.chrM 7885 6 + 16727 TTCAAA +s galGal2.chrM 9153 6 + 16775 ATCCAA +s fr1.chrUn 326224100 3 + 349519338 ---ATA +s danRer1.chrM 8977 6 + 16596 ATTAAT + +a score=1195.0 +s hg17.chrM 8449 5 + 16571 ATTAA +s panTro1.chr3 35470186 5 - 209662276 ATTAA +s mm5.chrM 7848 5 + 16299 CTCAT +s canFam1.chrM 7885 5 + 16727 TTCAA +s galGal2.chrM 9153 5 + 16775 ATCCA +s fr1.chrUn 326224100 4 + 349519338 -ATAG +s danRer1.chrM 8977 5 + 16596 ATTAA + +a score=91.0 +s hg17.chrM 8454 1 + 16571 A +s panTro1.chr3 35470191 1 - 209662276 A + +a score=0.0 +s hg17.chrM 8454 1 + 16571 A + +a score=-28769.0 +s hg17.chrM 8455 36 + 16571 CACAAAC--------TACCACCTAC-----CTCCCTCACCAAAGCC------------CAT +s mm5.chrM 7853 46 + 16299 CACAAAC-------ATTCCCACTGG-----CACCTTCACCAAAATC---ACTAACAACCAT +s rn3.chr2 24391681 39 - 258222147 CCCAAAGTATATTTATTCTAATT----------TTTCATCAAAGAA------------TAT +s canFam1.chrM 7891 36 + 16727 -----------TCACTACTACCCAGA-AAACCCGATAACCAAATCT---GC---------- +s galGal2.chrM 9159 36 + 16775 CCCAAAC--------TTCTTTCATT-----CACTCTAACAAACAAC------------CCT +s fr1.chrUn 326224106 37 + 349519338 ------------CACTTATTCCCAAATGAACCCTCCTCTCAAAACA------------CTT +s danRer1.chrM 8983 45 + 16596 -----------CACATTCAACCTAA-----TGACCCAACTCAAGTTGATGCTAAAGAGCAC + +a score=321517.0 +s hg17.chrM 8491 590 + 16571 AAAAATAA---------AAAATTATAACAAA-----------CCCTGAGAACCAAAATGAACGAAAATCTGTTCGCTTCATTCATTGCCCCCACAATCCTAGGCCTACCCGCCGCAGTACTGATCATTCTATTTCCCCCT---CTATTGATCCCCACCT---CCAAATATCTC---ATCAACAACCGACTAATCACCACCCAACAATGACTAA-TCAA-----ACTAACCTCAAAACAAATGATA--GCCATACACAACACTAAAGGACGAACCTGATCTCTTATACTAGTATCCTTAATCATTTTTATTGCCACAACTAACCTCCTCGGACTCCTGCCTCACTCATTTACACCAACCACCCAACTATCTATAAACCTAGCCATGGCCATCCCCTTATGAGCGGGCGCAGTGATTATAGGCTTTCGCTCTAAGATTAAAAATGCCCTAGCCCACTTCTT--ACCACAAGGCACACCTACACCCCTTATCCCCATACTAGTTATTATCGAAACCATCAGCCTACTCATTCAACCAATAGCCCTGGCCGTACGCCTAACCGCTAACATTACTGCAGGCCACCTACTCATGCACCTA-ATT---GGAAGCGCCACCCTAGCAATATCA--------ACCATTAA +s panTro1.chr3 35470215 591 - 209662276 AAAAATAAT-------CAAAAT----GCAAAAACATAAAGCTCTCTGAGAATTAAAATGAAAGAAAATCTATTTACCCCTTTTACTACCCTGACAATTCTAGGCCTACCCGCAGTAGTATTAATCATTTTATTTCCCACCAAACTAT---TTCCAACCT---CCAGTCATCTA---ATTAGTAACCAACTGATTTCCATTCAACAGTGACTAATTCAACTTGTACT------AAAACAAATAATATTACC---CATAACATTAAAGGACAAACCTGATCCCTTATACTGATCTTCCTAATTCTCTTCATTGCCTCAACCAATCTCCTCGGGCCTCTACCCCATTAATTTACACCAACTACCCAATTATCAATAAATCTAGGTATAGCAATCCCCTTATGAGCAGGTGCAGTAATTATAGGCTTCTGCTTTAAGACGAAA-------------ACCTCTTTAGCCACAAGGCACACCTATACCACTTATCTCTATGCTAGTGATCATTGAAACTATTAGCCTATTCATTCAACCAATGGCATTAGCTGTGCGATTAACAGCCAACCTTACAGCCAGACACCTACTAATGCATTTATATCGGAGGAGGAGCCACACTAGTACTATCA--------ACTATCAG +s mm5.chrM 7899 581 + 16299 AAAAGTAA---------AAACC--------------------CCTTGAGAATTAAAATGAACGAAAATCTATTTGCCTCATTCATTACCCCAACAATAATAGGATTCCCAATCGTTGTAGCCATCATTATATTTCCTTCAATCCTAT---TCCCATCCT---CAAAACGCCTA---ATCAACAACCGTCTCCATTCTTTCCAACACTGACTAG-TTAA-----ACTTATTATCAAACAAATAATGCTAATCCACACACCA--AAAGGACGAACATGAACCCTAATAATTGTTTCCCTAATCATATTTATTGGATCAACAAATCTCCTAGGCCTTTTACCACATACATTTACACCTACTACCCAACTATCCATAAATCTAAGTATAGCCATTCCACTATGAGCTGGAGCCGTAATTACAGGCTTCCGACACAAACTAAAAAGCTCACTTGCCCACTTCCT--TCCACAAGGAACTCCAATTTCACTAATTCCAATACTTATTATTATTGAAACAATTAGCCTATTTATTCAACCAATGGCATTAGCAGTCCGGCTTACAGCTAACATTACTGCAGGACACTTATTAATACACCTA-ATC---GGAGGAGCTACTCTAGTATTAATA--------AATATTAG +s rn3.chr2 24391720 540 - 258222147 CAGAGCAT--------CAGAAC----ACAAGTCT--------CAATGAGAAAAAAGATGGCTGAAATTTTCTTTAGCTATAGCACAATCTCAGTGATAAAAGTACTAACTACAGTTGTTTTAATCACCTCATTTTCTAC----CTCT---TTTC--------------ACCTA---AACAAAAATTAATTAACCTTTATTCAA---TGATTAT-GCCATTAATGCT------AAAACAAATAGCA------------ACAATAAAGGCCAGACTTCATTTCTAATATTAACTTCCTTCCTC----TTATTAGGTAAGCAAACTCACTATGATTATTACCATATTCACTTATGTCAACTTTCCAATTATCAATAAA-CTAGGTGTGGCTCCTCCAGT-TGAGCGGAAATAGTCATTATTAGCTTCTGAC-TGAAATGAGAGCCCCATCAGACCATTTTCT--GCTACAAGAAACACTCATTCCATTTCTCCCCATGTCACTAACTATT---------------CCTGTTTAATCCACATCCCTGTCTGTATGATTATCAGGCAATACTGTGGCAGGCCACAAACTGTTCATCCTTCATT---GGCAGAGTCACATTAGTTTTAGCA--------TCCATTAA +s canFam1.chrM 7928 589 + 16727 AAAATTGCTG-GTCAACATAAT--------------------CCTTGAGAAAACAAATGAACGAAAATCTATTCGCTTCTTTCGCTGCCCCCTCAATAATAGGTCTCCCTATTGTGGTACTGATCGTCATATTCCCTTCCATTTTAT---TCCCAACAC---CCAGTCGCCTA---ATCAATAATCGGTTAATCTCCATTCAGCAATGACTAA-TTCA-----ACTAACATCAAAACAAATACTA--GCAATTCATAACCAAAAGGGACGAACCTGAGCTCTCATACTTATATCACTAATTCTATTTATTGGCTCAACTAATCTACTTGGACTATTACCTCACTCATTTACGCCCACAACACAACTCTCTATAAACCTCGGAATAGCAATTCCCCTATGAGCAGGGACAGTAATTACCGGTTTCCGCTATAAAACCAAAGCATCCTTAGCACACTTTCT--ACCCCAAGGCACCCCTCTCCCCCTAATTCCAATACTAGTAGTCATCGAAACTATTAGTCTATTTATTCAACCCATGGCTCTAGCCGTTCGATTAACCGCCAATATTACTGCAGGACACCTCCTAATCCATTTG-ATT---GGAGGGGCTACCTTAGCTCTTATC--------AATATTAG +s galGal2.chrM 9195 609 + 16775 -----------GCAAACAAAATTACAACAACTAAACCCACC-CCCTGAACCTGACCATGAACCTAAGCTTCTTCGACCAATTCTCAAGCCCCTGCCTACTAGGAATCCCTCTAATCCTCCCATCACTCCTTCTTCCAGCCCTCCTAC---TTCCATCAC---CAGGAAACCGATGGATCAACAACCGCCTCTCCACCATCCAACTCTGATTCA-CCCA-----CCTAATCACAAAACAACTAATA--ACCCCCCTAAACAAGGCAGGTCACAAATGAGCCCTCCTACTCACCTCACTTATCCTAATACTCCTCTCCATTAACCTCCTAGGCCTCCTCCCCTACACCTTCACCCCAACTACCCAACTATCAATAAACATGGCCTTAGCCCTGCCACTATGACTAGCCACCTTACTAACAGGCCTGCGAAACCAACCCTCCGCCTCCTTAGGACACCTACT--CCCTGAAGGCACCCCCACCCCACTGATTCCAGCCCTAATCATAATCGAAACAACCAGCCTACTTATTCGGCCATTAGCCCTAGGAGTACGCCTAACAGCAAACCTCACAGCTGGTCACCTACTTATCCAACTT-ATC---TCTACAGCCACAATCGCCCTACTACCAATAATGCCATCAA +s fr1.chrUn 326224143 588 + 349519338 ---------GCCCCAAAGAAAT-----CAAA-----------CCCTGACCCTGATCATGACACTAAGCTTCTTCGACCAATTTCTTAGCCCCACCGCCTTTGGTATTCCCCTGATTGCCCTCGCTCTCCTATTACCTTGGACCCTCT---TCCCCACACCAACCAACCGTTGA---ACCAACAATCGTCTTTTAACACTTCAAAGCCAATTTA-TTAA-----TCGATTTACTCAACAACTGCTC--CTCCCACTAAACATAGGAGGGCACAAATGAGCCCTTATATTCGCCTCATTAATAGTGTTCCTAATTACCATTAATATGCTAGGACTCCTTCCATACACATTCACCCCCACCACACAGCTTTCCGTAAATATAGCCCTAGCTGTACCCCTATGACTCGCAACAGTAATCATCGGAATACGAAACAACCCAACAGCAGCCCTAGGCCACCTTCT--TCCAGAAGGCACCCCCAACGCTCTAATCCCTATCCTAATTATTATCGAAACTGTCAGCCTCTTCATTCGACCTTTAGCACTAGGAGTTCGACTAACCGCTAACCTCACAGCAGGCCACCTGTTGATTCAACTA-ATC---GCTACAGCAGCTTTCGTACTCCTC--------CCCCTTAT +s danRer1.chrM 9028 580 + 16596 ----------------AAAAATGACACTTGA-----------AACTGA------CCATGATAACAAGCTTCTTCGATCAATTCGCGAGCCCCTACCTTTTAGGTATCCCCCTTATCCTCGTTGCCATACTTCTACCTTGACTTCTTT---TTCCTGCTCCAACATCACGATGA---ATCAACAATCGACTTATCACCGTCCAAACATGATTGA-CTGG-----ACGATTCACAAACCAACTTATG--ACCCCACTAAACTTTAGCGGCCACAAATGAGCACTTTTATTTGCCTCTCTAATAGTATTCTTAATCACAATTAATCTTTTAGGACTTCTTCCTTATACTTTTACACCAACAACCCAACTCTCTCTGAATATAGGATTTGCAGTACCCCTATGACTTGCCACAGTAATTATCGGAATAAAAAATCAACCGACTATTGCCCTAGGACATCTTTT--ACCAGAAGGAACCCCCATCCCATTAATTCCGGCCCTTATTATTATCGAAACAATTAGCTTATTTATTCGACCATTAGCTTTAGGGGTACGACTTACTGCAAACCTCACAGCAGGCCACCTACTAATTCAACTT-ATT---GCCACAGCAGTATTTGTTCTACTA--------CCAATAAT + +a score=-3507.0 +s hg17.chrM 9081 17 + 16571 -CCTTCCCTCTACACTTA +s canFam1.chrM 8517 17 + 16727 -CGCGACCACAGCTTTTA +s galGal2.chrM 9808 17 + 16775 -CGCCCTAACGGCACTCA +s fr1.chrUn 326224732 16 + 349519338 -CCAACTGTCGCCATTC- +s danRer1.chrM 9608 17 + 16596 ACCAGCAGTAGCAATTT- + +a score=-5282.0 +s hg17.chrM 9081 7 + 16571 -CCTTCCC +s panTro1.chr3 35470806 7 - 209662276 -TCTTCCC +s mm5.chrM 8480 7 + 16299 -CCCACCA +s canFam1.chrM 8518 6 + 16727 -GCGACC- +s galGal2.chrM 9806 5 + 16775 -TCCGC-- +s fr1.chrUn 326224732 6 + 349519338 -CCAACT- +s danRer1.chrM 9608 7 + 16596 ACCAGCA- + +a score=-1082.0 +s hg17.chrM 9088 10 + 16571 TCTACACTTA +s mm5.chrM 8487 10 + 16299 ACAGCTACCA +s canFam1.chrM 8524 10 + 16727 ACAGCTTTTA +s galGal2.chrM 9815 10 + 16775 ACGGCACTCA +s fr1.chrUn 326224739 9 + 349519338 TCGCCATTC- +s danRer1.chrM 9615 10 + 16596 GTAGCAATTT + +a score=894.0 +s hg17.chrM 9098 2 + 16571 TC +s mm5.chrM 8497 2 + 16299 TT +s rn3.chr2 24392260 2 - 258222147 TT +s canFam1.chrM 8534 2 + 16727 TC +s galGal2.chrM 9825 2 + 16775 TC +s fr1.chrUn 326224748 2 + 349519338 TG +s danRer1.chrM 9625 2 + 16596 TA + +a score=-1734.0 +s hg17.chrM 9100 12 + 16571 ---ATCTTCACAATT +s fr1.chrUn 326224752 10 + 349519338 ---ATCAACCCTA-- +s danRer1.chrM 9627 12 + 16596 ACTGCCTCCGTC--- + +a score=-3437.0 +s hg17.chrM 9100 9 + 16571 ---ATCTTCACA +s mm5.chrM 8499 9 + 16299 ---ACATTTATT +s rn3.chr2 24392262 8 - 258222147 ---ATTTGCAG- +s canFam1.chrM 8536 9 + 16727 ---ACTTTTATT +s fr1.chrUn 326224750 9 + 349519338 ---ACATCAACC +s danRer1.chrM 9627 9 + 16596 ACTGCCTCC--- + +a score=1618.0 +s hg17.chrM 9109 3 + 16571 ATT +s panTro1.chr3 35470834 3 - 209662276 ATT +s mm5.chrM 8508 3 + 16299 ATT +s rn3.chr2 24392270 3 - 258222147 GCC +s canFam1.chrM 8545 3 + 16727 ATT +s fr1.chrUn 326224759 2 + 349519338 -CT +s danRer1.chrM 9636 3 + 16596 GTC + +a score=111212.0 +s hg17.chrM 9112 101 + 16571 CTAATTCTACTGACTATCCTAGAAATCGCTGTCGCCTTAATCCAAGCCTACGTTTTCACACTTCTAGTAAGCCTCTACCTGCACGACAACACATAATGACC +s panTro1.chr3 35470837 101 - 209662276 CTAATCTTACTGAGCATCCTTGAATTCACCGTAGCCCTTATTCAGGCCTATGTCTTTGCACTACTTGTAAGCCTTTACCTATATGAAAACACATAATGTCC +s mm5.chrM 8511 101 + 16299 TTACTTCTACTCACAATTCTAGAATTTGCAGTAGCATTAATTCAAGCCTACGTATTCACCCTCCTAGTAAGCCTATATCTACATGATAATACATAATGACC +s rn3.chr2 24392273 88 - 258222147 TTCATCAAATGGATTATCTCAATATTACCTTTCTTTTCAATT--------TGCTTTCATGCT-----TAGCCTTTTACCTACAGGATAGTACTTCAAGGCC +s canFam1.chrM 8548 101 + 16727 CTAATCCTACTTACGATCCTAGAATTTGCTGTTGCCTTAATTCAAGCCTATGTTTTTACCTTACTAGTGAGTCTATACTTACATGACAACACCTAATGACC +s galGal2.chrM 9827 101 + 16775 CTATTCCTACTAACCATCCTAGAAGTGGCAGTAGCAATAATCCAAGCCTACGTCTTCGTCCTCCTCCTAAGCCTCTACTTACAAGAAAATATTTAATGGCA +s fr1.chrUn 326224762 101 + 349519338 TTATTCCTCCTGACACTTCTAGAAGTCGCCGTCGCAATAATCCAAGCCTATGTTTTCGTACTTCTTCTAAGCCTCTACCTACAAGAAAACGTTTAATGCCC +s danRer1.chrM 9639 101 + 16596 CTTTTCTTACTTACCCTGCTAGAAGTTGCAGTAGCAATAATCCAAGCCTACGTCTTTATTCTTCTTTTAAGCCTATATCTGCAAGAAAACATTTAATGGCC + +a score=140967.0 +s hg17.chrM 9213 202 + 16571 CACCAATCACATGCCTATCATA---TAGTAAAACCCAGCCCATGACCCCTAACAGGGGCCCTCTCAGCCCTC----CTAATGACCTCCGG-CCTAGCCATGTGATTTCACTTCCACTCCATAACGCTCCTCATA-----------CTAGGCC------------------TACTAACCAACACACTAAC--CATATACCAATGGTGGCGCGATGTAACACGAGAAAGCACATACCAAGGCC +s panTro1.chr3 35470938 204 - 209662276 CACCAAACACATGCCTACCATA---TAGTCAAACCCAGCCCCTGACCACTAACAGGAGCTCTCTCAGCTCTC----CTAATAACATCTGG-CCTGGCCATGTGATTTCACTTTAACTCTATCAC---CCTTTTA--------ACCCTAGGCT------------------TACTAACCAACACACTAACTATATATACCAGTGATGACGTGACATTATCCAAGAAAGTACATTTCAAGGCC +s mm5.chrM 8612 202 + 16299 CACCAAACTCATGCATATCACA---TAGTTAATCCAAGTCCATGACCATTAACTGGAGCCTTTTCAGCCCTC----CTTCTAACATCAGG-TCTAGTAATATGATTTCACTATAATTCAATTAC---ACTATTA--------ACCCTTGGCC------------------TACTCACCAATATCCTCAC--AATATATCAATGATGACGAGACGTAATTCGTGAAGGAACCTACCAAGGCC +s rn3.chr2 24392361 234 - 258222147 TCCCTGAATGACACCTATTATATTGTAGTCAATTCTTGTCCCCAAACACTTACAGAACCATTCCCAGCCAGCAAGGTTCACGACATCCAGTTTTGATAATATGATTCCACTTTTACTCCATTGT-----TTTTAGTAAAACAATACTAAACTAATAATGTTTAGTATTGATGCCTAGCAGAATCTTAAC--AATATATCAGTTAGGTTGGGATGCAACCCAGGAAGCTATATTTCAAGACC +s canFam1.chrM 8649 202 + 16727 CACCAAACTCACGCTTACCACA---TAGTCAACCCAAGCCCATGACCGCTGACAGGGGCCCTTTCTGCCCTC----CTTATAACATCGGG-TCTTATCATATGATTTCACTATAACTCAATAGC---CCTACTT--------ACATTAGGAT------------------TCACAACCAACCTGTTAAC--CATATGCCAGTGATGACGAGATGTGATCCGAGAAGGCACATTCCAAGGAC +s galGal2.chrM 9928 202 + 16775 CACCAAGCACACTCCTACCACA---TAGTTGACCCAAGCCCATGACCAATCTTCGGCGCAGCCGCAGCACTA----CTAACCACCTCTGG-CCTAATCATATGGTTCCACTACAGCTCGACCAC---CCTACTG--------ACAATAGGCC------------------TCCTCTCTATACTTCTAGT--CATGCTGCAATGATGACGAGACGTAGTCCGAGAAAGCACCTTCCAGGGCC +s danRer1.chrM 9740 202 + 16596 CACCAAGCACATGCATATCACA---TAGTTGACCCAAGCCCATGACCACTAACTGGAGCTGTAGCCGCCCTA----TTAATATCATCTGG-CTTAGCAATTTGGTTTCACCTTCACTCAATGAC---ATTAATT--------GTTCTAGGAA------------------TAATTCTTCTTATTTTAAC--TATAATCCAATGATGACGAGACATTATTCGAGAAGGGACCTTTCAAGGCC + +a score=6726.0 +s hg17.chrM 9415 8 + 16571 ACCACACA +s panTro1.chr3 35471142 8 - 209662276 CCCACACA +s mm5.chrM 8814 8 + 16299 ACCACACT +s canFam1.chrM 8851 8 + 16727 ATCATACC +s galGal2.chrM 10130 8 + 16775 ACCACACC +s danRer1.chrM 9942 8 + 16596 ACCATACC + +a score=20191.0 +s hg17.chrM 9423 19 + 16571 CCACCTGTCCAAAAAGGCC +s panTro1.chr3 35471150 19 - 209662276 TCAATTGTCCAAAAAGGCC +s mm5.chrM 8822 19 + 16299 CCTATTGTACAAAAAGGAC +s rn3.chr4 151131657 18 + 187371129 -CCATTTTACAGAAAGGCC +s canFam1.chrM 8859 19 + 16727 CCTATTGTACAAAAAGGAC +s galGal2.chrM 10138 19 + 16775 CCAACTGTCCAAAAGGGCC +s danRer1.chrM 9950 19 + 16596 CCGCCCGTACAAAAAGGGT + +a score=138985.0 +s hg17.chrM 9442 130 + 16571 TTCGATACGGGATAATCCTATTTATTACCTCAGAAGTTTTTTTCTTCGCAGGATTTTTCTGAGCCTTTTA--CCACTCCAGCCTAGCCCCTACCCCCCAACTAGGAGGGCACTGGCCCCCAACAGGCATCAC +s panTro1.chrUn_random 213823712 130 - 240967748 TTCGGTATGGAATAATTTTATTCATCATCTCAGAAGTCTTTTTCTTTGCTGGATTCTTCTGAGCATTCTA--CCACTCCAGCCTAGCCCCTACCCCTCAACTAGGAAGACACTGACCCCCAACAGGCATCAC +s mm5.chrM 8841 130 + 16299 TACGATATGGTATAATTCTATTCATCGTCTCGGAAGTATTTTTCTTTGCAGGATTCTTCTGAGCGTTCTA--TCATTCTAGCCTCGTACCAACACATGATCTAGGAGGCTGCTGACCTCCAACAGGAATTTC +s rn3.chr4 151131675 125 + 187371129 TTCGTTATGAAATAGCT------ATTGTATCTGAAGTCTTTTTCTTGACAGGACTTTTCTGAGCTTTCTGCTCCACTCCAGCCTTGTCCC-GCACATGACCTAGAGGGCTGCTGGCCACCTACAGGAATTAC +s canFam1.chrM 8878 130 + 16727 TACGATACGGAATAGTTCTTTTTATCGTATCAGAAGTATTTTTCTTTGCAGGCTTCTTCTGAGCCTTTTA--CCACTCCAGCCTAGCCCCTACTCCTGAACTTGGGGGTTGCTGACCTCCTACCGGCATTAT +s galGal2.chrM 10157 130 + 16775 TACGATACGGAATAATCCTTTTCATTACATCAGAGGCCTTCTTCTTCCTAGGATTCTTCTGAGCCTTCTT--CCACTCAAGCCTAGCCCCAACACCAGAACTGGGGGGCCAATGGCCCCCAACAGGAGTCAA +s danRer1.chrM 9969 130 + 16596 TGCGGTACGGTATAATCCTATTTATTACCTCAGAGGTATTTTTTTTCCTAGGATTTTTCTGAGCTTTTTA--TCATTCAAGTTTAGCCCCCACCCCTGAACTAGGGGGATGTTGACCACCCACAGGGCTAAC + +a score=45530.0 +s hg17.chrM 9572 68 + 16571 CCCGCTAAATCCCCTAGAAGTCCCACTCCTAAACACATCCGTATTACTCGCATCAGGAGTATCAATCA +s panTro1.chrUn_random 213823842 68 - 240967748 TCCACTCAATCCCCTAGAAGTCCCACTCTTAAACACGTCTGTACTACTCGCATCGGGAGTTTCAATTA +s mm5.chrM 8971 68 + 16299 ACCACTTAACCCTCTAGAAGTCCCACTACTTAATACTTCAGTACTTCTAGCATCAGGTGTTTCAATTA +s canFam1.chrM 9008 68 + 16727 TCCTCTTAACCCATTAGAAGTGCCTCTACTCAACACCTCAGTCCTCCTAGCCTCCGGAGTATCTATTA +s galGal2.chrM 10287 68 + 16775 ACCCCTAAACCCCCTTGAAGTACCCCTACTAAATACAGCAATCCTCCTAGCCTCAGGAGTCACCGTTA +s danRer1.chrM 10099 68 + 16596 AACTCTTGACCCATTTGAAGTGCCGCTCCTCAATACAGCTGTTTTGCTAGCATCCGGAGTAACAGTAA + +a score=151784.0 +s hg17.chrM 9640 173 + 16571 CCTGAGCTCACCATAGTCTAATAGAAAACAACCGAAACCAAATAATTCAAGCACTGCTTATTACAATTTTACTGGGTCTCTATTTTACCCTCCTACAAGCCTCAGAGTACTTCGAGTCTCCCTTCACCATTTCCGACGGCATCTACGGCTCAACATTTTTTGTAGCCACAGGC +s panTro1.chrUn_random 213823910 173 - 240967748 CTTGAGCTCACCATAGCCTAATAGAGAACAATTGTAATCAAGCAATTCAAGCACTACTTATCACAATCTTACTAGGCATCTACTTCACCCTCCTACAAGTTTCAGAATACTTTGATGCCCCCTTTACTATCGCCAATGGTATCTATGGTTCAACATGTTTTGTAGCTACGGGC +s mm5.chrM 9039 173 + 16299 CATGAGCTCATCATAGCCTTATAGAAGGTAAACGAAACCACATAAATCAAGCCCTACTAATTACCATTATACTAGGACTTTACTTCACCATCCTCCAAGCTTCAGAATACTTTGAAACATCATTCTCCATTTCAGATGGTATCTATGGTTCTACATTCTTCATGGCTACTGGA +s rn3.chr10 102082388 167 - 110733352 CCTGAGTCCATCATTGTCTAACAGAAGGAAAACAAAAAGATAGAAACCAAGCCTTATTTATTACAATTTTCCTGG------ACTCTACTGCCCACCAAGCTTCAGAATATTTTGAAACACCAGTCTCCATCTGAGACAGAATTTATGGATCAACATTCTTCATAACAACAGAG +s canFam1.chrM 9076 173 + 16727 CTTGAGCCCATCATAGTTTAATAGAAGGTAATCGCAAACATATACTTCAAGCCTTATTCATTACAATCTCCTTAGGCGTATATTTTACGCTATTACAGGCCTCCGAATACTATGAGACATCTTTTACAATCTCCGATGGGGTATACGGATCTACCTTTTTTATAGCCACTGGA +s galGal2.chrM 10355 173 + 16775 CATGGGCTCACCACAGCATCACAGAAGGAAACCGAAAACAAGCCATCCACGCACTAACTCTCACAATCCTCCTAGGATTCTATTTCACAGCCCTACAAGCAATAGAGTACCATGAAGCCTCCTTCTCAATCGCTGACAGCGTCTACGGCTCCACCTTCTTCGTCGCTACAGGG +s danRer1.chrM 10167 173 + 16596 CATGAGCACATCACAGCCTCATGGAAGGAGAACGAAAACAAGCCATTCAATCTCTTGCTCTTACAATTCTACTAGGATTGTACTTCACAGCACTTCAGGCTATAGAATACTATGAAGCCCCATTTACAATTGCAGACGGAGTATATGGCTCAACATTCTTTGTAGCTACAGGG + +a score=106761.0 +s hg17.chrM 9813 128 + 16571 TTCCACGGACTTCACGTCATTATTGGCTCAACTTTCCTCACTATCTGCTTCATCCGCCAACTAATATTTCACTTTACATCCAAACATCACTTTGGCTTCGAAGCCGCCGCCTGATACTGGCATTTTGT +s panTro1.chrUn_random 213824083 128 - 240967748 TTCCACGGGCTCCCCGTCATCATTGGTTCAACATTCCTTACTGTTTGCCTTATCCGCCAACTATTATATCCTTTTACATCCAAGTACCACTTCGGCTTTGAACCCCCCACTTGATACTGACACTTTGT +s mm5.chrM 9212 128 + 16299 TTCCATGGACTCCATGTAATTATTGGATCAACATTCCTTATTGTTTGCCTACTACGACAACTAAAATTTCACTTCACATCAAAACATCACTTCGGATTTGAAGCCGCAGCATGATACTGACATTTTGT +s canFam1.chrM 9249 128 + 16727 TTTCACGGATTACACGTAATTATTGGCTCTACATTCCTCATCGTGTGCTTCCTCCGACAGCTATACTACCACTTCACATCAAACCACCACTTCGGATTTGAAGCCGCTGCATGATATTGACACTTTGT +s galGal2.chrM 10528 128 + 16775 TTCCACGGACTACATGTAATCATTGGATCATCCTTTTTAACAGTTTGCCTCCTACGACTAATCAAATTCCACTTCACACCAAACCACCACTTCGGATTTGAAGCAGCAGCCTGATACTGACACTTCGT +s danRer1.chrM 10340 128 + 16596 TTTCATGGTCTACACGTTATTATTGGATCAACCTTTTTAGCTGTATGCCTTCTACGCCAAGTTTTATTTCACTTCACATCAGACCACCACTTTGGTTTTGAAGCTGCCGCTTGATATTGACACTTCGT + +a score=8380.0 +s hg17.chrM 9941 16 + 16571 AGATGTGGTTTGACTA +s mm5.chrM 9340 16 + 16299 AGACGTAGTCTGACTT +s canFam1.chrM 9377 16 + 16727 TGATGTAGTCTGGCTA +s galGal2.chrM 10656 16 + 16775 AGACATCATCTGACTC +s danRer1.chrM 10468 16 + 16596 CGACGTAGTCTGACTA + +a score=27771.0 +s hg17.chrM 9957 42 + 16571 TTTCTGTATGTCTCCATCTATTGATGAGGGTCTTACTCTTTT- +s mm5.chrM 9356 42 + 16299 TTCCTATACGTCTCCATTTATTGATGAGGATCTTACTCCCTT- +s rn3.chr4 170558950 38 - 187371129 TTTCTATACAT----ACCTATTGATGAGGAGCACACATTCTT- +s canFam1.chrM 9393 42 + 16727 TTCTTGTATGTATCTATTTATTGATGAGGATCCTATTTCTTT- +s galGal2.chrM 10672 42 + 16775 TTCCTCTACATATCCATATACTGATGAGGATCTTGCTCTTCT- +s danRer1.chrM 10484 43 + 16596 TTCCTCTACGTATCAATCTATTGATGAGGCTCATAGCCTTTCT + +a score=148393.0 +s hg17.chrM 9999 266 + 16571 AGTATAAATAGTACCGTTAACTTCCAATTAACTAGTTTTGAC--AACATTCAAAAAAGAGTAATAAACTTCGCCTTA---ATTTTAATAATCAACACCCTCCTAGCC---TTACT---------ACTAATAATTATTA--CATTTTGACTACCACAACTCAACGGCTACATAGAAAAATCCACCCCTTACGAGTGCGGCTTCGACCCTATATCCCCCGCCCGCGTCCCTTTCTCCATAAAATTCTTCTTAGTAGCTATTACCTTCTTATTATTTGATCTAGAAAT +s panTro1.chr3 35471726 266 - 209662276 AGTATAAGCAGTACCATTGACTTCTAATCAATTAGTTTCGAT--ATTATCCAAAAGTGAGTAATCAACTTGACATTA---GCTCTAGTAACCAACACCTTACTGGCCCTATTACT---------ACTAATAA-----AAGCATTTTGGCTCCCACAACTTAATATTTATATAGAAAAATCCAACTCCTATGAATGTGGATTTCACCCAATAACCTCTGCCCACCTCCCCTTTTCCATAATATTCTTCCTAGGAGCCGTCACATTCCTCCTCTTTGACTTAGAGAT +s mm5.chrM 9398 266 + 16299 AGTATAATTAATATAACTGACTTCCAATTAGTAGATTCTGAA--TAAACCCAGAAGAGAGTAATTAACCTGTACACT---GTTATCTTCATTAATATTTTATTATCC---CTAAC---------GCTAATTCTAGTTG--CATTCTGACTCCCCCAAATAAATCTGTACTCAGAAAAAGCAAATCCATATGAATGCGGATTCGACCCTACAAGCTCTGCACGTCTACCATTCTCAATAAAATTTTTCTTGGTAGCAATTACATTTCTATTATTTGACCTAGAAAT +s rn3.chr4 170558988 240 - 187371129 AGTATAATCAG-----------TCCAGCCAGTTAGATGTAGCG-TAAATCTAGATAGTAATCATAACTTTATACATA-------TAACAACTAACATCAACCTATCC---CTACG---------TTGAATGTCCATTG--CATGTTGATTACCTCAACTTAATATTTATACAGAAAAAGCAAACCCCTATGAATGTGGGTTTGACCTAATAGGCTCATCGAACCTTTCATTTTCCATAAAGTTTTTCCTTGT----------TTTCCACCATTCAG--TACAGCT +s canFam1.chrM 9435 266 + 16727 AGTATAACTAGTACAATTGACTTCCAATCAGTTAGCTCCAGA--TCAACCTGGAAAGAAGTAATAAACGTTATATTA---ACTTTGATAACTAATGTAACCCTAGCA---TCCTT---------ACTTGTACTAATCG--CATTCTGACTTCCCCAGCTAAATATCTATACAGACAAGACAAGCCCCTACGAATGTGGTTTTGACCCCATGGGATCTGCTCGCCTACCTTTCTCTATAAAATTTTTCCTAGTTGCCATCACATTTCTGCTTTTCGACCTAGAAAT +s galGal2.chrM 10714 270 + 16775 AGTATACTCATTACAACTGACTTCCAATCTTTAAAATCTGGTA-TCAACCCAGAGAAGAGCAATGAAC------------ACACTTACATTTATACTCTCACTATCCTTTCTACTAAGCGCTGCACTAACTACTATAA--ACTTTTGACTAGCCCAAATAGCCCCAGACACAGAAAAACTGTCACCGTACGAATGCGGATTTGACCCACTAGGATCAGCCCGACTCCCATTCTCAATCCGATTCTTCCTAGTAGCCATCCTATTCCTTTTATTCGACCTAGAAAT +s danRer1.chrM 10527 271 + 16596 AGTATAACCAGTATAAATGACTTCCAATCATTTGGTCTTGGTGAAAAATCCAGGGAAAGGTAATGAATTTATTTGCAACTATTCTTATTATTATAACGACCTTATCA---TTGGT---------CTTAGCTCTAGTAT--CATTTTGACTACCACAAATGAACTCTGATACAGAAAAGCTATCACCATATGAATGCGGATTTGATCCACTAGGGTCCGCCCGCCTACCATTTTCATTACGATTTTTCTTAGTAGCAGTTTTATTCCCTTTATTTGACTTGGAAAT + +a score=73927.0 +s hg17.chrM 10265 153 + 16571 TGCCCTCCTTTTACCCCTACCATGAGCCCTACAAACAACTAA---CCTGCCACTAATAGTTATGTCATC--------CCTCTTATTAATCATCATCCTAGCCCTAAGTCTGGCCTATGAGTGA----CTACAAAAAGGATTAGACTGAGCCGAAT---TGGTATATAGTTT +s panTro1.chr3 35471992 153 - 209662276 TGCTGTACTACTACCTCTGCCATGAGCCCTTCAAACAACCAA---CCTGACACTAATA--------ATCAGCACAGCCCTTGTATTAGTTACCATTTCAATCCTAGGCTTGACTTATGAATGAGCCCC----AAAAGTGTTAGACTGAGTTGAAT---TGGTAAATAGTTT +s mm5.chrM 9664 156 + 16299 TGCTCTTCTACTTCCACTACCATGAGCAATTCAAACAATTAAAACCTCTACTATAATA--------ATT---ATAGCCTTTATTCTAGTCACAATTCTATCTCTAGGCCTAGCATATGAATGA----ACACAAAAAGGATTAGAATGAACAGAGTAAATGGTAATTAGTTT +s rn3.chr16 53341827 156 + 90224819 TGCCTTATTACTTCCTCTGCCTTGAGTAATTCAAACAACTAGCATTATTACAATAATA--------TTT---TCAACTTTTATTCTAGTCATTATTTTATCCCTTGGGTTAATCTATCAATGA----TTACAAAAAGGACTAGAATGGACAGAATAATTGGTAATTAGTTT +s canFam1.chrM 9701 154 + 16727 TGCACTCCTACTCCCACTTCCCTGAGCGTCACAAACCAACAA---GCTAACAACAATA--------CTTATCATAGCACTCCTACTAATCTCCCTCCTAGCTGCGAGCCTAGCGTATGAATGG----ACCGAAAAGGGGCTAGAATGAACCGAATA--TGATAATTAGTTT +s galGal2.chrM 10984 156 + 16775 CGCCCTGCTTCTTCCCCTTCCATGAGCCATCCAACTTGCACA---CCCTATAATAACC--------CTTACTTGAGCCACCACTATCATCGCCCTCCTCACATTTGGTCTCATCTACGAATGA----ACTCAGGGCGGCTTAGAATGAGCAGAATAACAGAAAGTTAGTCT +s danRer1.chrM 10798 153 + 16596 TGCTCTCCTATTACCACTCCCATGAGGAGATCAACTTAATAA---CCCAATAGAAACT--------CTCTTTTGAGCTATAACAGTACTGATTTTGCTAACACTAGGACTAGCCTACGAATGA----GCCCAAGGCGGCCTTGAATGAGCAGAGT---AGGGAGCTAGTCC + +a score=144767.0 +s hg17.chrM 10418 376 + 16571 -AAA--CAAAACGAATGATTTCGACTCATTAAATTATGATA----ATCATATTTACCAA-ATGCCCCTCATTTACATAAATATTATACTAGCATTTACCATCTCACTTCTAGGAATACTAGTATATCGCTCACACCTCATATCCTCCCTACTATGCCTAGAAGGAAT-----AATACTATCGCTGTTCATTATAGCTACTCTCATAACCCTCAA---------CACCCACTCCCTCTTAGC----------CAATATTGTGCCTATTGCCATACTAGTCTTTGCCGCCTGCGAAGCAGCGGTGGGCCTAGCCCTACTAGTCTCAATCTCCAACACATATGGCCTAGACTACGTACATAACCTAAACCTACTCCAATGCTA------------------------------AAACTAATCGTCCCAACAATTATATTAC +s panTro1.chr3 35472145 374 - 209662276 -AAG-TCAAAATAAATGATTTTGACTCATTAGATTATGATA---GACCATATTTACCAA-ATGACCACtattaatattattattatattaGCATACACCATATCACTGCTAGGAGTATTAGTCTATCAATCCCACCTAATATCATCCCTATTATGCCTAGAAGGCATCAATCAATA-TAT--------ATCATAAATACTCTTATAACTTTAAATATACATTTCACCC---------TAGC--ATCCA---TAATA-----CCCATTATCCTCTTAGTATTTGCTGCCTGAGAAGCCGCAGTGGGCCTTGCCTCACTAGTTTCAATCTCCAGGACATATGGCCTAGATTACATACAAAATCTAAGTTTACTTCAATGCTA------------------------------AAAATTATTACTCCAACAATTATACTGT +s mm5.chrM 9820 380 + 16299 -AAA--AAAAATTAATGATTTCGACTCATTAGATTATGATGA-TGTTCATAATTACCAATATGCCATCTACCTTCTTCAACCTCACCATAGCCTTCTCACTATCACTTCTAGGGACACTTATATTTCGCTCTCACCTAATATCCACATTACTATGCCTGGAAGGCAT-----AGTATTATCCTTATTTATTATAACTTCAGTAACTTCCCTAAA---------CTCCAACTCCAT--AAGC---TCCATACCAATC-----CCCATCACCATCTTAGTTTTCGCAGCCTGCGAAGCAGCTGTAGGACTAGCCCTACTAGTAAAAGTTTCAAACACGTACGGAACAGATTACGTCCAAAATCTCAACCTACTACAATGCTA------------------------------AAAATTATTCTTCCCTCACTAATGCTAC +s rn3.chr2 24394176 379 - 258222147 -AGA--TAAAGTGAATGATTCCAACTCATTAGATTTTAATA---TTTAATAACTCCCAATGTGTATTTGGTTTGTTTTAACAATATTCTAGCTTATATAACATGCTTAATAGGACAA------TATCAGTCACACCTATTAAGTTC---ACTACATTTAGAAGGCAT-----AATATTGC------TTATTGGAGGAATGTTTATGCTTTTAAA---------TACCTATTT-----TAACTTATTCACCTCAATA-----CCAGTCCTTTTATTAGT-TTTATAGCCTGCAAGG-----------CTTTCAACTATAATAATGGTATCTAGTACACATGTCCTGGACTATGTGCACCATGTAAACTTTCTCAAATATTATTAAACTAGTATCTGCAAGAAGACACTGTTAAAAT--TCATTCAAACAACTATATGGT +s canFam1.chrM 9855 379 + 16727 -AAGCCAAAAACAAATGATTTCGACTCATTAGATTATGATTT-ATCTCATAATTATC---ATGTCCATAGTATATATTAATATCTTTCTGGCATTCATTCTTTCTCTAATAGGTATACTTGTTTATCGATCACACCTAATATCATCGCTACTATGCTTAGAGGGCAT-----AATATTATCACTATTTGTAATAATATCTGTAACTATTCTCAA---------CAATCACCTCACATTAGC-----CAGCATGATA-----CCAATCGTACTACTAGTATTTGCTGCCTGCGAAGCAGCATTAGGACTATCTCTACTAGTTATAGTATCTAACACCTACGGGACTGATTACGTACAAAACCTAAACCTTTTACAATGCTA------------------------------AAAATTATCATCCCTACTATCATACTAA +s galGal2.chrM 11140 379 + 16775 -AAC--TAAGACAGCTGGTTTCGACCCAGCAAATTATAGACC-CACCTATAACTTTCTT-ATGTCTCCCCTACACTTCAGCTTCTATTCTGCATTCACATTCAGCAGCCTAGGACTAGCATTCCACCGAACACACCTCATCTCTGCCCTACTATGCCTAGAGAGCAT-----AATACTATCCATATTCATCCCCCTCTCAATCTGACCAGTAGA---------AAACCAAACCC---CATC--ATTCGCCCTTGTA-----CCTATCCTAATACTAGCCTTCTCAGCATGCGAAGCTGGCACAGGCCTAGCCATACTAGTAGCTTCTGCACGAACACATGGCTCTGACCACCTACACAACCTAAACCTTCTACAATGCTA------------------------------AAGATCATCCTACCAACAATCATACTCT +s danRer1.chrM 10951 381 + 16596 AAAG--AAAGACCCTTGATTTCGGCTCAAATAATTGCGGTGTAAACCCGTAACTCCCTT-ATGACACCCACGCACTTTAGTCTTAACGCAGCATTTATACTAGGCTTAGCAGGACTTACATTTCACCGTGTTCACCTCCTATCAGCATTATTATGTTTAGAAGGCAT-----AATATTATCTTTATTTATTTCCATAGCCCTTTGAACTTTAAA---------AACAGAGTCAAT--AAGTTTATCCA---CAGCC-----CCTATACTACTACTAGCCTTTTCTGCCTGTGAAGCAAGTGCCGGCCTAGCACTCCTAGTAGCCACAGCTCGAACCCACGGATCTGACCACATAAAAAACCTTAATCTACTACAATGCTA------------------------------AAAGTACTGATCCCCACTATTATGCTAT + +a score=36041.0 +s hg17.chrM 10794 154 + 16571 TACCACTGACATGACTTTCCAAAAAGCACATAATTTGAATCAACACAACCACCCACAGCCTAATTATTAGCATCATCCCCCTACTATTTTTTAACCAAATCAACAACAACCTATTTAG--CTGTTCCCCAACCTTTT------CCTCCGACCCCCTAACAAC +s panTro1.chr3 35472519 151 - 209662276 TACCAATGATATGATTCTCTAAAAATTATATAATCTGAATCAACGTGGTTATCCACAGCCTGCTCATCAGCTTTATCAGCCTACTATTTTTTAACCAATTGAACGATAACTCATCCAA--CTTCTCATTAATCTTT---------TCTGACCTGCTGACATC +s mm5.chrM 10200 154 + 16299 TACCACTAACCTGACTATCAAGCCCTAAAAAAACCTGAACAAACGTAACCTCATATAGTTTTCTAATTAGTTTAACCAGCCTAACACTTCTATGACAAACCGACGAAAATTATAAAAA--CTTTTCAAATATATTCT------CCTCAGACCCCCTATCCAC +s rn3.chr16 53342361 146 + 90224819 TTCCATTAACCTGACTGTTAAAA--------AAACTGAACTAATGTCACCTCTTATAGCTTCTTAGTAAGCTTTATTAGTCTATCACTATTATAGCAAAATGATGAAAATAACTTAAA--TTTCTTAATTATATTTT------CTTTAGCCCCCTTATCTAC +s canFam1.chrM 10234 154 + 16727 TCCCCCTTACATGAATATCAAAGCCTAACATAATCTGAATTAACACGACAACATATGGTTTGCTAATCAGCTTAATCAGCTTATTCTACCTAAACCAACCAAATGATAATACATTGAA--CTCCTCCTTAATATTTT------TCTCTGATTCCCTATCGGC +s galGal2.chrM 11519 154 + 16775 TGCCCACAGCCCTCTTATCCCCAGCAAAATCCATATGAACTAACACCACAATATACAGCCTTCTAATCGCCTCGATCAGCCTACACTGACTAACCCCATCATACTACCCCACAAAAA--------CCCTAACCCTCTGAACAGGCATAGACCAAATCTCAAC +s danRer1.chrM 11332 157 + 16596 TCCCTACAATCTGATTATCTTCATCAAAATGACTGTGAACAACTACAACAATAAACAGCTTTTTAATTGCCTTTATTAGCTTAACATGACTAAAATGAACCTCGGATACAGGGTGAAATGCTTCTAACTCGTACATA-----GCTGCAGACCCACTATCAAC + +a score=205901.0 +s hg17.chrM 10948 423 + 16571 CCCCCTCCTAATACTAACTACCTGACTCCTACCCCTCACAATCATGGCAAGCCAACGCCACTTATCCAGCGAACCACTATCACG--AAAAAAACTCTACCTCTCTATACTAATCTCCCTACAAATCTCCTTAATTATAACATTCACAGCCACAGAACTAATCATATTTTATATCTTCTTC-----GAAACCACACTTATCCCCACCTTGGCTATCATCACCCGATGAGGCAACCAGCCAGAACGCCTGAACGCAGGCACATACTTCCTATTCTACACCCTAGTAGGCTCCCTTCCCCTACTCATCGCACTAATTTACACTCACAACACCCTAGGCTCACTAAACATTCTACTACTCACTCTCACTGCCCAAGAACTATCAAACTCCTGAGCCAACAACTTAATATGACTAGCTTACACAATAGCTTTTAT +s panTro1.chr3 35472670 421 - 209662276 ACCCCTTCTAATCTTAACAGCCTGACTACTGCCTCTTATAATTCTAGCAAGCCAATACCACCTGTCCAATGAATCACCCCCGTG---AAAAAATTCTATATTTTGATATTGATTTCTCTACAGACTTTTTTAATCCTAGCATTCACTGCCACAG-ACTAATCATATTTTATATCCTCTTT-----GAAGCCACACTAGTTCCCACCCTAATTATCATCACCCACTGAGGCAACCAACCAGAACGCCTCAATGCAAGATCACACTTCTTATTTTACACACTAGTAGGATTCCTTCCTTTACTTGTAACATTTGTTTATACTCCAAATACCTCAGGTTCACTAAATATGCTAGTAATAATATTTACTATCCAAGAGCTATTAACCTCCTGATCCAATAATCTTATATCACTAGCATGTATCATGGCCTTCAT +s mm5.chrM 10354 423 + 16299 ACCATTAATTATTTTAACAGCCTGATTACTGCCACTAATATTAATAGCTAGCCAAAACCACCTAAAAAAAGA--TAATAACGTACTACAAAAACTCTACATCTCAATACTAATCAGCTTACAAATTCTCCTAATCATAACCTTTTCAGCAACTGAACTAATTATATTTTATATTTTATTT-----GAAGCAACCTTAATCCCAACACTTATTATTATTACCCGATGAGGGAACCAAACTGAACGCCTAAACGCAGGGATTTATTTCCTATTTTATACCCTAATCGGTTCTATTCCACTGCTAATTGCCCTCATCTTAATCCAAAACCATGTAGGAACCCTAAACCTCATAATTTTATCATTCACAACACACACCTTAGACGCTTCATGATCTAACAACTTACTATGGTTGGCATGCATAATAGCATTTCT +s rn3.chr2 24395464 406 - 258222147 CTCTCTTCTAATACTGAAGCCCTGATTACTTTCCTTAATAATCACAACAAGTCAGTGCC-CTTTTCCAAAGATTCAAATACACA--AAAATACTGATACGTGTCAGTATTAACTGTCC-----AGATTCATAATGATTGCATTTTCCTTCATATAGAAAATGCTATTTTATCTTTTTATTCAAAAAAAACCCTACCAATCTCAGCTTTA---ATTATTACCTAATGAGGTATTCAAACAGAATGATTAAAAGCAGG-----ATTTCCTATTCTATGTACTGAGTGG--CCATTATATCTCCTGTAGCAGTTAGTTATATCATGTATACTACTGGCTCACTACAC-TCTTAACGATGTTCAACTAAATTAAAATACTGTCATATTCCCAGTCAAACAG-----GATGAAGAATCCACATTAAGATGTCTCT +s canFam1.chrM 10388 423 + 16727 ACCACTATTAGCACTCACAACATGACTTCTGCCCCTTATACTTATAGCAAGTCAACACCATTTATCAAAAGAACCCTTAACTCG--AAAAAAACTATATATTTCAATACTAATTCTTCTCCAATTGTTCCTAATTATAACTTTCACAGCCTCTGAACTCATCTTCTTTTACATCCTATTT-----GAAGCAACACTGATTCCGACCCTGATCATTATTACCCGATGAGGAAATCAAACTGAACGACTAAACGCAGGACTCTACTTCTTATTTTATACTTTAATAGGATCCCTCCCACTCCTAGTAGCTCTCCTTTATATCCACAATTTCATGGGCTCCCTAAATTTTCTCATAATTCAATACTGAATCCAGCCTCTGCCAAACTCCTGATCTAATATTTTCCTATGACTGGCATGCATAATAGCATTCAT +s galGal2.chrM 11673 423 + 16775 TCCCCTCTTAGTACTCTCCTGCTGGTTTCTCCCCCTCATAATTATAGCTAGCCAAGGCCACCTACAACATGAACCCCACAAACG--AAAACGAATATTCATCTCCACCTTAATCATCATCCAACCATTCATCATCCTAGCCTTCTCAGCAACTGAACTCATACTATTCTACATCTCATTC-----GAAGCAACCCTAATCCCAACCCTCATCTTAATCACACGCTGAGGAAACCAACCAGAACGACTTAGCGCAGGCATTTACCTTCTATTCTATACCCTAATTAGCTCTCTTCCCCTACTAGTCTCCATCCTCTACCTTCACACAAATACTGGAACCCTCCACCTACCCATTATCAAACTCACCCACCCCAACCTACCTGCCTCCTGAACAAGCTTATTATCTAGCCTAGCTCTCCTAATAGCCTTTAT +s danRer1.chrM 11489 423 + 16596 ACCTCTTCTAGTACTAACCTGTTGACTTCTTCCATTAATGATTCTAGCTAGCCAAAATCACATCAACTCGGAGCCTGTAAACCG--ACAACGAATATACATTACACTTCTTGCCTCTTTACAAACTTTCATAATTATGGCGTTTGGCGCTACAAAAATCATTATATTCTACATTATATTC-----GAAGCTACACTTATCCCAACACTAATCATTATTACCCGATGAGGTAATCAAGCTGAGCGCCTTAACGCAGGTACTTACTTTCTTTTCTATACATTAGCAGGCTCTCTACCTCTTTTAGTAGCCCTCCTATTACTGCAACAATCAACAGGAACCCTATCAATACTAGTACTTCAGTACTCAGACCCACTTTTACTTAACTCTTGAGGACATAAAATCTGATGAGCCGGCTGCTTAATTGCATTCCT + +a score=87189.0 +s hg17.chrM 11371 111 + 16571 AGTAAAGATACCTCTTTACGGACTCCACTTATGACTCCCTAAAGCCCATGTCGAAGCCCCCATCGCTGGGTCAATAGTACTTGCCGCAGTACTCTTAAAACTAGGCGGCTA +s panTro1.chr3 35473091 111 - 209662276 AGTAAAAATACCTCTATATGGACTTCACCTATGACTCCCTAGAGCCCATGTAGAATCCCCTATTGCCAACTCAATAGTACTTGCAGCAGTACTCCTAAAGCTAGGTGGTTA +s mm5.chrM 10777 111 + 16299 TATTAAAATACCATTATATGGAGTTCACCTATGACTACCAAAAGCCCATGTTGAAGCTCCAATTGCTGGGTCAATAATTCTAGCAGCTATTCTTCTAAAATTAGGTAGTTA +s rn3.chr2 24395989 80 - 258222147 AAAAAAGATGTCTCT-TACTGCCTCTACC-----------AAACCACAAGTAG--------------GAATGAGTTGTCCTTGCAGTCACAGT-GTAAACCTGGATG---- +s canFam1.chrM 10811 111 + 16727 AGTAAAGATACCTCTATACGGCCTCCACTTGTGACTACCAAAAGCACACGTAGAGGCCCCTATTGCCGGCTCCATAGTACTTGCCGCTGTACTCCTAAAACTAGGGGGCTA +s galGal2.chrM 12096 111 + 16775 AGTCAAAGCACCCCTATACGGACTACACCTATGACTGCCTAAAGCCCATGTAGAAGCACCAATCGCAGGCTCCATACTACTCGCTGCTCTACTACTAAAACTAGGCGGATA +s danRer1.chrM 11912 111 + 16596 AGTAAAAATACCGCTATATGGGATACACCTTTGATTACCAAAAGCACATGTAGAAGCCCCTGTAGCAGGATCTATAATTCTAGCGGCAGTGCTACTAAAACTAGGAGGCTA + +a score=48447.0 +s hg17.chrM 11482 88 + 16571 TGGTATAATACGCCTCACACTCATTCTCAACCCCCTGACAAAACACATAGCCTACCCCTTCCTTGTACTATCCCTATGAGGCATAATT +s panTro1.chr11_random 29231538 88 - 53199993 CGGTATAATACGGCTTACCCTTATCCTCAGCCCCCTAACAGAATATATAGCCTACCCCTTCCTCATACTATCCCTATGAGGGATAGTT +s mm5.chrM 10888 88 + 16299 CGGAATAATTCGCATCTCCATTATTCTAGACCCACTAACAAAATATATAGCATACCCCTTCATCCTTCTCTCCCTATGAGGAATAATT +s rn3.chr2 24396069 71 - 258222147 TGATGTA---------------ATTTTAAATCTACTCACAGGACATACAATGTACTCAT--CGTCTATTGGCCCCATTAAGAATACTT +s canFam1.chrM 10922 88 + 16727 TGGCATGATACGAATTACAACCCTACTAAATCCCCTGACCAATTTCATAGCATACCCCTTCATAATATTGTCTCTATGAGGCATAATC +s galGal2.chrM 12207 88 + 16775 TGGCATCATACGAGTCACCCTCCTAATGGAGCCCGTATCCAACTTCTTACACTACCCCTTCCTCACCCTAGCCCTATGAGGTGCCCTA +s danRer1.chrM 12023 88 + 16596 CGGTATGATACGAATAATAGTAATATTAGATCCTTTATCTAAGCAACTAGCATACCCGTTTATTATCCTTGCTCTATGAGGAGTAATC + +a score=59688.0 +s hg17.chrM 11570 91 + 16571 ATAACAAGCTCCATCTGCCTACGACAAACAGACCTAAAATCGCTCATTGCATACTCTTCAATCAGCCA---------------CATAGCCCTCGTAGTAACAGCCA +s panTro1.chr11_random 29231626 89 - 53199993 ATGACAAGCTCCATTTGTCTACAACAAACCGATCTAAAA----TCATTGCCTACTCCTCTGTAAGCCATATACCACTTGTCATCATAGCTCTC------------- +s mm5.chrM 10976 91 + 16299 ATAACTAGCTCAATCTGCTTACGCCAAACAGATTTAAAATCACTAATCGCCTACTCCTCAGTTAGCCA---------------CATAGCACTTGTTATTGCATCAA +s canFam1.chrM 11010 91 + 16727 ATAACAAGCTCTATCTGTCTCCGTCAAACAGATCTAAAATCCCTAATTGCATACTCCTCAGTTAGTCA---------------TATGGCACTGGTTATCGTAGCGG +s galGal2.chrM 12295 91 + 16775 ATAACTAGCTCTATCTGCTTACGCCAAACAGACCTAAAATCCCTCATTGCCTACTCATCCGTAAGCCA---------------TATGGGCCTAGTCATCGCTGCAA +s danRer1.chrM 12111 91 + 16596 ATAACAGGATTAGTTTGTCTACGACAAACAGACTTAAAATCGCTAATTGCCTATTCATCAGTAGGCCA---------------TATGGGACTAGTTGCAGGAGGAA + +a score=195175.0 +s hg17.chrM 11661 417 + 16571 TTCTCATCCAAACCCCCTGAAGCTTCACCGGCGCAGTCATTCTCATAATCGCCCACGGACTCACATCCTCATTACTATTCTGCCTAGCAAACTCAAACTACGAACGCACTCACAGTC-------GCATCATAATCCTCTCTCAAGGACTTCAAACTCTACTCCCACTAATAGCTTTTTGATGACTTCTAGCAAGCCTCGCTAACCTCGCCTTACCCCCCACTATTAACCTACTGGGAGAACTCTCTGTGCTAGTAACCA------CGTTCTCCTGATCAAATATCACTCTCCTACTTACAGGACTCAACATACTAGTCACAGCCCTATACTCCCTCTACATATTTAC----CACAACACAATGGGGCTCACTCACCCACCACAT--TAACAACATAAAACCCTCATTCACAC---GAGAAAACACCCT----------CATGTTCATAC +s panTro1.chr11_random 29231715 419 - 53199993 --CTAATCCAAACCCCTTGAAGCTTTACAGGTGCCGTCAGCCTTATAATTACCCATGGAGTCACTTCATCCCTGTTATTCTGCCTAGCAAATTCCAACTACGAGTG-------AGTCCAAAACGGAATCATATTACTTACCTGAGGCCTTCAAATACTCCTCCCACTGATAGCCTCATGATGACTTCTAGCAAATCTCACTAATCTTGCCTTA-CCCCTACCATTAATCTAGTAAGGGAACTCTCTGTG------ATCATGGCTTCATTCTCCTGATCAAACATCGCTATTATGCTTACAGGACTTAATATACTAATTACAACCCTCTACTCC--CTACATA--TACCAATCACAACACAATGAGGGACACTTACATATTACAT--TAACA--GTTAAACCTTCCTTTACAC---AAGAAAATACATTAATATTTATACATGT---TAC +s mm5.chrM 11067 427 + 16299 TCATAATCCAAACTCCATGAAGCTTCATAGGAGCAACAATACTAATAATCGCACATGGCCTCACATCATCACTCCTATTCTGCCTAGCAAACTCCAACTACGAACGGATCCACAGCC-------GTACTATAATCATGGCCCGAGGACTTCAAATGGTCTTCCCACTTATAGCCACATGATGACTGATAGCAAGTCTAGCTAATCTAGCTCTACCCCCTTCAATCAATCTAATAGGAGAATTATTCATT------ACCATATCATTATTTTCTTGATCAAACTTTACCATTATTCTTATAGGAATTAACATTATTATTACAGGTATATACTCAATATACATAATTAT----TACCACCCAACGCGGCAAACTAACCAACCATAT--AATTAACCTCCAACCCTCACACACAC---GAGAACTAACACTAATAGCCCTTCACATAATTCC +s rn3.chr2 24396826 404 - 258222147 -TTCTACTTGAACACCACGGAGTCCCACAGGCTC-GCAGCCCTGATGAGTGCCCATGGTCTCAAGGTATAAACAGCTGTCTGCCTTACAGTCTCCAACTAAACCTGAATTCATATCC--------AACTACGTTGTTACCTTGCAGGTAACAACCATTACTGTCTTCGATAAC---GTGCTAAGTGTGGGCTAGC------AATCTAGCCTTTACTGTCAGATACCACCTTCTTAGGGAA-TATTTGTG------TTTACAACT-CGTTTTCATGATTTAGTTTTACCCTCATTATGGCAGGATTTACCAGACCAATTAAAACCGTCTACTAGCTCTGCAGAATCAT----CGCAAGGCAATGAGGAAAACTTATATTCCACAT--TAACA--GTACCAACCTCTTCTGCATTTGGAAAAATGACTCTTCTCTTCCCAC---------- +s canFam1.chrM 11101 417 + 16727 TTCTTATTCAAACACCATGAAGTTATATAGGTGCAACAGCTCTAATAATTGCCCATGGTTTAACATCCTCAATACTATTCTGCTTAGCCAACTCCAATTACGAACGAATCCATAGCC-------GTACTATAATTCTCGCACGAGGACTTCAAACTCTCCTTCCCCTAATAGCAGCCTGATGACTATTAGCAAGCCTCACAAATCTGGCTCTCCCTCCAACAATTAATCTTATCGGAGAACTATTTGTA------GTGATATCCTCATTCTCATGATCCAACATTACTATTATCCTAATAGGAATTAACATTATCATCACCGCCCTATACTCACTTTATATATTAAT----CACCACACAACGTGGTAAATATTCCCACCATAT--CAAAAATATCAAACCATCATTCACAC---GAGAAAATGCCCTAATGACCTTGC---------- +s galGal2.chrM 12386 417 + 16775 GTATAATCCAAACCCAATGATCATTCTCAGGTGCAATAATCCTCATAATCTCCCATGGACTAACCTCTTCCCTTTTATTCTGCCTAGCAAACACAAACTACGAACGGACACACAGCC-------GCATTCTTATCCTGACACGAGGCCTCCAACCCCTCCTACCATTGATATCAGTATGATGATTACTAGCCAACTTAACCAACATGGCCCTGCCCCCAACCACCAACCTGATAGCAGAACTAACAATT------ATAGTTGCCCTCTTCAACTGATCCTCCCCCACAATTATCTTAACCGGCACTGCAACACTCCTAACCGCCTCTTACACCCTCTACATACTACT----CTCAACCCAACGAGGCACTCTTCCATCCCACATCACAACAACCCCCAAC--TCAAACACTC---GAGAACATCTTCTCATAACCCTCC---------- +s danRer1.chrM 12202 417 + 16596 TTTTGATTCAAACCCCCTGAGGATTTACAGGAGCAATTATTTTAATAATCGCCCACGGACTAACCTCATCCGCCCTATTTTGCTTAGCTAACACATCGTATGAACGAACTCATAGCC-------GGACCATAATCCTCGCTCGAGGACTCCAGATAGTGCTACCGCTAGCAACAGTATGGTGATTTATTGCTAATCTGGCCAACCTAGCACTTCCACCTCTACCAAACTTGATAGGAGAACTTATGATT------ATCACAGCCCTATTTAACTGATCTCCATGAACAATTATTATTACAGGAATAGGAACCTTAATTACAGCAAATTATTCACTTTATATATTTTT----AACATCTCAACGAGGCTCAATCCCAGAACACAT--CACCAATCTTTCACCATCCCACACCC---GAGAACATCTCTTAATGACTTTAC---------- + +a score=1681.0 +s hg17.chrM 12078 63 + 16571 ACCTATCCCCCATTCTCCT-CCTATCCCTCAACCCCGACATCATTACCGGGTTTTCCTCTTGTA------- +s panTro1.chr11_random 29232134 55 - 53199993 ACCT-------ATTCTTCT-ATTAT-CCTAAATCCTAAAATTATTATGGACTTTACATGCTGTA------- +s mm5.chrM 11494 53 + 16299 ACTT-------ATTCTTCTAACTAC----CAGTCCAAAACTAATTACAGGCCTGACAATATGTG------- +s canFam1.chrM 11518 63 + 16727 ACCTACTGCCCCTACTCCT-CCTATCCCTTAACCCTAAAATTATTCTCGGTCCCATCTACTGTA------- +s galGal2.chrM 12803 63 + 16775 ACATCATCCCCATACTAAC-ACTCATCCTCAAACCAGAACTAATCTCAGGAACCCCTCTATGCA------- +s danRer1.chrM 12619 64 + 16596 ACCTAATTCCTATCATCTT-ACTTATATTAAAACCAGAACTTATGTGAGGT------TGATGTAACTAGTA + +a score=871.0 +s hg17.chrM 12141 2 + 16571 AA +s panTro1.chr11_random 29232189 2 - 53199993 GC +s mm5.chrM 11547 2 + 16299 AA +s rn3.chr2 24397331 2 - 258222147 AA +s canFam1.chrM 11581 2 + 16727 AG +s galGal2.chrM 12866 2 + 16775 AA +s danRer1.chrM 12683 2 + 16596 AG + +a score=150956.0 +s hg17.chrM 12143 196 + 16571 TATAGTTTAAC-CAAAACATCAGATTGTGAATCTGACAACAGAGGCTTACGACCCCTTATTTACCGAGA--------AAGCT-CACAAGAA---------CTGCTAACTCATG--CC-CCCATGTCTAACAA-CATGGCTTTCTCA--ACTTTTAAAGGATAACAGCT-ATCCATTGGTCTTAGGCCCCAAAAAT-TTTGGTGCAACTCCAAATAAAAGTAAT +s panTro1.chr3 35473859 196 - 209662276 TATAGTTTAAC-CAAAACATTAGATCGTGGATCTAACAATAGAAGCCTGCAACTTCTTACCTACCAAGA--------AAGTA-TGCAAGAA---------CTGCTAACTCATG--CC-CCCATGTTTAACAA-AATGGCTTTCTCA--ACTTTTAAAGGATTGGAGTT-ATCCATCGGTCTTAGGAACTAAAAAC-ATTGATGTAACTCCAAATAAAAGTAAC +s mm5.chrM 11549 194 + 16299 TATAGTTTACA-AAAAACATTAGACTGTGAATCTGACAACAGGAAA-TAAACCTCCTTATTCACCAAGA--------AAGAT-TGCAAGAA---------CTGCTAATTCATG--CT-TCCATGTTTAAAAA-CATGGCTTTCTT---ACTTTTATAGGATAATAGTA-ATCCATTGGTCTTAGGAACCAAAAAC-CTTGGTGCAAATCCAAATAAAAGTAAT +s rn3.chr2 24397333 182 - 258222147 TATATTTTATG-TTAACCATTACATTGTT--TCTAATAACAGAAAATTACAG---CTTGTTCCCTGAGA--------CA-TG-TGAAAGAC---------ATACTGATTCACAGCCC-CCCATGTGTGACAA---------TCTTA--AGTTTGAACAGGTAAAAGTA-ATTTACTACTTTGAAGGGC--AAAAC-TTTGGTCTGACTCCAAATAGAAGTAAT +s canFam1.chrM 11583 196 + 16727 CATAGTTTAAC-AAAAACATTAGATTGTGAGTCTAACAATAAAAGCTCAAACCTTTTTGCTTACCGAAA--------AAGTACTGCAAGAA---------CTGCTAATTCATG--CT-CCCATGCATAAGAA-CATGGCTTTTTCA--ACTTTTATAGGATAGAAGTA-ATCCGTTGGTCTTAGGAACCAAAAA--ATTGGTGCAACTCCAGATAAAAGTAAT +s galGal2.chrM 12868 204 + 16775 CATAGTTTAAC-CCAAACATTAGATTGTGATTCTAAAAATAGGAGTTTAACCCTCCTTGTTCGCCGAGGGGAGGCCCAAGCC-AGCAAGAA---------CTGCTAATTCCTG--CA-TCTGAGCTTTAAAC-CTCAGTCCCCTTA--ACTTTTAAAGGATAAGAGCA-ATCCGTTGGTCTTAGGAACCACCTAT-CTTGGTGCAAATCCAAGTAAAAGTAAT +s danRer1.chrM 12685 210 + 16596 TTTAGTTTAAAGTAAAATTTTAGATCGTGACTCTAAAGATAGGGGTTAAAGCCCCCTCACTCACCGAGG--------AAGAG-TAGGAAAACAGTAAATGCTGCTAATATTTA--CCAACCATGGTTAAACTCCATGGCTTCCTTACCGCTTCTAAAGGATAATAGTACATCCATTGGTCTTAGGAACCAAAAACTCTTGGTGCAACTCCAAGTAGAAGTT-- + +a score=-27322.0 +s hg17.chrM 12339 84 + 16571 AACCATGCA-------CACTAC------------TATAACCACCCTAACCCTGACTTCCCTAATTCC--------CCCCAT--CCTTAC----------CACCCTCGTTAACCCTAACAAAAA------ +s panTro1.chr3 35474055 84 - 209662276 AAACATG------------TATCTTCCATG--GGTATAACAGCCCTAATCC------CCTTAATTCC-------------------TACTGATTACTATTATCTTAGCCAACTCCTGCAAAAT------ +s mm5.chrM 11743 83 + 16299 CAA----------------TAT------------TTTCACAACCTCAATCTTATTAATCTTCATTCTTCTACTATCCCCAA--TCCTAA----------TTTCAATATCAAACCTAATTAAAC------ +s canFam1.chrM 11779 84 + 16727 AAATATA------------TTTTCTTCATG-CATAATCACAGCCCTAGTTA------TTCTTACTTT--------GCCCAT--CATTAT----------ATCCTCTACTAAACTTTACAAGAA------ +s galGal2.chrM 13072 92 + 16775 --------GGAGACTCCACTGC--TCCTTAACACCCTCACAACATTAACACTACTCACCCTCCTTAC--------CCCTATTATCCTTC----------CCCCCCTCCTAAATCTAAAAA--------- +s danRer1.chrM 12895 86 + 16596 ----------------TATGAC------TGATATGATCATACCTTTAACATTAA---TCCTAATTTT--------CGCAGTTTTATCAT----------ACCCCTTATTAAAACCAAAAAGCTATTCAA + +a score=142193.0 +s hg17.chrM 12423 342 + 16571 AAACTCATACCCCCATTATGTAAA---------ATCCATTGTCGCATCCACCTTTATTATCAGTCTCTTCCCCACAACAATATTCATGTGCCTAGACCAAGAAGTTATTATCTCGAACTGACACTGAGCCACAACCCAAAC-----AACCCAGCTCTCCCTAAGCTTCAAACTAGACTACTTCTCCATAATATTCATCCCTGTAGCATTGTTCGTTACATGGTCCATCATAGAATTCTCACTGTGATATATAAACTCAGACCCAAACATTAATCAGTTCTTCAAATATCTACTCATTTTCCTAATTACCATACTAATCTTAGTTACCGCTAACAACCTATTCCAACTGTTCATCGG +s panTro1.chr3 35474139 338 - 209662276 AGGCTCATACCCAAATTATGTAAAA------ACATC---TATCACATATGCCTTCATCATTAGCCTCATCCCAACAACAATGTTTATATGCACAGACCAAGAAGCCATTATCTCAAACTGACATTGAATGATGATCCAGACTCTCAAA-----CTCTCACTAAGCTTCAAACTAGACTACTTCTCCACAAAATTTATCCCAGTAGCGCTATTCATTACCTGAACTATTGTAGAATTATCAATATGATATATAAATTCAGACTCTAACATTAATCAATTTTTCAAG----TACTTATTTTCTTCATCATGATATTAATTCTGGTTACTGCCAACAACCTCTTTCAGCTCTTTATCGG +s mm5.chrM 11826 343 + 16299 ACA-TCAACTTCCCACTGTACACCACC----ACATC---AATCAAATTCTCCTTCATTATTAGCCTCTTACCCCTATTAATATTTTTCCACAATAATATAGAATATATAATTACAACCTGGCACTGAGTCACCATAAATTC-----AATAGAACTTAAAATAAGCTTCAAAACTGACTTTTTCTCTATCCTGTTTACATCTGTAGCCCTTTTTGTCACATGATCAATTATACAATTCTCTTCATGATATATACACTCAGACCCAAACATCAATCGATTCATTAAATATCTTACACTATTCCTGATTACCATGCTTATCCTCACCTCAGCCAACAACATATTTCAACTTTTCATTGG +s rn3.chr2 123593513 320 + 258222147 AAA-TCAGTTTCCC-TTCTGTATAAAT----TCATT---TATCAAATATGCTTTCCTTCTTAGCCTATTACCTCTAATATCATTCTACTATTCTGACACA-----CCTGATTACTAACTGATACTGAATTACTATTAATTATTCCAAA---------CTATCAGTTTAACATTTGACTATTTCTGCATATTCTTTTTACTCGTGACTTTATTCATAACCTAATCAGTCATAAAGTTTTCTTCATGATCTATACACCCCAACCTCTCCTAAACTATTTTTATCAAATACCTCCTT-TATTTTTAATTTCATTAATTATCTTTGCTTCAACCAACAAC------------TTTATTGG +s canFam1.chrM 11864 341 + 16727 AAG-CTATACCCATACTATGTAAAA------ACCGC---TACTTCTTACGCGTTCATAATTAGCATAATTCCCACAATAATATTCATCTACTCAGGACAGGAAACAATCATTTCAAACTGGCATTGAATAACAATCCAAACTATAAAA-----CTATCCATGAGTTTCAAATTAGACTACTTCTCAATAATCTTTGTACCTGTAGCCCTTTTTGTCACGTGGTCTATCATAGAATTCTCTATATGATATATACACTCCGATCCTTACATTAACCGGTTTTTCAAGTACCTTCTCTTATTCCTCATCACTATAATAGTCCTAGTTACCGCAAACAACATATTCCAACTATTCATTGG +s galGal2.chrM 13164 337 + 16775 -------ACTCCCCCATATCCATCACC----AAAAC---CATTAAAACCGCCTTCCTAATCAGCCTAATCCCAACAACAATCTTCATCCACTCAGGGGCAGAAAGCATTGCCACCCACTGAGAATGACAATTTATCCCCAACTTCAAG-----ATCCCCATCTCCCTAAAAATAGACATATACTCCATAATATTCTTCCCCATTGCACTATTTGTAACCTGATCCATCTTAGAGTTCGCAACATGATACATAGCATCCGAACCATTTATTACAAAATTCTTTACCTACCTACTCACCTTCCTCATCGCCATATTAACACTAACCATCGCAAATAACATATTCCTCCTATTTGTAGG +s danRer1.chrM 12981 343 + 16596 -----AATCCAACAACTCTTTCCAAGCTTGAAATGC---TGTCCATGTATCTTTCTTAATTAGTCTTATCCCACTTACAATGATGCTGTACAAAGAATCAGACCATGTTGTAATATGCTGAAGCTGAATAAATACACAAGCGTTTAAC-----GTAGACCTAAGTTTTAAATTTGACTACTATTCTGTGACTTTTACCTCAATCGCCTTATTCATCACCTGGTCAATTTTAGAATTTGCATCATGATATATAGCCTCTTATCCACAAAAAGAATTATTTTACAAATATTTACTTCTTTTTCTTATATCAATAATTATCTTAGTTACAGCCAACAATCTATTTCAACTATTTATTGG + +a score=543567.0 +s hg17.chrM 12765 648 + 16571 CTGAGAGGGCGTAGGAATTATATC-CTTCTTGCTCATCAGTTGATGATACGCCCGAGCAGATGCCAACACAGCAGCCATTCAAGCAGTCCTATACAACCGTATCGGCGATATCGGTTTCATCCTCGCCTTAGCATGATTTATCCTACACTCCAACTCATGAGACCCA----CAACAAATAGCCCTTCTAAA------CGCTAATCCAAGCCTCACCCCACTACTAGGCCTCCTCCTAGCAGCAGCAGGCAAATCAGCCCAATTAGGTCTCCACCCCTGACTCCCCTCAGCCATAGAAGGCCCCACCCCAGTCTCAGCCCTACTC-CACTCAAGCACTATAGTTGTAGCAGGAATCTTCTTACTCATCCGCTTCCACCCCCTAGCAGAAAATAGCCCACT-AATCCAAACTCTAACACTA-TGCTTAGGCGCTATCACCACTCTGTTCGCAGCAGTCTGCGCCCTTACACAAAATGACATCAAAAAAATCGT-AGCCTTCTCCACTTCAAGTCAACTAGGACTCATAATAGTTACAATCGGCATCAACCAACCACACCTAGCATTCCTGCACATCTGTACCCAC--GCCTTCTTCAAAGCCATACTATTT-ATGTGCTCCGGGTCCATCATCCACAACCTTAACAATGAACAAGATATTCGAAAAAT +s panTro1.chr11_random 29232784 648 - 53199993 ATGAGAAGGTATAGGAATCATGTC-TTTCTTACTAACTGGCTGACAATATGGCCGAGCAGATGCTAATACAGCAGCCCTCCAAGCAGTCCTGCACAATCGCATCGGCGATATTGGTTTTATTTTAGTTATAGCATGGTTCCTCTTTTCCTCCAACACATGAG----AGATTCAACAAGCATTCATTCTAAACCCTACCTCTAATCC---CCT---TCCATTAATTCGCCTTCTCTTAGCAGCAGCAGGAAAGTCAGCTAAATTCGGCCTCCATCCCTGACTTCCATCCGCCATAAAAGGCCCAACCCCAGCCTCAGCCCTGCTC-CACTCCAGCACTGTAGTTGTAGCAGGAGTTTCCCTGCTCATCCGCTTCTACCCTTTAATAGAAAATAACCT-CTGAACCCAAACCTTTACATTA-TCTCCAGGGGCTATTACCATCTTATTTACAGCAATCTGCGCTCTAACACAAAGTGATATTTAAAAAATCAT-AGCATTCTCCACCTCAAGTCAGCTGGGCCTTACGACAGTCACAATTGGCATGAATCAGCCACACCTAGCATTCCTTCACATCTGCAGCCAC--GCCTTTTTTAAAGCTATATTATTT-ATATGCTCAGGCTCCATCATCCACAATCTCAATGATGAACAAGATATTTGAAAAAT +s mm5.chrM 12169 648 + 16299 CTGAGAAGGGGTGGGAATTATATC-TTTCCTACTAATTGGATGATGGTACGGACGAACAGACGCAAATACTGCAGCCCTACAAGCAATCCTCTATAACCGCATCGGAGACATCGGATTCATTTTAGCTATAGTTTGATTTTCCCTAAACATAAACTCATGAG----AACTTCAACAGATTATATTCTCCAACAACAACGACAATCT---AAT---TCCACTTATAGGCCTATTAATCGCAGCTACAGGAAAATCAGCACAATTTGGCCTCCACCCATGACTACCATCAGCAATAGAAGGCCCTACACCAGTTTCAGCACTACTA-CACTCAAGTACAATAGTAGTTGCAGGAATTTTCCTACTGGTCCGATTCCACCCCCTCACGACTAATAATAA-CTTTATTTTAACAACTATACTT-TGCCTCGGAGCCCTAACCACATTATTTACAGCTATTTGTGCTCTCACCCAAAACGACATCAAAAAAATCAT-TGCCTTCTCTACATCAAGCCAACTAGGCCTGATAATAGTGACGCTAGGAATAAACCAACCACACCTAGCATTCCTACACATCTGTACCCAC--GCATTCTTCAAAGCTATACTCTTT-ATATGCTCTGGCTCAATCATTCATAGCCTGGCAGACGAACAAGACATCCGAAAAAT +s rn3.chr2 123593833 599 + 258222147 CTGAGAAGACATAGGTATTATATCACTTTCTACCA---------------------------GCAAACAGTGCAGCCCTGCAAGCAGTGTTGTGTAATCACAATGGAGTCATTAGATTAGTTTTAGCTACAGCATGAATCTTTGTAAACATCAACTCCTGAG----AACTTCAACAGATTTTTTTTCTTA-------CATCAACTT---AAC---TCCTCTCCTAGGCCTTCTAATTCCAGCCCCAGGAAAATCAGCACAATTTACTATCCGCTCCTGACTCCCATCAACCACAG-AGGCCCTTCCCCA-TCTCAGCATTCCTCTCATTCAAGTCCTGTAGTTGTTTCAGGAATCTTCTTAGTAATCAGACTTTACTCACTTG----AAATAACTA-CT--------ATTGTGATACTTGTGTCTTGAGTCACTACCCACATTGTTCACAGCCATCTGTGCAATTAC-TAAAATGACATTTAATTTTTTTTAAACATTTCGCACATTTAGCCAGTTAGGCCTTACAATAGTAGCTTTAGGTGTAAGTCAACCCTCTCTAGCTTTCCTTCACATCTGTACACACATACATTCTTCACAGCTATTCAGTTTCATGTGCCCAGG-------GTTCACAGCTTTAATGCTGAACAAGACATCTGGAAAAT +s canFam1.chrM 12205 648 + 16727 TTGAGAAGGAGTTGGCATTATATC-ATTCCTACTTATTGGATGATGGTACGGCCGAACCGATGCAAATACAGCCGCCCTACAAGCCGTCCTCTACAACCGTATTGGAGATGTAGGCTTCATTATAACCATAGCATGATTTCTACTAAACTTAAACACATGAG----ACCTTCAACAAATCTTCATTACGA---CAAACGATAATTTTAATCT---GCCACTACTTGGCCTACTACTAGCAGCTACCGGTAAATCTGCTCAATTCGGCCTACATCCCTGACTCCCCTCAGCCATAGAAGGCCCCACTCCTGTATCAGCCCTACTT-CACTCAAGCACAATAGTTGTAGCAGGAGTATTTCTTCTTATCCGCTTTCATCCACTAATAGAGCATAACCA-AACTATTCAAACCCTCACTTTA-TGCTTAGGGGCCATTACTACACTATTTACCGCAATCTGCGCTCTTACACAGAATGATATCAAAAAAATTGT-AGCGTTCTCTACCTCAAGCCAACTAGGCCTAATAATAGTAACAATTGGCATTAACCAGCCCTACTTAGCCTTCTTACACATCTGCACTCAC--GCATTTTTTAAAGCTATACTATTC-ATATGCTCAGGGTCAGTTATCCACAGCCTAAACGATGAACAAGACATTCGAAAAAT +s galGal2.chrM 13501 645 + 16775 ATGAGAAGGAGTAGGAATCATGTC-ATTCCTTCTCATTGGATGATGACAAGGACGAGCTGAAGCCAACACAGCTGCACTACAGGCAATAATCTACAACCGAATCGGAGACATTGGCCTCATCCTAAGCATAGCATGACTAGCCTCTTCCCTAAACACCTGAG----AAATTCAACAAATCACCCACCCAAACCAAA-CACCCACCC-----T---CCCCCTCCTTGGCCTAATCCTAGCCGCCACAGGAAAATCCGCTCAATTTGGCCTTCACCCATGACTTCCAGCAGCAATAGAAGGCCCAACCCCTGTCTCCGCCCTACTC-CATTCCAGCACAATAGTAGTTGCTGGAATTTTTTTACTCATCCGCACCCACCCCTTCCTGTCATCCAATAA-AACAGCCCTGACAACGTGCCTA-TGCTTAGGTGCTCTATCAACACTCTTTGCCGCAACATGCGCTCTCACTCAAAACGACATCAAAAAAATCAT-TGCCTTCTCCACTTCAAGCCAACTAGGCCTCATAATAGTCACAATTGGCCTAGACCTCCCCCAACTAGCCTTCCTCCACATCTCAACCCAT--GCCTTCTTTAAAGCTATATTATTC-CTATGCTCCGGCCTAATTATCCACAGCCTCAATGGAGAACAAGACATCCGCAAAAT +s danRer1.chrM 13324 651 + 16596 CTGAGAAGGGGTAGGAATCATATC-ATTTTTACTCATTGGCTGATGATTTGGGCGGACAGAGGCTAACACAGCATCTCTACAGGCCGTAATCTACAACCGAATAGGAGACATTGGATTTATCTTAACCTTAGCATGAATAGCAATATACCTCAACTCCTGAG----ACATTCAGCAAATTTTCATTCTTTCAAAAGACTTCGACATGACCAT---TCCCCAAATTGGACTTATTATTGCAGCCACAGGGAAATCAGCCCAATTTACACTTCACCCCTGACTACCATCAGCCATAGAAGGCCCTACACCAGTATCTGCTTTACTT-CACTCTAGCACTATGGTTGTAGCAGGGATTTTCCTTTTAATCCGTCTTCACCCAATTATAGAAACTAACAA-GCTTGCACCAACAATCTGTCTA-TGCCTTGGAGCATTAACAACTCTATTTGCAGCAACCTGTGCTCTAACCCAAAATGATATCAAAAAAATCGT-AGCTTTCTCAACATCAAGCCAACTAGGGCTAATGATAGTAGCAATTGGCCTAAACCAACCACATCTAGCATTTTTCCACATCTGCACTCAC--GCTTTTTTTAAAGCCATATTATTC-TTATGCTCAGGGGCAATTATTCACAGTCTTAACAACGAACAAGACATCCGTAAAAT + +a score=1898.0 +s hg17.chrM 13413 2 + 16571 AG +s mm5.chrM 12817 2 + 16299 AG +s rn3.chr2 123594432 2 + 258222147 GG +s canFam1.chrM 12853 2 + 16727 GG +s galGal2.chrM 14146 2 + 16775 AG +s danRer1.chrM 13975 2 + 16596 AG + +a score=97800.0 +s hg17.chrM 13415 148 + 16571 GAGGACTACTCAAAACCATACCTCTCACTTCAACCTCCCTCACC-------ATTGGCAGCCTAGCATTAGCAGGAATACCTTTCCTCACAGGTTTCTACTCCAAAGACCACATCATCGAAACCGCAAAC--ATATCATACACAAACGCCTGAGCCCT +s panTro1.chr3 35475123 148 - 209662276 GAGGGCTATTCAAGACTTTGCCCCTCACTTC-------CTCATCCTTTATTACTGGCAGTCTTGCACTTACAGGCATGCCTTTCCTTACAAGCTTTTACTCTAAGG-CCTCATCATTGAAACTGCAAACTCAT-TCATACACCAACGCCTGAGCCCT +s mm5.chrM 12819 148 + 16299 GAAACATCACAAAAATCATACCATTCACATC-------ATCATGCCTAGTAATCGGAAGCCTCGCCCTCACAGGAATACCATTCCTAACAGGGTTCTACTCAAAAGACCTAATTATTGAAGCAATTAAT--ACCTGCAACACCAACGCCTGAGCCCT +s rn3.chr2 123594434 146 + 258222147 GTGACTTAATAAAAGCCCTTCCTTTTACATC-------ATCTTGTCTAATTATCAGTGGACTTGCTTTAACTGGCATACC-TTCCTTACAGGATTTTACCCCAAAACCCTAGTCATTGAGGCCAGTAAC--ATCTAATA-ACCAATTCCTGAGCCTT +s canFam1.chrM 12855 148 + 16727 GTGGCCTATTTAAAGTCCTTCCCTTCACCAC-------AACCTCCCTTATTATCGGAAGCCTCGCATTAACAGGCATGCCTTTCCTTACAGGATTCTACTCCAAAGACCTGATCATCGAGTCCGCTAAC--ACGTCGAATACCAACGCCTGAGCCCT +s galGal2.chrM 14148 148 + 16775 GATGTCTACAAAAAACCCTCCCAATAACCAC-------CTCCTGCCTAACCATTGGCAACCTCGCTCTAATAGGAACTCCATTCCTAGCAGGCTTCTACTCAAAAGACCTGATCATCGAAAACCTAAAC--ACCTCATACATCAATACCTGAGCCCT +s danRer1.chrM 13977 148 + 16596 GGGGAACTTACCACACCCTACCAATAACCAC-------AAACTATTTGACCATCGGGAAAATAGCCCTTATGGGTACCCCCTTCCTTGCAGGATTTTTCTCAAAAGACGCTATCCTAGAAGCAATAACC--ACCTCCCATCTTAACGCCTGAGCCCT + +a score=20235.0 +s hg17.chrM 13563 55 + 16571 ATCTATTACTCTCATCGCTACCTCCCTGACAAGC----------GCCTATAGCACTCGAATAATT +s panTro1.chr3 35475271 55 - 209662276 TTCTGTTACTCTTATTGCCACTTCCTTGACA-GCTGTCCATGATACCTATA---------TTATT +s mm5.chrM 12967 55 + 16299 ACTAATTACACTAATCGCCACTTCTATAACA-GC---------TATGTACAGCATACGAATCATT +s canFam1.chrM 13003 55 + 16727 CTTAATTACACTCGTTGCCACATCCCTAACC-GC---------TGCCTACAGCACCCGAATTATA +s galGal2.chrM 14296 55 + 16775 CTCACTTACACTACTTGCCACATCTTTCACT-GC---------AACCTACAGCCTCCGCATAACC +s danRer1.chrM 14125 55 + 16596 AACACTAACATTAATCGCCACATCATTTACC-GC---------AGTTTATAGCTTCCGAATAATT + +a score=63924.0 +s hg17.chrM 13618 214 + 16571 CTTCTCACCCTAACAGGTCAACCTCGCTTCCCCACCCT---TACTAACATTAACGAAAATAACCC-CACCCTACTAAACCCCATTAAACGCCTGGCAGCCGGAAGCCTATTCGCAGGATTTCTCATTACTAACAACATTTCCCCCGC----ATCCCCCTTCCAAA--CAACAATCCCCCTCTAC-CTAAAACTCACAGCCCTCGCTGTCACTTTCCTAGGACTTC +s panTro1.chr3 35475326 213 - 209662276 TTCTTCGCTCTTATAGGACAACCTTGCTTCACGACTCTGGCTGCTA---TTAATGAAAATAACCC-CTTTCTAATTAACTCAATTAAGCGCCTAACAGTTGGCAGCATATTCACTGGATTCCTCATCACCAACCGTATTATTCCTGCT-TCATCCCC-----AAAAACAACCATACCACTCCAC-CTGAAGCTCACAGCCCTAGGTGTCACCATCTTAGG-CTTC +s mm5.chrM 13022 214 + 16299 TACTTCGTAACAATAACAAAACCGCGTTTTCCCCCCCTAATCTCCA---TTAACGAAAATGACCC-AGACCTCATAAACCCAATCAAACGCCTAGCATTCGGAAGCATCTTTGCAGGATTTGTCATCTCATATAATATTCCACCAACCAGCATTCCAGTCC------TCACAATACCATGATTT-TTAAAAACCACAGCCCTAATTATTTCAGTATTAGGATTCC +s canFam1.chrM 13058 213 + 16727 TTCTTTGCTCTACTAGGCCAGCCCCGCTTCTCCCCTATAATCCTTA---TCAACGAGAATAATCC-TCTCCTAATTAACTCTATTAAACGACTCCTTATCGGAAGTGTATTTGCAGGGTATATTATCTCCCACAGCATCACACCCACTACCATCCCA----CAGA--TAACTATGCCTCATTAT-CTAAAAATGACAGCCCTTGCAGTAACCACCTTGGG-TTTC +s galGal2.chrM 14351 214 + 16775 TTACTAGTCCAAACAGGACACACACGAACCCCCAGCAATCACCCCA---TTAACGAAAACACCCC-CCCAGCCATTCTCCCAATCATACGACTAGCCCTTGGCAGCATTATAGCAGGCCTATTAATCTCATCCCTAATCCTCCCCCCTAAAACCCCT----CCAA--TAACTATACCCACCATC-ACAAAAACTGCTGCCATCATTGTTACAACCCTAGGAATTA +s fr1.chrUn 320903859 214 + 349519338 --CTTCGTATCCATAGGCCACCCTCGCTTTAATTCCCTTTCACCAA---TCAATGAAAATAACCCATGCTGTAATTAAACCTATCAAACGACTGGCATGAGGCAGCATTATTGCTGGCCTATTAATCACCACACAACTTCTCCCAACAAAAACACCC----GTAA--TATCAATACCTATAGTTGTTAACACTTACTGCTCTTATCGTCACAATCTTAGGACTCC +s danRer1.chrM 14180 211 + 16596 TACTTAGTCTGTTTAGGAAGCCCCCGACACAAGACCTACGAGACAA---TTGATGAAAA---CCA-CATTCCAACCAATACTATTCAACGGCTTGCCTGAGGAAGCATTATTGCAGGATTAATCATCTCATACACTATAATTCCTCTTAAAACACCC----ATTT--TAACCATGCCTATTTAT-CTAAAATTGGCAGCCATTCTAGTAACTCTACTAGGTATTA + +a score=7350.0 +s hg17.chrM 13832 25 + 16571 TAACAGCCCTAGACCTCAAC--TACCT +s mm5.chrM 13236 25 + 16299 TAATCGCACTAGAACTAAAC--AACCT +s canFam1.chrM 13272 27 + 16727 TCCTGGCACTAGAACTAAACCTTACCT +s galGal2.chrM 14565 25 + 16775 TCCTAGCCCTAGAACTCTCA--AGCCT +s fr1.chrUn 320904073 25 + 349519338 TAATTGCCCTAGAATTAGCT--TCCTT +s danRer1.chrM 14391 25 + 16596 TCTTAGGACTAGAAATTAGT--ACGCT + +a score=-9799.0 +s hg17.chrM 13857 292 + 16571 AACCAACAAACTTAAAATAAAATCCCCACT---ATGCACATTTTATTTCTCCAAC-ATACTCGGATTCTACCCTAGCATC-ACA---CACCGCACAATCCCCTATCTAGGCCTTCTTACGAGCCAAAACCTGCCCCTACTCCTCCTAGACCTAACCTGACTAGAAAAG-CTATTACCTAAAACAATTTCACAGCACCAAATCTC---CACCT---------------CC---ATCATCACCTCAACCCA---AAAAGGCATAATTAAACTTTACTTCCTCTCTTTCTTCTTCCCACTCATCCT-----------------AACCCTACTCCTAATC-------------ACATAA +s panTro1.chr3 35475565 287 - 209662276 AACTAATAACCTTAAACCAAAATACCCATT---ACAGACATTCAACTTCTCCAAC-ATACTAGGATTTTATTC----ATCCACAATTCACCATACAACCCTCCACTCAGGCCTATACACAAGCCAAAATCTGGCTTCACTTCTACTAGACCTAATATGACTAGAAAAGTCTAT-ACCAAAGACCATTACACAAC-CCAAATTTC---AGCCT---------------CC---ATTACCATATCTACTCA---GAACGGCCTAATTAAACTCTACTT----TCTTTTTTTATCCCATCCCTTCT-----------------AACTCTGCTCCTAATT-------------ATCTAA +s mm5.chrM 13261 286 + 16299 AACCATAAAACTATCAATAAATAAAGCAA----ATCCATATTCATCCTTCTCAACTTTACTGGGGTTTTTCCC----ATCTATTATTCACCGCATTACACCCATAAAATCTCTCAACCTAAGCCTAAAAACATCCCTAACTCTCCTAGACTTGATCTGGTTAGAAAAAACCAT-CCCAAAATCCACCTCAACTCTTCACACAAA---CATAA---------------CC---ACTTTAACAACCAACCA---AAAAGGCTTAATTAAATTGTACTTTATATCATTCCTAATTAACATCATCTT-----------------AATTATTATCTTA-------------------TAC +s canFam1.chrM 13299 282 + 16727 --CACAAGGACTCAAATTTAACTATCCTTC---TAATTACTTTAAATTCTCCAGC-CTCCTTGGCTACTATCC----AACCATTATGCACCGCCTCACACCTAAAACAAGTTTAACCATTAGCCAGAAATCAGCATCTATACTTCTGGACTCCATCTGACTAGAAAACATCCT-ACCCAAATCAATCTCATATTTCCAAATAAA---ATCTT---------------CT---ACCCTTATTTCAAATCA---AAAAGGTCTCATCAAACTCTATTTCCTATCGTTCATACTAACTATAATCCT-----------------CAGTCTACTAA---------------------TCC +s galGal2.chrM 14598 290 + 16775 CCCTCACTCCCCCAAAACACAATCCCCTC-----------ATAAACTTCTCCTCC-TCCCTAGGCTACTTTAA----CCCCCTAACTCACCGAATTAGCCCCTCAATCCTCCTACATACCGGACAAAAAATTGCATCCCACTTAATCGACATAGCATGGTACAAAAAAATAGG-CCCCGAAGGCCTTGCCAACCTTCATCTCAC---CATAA---------------CCAAAATCTCAACCACACTCCA---CACAGGCCTAATTAAATCTTACCTGGGTTCCTTCGCCCTCACAATCCTTAC-----------------AACGATCCTACTTATC----------CAAAAATAA +s fr1.chrUn 320904101 298 + 349519338 CTCCAAACAACTTAAACCTACACCACACCT---GTCCCCCCACCACTTCTCAAAC-ATACTTGGCTTCTTCCC----AACAATTGTACACCGTGCCTCTCCTAAAATTAATCTCATTTTAGGACAAACAATTGCTACCCAAATTATTGACCTAACCTGACTAGAAAAAGTTGG-ACCCAAAACAATTTCATCTATCAATACTCCCCTCATCT---------------CT---ACCATTAGTAACATCCA---ACAAGGATCAATCAAGACATACCTTGTCCTCTTCCTCACGACCCTTGCTCT-----------------ATCAACCCTCGTTCTT----------CTTACCTAA +s danRer1.chrM 14416 322 + 16596 AGCTAATAAAATTAACAAAAACACTACCCCAGGAATTCCATTCCACTTTTCAATT-TCACTAATCTTCTTTCC----A---ATCCTTCACCGACTAATCCCTATACGAAAATTATTTATAGGGGAGTCAGCAGCC------------------ACTAAAATTGAAAAATCATG-AAGCGAACTATTCGGACCATGCGGAATTGC---ATTTACATTAATAACAGTGGCC---ACCTTTGTTAAGGACCATCGAATAGCGTCAATCAAGTCTTACCTAGCCGTCTTCCTTACCTCTATTATTCTTAAAATAATAATACTGAAACTATACACTTAAATAGCACGAAGCACACCATAA + +a score=0.0 +s hg17.chrM 14149 1 + 16571 C + +a score=180.0 +s hg17.chrM 14149 1 + 16571 C +s panTro1.chr3 35475852 1 - 209662276 T +s mm5.chrM 13547 1 + 16299 T +s canFam1.chrM 13581 1 + 16727 T + +a score=10579.0 +s hg17.chrM 14150 50 + 16571 CTATT--------CCCCCGA-GCAATCTCAATTACAATATATACACCAACAAACAATGT +s panTro1.chr3 35475853 50 - 209662276 CTATT--------ATCCTGA-GTAATTTCAATCACAACATAAATACCAATAAATAATCA +s mm5.chrM 13548 51 + 16299 CAATT-------AATCTCGA-GTAATCTCGATAATAATAAAAATACCCGCAAACAAAGA +s canFam1.chrM 13582 50 + 16727 TAATT--------ACCACGG-GTAACTTCCATGATAACCAACACACCAATTAATAATGA +s fr1.chrUn 320904399 58 + 349519338 CTGCTCGAAGAGCCCCCCGACCCAACCCCCGCACCAGCTCTAATACT-ACAAGCAACGT +s danRer1.chrM 14738 50 + 16596 CTAAG--------ACCTCGA-GTAACCTCTAGTACAACAAACAAAGTCAGAAGCAATAC + +a score=2145.0 +s hg17.chrM 14200 5 + 16571 TCAAC +s panTro1.chr3 35475903 5 - 209662276 TCAAC +s mm5.chrM 13599 5 + 16299 TCACC +s canFam1.chrM 13632 5 + 16727 TCAGC +s danRer1.chrM 14788 5 + 16596 CCAAG + +a score=126.0 +s hg17.chrM 14200 5 + 16571 TCAAC +s danRer1.chrM 14788 5 + 16596 CCAAG + +a score=2043.0 +s hg17.chrM 14205 148 + 16571 CAGTAACCACTACTAATCAACGCCCATAATCATACAAAGC--CCCCGCACCAATAGGATCCTCCCGAATCAACCCTGACCCCTCTCCTTCATAAATTATTCAGCTTCCTACACTATTAAAGTTTACCACAACCACCACCCCATCATACTC +s panTro1.chr3 35475908 148 - 209662276 CAGCAACTACCACTAATCAGCATCCATAACTGTACAAGGCAGCCACACAC--ACAGAATCTTCACGCAACAACCCTGCCCCCTCACCCTCAAAAATCGTCCAGCTCTTTATGCTATTAAAATTAATCATGATCCTCACTGCATCATGCTC +s mm5.chrM 13604 145 + 16299 CAGCTACTACCATCATTCAAGTAGCACAACTATATATTGC--CGCTACCCCAATCCCTCCTTCCAACATAACTCCAACATCATCAACCTCATACATCAACCAATCTCCCAAACCATCAAGATTAATT---ACTCCAACTTCATCATAATA +s rn3.chr8 86333738 140 - 129061546 CAGCCACCATGGTCAACCAAGTCTCACAACTGCATATAGA--TGCTACCCTAGCTGCTTCTCTGTCTAGTCACCCAATCTCATCTCTCTCATAAA--------CACCCCATGTTTTTAAGTTCTACCACCACCCCCACCCCACAGTAACA +s canFam1.chrM 13637 146 + 16727 CTGTAACAACCACCAACCAAGTCCCATAACTGTACAGAGC--CGCAATACCCATAGCCTCTTCACTAAAAAACCCAGAGTCCCCCGTATCATAGATCACTCAATCCCCTATTCCATTAAACTTTAATACTACCTCCACCTCGTCATCC-- +s fr1.chrUn 320904457 128 + 349519338 CAATAACAA-----GACCCAGGCCCCCAATAGT--AATAC--TCCCCCACCGCTAGAATATATAAGTGAAACCCCGTCCATATCACCTCGAAAAACTGCATCTCAGTCTATCTCTCCAGAA---------ACC----CCTCATCACACCT +s danRer1.chrM 14793 132 + 16596 CACAAATCACTAATATTTTTCCACCTGACGAATATATTAT--TGCAACCCCGCTTACATCAGCTCGAATAACAGAAAACTCTTTAAAAGCATCAA-----------CCGATATTAATAA-----ACCAGTGTCACCAGTTAATAAAAACC + +a score=-17437.0 +s hg17.chrM 14353 57 + 16571 TTTCACCCACAGCACCAATCC--TACCTCCATCG--CTAACCCC---ACTAAAACAC---TCACCAA +s mm5.chrM 13752 54 + 16299 AAGCACACAAATTAAAAA-----AACCTCTATAA--TCACCCCCAATACTAAAAAAC------CCAA +s rn3.chr8 86333883 54 - 129061546 TTGTGTATACAGCCCC-------CAACTCCAGAAATATAACCCTAACAACAAACTAC------CTAA +s canFam1.chrM 13783 59 + 16727 TTCAAAATATAGCAAGCAGTCAACAATTCAGACA--ACAAACC-AGTAATAAAAGCC-----GCTAG +s fr1.chrUn 320904585 57 + 349519338 ------CTTCATCAAGGACCA--TATTTGTGTAC--AAGATACCAAAAACAAAAAAAAAATATCCAA +s danRer1.chrM 14925 52 + 16596 ---CAGCCGCCACAATTA-----CAACCAGACCA--TAAACCATAACACGTCAAAAC-----ACCAC + +a score=31182.0 +s hg17.chrM 14410 85 + 16571 GACCTCAACC--CCTGACCCCCA--TGCCTCAGGATACTCCTCAATAGCCATCGCTGTAGTATATCCAAAGACAACCATCATTCCCCCT +s panTro1.chr3 35476113 85 - 209662276 GATATCAATA--CTTGACCCTTA--TGTTTCAGGATACTCCTCAGCAGCCATCACCGTGGTATAGCCATAAACAATCATCATACCACAC +s mm5.chrM 13806 85 + 16299 --AATTAATCAGTTAGATCCCCA--AGTCTCTGGATATTCCTCAGTAGCTATAGCAGTCGTATATCCAAACACAACCAACATCCCCCCT +s rn3.chr8 86333939 75 - 129061546 TAATTCAATG----AGAACATCA--AGTCTCGGGTTACTTCTCCAAAGCAGT--------TATAATTGAACACAACTAGCATACCACTG +s canFam1.chrM 13842 85 + 16727 AACAGCCTTA--TTTGAAACTCA--CACCTCAGGGTATTGCTCAGTAGCCATAGCAGTTGTATAACCAAATACTACTAATATACCCCCC +s fr1.chrUn 320904650 87 + 349519338 AAAACCACCT--GTCAACCTGTAGGCGCCTTAGGATCCTTATCTGCAGACAGCGCTGACGAATAAATAAACACAACCAGTATGCCCCCC +s danRer1.chrM 14977 76 + 16596 -----------ACGGTCACCCCA--CGCTTCAGGAAAAGGCTCGGCTGCTAGGGCCGCTGAATAAGCAAACACTACAAGCATCCCACCT + +a score=35925.0 +s hg17.chrM 14495 109 + 16571 AAATA---AATTAAAAAAACTATTAAACCCATATAA-CCTCCCC----CAAAATTCAGAATAATAACACACCCGACC----ACACCGCTAA------CAATCAGTACTAA-AC------CCCCATAAATAGGAG +s panTro1.chr3 35476198 107 - 209662276 AAATGGGGAATTAAAAAAAC-ATCAACCCCATGAAA-GCACCAC----CAAAATTCA--------ACAAATTCAACCCACAGCACCACTAA------TAATTAGCCCTAG-AC------CTCCGTAAATAGGAG +s mm5.chrM 13891 109 + 16299 AAATA---AATTAAAAAAACTATTAAACCTAAAAAC-GATCCAC----CAAACCCTAAAACCATTAAACAACCAACA----AACCCACTAA------CAATTAAACCTAA-AC------CTCCATAAATAGGTG +s rn3.chr8 86334585 111 - 129061546 AACTA---CATTAGAAATGCAATTAATCCTAAAAGGTAACCCAG----AAAAATTTATGGCAACTAAATAACACATA----CACCCAGTAA------TACTTAAATCTTGTGT------GCCCATAAATAAGAG +s canFam1.chrM 13927 109 + 16727 AAATA---AATTAAAAATACTATCAACCCTAAAAAA-GAACCCC----CAAAATTCAGAACAATCGCACAACCAATC----CCACCGCTAA------TAATTAGCACAAG-CC------CACCATAAATAGGAG +s fr1.chrUn 320904737 109 + 349519338 ATATA---AATCATTAACAACACCAAAGACAAGAAA-GTCCCCCCGTGCAAAACTGA----------------AGCC----CCACAGCAAAGAAGTGCAACCAGCACCAA-ATTGAAAACTCCATAAAAAGGAG +s danRer1.chrM 15053 109 + 16596 AAATA---AATCAAAAAAAGAATTAGAGACAAAAAT-GAACCCC----CATAACTAACTAAAATTCCACATCCAACC----CCTGCCACAA------CTACTAAACCAAA-TG------CAGCAAAATAAGGAG + +a score=75856.0 +s hg17.chrM 14604 139 + 16571 AAGGCTTAGAAGAAAACCCCACAAACCCCATTACTAAACCCACACTCAACAGAAACAAA------GCATACA---TCATTATTCTCGCACGGACTACAACCACGACCAATGATATGAAAAACCATCGT--TGTATTTCAACTACAAGAAC +s panTro1.chr3 35476305 139 - 209662276 AAGATTTCAAAGAGAAACCTACAAATCCTATAACCAAAGTGACACTTAATAAAAATATA------GTATATG---CCATTATTCCCACATGGACTATAATCATGACTAATGACATGAAAAATCATTGT--AGTATTTCAACTATAAGAAG +s mm5.chrM 14000 139 + 16299 AAGGCTTTAATGCTAACCCAAGACAACCAACCAAAAATAATGAACTTAAAACAAAAATA------TAATTAT---TCATTATTTCTACACAGCATTCAACTGCGACCAATGACATGAAAAATCATCGT--TGTAATTCAACTACAGAAAC +s rn3.chr2 24398790 122 - 258222147 AGGGGTTTGAAGAACATCCTACCAAACCT--------------ACTTAATGTA-----A------GAGTATT---TCATAATTTCCACATAGACTGTAACTGGGAATAATGACACAAAACATCACCACTGTGTACTTTGCCTGTTAGAAT +s canFam1.chrM 14036 142 + 16727 ATGGTTTAGTGGCAAAACCCACAAAACTCATCACAAAAACGATACTTAAAATAAATACA------ATGTATGTTATCATTATTCCTACATGGAATTTAACCATGACTAATGACATGAAAAATCATCGT--TGTATTTCAACTATAAGAAC +s fr1.chrUn 320904846 139 + 349519338 CAGGATTTGTAGACAACACAA------TTATCACAACCAACATCCCTAATAAAAGAAAAACAAGCGCATAAA---ACATAGTTTCTGCCAGGATTTTAACCAGGACCTATGGCGTGAAAAACCATCGT--TGTTACTCAACTACAAAAAC +s danRer1.chrM 15162 139 + 16596 CCGGATTAGAAGCAATAGCAATCATACCCCCAACTAGAGCTGCCATCAAAAAAGACAAA------TAAAATG---CCATAATTCTTACTCAGACTTTAACTGAGACCGGTGACTCGAAAAACCACTGT--TGTAGTTCAACTACAAGAAC + +a score=846407.0 +s hg17.chrM 14743 837 + 16571 --ACC-AATGACC-CCAATAC--GCAAAATTAACCCCCTAATAAAA----TTAATTAACCACTCATTCATCGACCTCCCCACCCCATCCAACATCTCCGCATGATGAAACTTCGGCTCACTCCT-TGGCGCCTGCCTGATCCTCCAAATCACC-------ACAGGACTATTCCTAGCCATACACTACTCACCAGACGCCTCAACCGCCTTTTCATCAATCGCCCACATCACTCGAGACGTAAATTATGGCTGAATCATCCGCTACCTTCACGCCAATGGCGCCTCAATATTCTTTATCTGCCTCTTCCTACACATCGGGCGAGGCCTATATTACGGATCATTT------CTCTACTCAGAAACCTG-----AAACATCGGCATTATCCTCCTGCTTGCAACTATAGCAACAGCCTTCATAGGCTATGTCCTCCCGTGAGGCCAAATATCATTCTGAGGGGCCACAGTAATTACAAACTTACTATCCGCCATCCCATACATTGGGACAGACCTAGTTCAATGAA----TCTGAGGAGGCTACTCAGTAGACAGTCCCACCCTCACACGATTCTTTACCTTTCACTTCATCTTACCCTTCATTATTGCAGCCCTAGCAGCACTCCACCTCCTATTCTTGCACGAAACGGGATCAAACAACCCCCTAGGA-----ATCA---CCTCCCATTCCGATAAAATCACCTTCCACCCTTACTACACAATCAA----------AGACGCCCTCGGCTTACTTCTCTTCCTTCTCTCCTTAATGACATTAACACTATTCTCACCAGACCTCCTAGGCGACCCAGACAATTATACCCTAGCCAACCCCTTAAACACCCCTCCCCACATCAAGCCCGAATGATATTTCCTATTCGCCTA +s panTro1.chr3 35476444 837 - 209662276 --GCT-AATGGCC---AATATCTGTAAAACACACCCGCTAATAAAAACTATTAATTA--------TTCATTGATCTTCCCATATCATCTAACCTTTCTATATCATGAAACCTTGGCTCACTTTT-TGGTGCCTGCCTAACCCTCCAAATC--CTTACAGGACAGGACTGCTTTTGGCCATGCACTACACATCAAACACCTCAACTGCCTTCTCTTCAGTCGCTCATATCAGCCAACATGTAAACTTCGGCTGAATGGTTCGCTATTTTCATGCTAATGGCAGTTCAATATTTTTTATCTGCCTCTTCTTACACATTGGCTGAGGTTTATACTATGGATCATTTACATTCCT------AGAAACCTG-----AAATATTGGCATCATCCTCCTACTCAAAACAATGGCAACAGCACTCATAGGCTACATGCTCCCATGAGGCCAGATATCATACTGAGGTGCTACAGTAATTACAAATCTACTATCAGCCATCCCATATATTGGAACTGACCTTGTGCAATAAA----TCTGAGGTGGGTTCTCAGTCGACAAAGCCACCCTTACATGATTCTTCACTTTCCATTTCATCTTA-CCTTCATCATTACAGCCCTAGCAGCTGTTCACCTTTTATTCCTACATGAAACAGGATCTAATAACCCTTCAGGGTTTTCATCAGACCCT--------GACAACATTACCTTCCACCCCTACCATACTACCAA----------AGATATTTTAGGTTTAATTTTTCTCCTCCTCCTCCTAATAATTCTAGTACTATTTTCACCTGACTTCCTGGGCGACCCAGATAACTATGCATTAGCCAGCCCCCTCAACACCCCATCCCACATTAAGCCAGAGTGGTACTTTTTGTTTGCCTA +s mm5.chrM 14139 838 + 16299 --ACCTAATGACA---AACATACGAAAAACACACCCATTATTTAAA----ATTATTAACCACTCATTCATTGACCTACCTGCCCCATCCAACATTTCATCATGATGAAACTTTGGGTCCCTTCT-AGGAGTCTGCCTAATAGTCCAAATCATT-------ACAGGTCTTTTCTTAGCCATACACTACACATCAGATACAATAACAGCCTTTTCATCAGTAACACACATTTGTCGAGACGTAAATTACGGGTGACTAATCCGATATATACACGCAAACGGAGCCTCAATATTTTTTATTTGCTTATTCCTTCATGTCGGACGAGGCTTATATTATGGATCATATACATTTAT------AGAAACCTG-----AAACATTGGAGTACTTCTACTGTTCGCAGTCATAGCCACAGCATTTATAGGCTACGTCCTTCCATGAGGACAAATATCATTCTGAGGTGCCACAGTTATTACAAACCTCCTATCAGCCATCCCATATATTGGAACAACCCTAGTCGAATGAA----TTTGAGGGGGCTTCTCAGTAGACAAAGCCACCTTGACCCGATTCTTCGCTTTCCACTTCATCTTACCATTTATTATCGCGGCCCTAGCAATCGTTCACCTCCTCTTCCTCCACGAAACAGGATCAAACAACCCAACAGGATTAAACTCAGATGCA--------GATAAAATTCCATTTCACCCCTACTATACAATCAA----------AGATATCCTAGGTATCCTAATCATATTCTTAATTCTCATAACCCTAGTATTATTTTTCCCAGACATACTAGGAGACCCAGACAACTACATACCAGCTAATCCACTAAACACCCCACCCCATATTAAACCCGAATGATATTTCCTATTTGCATA +s rn3.chr2 24398912 776 - 258222147 --ATG-AACAACC---GATACTCCAAAATTCCACTTTTTAACAAAA----ATTAACAATCATTTGTTCATTGATCTACCAGACTGGTAAAACATTTCCGCATGATGAGAGCCTGGATCTGTGGTGGGGAATCTGCCAGGCTCTC----------------A---------TCATAGCCCAGGACTATCCATCACATATAATAATGGCACTCTCTT-----ACCCAAATTTGTCAAGTTGCA----------------TCAGCTGTTTCTATGTGAATAGAACACAAACATTCTTTACCTGCCTGTTAATCCATGAAAGTTGAAGGTCA---TGTGAATTGCATGTTTTTCT------ATAAATCTGGTTAAAAACACTAGGATTTGCTTATTACTCCC--TGATAGCTACAGCATATCTGGCCCATATGTTATTGTAAGGACAAATGGCTTTCTGAGTTCCAACAGTAGTCACAAACTCACTGGCAATGATTCCACATATC---ATTTCACTAATTTTATAGAGTGTTCTGTGGTGGGCA-TGAGATGACAGAAT--GCCTCACTTGTTTTCTCATCATAAAATTTATTTTTTTATTCAT--------CCCTAGTTATTCTG-GTCCCCTGTCTCTCTGTGAGACAAGATACAGGAATCCAC--AGAGTCTCATTTGACTGG--------GGCAAAATCCTGGATCATTTTTGGTGTATAATTAAGCTATCTGGGATGTCTTCTAGGTTTGCTTGTAGTAC-----------------CCAGTGCTATTCTCCTCCAACTTCTTATGATACAGAGACAATCCCATACCAGACAACCCACTTGATATCTTATCTCA-ATCAAGTCAAATAGAAACTT--TGTCTGCCTA +s canFam1.chrM 14178 837 + 16727 --ATT-AATGACC---AACATTCGAAAAACCCACCCACTAGCCAAA----ATTGTTAATAACTCATTCATTGACCTCCCAGCGCCGTCTAACATCTCTGCTTGATGGAACTTCGGATCCTTACT-AGGAGTATGCTTGATTCTACAGATTCTA-------ACAGGTTTATTCTTAGCTATGCACTATACATCGGACACAGCCACAGCTTTTTCATCAGTCACCCACATCTGCCGAGACGTTAACTACGGCTGAATTATCCGCTATATGCACGCAAATGGCGCTTCCATATTCTTTATCTGCCTATTCCTACATGTAGGACGAGGCCTATATTACGGATCCTATGTATTCAT------AGAAACATG-----AAACATTGGAATTGTACTATTATTCGCAACCATAGCCACAGCATTCATGGGCTATGTACTACCATGAGGACAAATATCATTTTGAGGAGCAACTGTAATCACTAATCTTCTCTCTGCCATCCCTTATATCGGAACTGACTTAGTAGAATGGA----TCTGAGGCGGCTTCTCAGTGGACAAAGCAACCCTAACACGATTCTTTGCATTCCATTTCATCCTCCCTTTCATCATCGCAGCTCTAGCAATAGTACACCTCCTATTTCTACACGAAACCGGATCCAACAACCCTTCAGGAATCACATCAGACTCA--------GACAAAATTCCATTTCACCCTTACTACACAATCAA----------GGATATCCTAGGAGCCTTACTCCTACTCCTAATCCTAATATCACTAGTTTTATTTTCACCTGACCTATTAGGAGACCCAGATAACTACACCCCTGCAAACCCCCTAAACACCCCTCCACATATTAAACCTGAGTGATATTTTCTATTCGCCTA +s galGal2.chrM 14888 840 + 16775 --ACT-AATGGCACCCAACATTCGAAAATCCCACCCCCTACTAAAA----ATAATTAACAACTCCCTAATCGACCTCCCAGCCCCATCCAACATCTCTGCTTGATGAAATTTCGGCTCCCTATT-AGCAGTCTGCCTCATGACCCAAATCCTC-------ACCGGCCTACTACTAGCCATGCACTACACAGCAGACACATCCCTAGCCTTCTCCTCCGTAGCCCACACTTGCCGGAACGTACAATACGGCTGACTCATCCGGAATCTCCACGCAAACGGCGCCTCATTCTTCTTCATCTGTATCTTCCTTCACATCGGACGAGGCCTATACTACGGCTCCTACCTCTACAA------GGAAACCTG-----AAACACAGGAGTAATCCTCCTCCTCACACTCATAGCCACCGCCTTTGTGGGCTATGTTCTCCCATGGGGCCAAATATCATTCTGAGGGGCCACCGTTATCACAAACCTATTCTCAGCAATTCCCTACATTGGACACACCCTAGTAGAGTGAG----CCTGAGGGGGATTTTCAGTCGACAACCCAACCCTTACCCGATTCTTCGCTTTACACTTCCTCCTCCCCTTTGCAATCGCAGGTATTACTATCATCCACCTCACCTTCCTACACGAATCAGGCTCAAACAACCCCCTAGGCATCTCATCCGACTCT--------GACAAAATTCCATTTCACCCATACTACTCCTTCAA----------AGACATTCTGGGCTTAACTCTCATACTCACCCCATTCCTAACACTAGCCCTATTCTCCCCCAACCTCCTAGGAGACCCAGAAAACTTCACCCCAGCAAACCCACTAGTAACCCCCCCACATATCAAACCAGAATGATATTTTCTATTCGCCTA +s fr1.chrUn 320904985 837 + 349519338 --ACT-AATGGCC---AGCCTACGCAAAACCCACCCCCTACTAAAA----ATCGTAAACGACATAGTAATTGACCTTCCTACCCCCTCAAACATTTCCGCCTGATGAAACTTTGGCTCTCTACT-CGGATTATGCCTTATTACACAAATCATC-------ACAGGACTGTTCCTTGCAATACACTACACATCCGACATCTCTACCGCCTTTTCATCCGTAGCCCACATTTGCCGAGACGTAAACTACGGCTGACTAATTCGCAATCTACACGCAAACGGTGCCTCATTCTTTTTTATTTGCTTATACTCCCACATCGGCCGAGGTCTTTACTATGGCTCTTACCTAAGTAA------AGAAACCTG-----AAACGTAGGGGTAGTCCTCTTACTTTTAGTAATGGCCACCGCTTTCGTAGGCTACGTTCTCCCATGAGGACAAATATCCTTCTGAGGCGCCACTGTAATTACAAACCTGCTCTCTGCTGTCCCCTACGTAGGAAACACGCTCGTTCAATGAG----TATGAGGAGGCTTTTCAGTAGACAGCGCCACTCTAACACGATTCTTTGCCTTCCACTTCCTCCTCCCATTTATCGTTGCAGCCGCTGCCATCGTACATCTTATTTTTCTTCACGAAACAGGCTCCAACAATCCCCTAGGACTTAATTCAAACGCA--------GACAAAATCCCATTCCACCCATACTTCTCTTACAA----------AGACCTCCTGGGCTTCACAATCATGCTCTCAGCCCTCGCAACACTCGCCCTATTCTCTCCAAACTACCTCGGAGACCCTGACAACTTCACACCAGCCAACCCTCTAGTTACCCCCGCCCACATTAAACCAGAATGGTATTTCCTATTTGCATA +s danRer1.chrM 15301 839 + 16596 TGCTT-AATGACA---AGCCTGCGAAAAACACACCCAGTTTTAAAA----ATCGCTAATGACGCATTAGTTGATTTGCCAACGCCACTAAATATTTCAGCGTGATGAAATTTTGGATCTCTCCT-TGGATTATGTCTTATTACACAAATTTTA-------ACAGGACTATTTTTAGCAATACACTACACCTCAGACATCTCAACAGCATTTTCATCTGTTGTGCATATTTGCCGAGATGTAAATTTCGGCTGACTTATTCGGAGCATCCATGCCAATGGGGCTTCCTTCTTCTTCATCTGCCTGTATATTCACATCGCCCGAGGACTATATTACGGATCTTATCTTTATAA------TGAAACTTG-----AAACATCGGAGTAGTCCTGTTCTTACTTGTAATAATAACAGCTTTTGTGGGCTACGTCCTTCCATGGGGCCAAATATCATTCTGAGGGGCCACAGTAATTACTAACCTATTATCGGCCGTTCCTTACGTGGGAGATACCCTAGTGCAATGAA----TCTGAGGGGGATTCTCAGTAGACAATGCAACCCTTACACGATTCTTCGCATTCCACTTTTTATTACCATTTATTATCATCGCCATAGTTATTCTACACTTGCTATTTCTCCACGAAACCGGATCAAATAACCCCCTTGGCCTAAACCCCAACATG--------GATAAAATCCCCTTTCATCCTTATTTTTCAAATAA----------AGACCTCCTTGGTTTTGTAATTATATTATTTTCCCTCTCACTATTAGCACTATTCTCACCAAACCTCTTAGGAGATCCAGAAAATTTCACCCCTGCTAACCCTCTAGTAACACCTCCTCACATTAAACCAGAATGATATTTCCTATTCGCATA + +a score=109405.0 +s hg17.chrM 15580 134 + 16571 CACAATTCTCCGATCCGTCCCTAACAAACTAGGAGGCGTCCTTGCCCTATTACTATCCATC----CTCATCCTAGCAATAATCCCCATCCTCCATATATCCAAACAACAAAGCATAATATTTCGCCCACTAAGCCAAT +s panTro1.chr18 72834051 133 - 83875239 TGCAATTCTACGATCCATCCCTAACAAACCAGGAGGTGTACTAGCCC--TTA-TATCC-TCCTTTCTCATTCCAGCAATTAT-CCCATACTTCATACGTCTAAACAATAAAGCATAATATTCTGTCCATTAAGTCAAT +s mm5.chrM 14977 134 + 16299 CGCCATTCTACGCTCAATCCCCAATAAACTAGGAGGTGTCCTAGCCTTAATCTTATCTATC----CTAATTTTAGCCCTAATACCTTTCCTTCATACCTCAAAGCAACGAAGCCTAATATTCCGCCCAATCACACAAA +s rn3.chr2 24399688 92 - 258222147 ----------------------TGCAAACT-----------TGGCCCCACAG-------TT----TTAATCTTAACTACAGC-TGAGTAGTTCCTGTAGCTAAA-AATGAAGCACAGTATTCTGACCCTTTGACCCTT +s canFam1.chrM 15015 134 + 16727 TGCTATCCTACGATCCATTCCTAATAAATTAGGAGGTGTACTCGCCCTAGTATTCTCCATC----CTAATCTTGGCATTCATTCCACTCCTCCACACATCTAAGCAACGCAGCATAATATTCCGGCCCCTTAGCCAAT +s galGal2.chrM 15728 134 + 16775 TGCCATCCTACGCTCCATCCCCAACAAACTTGGAGGTGTACTAGCCCTAGCAGCCTCAGTC----CTCATCCTCTTCCTAATCCCCTTCCTCCACAAATCTAAACAACGAACAATAACCTTCCGACCACTCTCCCAAA +s fr1.chrUn 320905822 134 + 349519338 CGCAATTCTACGGTCTATCCCCAATAAACTAGGAGGAGTCCTGGCCCTTCTTGCCTCAATC----TTAATTCTTATAGTAGTTCCTTTCTTACACACCTCTAAACAACGAAGCCTAACATTCCGCCCACTATCACAAT +s danRer1.chrM 16140 134 + 16596 CGCCATTCTACGATCTATCCCAAACAAACTAGGAGGTGTACTAGCTCTCTTATTTTCCATT----TTAGTATTAATAGTAGTACCAATTTTACACACTTCTAAACAGCGAGGAATAGCATTCCGCCCAGTTACCCAAT + +a score=123010.0 +s hg17.chrM 15714 141 + 16571 CACTTTATTGACTCCTAGCCGCAGACC----TCCTCATTCTAACCTGAATCGGAGGACAACCAGTAAGCTACCCTTTTACCATCATTGGACAAGTAGCATCCGTACTATACTTCACAACAATCCT--AATCCTAATACCAACT-----ATCT +s panTro1.chr11 95342837 135 - 123086034 CACTTTATTGATTCCTAGCCGCAGACC----TCCTCGCCCTAACCTGAATCGGAGGACAACCAGTAAGCTATCCCTTCACCATCATCGGACAAGTAGCCTCCGTACTATACTTCACAAC--------AATTCTAATACCAGCC-----ACCT +s mm5.chrM 15111 138 + 16299 TTTTGTACTGAATCCTAGTAGCCAACC----TACTTATCTTAACCTGAATTGGGGGCCAACCAGTAGAACACCCATTTATTATCATTGGCCAACTAGCCTCCATCTCATACTTCTCAATCATCTT--AATTCTTATACCA--------ATCT +s rn3.chr2 24399786 141 - 258222147 ACTTATTTTAAATCCTAGTAGCTGACCCTCATGCTCATATGAATCTGAATTTTAAG---AGTAGTAA------CTTTTATTA--ATTTTATAAATATTATCCATCCTGTATATTCCCATGCTAATGCAATTTTTAAGCTTAATGGGGGAGCT +s canFam1.chrM 15149 140 + 16727 GCCTATTCTGACTTTTAGTCGCCGATC----TTCTCACTTTAACATGAATTGGAGGACAACCAGTTGAGCACCCTTTCATCATTATCGGACAAGTCGCTTCAATCTTATATTTCACCATCTTATT--GATCCTAATACCAAC------AGTT +s galGal2.chrM 15862 141 + 16775 CCCTATTCTGACTTCTAGTAGCCAACC----TTCTTATCCTAACCTGAATCGGAAGCCAACCAGTAGAACACCCCTTCATCATCATTGGCCAAATAGCATCCCTCTCTTACTTCACCATCCTACT--TATCCTCTTCCCCACA-----ATCG +s fr1.chrUn 320905956 140 + 349519338 TCCTATTCTGAACCCTAATTGCCGACG----TCGTCATCCTAACCTGAATTGGAGGCATACCCGTCGAACATCCTTACATTATTATCGGACAAATTGCCTCAGTACTTTACTTCTCTCTCTTCCT--AATCTTGATGCCAAT------AGCC +s danRer1.chrM 16274 141 + 16596 TTCTGTTCTGAACACTGGTAGCAGACA----TGCTTGTACTAACATGAATTGGAGGGATACCAGTAGAACACCCCTACATCATCATTGGACAAATAGCATCAATCTTATATTTTTCACTATTCTT--AGTCTTATTCCCAATT-----ACAG + +a score=59534.0 +s hg17.chrM 15855 162 + 16571 CCCTAATTGAAAACAAAATACTCAA--ATGGGCC---TGTCCTTGTAGTATAAA-CTAATACACCAGTCTTGTAAA-CCGGAGA-CGAAAA--------CCTTTTTCCAAGGACAA----ATCAGAGAAAAAGTCTT--TAACTCCACCATTAGCACCCAAAGCTAAGATTCTAATTTAAACTA +s panTro1.chr18 72834325 163 - 83875239 CCCTGATGGAAAATAAGCTATTTAA--ATTAAAC---TACCCTTGTAGTATAAT-TCAATACTCTGGTCTTGTAAA-CCAGAAA-TGGAGA----ATTCCC---TTCCCAGGACAA----CTCAGGCAAAAAGCCTTC-CCACTTCACCGTCAACACCCAAAACTGAAATTCTAA-TTAAACTA +s mm5.chrM 15252 163 + 16299 GAATTATCGAAGACAAAATACTAAA--ATTATATCCATGTCTTGATAGTATAAA--CATTACTCTGGTCTTGTAAA-CCTGAAA-TGAAGAT---CTTCTC---TTCTCAAGACA------TCAAGAAGAAGGAGCT--ACTCCCCACCACCAGCACCCAAAGCTGGTATTCTAA-TTAAACTA +s rn3.chr2 24399927 140 - 258222147 TCCTAAGTGAAG-------------------------AATTCTTGGAGCATATT-AAACTACTTTGGCTTTGGAAACCCCAAAA-TGGAGA----ACAGTT---CTCTCTAGAGTA----CTCAATCAAGATGCCAT-----TTCTTCCATCACTACCCAACACTGAAATTTTAT-ATGGAATA +s canFam1.chrM 15290 160 + 16727 GCGTTATCGAAAACAACCTTCTAAA--ATGAAG----AGTCTTTGTAGTATAAT--CATTACCTTGGTCTTGTAAA-CCAAAAA-TGGAGAGTAACCGCCC---TCCCTAAGAC-------TCAAGGAAGAAGCTCT---TGCTCCACCATCAGCACCCAAAGCTGAGATTCTTC-TTAAACTA +s galGal2.chrM 16003 167 + 16775 GAACACTAGAAAACAAAATACTCAACTACTAAAA---TACTCTAATAGTTTATG--AAAAACATTGGTCTTGTAAA-CCAAAAACTGAAGACT--CCACCC---TTCTTAGAGTA------TCAGAAAAGGAGGGCTCAAACCTCCATCTCCAGCTCCCAAAGCTGGTATTTTCAAATAAACTA +s fr1.chrUn 320906097 166 + 349519338 GTTGACTAGAAAACAAAATACTAAA--CTAACA----AGCATTAGTAGCTCAGATTCAGAGCGTCGGTCTTGTAAA-CCGAATG-TCGGGGGTTAAAGTCC---CCCCTTATGC-------TCAAAAAGAAGGGACTTCAACCCCCACCACTGGCTCCCAAAGCCAGCATTCTTAATTAAACTA +s danRer1.chrM 16415 174 + 16596 GGATTTTAGAGAATAAGGCACTCCA--ATGAAGC---TGCCCTAGTAGCTTAGTTTTAAAGCATCGGTCTTGTAAT-CCGAAGA-TCGGAGGTTAGACCCC---TCCCTAGCGCTAAATTACCAGAAAAGAGAGATTTTAACTCACACCCCTGACTCCCAAAGCCAGGATTCTAAATTAAACTA + +a score=-1650.0 +s hg17.chrM 16017 3 + 16571 -TTC +s panTro1.chr18 72834488 3 - 83875239 -TTC +s rn3.chr2 24400068 2 - 258222147 -TT- +s canFam1.chrM 15450 3 + 16727 -TTC +s galGal2.chrM 16170 3 + 16775 -CTC +s fr1.chrUn 320906264 2 + 349519338 -TT- +s danRer1.chrM 16589 3 + 16596 TTT- + +a score=4076.0 +s hg17.chrM 16017 7 + 16571 TTCTCTG +s rn3.chr2 24400067 7 - 258222147 ATTTGTA +s canFam1.chrM 15450 7 + 16727 TTCCCTG +s galGal2.chrM 16170 7 + 16775 CTCTCTG +s fr1.chrUn 320906263 7 + 349519338 CTTTTTG +s danRer1.chrM 16589 7 + 16596 TTTTCTG + +a score=4510.0 +s hg17.chrM 16020 4 + 16571 TCTG +s panTro1.chr11 95343137 4 - 123086034 TCTG +s rn3.chr2 24400070 4 - 258222147 TGTA +s canFam1.chrM 15453 4 + 16727 CCTG +s galGal2.chrM 16173 4 + 16775 TCTG +s fr1.chrUn 320906266 4 + 349519338 TTTG +s danRer1.chrM 16592 4 + 16596 TCTG + +a score=-745.0 +s hg17.chrM 16024 2 + 16571 TT +s panTro1.chr11 95343141 2 - 123086034 TT +s rn3.chr2 24400074 2 - 258222147 TT +s canFam1.chrM 15457 2 + 16727 AC +s galGal2.chrM 16177 2 + 16775 AA +s fr1.chrUn 320906270 2 + 349519338 AT + +a score=-677.0 +s hg17.chrM 16024 2 + 16571 TT +s rn3.chr2 24400074 2 - 258222147 TT +s canFam1.chrM 15457 2 + 16727 AC +s galGal2.chrM 16177 2 + 16775 AA +s fr1.chrUn 320906270 2 + 349519338 AT + +a score=0.0 +s hg17.chrM 16026 12 + 16571 CTTTCATGGGGA + +a score=-2533.0 +s hg17.chrM 16026 1 + 16571 C--- +s panTro1.chr11 95343143 1 - 123086034 C--- +s rn3.chr2 24400076 1 - 258222147 T--- +s canFam1.chrM 15459 1 + 16727 A--- +s galGal2.chrM 16179 4 + 16775 ACCC + +a score=-1884.0 +s hg17.chrM 16026 1 + 16571 C--- +s rn3.chr2 24400076 1 - 258222147 T--- +s canFam1.chrM 15459 1 + 16727 A--- +s galGal2.chrM 16179 4 + 16775 ACCC + +a score=-1714.0 +s hg17.chrM 16027 11 + 16571 TTTCATG------GGGA +s panTro1.chr11 95343144 11 - 123086034 TTTCATG------GGGA +s mm5.chrM 15415 11 + 16299 CTTCTTG------AGTA +s rn3.chr2 24400077 17 - 258222147 TTTTCTAACAGACAGAA +s galGal2.chrM 16183 3 + 16775 --------------TTA + +a score=-13109.0 +s hg17.chrM 16038 35 + 16571 AGCAGATTT-----GGGTACCA--CCCAAG--TATTGACTCACC +s panTro1.chr11 95343155 35 - 123086034 AGCAAATTT-----GGGTACCA--CCCAAG--TATTGGCTCACC +s mm5.chrM 15426 25 + 16299 CATAAATTT-----ACATAGTA--CAACAG--TA---------- +s rn3.chr2 24400094 42 - 258222147 AACAGACCTTTTAAAAGTACTAGGTCCAAA--TTTCCACTTACC +s canFam1.chrM 15460 26 + 16727 --------------CCCCTACA--TTCATA--TATTGAATCACC +s galGal2.chrM 16186 37 + 16775 AACCGCCCG-----AATTGCCC--CCCGAGACAACCCACGCACA +s fr1.chrUn 320906272 21 + 349519338 AATACATAT-----ATGTATTA--TCCC---------------- + +a score=-154.0 +s hg17.chrM 16073 3 + 16571 CAT +s panTro1.chr11 95343190 3 - 123086034 CAT +s mm5.chrM 15451 3 + 16299 CAT +s canFam1.chrM 15488 2 + 16727 TA- +s galGal2.chrM 16231 1 + 16775 --T +s fr1.chrUn 320906293 3 + 349519338 CAT + +a score=0.0 +s hg17.chrM 16076 9 + 16571 CAACAACCG + +a score=1632.0 +s hg17.chrM 16076 6 + 16571 -CAACAA +s panTro1.chr11 95343193 6 - 123086034 -CAACAA +s galGal2.chrM 16232 7 + 16775 ACAACAA + +a score=228.0 +s hg17.chrM 16082 3 + 16571 CCG +s panTro1.chr11 95343199 3 - 123086034 CCG +s rn3.chr7 48860662 3 - 143082968 CTG +s canFam1.chrM 15492 3 + 16727 GTG +s galGal2.chrM 16239 1 + 16775 --A + +a score=-66332.0 +s hg17.chrM 16085 177 + 16571 CTAT----GTATTTC---GTACATTA--CTGCCAGCCACCATGAATATTGTACGGTACCATAAATACTTGACCACCTGTAGTACATA-AAAACCCAACCCACATCAAACCCCCCCCCCCCAT--------GCTTACAAGCAAGTACAGCAAT-------CAACCTTCAACTATCACACATCAAC--TGCAACTCCAAAGCCA---CC +s panTro1.chr11 95343202 182 - 123086034 CCAT----GTATATC---GTGCATTA--CTGCCAGCCACCATGAGTATTATATAGTACCATAAATACTTGAACATCCATAGTACATACAAAACCCATCCCACATTAAA-ACCTCCTCCCAAT--------GCTTACAAGCACGAACAGCGATTGGCCCACA-----CAACTACCGAACATTAAC--CCTATCTCCAAAGACAATCCC +s mm5.chrM 15454 84 + 16299 TTAT----GTATATC---GTACATTA-----------------------------------AACTATTT----------------------------------------------TCCCCAA--------GCATATAAGCTAGTACATTAA---------------------------ATCAATGGTTCAGGTCATAAAATAATCAT +s rn3.chr7 48860665 152 - 143082968 GCAT----GCA-------GTGCATAA------------TAATGTGTATAGTGCA-------TACTACATTTATGTATATAATATATT--------------AATTTATTTCCCCTCCCATATAATAAAGAGCTAACTACTAAATACAGAAG-----ACTAAACATTCTAATACAAGTAAATATT--TTCATTAACAGGGCCA----T +s canFam1.chrM 15495 138 + 16727 CTATGTCAGTATCTCCAGGTAAACCCTTCTCCCCTCCCCTATGTACGTCGTGCATT-----AATGGTTT----------------------------------------------GCCCCAT--------GCATATAAGCATGTACATAAT-----ATTATATCCTTACATAGGACATATTAAC--TCAATCTCATAATTCA---CT +s galGal2.chrM 16240 163 + 16775 CAAA----GCTAACA---ACAAACCT--CACCCAGCCACCAAAAACAACCCAACCCCACATGAATA---AAACACCGCAACTCCACTAAAATCCAACCGAGCAAAAGACACACCCCCGCCAT--------------------CAACAGTAA--------CCACCCCCACCTTTCAAAAATCAAC-GAGCCCTCCCAGAACCA---CC +s fr1.chrUn 320906296 126 + 349519338 TCAT----ATATATT---AAACATTA-----------ATATAATGCATAACTAAGACATAGTACTATATATTCACCTATAATTCCTATAA---------------------------CCCAT-------------AAAGCAAGTACAGAAA-----ACTAA-------------AAATGCTAAA--AGCATGACTAGAAAAA---TC + +a score=-2739.0 +s hg17.chrM 16262 5 + 16571 --CCTCA +s panTro1.chr11 95343384 5 - 123086034 --CAACA +s mm5.chrM 15538 5 + 16299 --CAACA +s rn3.chr7 48860817 5 - 143082968 --TATCA +s galGal2.chrM 16414 4 + 16775 --CACC- +s fr1.chrUn 320906422 5 + 349519338 CCTAA-- + +a score=0.0 +s hg17.chrM 16267 6 + 16571 CCCACT + +a score=-2037.0 +s hg17.chrM 16267 6 + 16571 CCCACT +s panTro1.chr11 95343389 3 - 123086034 C---CT +s mm5.chrM 15543 1 + 16299 T----- +s rn3.chr7 48860822 6 - 143082968 TCCAAT + +a score=-14864.0 +s hg17.chrM 16273 24 + 16571 AGGATACCAACAA---ACCTACCCACC- +s panTro1.chr11 95343392 24 - 123086034 AGAATATCAACAG---ACCTGCACATC- +s mm5.chrM 15544 17 + 16299 ---AAATCAATA-------TATATACC- +s rn3.chr7 48860828 12 - 143082968 GTCATATCAATG---------------- +s canFam1.chr38 16296834 26 - 26492144 TGAATATCTACAGC-AAAATTAACATG- +s galGal2.chrM 16418 24 + 16775 ---AAGACAAAACCTAGCCCATACCCC- +s fr1.chrUn 320906427 24 + 349519338 AAATTGTTGAAG----AACTGAACGAAA + +a score=-1707.0 +s hg17.chrM 16297 28 + 16571 CTTAACAG---------TACATAGTAC-------ATAAAGTCAT +s panTro1.chr11 95343416 29 - 123086034 CTTAACAG--------ATACATAGCAC-------ATACAGTCAT +s mm5.chrM 15561 44 + 16299 ATGAATATTATCTTAAACACATTAAACTAATGTTATAAGGACAT +s rn3.chr7 48860840 18 - 143082968 ----------------ATACATAG----------ACATATCTAT +s canFam1.chr38 16296860 28 - 26492144 ATTAATAT---------TACATAGCAC-------ATAATATTAT +s fr1.chrUn 320906451 24 + 349519338 ------------TTTAAGACCGAACA--------ATAAACTCAT + +a score=831.0 +s hg17.chrM 16325 9 + 16571 -------TTACCGTAC +s panTro1.chr11 95343445 9 - 123086034 -------TTATCGTAC +s mm5.chrM 15605 16 + 16299 ATCTGTGTTATCTGAC +s rn3.chr7 48860858 10 - 143082968 ------GTTATTTTAC +s canFam1.chr38 16296888 9 - 26492144 -------TGGTTGGAT + +a score=7636.0 +s hg17.chrM 16334 51 + 16571 ATAGCACATTACAGTCA-AATCCCTTCTCGTCCCCATG------------GATGACCCCCCTCA +s panTro1.chrUn_random 225547893 51 - 240967748 ATAGCGCATTACAGTCA-AATCCCTCCTTGCCCCCACG------------GATGCCCCCCCTCA +s mm5.chrM 15621 51 + 16299 ATA-CACCATACAGTCATAAACTCTTCTCTTCCATATG------------ACTATCCCCTTCCC +s rn3.chr7 48860868 51 - 143082968 ATAAACCGTTCTAGTCA-AATTACTTTTTTGGCATATA------------GCTATCTCCTTCTC +s canFam1.chr38 16296897 62 - 26492144 ATACCCCATTA-AGTCA-AATTATTACCAGACAACATGCCTATCATAACTGATAACCACATTTA + +a score=1592.0 +s hg17.chrM 16385 18 + 16571 GATAGGGGTCCCTTGACC +s panTro1.chrUn_random 225547944 18 - 240967748 GATAGGAATCCCTTAATC +s mm5.chrM 15672 17 + 16299 CATTTG-GTCTATTAATC +s rn3.chr7 48860919 16 - 143082968 AATTGG--TCTGTTCATC +s canFam1.chrM 15671 15 + 16727 AATAAGGG---CTTAATC + +a score=10758.0 +s hg17.chrM 16403 30 + 16571 ACCATCCTCCGTGAAATCAATATCCC------GCAC +s panTro1.chr14 78287170 35 + 97804244 ACCAACCTCCAAGAAATCATCATCCCTCTGGGGCA- +s mm5.chrM 15690 30 + 16299 ACCATCCTCCGTGAAACCAACAACCC------GCCC +s rn3.chr7 48860936 30 - 143082968 ACCATCCTCTGAGAAACCAACAACCC------AACA +s canFam1.chrM 15686 30 + 16727 ACCATGCCTCGAGAAACCATCAACCC------TTGC + +a score=53286.0 +s hg17.chrM 16433 96 + 16571 AAG-AGTGCTACTCTCCTCGCTCCGGGCCCAT-AACACTTGGGGGTAGCTAAAGTG-AACTGTATCCGACATCTGGTTCCTACTTCAGGGCCATAAA---GC +s panTro1.chr14 78287205 92 + 97804244 ------TGTTACTCTCCTCACTCTGGGCCCAT-AACACTTGGGAGTGACTATACTGAAACTATACCTGGCATCTGGTTCTTACCTCAGGGCCAtgaa---ac +s mm5.chrM 15720 97 + 16299 ACC-AATGCCCCTCTTCTCGCTCCGGGCCCAT-TAAACTTGGGGGTAGCTAAACTGAAACTTTATCAGACATCTGGTTCTTACTTCAGGGCCATCAA---AT +s rn3.chr7 48860966 98 - 143082968 ATC-TATGCCCATCTTCCTGCTCTAGGCCCATCTTGACTTGGGGGTAGCTAATATGAGACTTTATCAGACATCTGCTTTTTACTCTAGGGCCATTAA---AT +s canFam1.chrM 15716 102 + 16727 TCGTAATGTCCCTCTTCTCGCTCCGGGCCCATACTAACGTGGGGGTTACTATCATGAAACTATACCTGGCATCTGGTTCTTACTTCAGGGCCATAACCTTAT +s fr1.chrUn 320906557 96 + 349519338 ATG-CATATTATTATTGAAGGTGAGGGACAAT-AACAGTGGGGGTTTCACTAAATG-AACTATTCCTGGCATTTGGTTCCTACTTCAGGGCCATTAA---TC + +a score=8581.0 +s hg17.chrM 16529 36 + 16571 -----------CTAA-ATAGCCCACACGTTCCCCTTAAATAAGACATC +s panTro1.chr14 78287297 48 + 97804244 taagattgaaactaagattgCCCACACATTTCACTTAAATAAGACGTC +s mm5.chrM 15817 37 + 16299 -----------GCGTTATCGCCCATACGTTCCCCTTAAATAAGACATC +s rn3.chr7 48861064 36 - 143082968 -----------GCATTATCAACCATGTGTTCC-CTCAAATAAAACATC +s canFam1.chrM 15818 37 + 16727 -----------TTACTCCAATCCTACTAATTCTCGCAAATGGGACATC + +a score=2403.0 +s hg17.chrM 16565 6 + 16571 ACGATG +s mm5.chrM 15854 6 + 16299 TCGATG +s rn3.chr7 48861100 6 - 143082968 TCAATG +s canFam1.chrM 15855 6 + 16727 TCGATG +