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view test-data/chrM.maf @ 0:d38f317fa9d4 draft default tip
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| author | dave |
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| date | Fri, 10 Jul 2020 16:05:40 -0400 |
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##maf version=1 scoring=multiz.v7 # multiz.v7 R=10 M=0 /cluster/bluearc/hg17/multiz.2004-07-13/danRer1/chrM.maf /cluster/bluearc/hg17/multiz.2004-07-13/panTro1mm5rn3canFam1galGal2fr1/chrM.maf - # multiz.v7 R=10 M=0 /cluster/bluearc/hg17/multiz.2004-07-13/fr1/chrM.maf /cluster/bluearc/hg17/multiz.2004-07-13/panTro1mm5rn3canFam1galGal2/chrM.maf - # multiz.v7 R=10 M=0 /cluster/bluearc/hg17/multiz.2004-07-13/galGal2/chrM.maf /cluster/bluearc/hg17/multiz.2004-07-13/panTro1mm5rn3canFam1/chrM.maf - # multiz.v7 R=10 M=0 /cluster/bluearc/hg17/multiz.2004-07-13/canFam1/chrM.maf /cluster/bluearc/hg17/multiz.2004-07-13/panTro1mm5rn3/chrM.maf - # multiz.v7 R=10 M=0 /cluster/bluearc/hg17/multiz.2004-07-13/rn3/chrM.maf /cluster/bluearc/hg17/multiz.2004-07-13/panTro1mm5/chrM.maf - # multiz.v7 R=10 M=0 /cluster/bluearc/hg17/multiz.2004-07-13/mm5/chrM.maf /cluster/bluearc/hg17/multiz.2004-07-13/panTro1/chrM.maf - a score=373.0 s hg17.chrM 10 4 + 16571 CTAT s mm5.chrUn_random 29351899 4 + 102265694 CTAT a score=8367.0 s hg17.chrM 14 46 + 16571 CACCCTATTAACCACTCACGGGAG--CTCTCCATGCATTTGGTATTTT s panTro1.chr13 3552480 47 + 134309081 CACCCTATTAACCAGTCACGGGAGGACTGT-CATGCATTTGGTATTTT s mm5.chrUn_random 29351903 47 + 102265694 CACTCTATTAACCAGTCATGGGAGCATGAT-CATGAATTTGGTATTTT a score=11228.0 s hg17.chrM 60 133 + 16571 ---CGTCTGGGGGGTGTGCACGCGAT-----AGCATTGCGAGACGCTGGAGCC-----GGAGCACCCTATGTCGCAGTATCTGTCTTTGATTCCTGCCTCATTCTATTATTTA--TCGCACCTACGTTCAATATTACAGGCGAACATA s panTro1.chr6 29890008 133 + 161576975 ---CGTCTGGGGGGTGTGCACGCGAT-----AGCATTGCGAAACGCTGGCCCC-----GGAGCACCCTATGTCGCAGTATCTGTCTTTGATTCCTGCCCCATTCCATTATTTA--TCGCACCTACGTTCAATATTACGAGCGAGCATG s mm5.chrUn_random 29351950 137 + 102265694 TAACTTTTAGGA-------ATGCTATCACTCACCATTGCAGAAGGCCTGGTCCCCTCTGAATCAGC---TGTAGACGAACTCGGATTGGATTTCTGCCAAA-TCAATTGTAGAAGCTGAGCTTATATTGAATATTCTAACCTCGCATA a score=-296.0 s hg17.chrM 193 11 + 16571 CCTACTAAAGT s panTro1.chr6 29890141 11 + 161576975 TTAACCAAGGT s mm5.chrUn_random 29352087 11 + 102265694 ACAACCATAAG s galGal2.chrM 851 11 + 16775 CCCGGTAAATG a score=311.0 s hg17.chrM 204 2 + 16571 GT s mm5.chrUn_random 29352098 2 + 102265694 AT s galGal2.chrM 862 2 + 16775 GT a score=9848.0 s hg17.chrM 206 33 + 16571 GTTAATTAATTAATGCTTGTAGGACATAATAAT s panTro1.chr13 3552675 33 + 134309081 GTTAATTAATTCATGCTTGAAAGACATAACAAT s mm5.chrUn_random 29352100 29 + 102265694 ----GTTAATTCATGCTTGAAGGACATAATAAT s galGal2.chrM 864 33 + 16775 GCTATTTAGTGAATGCTTGTCGGACATATTTTT a score=5.0 s hg17.chrM 239 2 + 16571 AA s panTro1.chr6 29890187 2 + 161576975 AG s galGal2.chrM 897 2 + 16775 AT a score=-369.0 s hg17.chrM 239 2 + 16571 AA- s galGal2.chrM 897 2 + 16775 -AT a score=1146.0 s hg17.chrM 241 2 + 16571 CA s panTro1.chr6 29890189 2 + 161576975 CA s mm5.chrUn_random 29352129 2 + 102265694 CA s galGal2.chrM 899 2 + 16775 CA a score=-73.0 s hg17.chrM 243 16 + 16571 ATTGA-ATGTCTGCACA s mm5.chrUn_random 29352131 17 + 102265694 ATAGACACATATGCACA s galGal2.chrM 901 9 + 16775 --------ATTTTCACT a score=-48.0 s hg17.chrM 259 14 + 16571 ---GCCGCTTTCCACAC s panTro1.chr6 29890206 14 + 161576975 ---GCCGCTTTTCACAC s mm5.chrUn_random 29352148 7 + 102265694 ----------ATCACCT s galGal2.chrM 910 17 + 16775 TCCTCTATTTTCTTCAC a score=-3812.0 s hg17.chrM 273 28 + 16571 AGACATCATAACAAAAAA----------TTTCCACCAA s panTro1.chr6 29890220 27 + 161576975 CAACATCATAACAAAAA-----------TTTCCGCAAA s mm5.chrUn_random 29352155 38 + 102265694 ACCCTTATTTTCAAGAACTATTTATGATTTAACTCACA s canFam1.chrX 31796412 23 - 126913094 AGACATTATATTAACTAA---------------ACCAA s galGal2.chrM 927 22 + 16775 ------AAAACTAGGAAA----------TTCACCACAA a score=1590.0 s hg17.chrM 301 35 + 16571 ACCCCCCCCTCCCCCCGCTTCTGGCCACAGCAC--------TT s panTro1.chr6 29890247 33 + 161576975 GCCCCCC--TCCCCCCACTTCTGGCCACAGCAC--------TC s mm5.chrUn_random 29352193 39 + 102265694 ACCCCCC----CCAACATCTCTGACTTTATCATGGACATAGGT s canFam1.chrX 31796435 33 - 126913094 ACCCCCTCTACCCCCCA--TAAACTTATATTAT--------TT a score=-6005.0 s hg17.chrM 336 91 + 16571 A-AACACATCT--------------CTGCCAAACCCCAAAAA-CAAAGAAC-----CCTA---ACAC-CAGCCT-----AACCAGATTTC--AAATTTTAT---CTTTAGGC-GGTATGCACTTTTA s panTro1.chr6 29890280 92 + 161576975 A-AACACATCT--------------CTGCCAAACCCCAAAAAATAAAGAAC-----CCTA---ACAT-CAGCCC-----AACCAGATCTC--AAATTTCAT---CTTTTGGC-GGTATGCACTTTTA s mm5.chrUn_random 29352232 86 + 102265694 A-AATATGCAC--------------TTGTGAAAACCCCAAGA-----GA--------CTA---AAATGCAACCC-----AGTCAGAGCCCAAAAAAGTTAT---ATTTTAAT-CATGAATA-TCCCA s canFam1.chrX 31796468 112 - 126913094 ACAATATACCTATTTGTTTTGTGTCCCGCCAAACCCCAAAAA--CAGGA--------CTAAGTAAATGTAGCACTCATAAGCCATGTCT---AAATTTCATACGATTATAAC-TCTAGTTA-ATTTA s galGal2.chrM 988 96 + 16775 A-AAAACATTT--------------TTTAAAAAACTAAATTACATACAAACTACCGCATA---AAAT-CCCTCA-----AACTATACA----AACGTTTAT---CGTATAATATATATACATTATTG a score=583.0 s hg17.chrM 427 38 + 16571 ACAGTCACCCCCCAACTAACACATTATTTTCCC-----CTCCC s panTro1.chr6 29890372 35 + 161576975 ACAGTCACCCCTCAACTAACATATCAT---CCC-----CCTCA s mm5.chrUn_random 29352318 43 + 102265694 ACAACTACCCCTTGATTGATATAAAATTTTCCCAAAAATCTCA s canFam1.chrX 31796580 15 - 126913094 ACA-----------------AAATAAT-----------TTCCT a score=-3742.0 s hg17.chrM 465 34 + 16571 A-----CTCCCATA-----CTACTAATCTC---ATCAATACAACCCC---- s panTro1.chr6 29890407 34 + 161576975 A-----CTCCTATT-----CTACTAGTCCC---ACCAATGCAACCCC---- s mm5.chrUn_random 29352361 44 + 102265694 AGATATCTACCAAATAAGCCTCCATATCTA---ATAAATACAGTAAC---- s canFam1.chrX 31796595 37 - 126913094 A-----CGCCTAAA-----TCTGCAATCTATCTATAGATAGGACTTC---- s galGal2.chrM 1107 38 + 16775 A-----CTCCACTA-----CCAAAACCATC---ATTAAAACAAAAATTTAC a score=-3187.0 s hg17.chrM 499 23 + 16571 C----GCCCATCCTA--CCCAGCACACAC s panTro1.chr6 29890441 24 + 161576975 C---TACCCACCCTA--CCCAGCACAGAC s mm5.chrUn_random 29352405 23 + 102265694 TAGATTTTCACCCTAATACTAGT------ s canFam1.chrX 93613525 23 + 126913094 ----CACCCCTTCCA--TTCAACTCACAA s galGal2.chrM 1145 23 + 16775 ----ATGCCACTTAA--CTCCCCTCACAA a score=-6370.0 s hg17.chrM 522 50 + 16571 ACACCGCTGC-----TAACCCC------------------------ATACCCCGAACCAACCAAACCCCA-------AAGACACCC-- s panTro1.chr9 125919315 50 - 136640551 ACACCGCTGC-----TAGCCCC------------------------ATACCCCGAGCCAACCAAACCCCA-------AAGACACCC-- s mm5.chrUn_random 29352428 83 + 102265694 ATAATGCCTTGAATATAACCCTTTGAAAGCACTACCCTAGTGCATGACACTCTAAATCAACTATTCCCTAA---TATAAGAAACCC-- s canFam1.chrX 93613548 52 + 126913094 ----------AAATCCAATCCC------------------------ACATTCTCATCAACATAATATATAACACCATAAAACACCT-- s galGal2.chrM 1168 45 + 16775 --ACAATCGT-----TATTT--------------------------ATATTGTTAATTAGCAAACAC----------AAAACCCGCCT a score=345.0 s hg17.chrM 572 3 + 16571 CCC s panTro1.chr9 125919365 3 - 136640551 CAT s mm5.chrUn_random 29352511 3 + 102265694 CCT s galGal2.chrM 1213 3 + 16775 TCT a score=91.0 s hg17.chrM 575 1 + 16571 A s galGal2.chrM 1216 1 + 16775 A a score=-31.0 s hg17.chrM 575 1 + 16571 A s mm5.chrUn_random 29352629 1 + 102265694 G a score=91.0 s hg17.chrM 575 1 + 16571 A s panTro1.chr9 125919368 1 - 136640551 A a score=531.0 s hg17.chrM 576 2 + 16571 CA s panTro1.chr9 31868387 2 - 136640551 CA s mm5.chrUn_random 29352630 2 + 102265694 CA s galGal2.chrM 1217 2 + 16775 CC a score=1627.0 s hg17.chrM 578 4 + 16571 GTTT s panTro1.chr9 31868389 4 - 136640551 GTTA s mm5.chrUn_random 29352632 4 + 102265694 GTTA s galGal2.chrM 1219 4 + 16775 ACTA s fr1.chrUn 320907090 4 + 349519338 GCTA a score=11543.0 s hg17.chrM 582 12 + 16571 ATGTAGCTTACC s panTro1.chr9 31868393 12 - 136640551 ATGTAGCTTAAT s mm5.chrM 4 12 + 16299 ATGTAGCTTAAT s canFam1.chrM 4 12 + 16727 ATGTAGCTTAAT s galGal2.chrM 1231 12 + 16775 CCATAGCTTAAC s fr1.chrUn 320907094 12 + 349519338 GCGTAGCTTAAC a score=-20.0 s hg17.chrM 594 5 + 16571 TCCTC s fr1.chrUn 320907106 1 + 349519338 ----C a score=-3855.0 s hg17.chrM 594 4 + 16571 TCCT s panTro1.chr9 31868405 4 - 136640551 TATT s mm5.chrM 16 2 + 16299 AA-- s canFam1.chrM 16 4 + 16727 TAAT s galGal2.chrM 1243 3 + 16775 CCA- a score=0.0 s hg17.chrM 598 1 + 16571 C a score=38.0 s hg17.chrM 598 1 + 16571 C s panTro1.chr9 31868409 1 - 136640551 T s mm5.chrM 18 1 + 16299 C a score=100.0 s hg17.chrM 598 1 + 16571 C s galGal2.chrM 1246 1 + 16775 C a score=34712.0 s hg17.chrM 599 43 + 16571 AAAGCAATACACTGAAAATGTTTAGACGGGCT----CACATCACCCC s panTro1.chr9 31868410 43 - 136640551 AAAGCAAGACACTGAAAATGTCTAGATGGGTT--TGCACA--ACCCC s mm5.chrM 19 42 + 16299 AAAGCAAAGCACTGAAAATGCTTAGATGGATA--ATTGTA--TCCC- s rn3.chr7 48861581 43 - 143082968 AAAGCACAGCACTGAAAATGTTTAGATGAACT-TTTAACA--TCCC- s canFam1.chrM 20 42 + 16727 AAAGCAAGGCACTGAAAATGCCAAGATGAGTC---GCACG--ACTCC s galGal2.chrM 1247 43 + 16775 AAAGCATGGCACTGAAGATGCCAAGATGGTACCTACTATA--CCT-- s fr1.chrUn 320907107 44 + 349519338 AAAGCAGAGTACTGAAGATGCTAAGATGGGCCCTGAAAAG--TCCC- s danRer1.chrM 968 44 + 16596 AAAGCACGGCACTGAAGCTGCCAAGATGGGCCCTAATAAG--CTCC- a score=8181.0 s hg17.chrM 642 9 + 16571 ATAAACAAA s panTro1.chr3 35462429 9 - 209662276 ataaacaaa s mm5.chrM 61 9 + 16299 ATAAACACA s rn3.chr7 48861624 9 - 143082968 ATAAAAAGG s canFam1.chrM 62 9 + 16727 ATAAACATA s galGal2.chrM 1290 9 + 16775 GTGGGCAAA s fr1.chrUn 320907151 9 + 349519338 GCAGGCACA s danRer1.chrM 1012 9 + 16596 GCATGCACA a score=-123.0 s hg17.chrM 651 1 + 16571 T s danRer1.chrM 1021 1 + 16596 A a score=0.0 s hg17.chrM 651 1 + 16571 T a score=-310.0 s hg17.chrM 651 1 + 16571 T s mm5.chrM 70 1 + 16299 A s rn3.chr7 48861633 1 - 143082968 T s canFam1.chrM 71 1 + 16727 A a score=-123.0 s hg17.chrM 651 1 + 16571 T s fr1.chrUn 320907160 1 + 349519338 A a score=58671.0 s hg17.chrM 652 91 + 16571 AGGTTTGGTCCTAGCCTT-TCTATTAGCTCTTAGTAAGATTACACATGCAAGCATCCCCGTTCCAGTG------AGTTCACCCTCTAAA--------TCACCACGA----- s panTro1.chr3 35462438 80 - 209662276 ----------ctgGCCTT-TTCATTAGCTCTTAGTAGGATTACACATGCAAGCATCCCCACCCCAGTGAAAATGA------CCTCTGGA--------TCACCG-GC----- s mm5.chrM 71 88 + 16299 AGGTTTGGTCCTGGCCTT-ATAATTAATTAGAGGTAAAATTACACATGCAAACCTCCATAGACCGGTGTAAA--A------TCCCTTAA--------ACATTT-AC----- s rn3.chr18 23098529 91 - 87338544 AGGTTTGGTTCTGACTTTGGTGATTATTTTGAGGTAGATTTACATATGCAAA-ATCACTAAACCATTGTGAA--A------TCCCTTAAAA-----TTCACAT-GG----- s canFam1.chrM 72 90 + 16727 AGGTTTGGTCCTAGCCTT-CCTATTAGTTTTTAGTAGACTTACACATGCAAGCCTCCACGCCCCAGTGAGAA--T------GCCCTTAAAA------TCACCA-GT----- s galGal2.chrM 1299 94 + 16775 AGACTTAGTCCTAACCTT-TCTATTGGTTTTTGCTAGACATATACATGCAAGTATCCGCATCCCAGTGAAAA--T------GCCCCCAAACCTTTCTTCCCAA-------- s fr1.chrUn 320907161 88 + 349519338 AAGCTTGGTCCTGACTTT-ACTAACAACTCTGATCAAACTTACACATGCAAGTATCCGCATCCCAGTGAAAA--T------GCCCCCCG--------CCCCCC-GT----- s danRer1.chrM 1022 93 + 16596 AGGCATGGTCCCGACCTT-TTGATCAGCTTTTACCTAATTTACACATGCAAGTCTCCGCACCCCTGTGAATA--C------GCCCTCAA--------TCCCCA-AACCTGG a score=211943.0 s hg17.chrM 743 295 + 16571 TCAA-----AAGGGACAAG--CATCAAGCACGCAGCAATGCAGCTCAAAACGCTTAGCCT-AGCCACACCCCCACGGG-AAACAGCAGTGATTAACCTTTAGCAATAAACGAAAGTTTAACTAAGCTATACTAAC-CCCAGGGTTGGTCAATTTCGTGCCAGCCACCGCGGTCACACGATTAACCCAAGTCAATAG-AAGC-CGGCGTAAAGAGTGT----TTTAGATC-ACCCCCTCCCCAATAAAGCTAAAACTCACCTGAGTTGTAAAAAAC-TCCAGTT--GACACAAAATAGACT-ACGAAAGTGGCTT--TA s panTro1.chr3 35462518 292 - 209662276 TCAA-----AAGGAGCAGG--TATCAAGCATGCACGAATGCAGCTCAAAACACTTTGCTC-AACCATACCCCCAAGGG-AAACAGCAGTGATAAATCCTTAGTAATAAACGAAAGTTTGACCAAGCCATACTAATATTTAGGGTTGGTTAATTTTGTGCCAGCCACTGCGGCCATAAGATTAACTCGAGCTAATAG-AACT-TGGCGTAAAGAGTGT----TTAAGGTCTACCTTC-----AATAAAGCTAAGCTCCATCTAAGCTGTAAAAAAC-TCCAGCT--GACATAAAATATACT-ATGAAAGTGACTT--TA s mm5.chrM 159 295 + 16299 TTAAAATTTAAGGAGAGGG--TATCAAGCA--CATTAAAATAGCTTAAGACACCTTGCCT-AGCCACACCCCCACGGG-ACTCAGCAGTGATAAATATTAAGCAATAAACGAAAGTTTGACTAAGTTATACCT---CTTAGGGTTGGTAAATTTCGTGCCAGCCACCGCGGTCATACGATTAACCCAAACTAATTA-TCTT-CGGCGTAAAACGTGTCAACTATAAATAAATA--------AATAGAATTAAAATCCAACTTATATGTGAAAATT-CATTGTTAGGACCTAAACTCAATA-ACGAAAGTAATTC--TA s rn3.chr7 48861782 267 - 143082968 TTAA-----AAGGGGGGAGATTGTCTAGCATACAGTAA-GTAGCTTCAGAAACCTTGCCT-AGTTTTATCCCTATGGG-ACTCAGC----ATCAGGACTTTG-----------ACTTTGAGTAAGTTATACCT---TTTAGAATTGGTAAACTTCTTGACAGCC-CTGCAGTCATA-GACAAACTCAACTT---------T-TTACATAAAACATGT----TCAAGATATAAACTTT----CATGGAAGTAAAAGCAAATTTATATGTGAAAATT-CATAGTT--GGTTTTAAACCCACTAATGAAAATGATTC--TA s canFam1.chrM 164 292 + 16727 TCTA-----AAGGAGCAGG--TATCAAGCACACTCTTAAGTAGCTCATAACACCTTGCTA-AGCCACACCCCCACGGG-ATACAGCAGTGATAAAAATTAAGCCATAAACGAAAGTTTGACTAAGCCATACTA---AATAGGGTTGGTAAATTTCGTGCCAGCCACCGCGGTCATACGATTAACCCAAACTAATAG-GCCTACGGCGTAAAGCGTGT----TCAAGATACTTTTAC-----ACTAAAGTTAAAACTTAACTAAGCCGTAAAAAGC-TACAGTT--ATCATAAAATAAACC-ACGAAAGTGACTTTATA s galGal2.chrM 1393 296 + 16775 GCAA-----AAGGAGCAGG--TATCAGGCACACTCAGCAGTAGCCCAAGACGCCTTGCTTAAGCCACACCCCCACGGGTACTCAGCAGTAATTAACCTTAAGCAATAAGTGTAAACTTGACTTAGCCATAGCAA--CCCAGGGTTGGTAAATCTTGTGCCAGCCACCGCGGTCATACAAGAAACCCAAATCAATAGCTACC-CGGCGTAAAGAGTGG----CCACATGTTATCTGCACCA-GCTAAGATTAAAATGCAACCAAGCTGTCATAAGC-CTAAGATC-CACCTAAACCCAACC---CAAATCCATCT--TA s fr1.chrUn 320907252 296 + 349519338 ----GAAATAGGGAGTTGG--TATCAGGCACACAAATTTGTAGCCCATGACACCTAGCTT-TGCCACGCCCCCAAGGGAATTCAGCAGTGATAAACATTAAGCCATAAGTGAAAACTTGACTTAGTCATGATC---TAAAGAGTCGGTAAAACTCGTGCCAGCCACCGCGGTTATACGAGAGACCCAAGTTGTTAG-CCAA-CGGCGTAAAGGGTGG----TTAGAACTAAAAACAACAA-ACTGAGACCGAACACCTTCAAGGCTGTTATACGC-TTCCGAA--GCAACGAAGAACAATAACGAAAGTAGCCT--CA s danRer1.chrM 1115 291 + 16596 -----GGACGAGGAGCAGG--TATCAGGCACAAAATTT-TTAGCCCAAGACGCCTAGCCA-AGCCACACCCCCAAGGGGATCCAGCAGTGACAAACATTAAGCTATAAGTGAAAACTTGACTCAGTTAAGGTA---AAGAGAGCCGGTAAAACTCGTGCCAGCAACCGCGGTTAAACGAGAGGCTCTAGTTGATAT-ACTA-CGGCGTAAAGGGTGG----TTAAGGAACAATGTAA----AATAAAGCCAAACGGCCCTTTAACTGTTATACGCTTTTAGAT--GCTAGAGGCCCAAAC-ACGAAAGTAGCTT--TA a score=156115.0 s hg17.chrM 1038 167 + 16571 A----------CATATCTGAACACACAATAGCTAAGACCCAAACTGGGATTAGATACCCCACTATGCTTAGCCCTAAACCTCAACAGTTAAA-TCAACAAAACTGCTCGCCAGAACACTACGAG--CCACAGCTTAAAACTCAAAGGACCTGGCGGTGCTTCATATCCCTCTAGAGGAGC s panTro1.chr3 35462810 166 - 209662276 A----------TAT-CCTGAAGACACAATAGCTAAAATCCAAACTTGGATTAGATACACCACTATGCTTAGCCCTAAACTCTAATAGTTATA-TTAACAAAACCATTTCCTAGAGTACCACAAG--CAACAGCTTAAAATTCAAAGGACTTGGCGGTGCTTTATATCCCTCTAAAGGAGC s mm5.chrM 454 168 + 16299 G---------TCAT-TTATAATACACGACAGCTAAGACCCAAACTGGGATTAGATACCCCACTATGCTTAGCCATAAACCTAAATAATTAAATTTAACAAAACTATTTGCCAGAGAACTACTAG--CCATAGCTTAAAACTCAAAGGACTTGGCGGTACTTTATATCCATCTAGAGGAGC s rn3.chr7 48862049 149 - 143082968 A----------TTG-ACTCAATACATGGCAGTTAAGATATAAATTAGTACTAAATACCTTACTATGC---------------AGTAATTTAG--CAACAAAA-TAAATGTGGGAGAGTTATTAG--CCACAGCTTAATACTCAAAGGACTTGGAGGGACTTTATATCCACCTAAAGCAGC s canFam1.chrM 456 165 + 16727 A----------TAA-TCTGACTACACGATAGCTAAGACCCAAACTGGGATTAGATACCCCACTATGCTTAGCCCTAAACATAGATAATTTTA--CAACAAAATAATTCGCCAGAGGACTACTAG--CAATAGCTTAAAACTCAAAGGACTTGGCGGTGCTTTATATCCCTCTAGAGGAGC s galGal2.chrM 1689 178 + 16775 GCCTCAACGATTAA-TTTTAACCCACGAAAGCTAGGACCCAAACTGGGATTAGATACCCCACTATGCCTAGCCCTAAATCTAGATACCTCCC-ATCACACATGTATCCGCCTGAGAACTACGAGCACAAACGCTTAAAACTCTAAGGACTTGGCGGTGCCCCAAACCCACCTAGAGGAGC s danRer1.chrM 1406 169 + 16596 -----AATTAATTA-CCTGAACCCACGAAAGCTAAGAAACAAACTGGGATTAGATACCCCACTATGCTTAGCCATAAACAAAGACATTTAAT---CACAACAATGTTCGCCCGGACACTACAAG--CATAAGCTTAAAACCCAAAGGACCTGACGGTGCCTTAGATCCCCCTAGAGGAGC a score=248485.0 s hg17.chrM 1205 298 + 16571 CTGTTCTGTAATCGATAAACCCCGATCAACCTCACCACCTCTTGCTC----AGCCTATATACCGCCATCTTCAGCAAACC-CTGATGAAGGCTACAAAGTAAGCGCAAGTA-CCCACGTAAAGACGTTAGGTCAAGGTGTAGCCCATGAGGTGGCAAGAAATGGGCTACATTTTCTAC-CCCAGAAAA-C---T--ACGATAGCCC-TTATGAAACTTAAGGGTCGAAGGTGGATTTAGCAGTAAACTGAGAGTAGA------GTGCTTAGTTGAACAGGGCCCTG--------------------------------------AAGCGCGTACACACCGCCCGTCACCCTCCTCA s panTro1.chr3 35462976 302 - 209662276 CTGTTCTATAATCGATAAACCCTGGTGCTCCTCACCACCTCTTGCCC--CCAGCGTATATACCGCCATCTTCAGCAAACC-CTAA-AAAGGTCACAAAGTAAGTACAAGTA-CACACATAAAAACATTAGGTCAAGGTGTAGCCCATGAGGTGGCACAAAATTGGCTACATTTTCTATGTCCAGAAAATC---T-CACAACAACCT-TTAGGAAATCTAAGGGCTCAAGGAGGATTTAGCAGTAAACCAAGAGCAGA------GTGCTTGGTTGAATAAGGCCATG--------------------------------------AAGCATGCACACACCGCCCGTCACCCTCCTCA s mm5.chrM 622 302 + 16299 CTGTTCTATAATCGATAAACCCCGCTCTACCTCACCATCTCTTGCTAATTCAGCCTATATACCGCCATCTTCAGCAAACC-CTAA-AAAGGTATTAAAGTAAGCAAAAGAATCAAACATAAAAACGTTAGGTCAAGGTGTAGCCAATGAAATGGGAAGAAATGGGCTACATTTTCTTATAAAAGAACA-T---T--ACTATACCCT-TTATGAAACTAAAGGACT-AAGGAGGATTTAGTAGTAAATTAAGAATAGA------GAGCTTAATTGAATTGAGCAATG--------------------------------------AAGTACGCACACACCGCCCGTCACCCTCCTCA s rn3.chr7 48862416 326 - 143082968 CTGTT-TATAACCCGTAAACCCCATGTTAACTTACCATC---TGCTAATTTAGCCTATGTACTGATGTCTTCAGTAAACA-CTAA-AACGGAATTGCAGTAAGCAAATGAA-CAATTATAAAAATGTTAGGTTGAGGTGTAGCCTATGGGATGGAAAGTAATAGGCTATATTTTCTCA-ACAAGAACA-CACAT--ATTATTATCT-TTATGAAACTTAAGGAACCAAGGAGGATT------------AAGAATAGA------GAACCTAATTGAATTGAGCAATGACATACACACACACACACACACACACACACACACACACACACACACACACACAGCCTGTCACCTTCCTCA s canFam1.chrM 621 303 + 16727 CTGTTCTATAATCGATAAACCCCGATAAACCTCACCACCTTTCGCTAATTCAGTCTATATACCGCCATCTTCAGCAAACC-CTCA-AAAGGTAGAACAGTAAGCACAATCATTTTACATAAAAAAGTTAGGTCAAGGTGTAACTTATGAGGTGGGAAGAAATGGGCTACATTTTCTAC-CCAAGAACA-T---TTCACGAATGTTT-TTATGAAA-TTAAAAACTGAAGGAGGATTTAGTAGTAAATTAAGAATAGA------GAGCTTAATTGAATAGGGCCATG--------------------------------------AAGCACGCACACACCGCCCGTCACCCTCCTCA s galGal2.chrM 1867 308 + 16775 CTGTTCTATAATCGATAATCCACGATTCACCCAACCACCCCTTGCCAGCACAGCCTACATACCGCCGTCGCCAGCCCACCTCTAATGAAAGAACAACAGTGAGCTCAATAGCCCCTCGCTAATAAGACAGGTCAAGGTATAGCCTATGGGGTGGGA-GAAATGGGCTACATTTTCTAA-CATAGAACA-A------ACGAAAAAGG-ATGTGAAACCCGCCCTTAGAAGGAGGATTTAGCAGTAAAGTGAGATCATACCCCCTAAGCTCACTTTAAGACGGCTCTG--------------------------------------AGGCACGTACATACCGCCCGTCACCCTCTTCA s danRer1.chrM 1575 299 + 16596 CTGTTCTAGAACCGATTATCCCCGTTAAACCTCACCATTTCTAGCAAAATCAGCCTATATACCACCGTCGCCAGCTTACC-CTGT-GAAGGAATAACAGTAAGCAAGATGGGCATAGCCCAGAAAGTCAGGTCGAGGTGTAGCACATGAAATGGGAAGAAATGGGCTACACTTTCTAC-CCCAGAATA-T------ACGAAAATGTAACATGAAAC--AATACTTGAAGGAGGATTTAGCAGTAAAAGAGAAGCAGA------GTGTCTCTTTGAACCCGGCTCTA--------------------------------------AGGCGCGTACACACCGCCCGTCACTCCCTCC- a score=1049.0 s hg17.chrM 1503 2 + 16571 AG s panTro1.chr3 35463278 2 - 209662276 AA s mm5.chrM 924 2 + 16299 AA s rn3.chr7 48862742 2 - 143082968 AA s canFam1.chrM 924 2 + 16727 AG s danRer1.chrM 1874 2 + 16596 GG a score=69.0 s hg17.chrM 1503 2 + 16571 AG s danRer1.chrM 1874 2 + 16596 GG a score=273.0 s hg17.chrM 1505 1 + 16571 T s panTro1.chr3 35463280 1 - 209662276 T s mm5.chrM 926 1 + 16299 T a score=-1040.0 s hg17.chrM 1505 2 + 16571 -TA s canFam1.chrM 926 2 + 16727 -TA s galGal2.chrM 2175 2 + 16775 -CA s danRer1.chrM 1876 2 + 16596 TC- a score=-196.0 s hg17.chrM 1506 5 + 16571 ATACT s galGal2.chrM 2176 5 + 16775 AAGCC s danRer1.chrM 1877 5 + 16596 CAATT a score=-1173.0 s hg17.chrM 1506 2 + 16571 -AT s panTro1.chr3 35463281 2 - 209662276 -AT s galGal2.chrM 2177 1 + 16775 -A- s danRer1.chrM 1877 2 + 16596 CA- a score=-1064.0 s hg17.chrM 1507 6 + 16571 ---TACTTC s galGal2.chrM 2180 3 + 16775 ---CAT--- s danRer1.chrM 1878 6 + 16596 AATTGC--- a score=-59.0 s hg17.chrM 1507 4 + 16571 TACT s galGal2.chrM 2177 4 + 16775 AGCC s danRer1.chrM 1878 4 + 16596 AATT a score=-3811.0 s hg17.chrM 1511 2 + 16571 -TC s mm5.chrM 927 1 + 16299 --T s rn3.chr7 48862744 2 - 143082968 -TT s galGal2.chrM 2182 1 + 16775 -T- s danRer1.chrM 1882 2 + 16596 GC- a score=-14425.0 s hg17.chrM 1513 23 + 16571 AAAGGACAT-------------TTAAC-TAA--AACCCC-- s mm5.chrM 928 26 + 16299 AAATTAAAC-------------TTAACATAATTAATTTC-- s rn3.chr7 48862746 23 - 143082968 AAAAAATAT-------------TCT---TTGCCTATATT-- s canFam1.chrM 928 39 + 16727 ATAAGACACAACCATAACCATATTAACTTAACTAAAACA-- s galGal2.chrM 2183 21 + 16775 -----------------CAACATCAAT-AAATATATACT-- s danRer1.chrM 1884 21 + 16596 -------------------ACAAGAAA-TAATTAATACAGA a score=-271.0 s hg17.chrM 1536 10 + 16571 TACGCATTTA s galGal2.chrM 2208 10 + 16775 CTCCCGGCTA s danRer1.chrM 1905 10 + 16596 AGCACAGACA a score=-3011.0 s hg17.chrM 1536 9 + 16571 ----TACGCATTT s mm5.chrM 954 9 + 16299 ----TAGACATCC s rn3.chr7 48862769 9 - 143082968 ----TCAACATTT s galGal2.chrM 2206 6 + 16775 -------CCCTCC s danRer1.chrM 1905 9 + 16596 AGCACAGAC---- a score=856.0 s hg17.chrM 1545 4 + 16571 ATAT s panTro1.chr3 35463322 4 - 209662276 ATAT s mm5.chrM 965 4 + 16299 TTAT s rn3.chr7 48862779 2 - 143082968 --AT s galGal2.chrM 2215 4 + 16775 CTAA a score=0.0 s hg17.chrM 1546 3 + 16571 TAT a score=-583.0 s hg17.chrM 1546 3 + 16571 TAT s galGal2.chrM 2218 1 + 16775 A-- a score=94180.0 s hg17.chrM 1549 256 + 16571 AGAGGAGACAAGTCGTAACATGGTAAGTGTACTGGAAAGTGCACTTGGACG--AACCAGAGTGTAGCT-TAA---CACAAAGCACCCAACTTA-----CACTTAGGAGAT-----TTCAA-------------CTTAACT--TGACCGCTCTGAGCTAAAC--CTAGCC-------CCAAACCCACTCCACCT---------TACTACCAG--ACAACC---TTAGCCAAACCATTTACCC---AAAT----AA---------AGTATAGGCGATAGAAAT---TGAAACCTGGCGCAATAGA----TATAGTACCGCAAGGGAAAGATGAAA s panTro1.chr3 35463326 259 - 209662276 ACAGGAGATAAGTTGCAACATGGTAAGCATACTGGGAAGTGCGCTTGGACA--AACCAAAGTGTAGCT-TAA---ACCAAAGCATCCAGCTTA-----CACCTGGAAGAT-----TTCAT-------------TGTGACC--TGATCACTTTGAGCCAACT--CTAGCC-------CCAAACC---------TCGCTAAAAATACTATTAA--ACTATC---TTAATCAAACGATTTACCTTAGAAA-----AA---------AGTTTAGGCAACAGCAATTTTT--ACCCTGGTGCAATAGA----CATAGTATCATAAGGGAAAGATGAAA s mm5.chrM 970 261 + 16299 AGAGGAGATAAGTCGTAACAAGGTAAGCATACTGGAAAGTGTGCTTGGAAT--AATCATAGTGTAGCT-TAA--TATTAAAGCATCTGGCCTA-----CACCCAGAAGAT-----TTCA----------------TGACCAATGAACACTCTGAACTAATC--CTAGCC-------CTAGCCC---------TACACAAA--TATAATTAT--ACTATTATATAAATCAAAACATTTATCCTACTA------AA---------AGTATTGGAGAAAGAAATTCGTACATCTAGGAGCTATAGA----ACTAGTACCGCAAGGGAAAGATGAAA s rn3.chr7 48862782 248 - 143082968 GGAGGCGATGAGCTCTAACATGATAATCGTACTGGAAAGTGTGCTT--------ATCTTAGTATATCA-TAATTTTTAAAAGCATCTGGTCTACCCTCCCCCCAGAAG---------CA-----------------------TGTATGCTCTGAATCAACT--CTAGCA-------TAAAAAC-------CCTAAACTAAAATATATTT----ATTACT---TGAATTAAGTCATTTGGATTAATA------GA---------AATTTTGGTGAGAGAAACTTAT-TTTTTAGGCACTATGGA----AATGGCACCATCA-GGAAAGATGAAA s canFam1.chrM 969 258 + 16727 AGAGGAGACAAGTCGTAACAAGGTAAGCATACCGGAAGGTGTGCTTGGATT--AATCAAAGTGTAGCT-TAA----CTAAAGCGTCTGGCCTA-----CACCCAGAAGAT-----TTCA----------------TTACTTATGGCCACTTTGAACAAAAG--CTAGCCCAA----CTAACCC---------CAAACTTAAGTATTACA----GACACA---TAAAATAAAACATTTAGTTAAACAAT---AAA---------AGTATAGGAGATAGAAATTTTA----ATTGGAGCGATAGA----GATAGTACCGTAAGGGAATGATGAAA s galGal2.chrM 2219 281 + 16775 AGACGAGGCAAGTCGTAACAAGGTAAGTGTACCGGAAGGTGCACTTAGACT---ACCAAGGCGTAGCTATAA--CTTCAAAGCATTCAGCTTA-----CACCTGAAAGATACC--CTCAACAGACAAGGTCGCCTTGACT--TGCCCCCCCT-----------CTAGCCCGA----CAAACTC---------GTACCCTTAACATA-------AAAAAC---TTACCTCCCCCTCTTAACCAAAACATTATAAA--TTGTCCCAGTATAGGCGATAGAAAAGACT--ACCCCGGCGCAATAGAGGCTAACTGTACCGCAAGGGAAAGATGAAA s danRer1.chrM 1915 285 + 16596 AGGGGGGAAAAGTCGTAACAAGGTAAGTGTACCGGAAGGTGCACTTGGACATTATCCAAGACGTGGCT-GAA--CAGTTAAGCATCTCACTTA-----CACCGAGAAAACATCCGTGCA-----------------AATC--GGATCGTCCTGAGCTAAATAGCTAGCTTAACCATCAAGATC---------AACTTAAAAACATCAATAACCTATAAT---CAACCTAAAACCACAAACTAAACCAT----TATATTATCCTAGTATGGGAGACAGAAAAGATA-AAATACTAAGCAATAGA----GAAAGTACCGCAAGGGAACGCTGAAA a score=152796.0 s hg17.chrM 1805 245 + 16571 ------------AATTATAACCAAGCA-TAATATAGCAAGGACTAACCCCTATACCTTCTGCATAATGAATTAACTAGAAATAACTTTGCAAGGAGAGCCAAAGCTAAGACCCCCGAAA-CCAGACGAGCTACCTAAGAACAG----CTAAAA---GAGCACACCCGTCTATGTAGCAAAATAGTGGGAAGATTTATAGGTAGAGGCGACAAACCTACCGAGCCTGGTGATAGCTGGTTGTCCA-AGATA-GAATCTTAGTTCAACTT s panTro1.chr3 35463586 243 - 209662276 ------------AACTATA-TCAAGCACTAAAA-AGCAAGGACAAGCCCTTATACTTTCTGCATAATGTATTAACTAGAAATA-CTTTACACAGAAAACTATAGCCAAGTCCCCCAAAA-CCAGATGAGCTACACAAGAATAG----CTGAAA---GAGCACACTCACCTACATGGCAAAATAGTGGGAAGATTCATGAGTAGTGGTGACAAGTCTACCAAGCCTGGTGATAGCTGGTTGTCCA-AGATA-GAATCTTAGTTCAACTT s mm5.chrM 1232 245 + 16299 ------------ACTAATT-AAAAGTAAGAACA-AGCAAAGATTAAACCTTGTACCTTTTGCATAATGAACTAACTAGAAAACTTCTAACTAAAAGAATTACAGCTAGAAACCCCGAAA-CCAAACGAGCTACCTAAAAACAA----TTTTAT---GAATCAACTCGTCTATGTGGCAAAATAGTGAGAAGATTTTTAGGTAGAGGTGAAAAGCCTAACGAGCTTGGTGATAGCTGGTTACCCA-AAAAATGAATTTAAGTTCAATTT s canFam1.chrM 1228 246 + 16727 ------------ACATCTT-AACAGTATTAAAC-AGCAAAGATTACCCCTTCTACCTTTTGCATAATGAACTAGCCAGAAACAACTTAACAAAGAGAACTTAAGCTAAGCTCCCCGAAA-CCAGACGAGCTACCCATAAACAAT---CTAAAA---GGATCAACTCATCTATGTAGCAAAATAGTGAGAAGATTTGTGGGTAGAGGTGAAAAGCCTAACGAGCCTGGTGATAGCTGGTTACCCACAGACA-GAATTTTAGTTCAACTT s galGal2.chrM 2507 248 + 16775 ------------GAAAACC-ATAAGCAAAAAAC-AGCAAAGACCAACCCTTGTACCTTTTGCATCATGATTTAGCAAGAACAA-CCAAGCAAAGTGAGCTAAAGTTTGCCTTCCCGAAACCCAAGCGAGCTACTTGCGAGCAG----CTAAAATTTGAGCGAACCCGTCTCTGTTGCAAAAGAGCGGGATGACTTGCCAGTAGAGGTGAAAAGCCTACCGAGCTGGGTGATAGCTGGTTACCTG-TCAAACGAATCTAAGTTCCCCCT s danRer1.chrM 2200 263 + 16596 GAGAAATGAAATAACCCGT-AAAAGCAATAAAA-AGCAAAGATTAAACCTTGTACCTTTTGCATCATGATTTAGCCAACACCA-CTAGGCAAAGAGACCTTTAGTTTAAAGCCCCGAAT-CCAGGTGAGCTACCCCGAGACAGCCTATTTAACTTAGGGCCAACCCGTCTCTGTGGCAATAGAGTGGGAAGAGCTCCGGGTAGAAGTGACAGACCTATCGAACCCGGCAATAGCTGGTTGTCTG-GGAGATGAATAAAAGTTCAGCTT a score=2454.0 s hg17.chrM 2050 19 + 16571 TAAATTTGCCCACAGAA-------CC s panTro1.chr3 35463829 17 - 209662276 TAAACTTACCCACAGAA--------- s mm5.chrM 1477 17 + 16299 TAAACTTGCTAAAAAAA--------- s canFam1.chrM 1474 17 + 16727 TAAATTTACCtaaaaaa--------- s galGal2.chrM 2755 26 + 16775 TAACCCACCCCCTAAAGACACCCACC a score=-424.0 s hg17.chrM 2069 37 + 16571 CT--CTAAATCCCCTTG---TAAATTTAACTGTTAGTCCAAA s panTro1.chr3 35463846 38 - 209662276 -TTACTTAATTTCCCAG---TAAGTTTAACTGTCAGTCTAAA s mm5.chrM 1494 38 + 16299 -CAACAAAATCAAAAAG---TAAGTTTAGATTATAGCCAAAA s canFam1.chrM 1491 37 + 16727 --aataaaattttaatg---taaatttaaaatataGTCTAAG s galGal2.chrM 2781 42 + 16775 TTTGTCAACCTTGAGAACGTTGGGGTTAAGAGCAATTCGATG s danRer1.chrM 2499 37 + 16596 --CACAAAATTAAGAGA---AAAATACGAAAGTTAGTTAAAG a score=163719.0 s hg17.chrM 2106 463 + 16571 GAGGAACAGCTCTTTGGACACTAGGAAAAAACCTTG-TAGAGAGAGTAA-----AAAAT--------------TTAACACCCATAGTAGGCCTAAAAGCAGCCACCAAT-TAAGAAAGCGTTCAAGCTCA---ACACCCA-CTACCTAAAA----AATCCCAAACATATA----AC-TGAACTCCT-CAC--ACCCAATTGGACCAATCTATCACCCTATAGAAGAACTAATGTTAGTATAAGTAA-CATGAA-AAC------ATTCTCCT-CCGCATAAGCCTGCGTCAGATCAAAACACTGA---ACTGACAATTAA-CAG-----------------CCCAATATCTACAATCAAC-----CAACAAGTCATTATTACCCT--------CACTGTCAACCCAACACAGGCATGCTCATAAGGAAAGGTTAAAAAAAGTAAAAGGAACTCGGCAAAC-CTTACCCCGCCTGTTTACCAAAAACATCACCTCTAGC--ATCACCAGTATTAGAGGCACCGCCTGCCCAGTGACAC---ATGTTTAACG s panTro1.chr3 35463884 464 - 209662276 GAGGGACAGCTCTTTAGACCCTAGGAAGCAACCTTCCTACAGAGAGTAA-----AAAATA-------------TTACCACC-ATAGTTGGCCCAAAAGCAACCACCAGT-TAAGAAAGCATTTAAGCTCA---ACATCTAACTATCTTAAATTCTAATC----------ACTCTAC-TGTACTCCT-AAC--ATCACATTGGACTAATCTATTACTTAATAGAAGCAATAATGTTAATATAAGTAA-CATGAA-GAC------ATTCTCCA-TTGCATAAGCTTACATCAGACCAGAATA---ACCCACTGGCAGTTAA-CAG-----------------CCTAATATT---AATAAAC-GATATAATAAGT-------ACCCTATTATTTACACTGTTAACTCAACAAAGGCATGCTC-TAAGGAAAGTTTACAACAAGTAAAAGGAACTCAGCAAAT-CTTACCCTGCCTGTTTACCAAAAACATCACCTCTAGC--ATTACCAGTATTAGAGGCACTGCCTGCCCAGTGACAT---ATGTTCAACT s mm5.chrM 1532 472 + 16299 GAGGGACAGCTCTTCTGGAAC--GGAAAAAACCTTT-AATAGTGAATAATTAACAAAACA-----------GCTTTTAACC-ATTGTAGGCCTAAAAGCAGCCACCAAT-AAAGAAAGCGTTCAAGCTCA---ACATAAA---ATTTCAAT---TAATTCCATAATTTAC----AC-CAACTTCCTAAAC--TTAAAATTGGGTTAATCTATAACTTTATAGATGCAACACTGTTAGTATGAGTAA-CAAGAA-TTCC----AATTCTCCA--GGCATACGCGTATAACAACTCGGAT-----AACCATTGTTAGTTAATCAG-----------------ACTATAGGC---AATAATC--ACACTATAAATAATC---CACCTATAACTT-CTCTGTTAACCCAACACCGGAATGCCT-AAAGGAAAGATCCAAAAAGATAAAAGGAACTCGGCAAACAAGAACCCCGCCTGTTTACCAAAAACATCACCTCTAGC--ATTACAAGTATTAGAGGCACTGCCTGCCCAGTGACTA---AAGTTTAACG s rn3.chr6 55165806 419 + 147642806 GAAGGGCAGCTCTTTCTAA--TAGGAAATAACTTTA-ATTAGAGAATAA-----AAAAAA----------------------ACAG---------------------------ATATGCATTCAAGGTCA---ACAAACA---ATTTAGAA-----TTCCAGTATTCATG----AG-TAACTTCCTAAAT--TACATATTGGCTTAATCTATAAGGTAGCAGATAAAATTTTATTAAAATTAGTAA-TAAGAA-GAA------ACTCTTCA--TGTGTGAGAACACTTCAAATCAAAT-----ACCCACTGATAATTAAAATG-----------------CCTAGAGAT---AA-------ATTTAATAACACACT---TCTATTTAATT--TATTGTCAACCCTATACAAGAACACAC--AGGGAAAGATTAAAAGAAATGAAAGGAAGTTGGCAATC-AAGAACCCACCTATTCACCAGAAGAGTCTCCTTTGGG--ATTGATAGTATTAGAGGCGCTATATTCCCAGGGTCAG---ACGCTAAATG s canFam1.chrM 1528 466 + 16727 AAGGTACAGCTTCTTAGAATC-AGGATACAACCTTT-ATTAGAGAGTAT-----ATACTA-------------ATATCACC-ATAGTTGGCTTAAAAGCAGCCACCAAT-TGAGAAAGCGTTCCAGCTCA---ACAAACA---ATATAACT---TAATCCCAACCATACT----ACATCAACTCCT-AATTATACCCCCTGGGTCATTCTATTTAAGTATAGAAGCAATAATGCTAGTATGAGTAA-CAAGAACCAT------TTTCTCCC--CGCATAAGCTTATATCAGGAACGGATA---GACCACTGATAGTTAA-CAA-----------------TCTGATAAT---ATCAACC-----CAAAAATGAAAT---ACTTATCCACCC-CATTGTTAACCCAACACAGGTATGCATTCAAGGAAAGATTAAAAGGAGTAAAAGGAACTCGGCAAACACAAACCCCGCCTGTTTACCAAAAACATCACCTCCAGC--ATTTCTAGTATTGGAGGCACTGCCTGCCCGGTGACAC---TTGTTTAACG s galGal2.chrM 2823 453 + 16775 GGGGTACAGCTCCATCGAAAA-AGAACACAACCTCC-TCCAGCGGATAA-----TAATCAC----------CCCTCCCCGC-ACTGTGGGCCTTCAAGCAGCCACCAACAAAAGAGTGCGTCAAAGCTC---------CC---TCATTAAA----AAATCTAAAACCCTA----TT-TGACTCCCTCAAC----CAAAGCAGGTTAACCTATGAC--AATAGAAGAATCAATGCTAAAATGAGTAATCTGGAA-CCT------ATCCTCCTACGGCGTAAACTTACATTA-------------ATACATT----ATTAA-CAG-----------------AACTCAACT---TATACCCCCACACTAACAAGCAAT---ACGTATTCCTCA-ATCTGTTAAGCCAACCCAGGAGCGCCC--ACAGGATGATTAAAACCTACAGAAGGAACTCGGCAAACCAAAGACCCGACTGTTTCCCAAAAACATAGCCTTCAGCTAACAACAAGTATTGAAGGTGATGCCTGCCCAGTGACCCCCAAAGTTCAACG s danRer1.chrM 2536 494 + 16596 AGGGTACAGCCCCTTTAACAA-AGGATACAACCTTT-TCAGGAGAATAA-----AGATCATAATTTACAAAACACGTTGTC-GTAGTGGGCCTGGAAGCAGCCACCTAA-AAAGAAAGCGTTAAAGCTCAGGTAAGAAGA---AATTCATA----ATTCTGACAATAATA----TC-TTACTTCCCTAAA----AATACCAGACTAATCCATACAAATATGGAAGAAATTATGCTAAAATGAGTAA-CAAGAA-GAACCTGTACTTCTCCA--AGCACAAGTGTAAGCCAAGTTGGACA----AACCATTGGCAATTAA-CGAGCCCAAACAAAGAGGGCAATGTGAGT---TAAAAAC--TGAGAAAAATCCACA---ACAGA--------CATCGTTACCCCCACACTGGAGTGCATATAAGGAAAGACTAAAAGAAAGGGAAGGAACTCGGCAAACACAAGCCTCGCCTGTTTACCAAAAACATCGCCTCCTGA--CATCCCAATATAGGAGGTCCAGCCTGCCCAGTGACAA---TAGTTTAACG a score=23403.0 s hg17.chrM 2569 19 + 16571 GCCGCGGTACCCTAACCGT s panTro1.chr3 35464348 19 - 209662276 GCCACGGTATCCTGACCAT s mm5.chrM 2004 19 + 16299 GCCGCGGTATCCTGACCGT s canFam1.chrM 1994 19 + 16727 GCCGCGGTATCCTGACCGT s galGal2.chrM 3276 19 + 16775 GCCGCGGTATCCTAACCGT s danRer1.chrM 3030 19 + 16596 GCCGCGGTATTTTGACCGT a score=421032.0 s hg17.chrM 2588 571 + 16571 GCAAAGGTAGCATAATCACTTGTTCCTTAAATAGGGACCTGTATGAATGGCTCCACGAGGGTTCAGCTGTCTCTTACTTTTAACCAGTGAAATTGACCTGCCCGTGAAGAGGCGGGCATGACACAG-CAAGACGAGAAGACCCTATGGAGCTTTAATTTATTAATGCAAA-CAGTACCT--AACAAACC---CACAGGTCCTAAACT---ACCAAA--CCTGCATTAAAAATTTCGGTTGGGGCGACCTCGGAGCAGAACCCAACCTCCGAGCAGTACATGCTAAGACTT--CACCAG------------------TCAAAGC-GAACTACTATACTC---------AATTGATCCA---AT-A-A--CTTGACCAACGGAACAAGTTACCCTAGGGATAACAGCGCAATCCTATTCTAGAGTCCATATCAACAA-TAGGGTTTACGACCTCGATGTTGGATCAGGACATCCCGATGGTGCAGCCGCTATTAAAGGTTCGTTTGTTCAACGATTAA-AGTCCTACGTGATCTGAGTTCAGACCGGAGTAATCCAGGTCGGTTTCT-ATCTACT--TCAAATTCCTCCCTGTACGAAAGGACAAGAGAAATAAGGCC---------------------------------------------TACTTCACA s panTro1.chr3 35464367 568 - 209662276 GCAAAGGTAGCATAATCACTTGTTCCCTAAATAGGGACTTGTACGAATTGCTACACGAGGGTTCAGCTGTCTCTTACTTTTAATCAGTGAAATTGACCTATCAGTGAAGAGGTGGATATAAAAAAAATAAGACGAGAAGACCCTATGGAGCTTTAATTCATTAATACAAA-TAAAAACTCAAACAAGCC---AACAGGCCCTAGCCT---ACTATC--CCTGCATTAAAAATGTTGTTTGGGGTGACCCCGGAGCATAATTCAACCTCTGAACGATGTAAACTAAGACCG--CACTAG------------------TCTAAGC-GAGTTAACATAC------------GTTGACTCA---ATTA-A--TTTGATGAGCGGAATAAGTTATCCTAGGGATAACAGCACAATCCTATTCTACAGTCCATGTCAACAA-TAGTGTTTATGACCTCAATGTTGGATCAGGACATCCTAATGGTGCAGCTGCTATTAAGGGTTTGTTTCTTCAGTGATTAA-AGTCCTACCTGATCTGAGGTCAGACTGGAGTAATCCAGGTTGGTTTCT-AACTATT--TAACATTTCTCCTAGTACAAAAGGACAA----AATAGTGCC---------------------------------------------CACTTCATA s mm5.chrM 2023 575 + 16299 GCAAAGGTAGCATAATCACTTGTTCCTTAATTAGGGACTAGCATGAACGGCTAAACGAGGGTCCAACTGTCTCTTATCTTTAATCAGTGAAATTGACCTTTCAGTGAAGAGGCTGAAATATAATAA-TAAGACGAGAAGACCCTATGGAGCTTAAATTATATAACTTATC-TATTTAATTTATTAAACC---TAATGGCCCAAAA-----ACTATAG-TATAAGTTTGAAATTTCGGTTGGGGTGACCTCGGAGAATAAAAAATCCTCCGAATGATTATAACCTAGACTT---ACAAG------------------TCAAAGTAAAATCAACATATCT---------TATTGACCCAGATAT-A-T--TTTGATCAACGGACCAAGTTACCCTAGGGATAACAGCGCAATCCTATTTAAGAGTTCATATCGACAATTAGGGTTTACGACCTCGATGTTGGATCAGGACATCCCAATGGTGTAGAAGCTATTAATGGTTCGTTTGTTCAACGATTAA-AGTCCTACGTGATCTGAGTTCAGACCGGAGCAATCCAGGTCGGTTTCT-ATCTATT--TACGATTTCTCCCAGTACGAAAGGACAAGAGAAATAGAGCC----------------------------------------------ACCTTACA s rn3.chr3 85357956 538 - 170969371 GCATATATAAAATAATGTCTTG-TCTCTAAATAAGGGATTGAATGAATGTCCACACCAGACTTTTATTGCCAATTACTTCTAATCAGTGAAATTGACTTTCCTATGAAAAGAAAGTAATAAATACA-TAAGATGTGAAA------------CTTAATCTATTAGTTCAAT-AAAAAAATT-AATTACCT---TAAGGGACTAAAA-----ATCATGA-TCTAAATTACTAATTTTGTTTAGGGTGAGCTCAGGATATAAATAAATGTCTATATGGC-CAAGCACAGACTC--ACTCTG------------------TCACAAT-AAACACTTTTATTT----------ATTGACCCA---GA-A-A--TTTGATCTACGGGATAAATTATTTTAGGACCAACCCCAC-ATTCTATTGTGTGGTTTATGATCATAG-TCAGGTTTATGATTCCAGTGTTAAATCAAGATGCCCTAACTGTGTAACA--TAATAAAGTTTGATTGCTACA------AA-AGTCCCATGGGGTCTGAGTTCACATTGCA-----CCAGGTT--TCTCTAATCTATA--TTGTTTTTGTCAGAATACAAAGGGGAAA---AAAAGAGGTC---------------------------------------------CAGTTTACA s canFam1.chrM 2013 578 + 16727 GCAAAGGTAGCATAATCATTTGTTCTCTAAATAGGGACTTGTATGAATGGCCACACGAGGGTTTAACTGTCTCTTACTCCCAATCAGTGAAATTGACCTTCCCGTGAAGAGGCGGGAATACCACAA-TAAGACGAGAAGACCCTATGGAGCTTTAATTAACTAACCCAAACTTATGGATACTAGATACC---TACAAGGCATAACATAACACCATTATTATGAGTTAGCAATTTAGGTTGGGGTGACCTCGGAATATAAAAAAACTCCCGAGTGATTAAAATTTAGACCC---ACAAG------------------TCAAAAT-ACAACATCACTT------------ATTGATCCA---AT-A-ATTTTTGATCAACGGAACAAGTTACCCTAGGGATAACAGCGCAATCCTATTCAAGAGTCCATATCGACAA-TAGGGTTTACGACCTCGATGTTGGATCAGGACATCCTAATGGTGCAGCAGCTATTAAGGGTTCGTTTGTTCAACGATTAA-AGTCCTACGTGATCTGAGTTCAGACCGGAGTAATCCAGGTCGGTTTCT-ATCTATT-ATACAACCTCCCCCAGTACGAAAGGACAAGGGATGTAAGGCC---------------------------------------------TACCTCACA s galGal2.chrM 3295 630 + 16775 GCGAAGGTAGCGCAATCAATTGTCCCGTAAATTGAGACTTGTATGAATGGCTAAACGAGGTCTTAACTGTCTCCTGTAGGTAATCTATGAAATTAGTATTCCCGTGCAAAAACGAGAATGTGAACA-TAAGACGAGAAGACCCTGTGGAACTTTAAAATCACGACCACCT-TACAACCTTACACAGCCC---CACTGGGTCCACCCACACATAAACC-CCTGGTCGACATTTTTCGGTTGGGGCGACCTTGGAGAAAAAAAAATCCTCCAAAC-CCACAGACCACAACTC---TTCAC------------------TAAGACC-AACTCCTCAAAGTACCAACAGTAACCAGACCCA---AT-ATA--ATTGAGCAATGGACCAAGCTACCCCAGGGATAACAGCGCAATCTCCTCCAAGAGCCCATATCGACAA-GGAGGTTTACGACCTCGATGTTGGATCAGGACAACCTAATGGTGCAACCGCTATTAAGGGTTCGTTTGTTCAACGATTAACAGTCCTACGTGATCTGAGTTCAGACCGGAGCAATCCAGGTCGGTTTCT-ATCTATG---GACACTCCTCCTAGTACGAAAGGACCGGAGAAGTGGGGTCAATACCACTGAGCACACCCCAACCTTCTAAGCAATGAATACAACTCAACTGCCA s danRer1.chrM 3049 597 + 16596 GCAAAGGTAGCGCAATCACTCGTCCTTTAAATAGGGACCTGTATGAATGGCCAAACGAGGGCTTAACTGTCTCCCCCATCAAGTCAGTGAAATTGATCTATCCGTGCAGAAGCGGATATAATAATA-CAAGACGAGAAGACCCTTTGGAGCTTAAGGTACAAGATTTAAT-T--TACATCAAGCAAACCAATAAAAGTGATTAAACT---AGTAAAA-GATAAACCTCTACCTTCGGTTGGGGCGACCACGGAGTAAAAAACAACCTCCAAGCGGAACGGGCACAGCCCTAAAACCAAGAGAAACATCTCTAAGCCTCAGAAC-ACCTGACCAAAGAC---------GATCCGGCCT---AT-A-A--GCCGATCAACGAACCAAGTTACCCTAGGGATAACAGCGCAATCCTCTCTAAGAGTCCATATCGACGA-GGGGGTTTACGACCTCGATGTTGGATCAGGACATCCTAATGGTGCAGCCGCTATTAAGGGTTCGTTTGTTCAACGATTAATAGTCCTACGTGATCTGAGTTCAGACCGGAGTAATCCAGGTCAGTTTCT-ATCTGTAAAGCTATTTTTTCCTAGTACGAAAGGATCGGAAAAAGGGGGCC---------------------------------------------CATACTAA- a score=-368.0 s hg17.chrM 3159 14 + 16571 AAGCGCCTTC--CCCC s panTro1.chr3 35464935 15 - 209662276 AAGCACCCTC-GCCTC s mm5.chrM 2601 16 + 16299 AAGCGCTCTCAACTTA s canFam1.chrM 2592 16 + 16727 AGGCGCCTTAAAACTA s galGal2.chrM 3925 14 + 16775 AGAACCCCTC--CCCC s danRer1.chrM 3646 14 + 16596 AAGCACGCCCCACC-- a score=2194.0 s hg17.chrM 3173 6 + 16571 GTAAAT s panTro1.chr3 35464950 6 - 209662276 ATAAAT s mm5.chrM 2617 6 + 16299 ATTTAT s canFam1.chrM 2608 6 + 16727 ATAGAT s danRer1.chrM 3660 6 + 16596 CTAAAT a score=1283.0 s hg17.chrM 3179 12 + 16571 G-ATATCATCTCA s panTro1.chr3 35464956 12 - 209662276 G-ATGCTATCTCA s mm5.chrM 2623 13 + 16299 GAATAAAATCTAA s canFam1.chrM 2614 12 + 16727 G-AAGTCAACTCA a score=-632.0 s hg17.chrM 3191 15 + 16571 ----ACTTAGTATTATACC s mm5.chrM 2636 14 + 16299 ----ATAAAATAT-ATACG s canFam1.chrM 2626 18 + 16727 ATCTAACCAGTTT-ATCTC a score=3123.0 s hg17.chrM 3206 21 + 16571 CACACCC---ACCCAAGAACAGGG s panTro1.chr3 35464984 22 - 209662276 CACACCC--TACCCAGGAACAGGG s mm5.chrM 2650 24 + 16299 TACACCCTCTAACCTAGAGAAGGT s canFam1.chrM 2644 21 + 16727 CTCATAA---GCCCGAGAAAAGGG a score=273.0 s hg17.chrM 3227 1 + 16571 T s panTro1.chr3 35465006 1 - 209662276 T s mm5.chrM 2674 1 + 16299 T a score=6671.0 s hg17.chrM 3228 83 + 16571 TTgttaagatggcagagcccggtaatcgcataaaacttaaaactttacagtcagaggttcaattcctcttcttaacaacaTAC s panTro1.chr3 35465007 83 - 209662276 TTgttaagatggcagagcctggtaattgcataaaacttaaaattttataatcagaggttcaactccttttcttaacaATATGC a score=300.0 s hg17.chrM 3311 1 + 16571 C s panTro1.chr3 35465090 1 - 209662276 C s galGal2.chrM 4062 1 + 16775 C a score=699.0 s hg17.chrM 3312 5 + 16571 CATGG s panTro1.chr3 35465091 5 - 209662276 TATAA s galGal2.chrM 4063 5 + 16775 CCTAA s danRer1.chrM 3825 5 + 16596 CTTAA a score=2951.0 s hg17.chrM 3317 8 + 16571 CCAACCTC s panTro1.chr3 35465096 8 - 209662276 TTAACCTT s mm5.chrM 2760 8 + 16299 TTAATATC s galGal2.chrM 4068 8 + 16775 CAAACCTT s danRer1.chrM 3830 8 + 16596 TTAACCCC a score=2100.0 s hg17.chrM 3325 5 + 16571 CTACT s panTro1.chr3 35465104 5 - 209662276 CTCCT s mm5.chrM 2768 5 + 16299 CTAAC s rn3.chr3 129984747 5 + 170969371 CTTCT s galGal2.chrM 4076 5 + 16775 CTAAT s danRer1.chrM 3838 5 + 16596 CTAGC a score=142225.0 s hg17.chrM 3330 184 + 16571 CCTCATTGTACCCATTCTAATCGCAATGGCATTCCTAATGCTTACCGAACGAAAAATTCTAGGCTATATACAACTACGCAAAGGCCCCAACGTTGTAGGCCCCTACGGGCTACTACAACCCTTCGCTGACGCCATAAAACTCTTCACCAAAGAGCCCCTAAAACCCGCCACATCTACCATCACC s panTro1.chr3 35465109 183 - 209662276 ACTTATTATCCCCACTCTTATTGCTATAGCATTCCTTACACTCATCGAATGAAAAATCTTAGGCTATACACAACTATGCAAAGACCCAAA-ATTGTAGGTCCCTATGGGCTGCTTCAGCCATTCGCTGATGGAATAAAACTTTTCACCAAAGAACCCTTACGGCCCTCAACATCCACTATTACC s mm5.chrM 2773 184 + 16299 ACTCCTCGTCCCCATTCTAATCGCCATAGCCTTCCTAACATTAGTAGAACGCAAAATCTTAGGGTACATACAACTACGAAAAGGCCCTAACATTGTTGGTCCATACGGCATTTTACAACCATTTGCAGACGCCATAAAATTATTTATAAAAGAACCAATACGCCCTTTAACAACCTCTATATCC s rn3.chr3 129984752 171 + 170969371 ATTAATTATCTCCATTTTCATCACTATAGCATTTCTAACTTCTTTTGAATGGAAAAGAATAGGTAATATGTGATTATTAGAAGAACCACGCATTGTAGATCTCCATGGTTTCTTTTAACAACTTCCTGGTGATGTAAAACTTTTCATCAAAGCAACCTTATATCCATTAAC------------- s canFam1.chrM 2769 184 + 16727 TCTTATTATCCCAATCCTTCTTGCCGTAGCCTTCCTCACCCTCGTTGAACGAAAAGTCTTAGGCTATATACAACTTCGAAAAGGACCTAATATTGTAGGCCCCTACGGCCTCCTTCAACCAATCGCAGACGCAGTAAAACTCTTCACAAAAGAACCTCTACGACCACTTACATCCTCTATATCA s galGal2.chrM 4093 184 + 16775 CTATATTCTCCCCATCCTAATCGCCGTGGCCTTCTTAACACTTGTAGAACGAAAAATCCTAAGCTACATGCAGGCCCGAAAGGGCCCAAACATTGTGGGCCCTTTTGGTCTACTCCAACCCGTTGCAGACGGGGTAAAACTATTCATTAAAGAGCCAATCCGACCATCTACCTCCTCCCCCTTC s danRer1.chrM 3843 184 + 16596 CTACGCCGTACCAGTATTAATTGCAGTAGCCTTCCTTACCTTAGTTGAACGAAAAGTGTTAGGCTATATACAACTCCGAAAAGGACCAAATGTAATAGGCCCCCGAGGACTGTTACAATCAGTAGCTGATGGCGTGAAACTTTTTATTAAAGAACCCATTCGACCATCTATGGCTTCTCCAATT a score=563983.0 s hg17.chrM 3514 816 + 16571 CTCTACATCACCGCCCCGACCTTAGCTCTCACCATCGCTCTTCTACTATGAACCCC-CCTCCCCATACCCAACCCCCTGGTCAACCTCAACCTAGGCCTCCTATTTATTCTAGCCACCTCTAGCCTAGCCGTTTACTCAATCCTCTGATCAGGGTGAGCATCAAACTCAAACTACGCCCTGATCGGCGCACTGCGAGCAGTAGCCCAAACAATCTCATATGAAGTCACCCTAGCCATCATTCTACTATCAACATTACTAATAAGTGGCTCCTTTAACCTCTCCACCCTTATCACAACACAAGAACACCTCTGATTACTCCTGCCATCATGACCCTTGGCCATAATATGATTTATCTCCACACTAGCAGAGACCAACCGAACCCCCTTCGACCTTGCCGAAGGGGAGTCCGAACTAGTCTCAGGCTTCAACATCGAATACGCCGCAGGCCCCTTCGCCCTATTCTTCATAGCCGAATACACAAAC-ATTATTATAATAAACACCCTCACCACTACAATCTTCCTAGGAACA---------ACATATGACGCACTCTCCCCTGAACTCTACACAACATATTTTGTCACCAAGACCCTACTTCTAACCTCCCTGTTCTTATGAATTCGAACAGCATACCCCCGATTCCGCTACGACCAACTCATACACCTCCTATGAAA----AAACTTCCTACCACTCACCCTAGCATTACTT--ATATGATATGTCTCCATACCCATTACAATCTCCAGCATTCCCCCTCAAACCTA-----AGAAATATGTCTGA---TAAAAGAGTTACTTTGATAGAGTAAATAATAGGAG-----------------------------------------------------------------------CTTAAACCCCC------TTATTTc s panTro1.chr3 35465292 811 - 209662276 CTTTATATTATTGCTTCAACACTAGCCCTTTCCATTGCTCTCCTTTTATGAACTCC-CCTCCCTATACCAGATCGTCTAATTAATTTTAATATAGGCCTCCTATTTATACTAGCAACATCAAGCCAGGCTGTCTACTCTAT-----GATCAGAATGAGCATCAAATTCAAAATATGCACTGATCAGTGCATTACGAGCTGTGGCCCAGACAATTTCATGTAAGGTCACCCTAGCCATTATCCTGCTATCAGTTCTACTGATAAGCGGCTCATTTAACTTATACACACTCATCACAATGCAAGAATTCCTCTGACTGCTCCTACCATCGTGGCCTCTAGCCATAATATGATTCATCTCCACTCTAGCAGAAACTAACCAAGCACCTTTTGATCTAGCAGAAGGAGAGTCAGAGTTAGTCTCAGGCTTCAACATTGAATACGCCACAAGGTCATTTGCCCTCTTCTTTATAGCAGAATATATGAAT-ATTATCATAATAAATGCCCTAACTACTACTATTTTCCTAGGAGCACTACACACTATATAT---------TTACCAGAACTGTACACCACAAATTTCATTACCAAGACCCTTCTTTTAACCACTCTATTTTTATGAATTCGAATGGCATACACTCGATTCCACTATGACCAACTCATACATCTTTTATGAAA----AAACTTCCTACCACTTATGCTAGCATT--TTGCATATGATATATCTCAATGCTTGTCCTAATTTCCAGCATCCCACCCCAAACATA-----GGAAATATGTCAGA---CAAAAGAATTACTTTGATAGAGTAAACAATAGAGG-----------------------------------------------------------------------TTAAAATCCTC------TAATTTc s mm5.chrM 2957 815 + 16299 TTATTTATTATTGCACCTACCCTATCACTCACACTAGCATTAAGTCTATGAGTTCC-CCTACCAATACCACACCCATTAATTAATTTAAACCTAGGGATTTTATTTATTTTAGCAACATCTAGCCTATCAGTTTACTCCATTCTATGATCAGGATGAGCCTCAAACTCCAAATACTCACTATTCGGAGCTTTACGAGCCGTAGCCCAAACAATTTCATATGAAGTAACCATAGCTATTATCCTTTTATCAGTTCTATTAATAAATGGATCCTACTCTCTACAAACACTTATTACAACCCAAGAACACATATGATTACTTCTGCCAGCCTGACCCATAGCCATAATATGATTTATCTCAACCCTAGCAGAAACAAACCGGGCCCCCTTCGACCTGACAGAAGGAGAATCAGAATTAGTATCAGGGTTTAACGTAGAATACGCAGCCGGCCCATTCGCGTTATTCTTTATAGCAGAGTACACTAAC-ATTATTCTAATAAACGCCCTAACAACTATTATCTTCCTAGGACCCCTATACTATATCAAT---------TTACCAGAACTCTACTCAACTAACTTCATAATAGAAGCTCTACTACTATCATCAACATTCCTATGGATCCGAGCATCTTATCCACGCTTCCGTTACGATCAACTTATACATCTTCTATGAAA----AAACTTTCTACCCCTAACACTAGCATTATGT--ATGTGACATATTTCTTTACCAATTTTTACAGCGGGAGTACCACCATACATATA------GAAATATGTCTGA---TAAAAGAATTACTTTGATAGAGTAAATTATAGAGG-----------------------------------------------------------------------TTCAAGCCCTC------TTATTTC s rn3.chr17 3179538 758 + 97307196 CTTTTTATCATTGCCCCAACCCCACCCCTCACTGTAGCACT----CTATGGATTCCATCTTTTTACCGCTCAATCCCTAACAAACATAGACCATGCGAT----TTTGTTCTAGCTACTTGGAGCCCATCAGTCGACTCGGTTTTATGACTGGAGTGAGTTTCAGCTCCTAAATTCGCAA-GAGTGGAGCCTCCTGAGCTGTAGTTCAGGC----TCAC-TGGAGTAACACTGGTTGCCATTC---TATCAAGTCGACTAATAAACGGACCGCTTACCCCACAGACACTGATTTATACCCAAGCGCATGTATTATTACTTCCACCGAGATGACCCC-AGCCACAATGTGATTCATCTCTCCACTAGCAGAAACCAATAGGACAGTGTTTGACCTAACAAAA------------TTAATACCA---TCCTACATTGGATATACTGCAGGACCATTTACTCTA-TCTTTATGTTGAAGCACACTACCAATTACTGTAATCAATACCCAAATACCCATACCTCCCTTAGAAGTATTGTATGATACCCTC---------CCTCCAGAAATTTTTATAAT---TTTTATAGTTAGAACTTTGCTTCTCACCACTACAGTTTTATAAAATTGAGCGTCTTTCCCTTAATTTTGACATAACCAACTAGTACATTTGTCATGAAGTAATAAACTTTCT--------------------GT--GTGAGACCAATTTCCATCTCTATTTTTATATC---AACCCTCCTCTATGCATA-------GAACACATCTAG---TAAAGG--TTAGTATGGTGTAATAAACAATAGATG-----------------------------------------------------------------------TTTAGTCTGTC------TTATTTC s canFam1.chrM 2953 816 + 16727 ATATTCATCCTAGCCCCCATTCTAGCTCTATCACTAGCCCTAACTATGTGAATTCC-CCTCCCAATACCCTACCCACTCATTAATATAAACTTGGGAGTCCTATTCATACTAGCAATATCAAGCCTCGCCGTGTACTCCATCCTCTGATCAGGATGAGCCTCAAACTCCAAATACGCCCTAATCGGAGCCCTTCGAGCAGTAGCTCAAACAATCTCATATGAAGTAACGCTAGCAATTATTCTTCTATCAGTCCTCCTAATAAACGGGTCATTTACACTATCCACGCTAATTATTACCCAAGAACATATATGATTAATCTTTCCGGCCTGACCCCTAGCCATGATATGATTCATCTCTACCCTAGCAGAAACTAATCGAGCCCCCTTCGACTTAACTGAAGGAGAATCCGAACTAGTCTCTGGATTTAACGTAGAGTATGCAGCAGGTCCTTTCGCCCTATTCTTTCTAGCAGAGTACGCAAAT-ATTATTATAATAAACATCCTCACAACAATTCTGTTCTTCGGCGCATTCCACAACCCATTC---------ATACCAGAACTCTACTCTATTAACTTCACTATAAAAACCCTCTTATTAACCATCTGCTTCCTATGAATTCGAGCATCATACCCTCGATTCCGCTACGATCAGTTAATACACTTATTATGAAA----AAATTTTCTACCCTTAACTTTAGCCCTATGC--ATATGACATGTTGCCTTACCCATTATCACCGCAAGTATCCCACCCCAAACATA-----AGAAATATGTCTGA---TAAAAGAGTTACTTTGATAGAGTAAATAATAGAGG-----------------------------------------------------------------------TTTAAATCCTC------TTATTTc s galGal2.chrM 4277 892 + 16775 CTCTTCATTATTACTCCAATCCTAGCACTACTCCTAGCCCTGACTATTTGAGTCCC-CCTCCCACTACCATTCCCCCTTGCAGACCTCAACCTAGGACTACTATTTCTCCTAGCCATATCAAGCCTAACTGTCTACTCTCTACTCTGATCCGGATGAGCATCAAACTCCAAGTATGCCCTAATCGGAGCCCTTCGAGCCGTCGCACAAACAATCTCATACGAAGTCACCCTAGCCATCATCCTGTTATCCACAATCATACTGAGCGGCAATTACACCTTAAGCACCCTGGCCATCACCCAAGAGCCCATCTACCTCATTTTTTCCGCATGACCCCTCGCAATAATATGATACATCTCTACCCTTGCTGAAACCAACCGCGCCCCATTTGACCTAACAGAAGGAGAGTCAGAGCTAGTCTCAGGATTTAATGTAGAATATGCCGCCGGACCATTCGCCATATTCTTCTTAGCCGAATACGCCAAC-ATTATACTAATAAACACACTAACCACCGTCCTATTCCTGAACCCAAGCTTCCTAAATCTC---------CCACCAGAATTATTTCCCATTGCACTCGCTACAAAAACCCTCCTCCTTTCATCCTCATTTCTATGAATCCGGGCCTCATATCCACGGTTCCGCTATGACCAACTAATACATCTTCTATGAAA----AAACTTCCTCCCCCTAACCCTAGCCTTATGC--CTCTGACATACCAGCATACCAATCAGCTACGCCGGCCTCC--CCCCAATCTAA-----GGAAGCGTGCCTGAAC-AAAAAGGATCACTATGATAAAGTGAAC-ATAGAGGTATAACAACCCTCTCACTTCCTTAATCCTAGAAAAGTAGGAATCGAACCTACACAGAAGAGATCAAAACTCTTCATACTCCCTCTATATTATTTT s danRer1.chrM 4027 824 + 16596 TTATTTTTAACAGCTCCAGTTCTTGCACTAATCCTAGCAATAATGCTATGGGCACC-CATACCCATGCCCTATCCAGTACTCGACCTAAATCTTGGAATTTTATTTATTATAGCCATCTCAAGCCTAGCAGTATACTCAATCCTGGGATCAGGTTGAGCATCAAACTCAAAATACGCATTAATTGGGGCCTTACGAGCTGTAGCGCAAACAATTTCATATGAAGTTAGCCTAGGACTTATTCTATTATCTGCCGTTATTTTTTCTGGGGGATACACCCTACAAACATTTAATACAACTCAGGAAGACACATGACTTCTACTTCCACTATGACCATTAGCCATTATATGATTTATCTCAACGCTGGCAGAAACAAACCGAGCACCGTTCGATCTTACAGAGGGGGAATCAGAACTAGTCTCAGGCTTCAATGTAGAGTATGCAGCAGGACCATTTGCCTTATTCTTTTTGGCTGAGTACTCAAAT-ATTTTACTAATAAACACCCACTCAACAGTACTATTTTTAGGAGCATCGTTTACCCCAGAT---------GCACCTGAGCTAATAACAATCAGTATTGCAACCAAAACTGCAATACTATCTATTTTGTTTCTCTGAATACGAGCATCATACCCACGATTCCGATACGACCAACTTATGCATCTTATCTGGAA----AAACTTTCTTCCAATCACATTAGTTCTAGTA--CTATGACATATCGCCCTACCAATCGCACTAGCTGGTCTACCCCCACAAACATAACTCAAGAACCGTGCCCGAATGCTAAGGGGTCACTTTGATGGAGTGAACCATAGGGG-----------------------------------------------------------------------TTAAAATCCCC------TCGGTTC a score=0.0 s hg17.chrM 4330 71 + 16571 taggactatgagaatcgaacccatccctgagaatccaaaattctccgtgccacctatcacaccccatccta a score=15771.0 s hg17.chrM 4330 70 + 16571 taggactatgagaatcgaacccatccctgagaatccaaaattctccgtgccaccta--tcacaccccatcct s panTro1.chr3 35466103 70 - 209662276 tagtactataggaatttaacctacctctgagaatccaaaattgtctgtgctaccta--tcacaccacgtcct s rn3.chr17 3180296 70 + 97307196 TAGACTTACAGGAATCAAACCCAGTCTTTCGAATTCAAAAACTGCCTCACTACCCA--GTATGCCTTATTCT s canFam1.chrM 3769 72 + 16727 tagaataataggcttcgaacctaatcttaagaattcaaagatcttcgtgctaccaaacttacactatattct a score=910.0 s hg17.chrM 4400 1 + 16571 a s panTro1.chr3 35466173 1 - 209662276 a s mm5.chrM 3842 1 + 16299 A s rn3.chr17 3180366 1 + 97307196 A s canFam1.chrM 3841 1 + 16727 a a score=149630.0 s hg17.chrM 4401 275 + 16571 AAGTAAGGTCAGCTAAA-TAAGCTATCGGGCCCATACCCCGAAAATGTTGG-TTATACCCTTCCCGTACTAATTAATCCCCTGGCCCAACCCGTCATCTACTCT-ACCATCTTTGCAGGCACACTCATCACAGCGCTAAGCTCGCACTGATTTTTTACCTGAGTAGGCCTAGAAATAAACATGCTAGCTTTTATTCCAGTTCTAACCAAAAAAATAAACCCTCGTTCCACAGAA---------------------GCTGCCATC-AAGTATTTCCTCACGCAAGCAACCGCATCCATAAT s panTro1.chr3 35466174 275 - 209662276 GATTAAGGTCAGCTAAA-TAAGCTATTGGGCCCATATACCAAAAATGTTGG-TTATATCCTTCCCATACTAATTAATCCCTTACCTCAACTTATTAT-TGCCCTCACCGTTTTCACAGGAACTTTTATCACAATGCTAGGCTCACACTGATTTCTCATCTGAACAGGGCTAGAAACAAACATACTAGCCCTTACCCCAATCTTAATTAAAAAAATAAATCCCTGCTCTACAGAA---------------------GCAGCCACC-AAATATTTCCTTACACAAGCAACCACATCTGTAAT s mm5.chrM 3843 276 + 16299 TAGTAAGGTCAGCTAAT-TAAGCTATCGGGCCCATACCCCGAAAACGTTGGTTTAAATCCTTCCCGTACTAATAAATCCTATCACCCTTGCCATCATCTACTTC-ACAATCTTCTTAGGTCCTGTAATCACAATATCCAGCACCAACCTAATACTAATATGAGTAGGCCTGGAATTCAGCCTACTAGCAATTATCCCCATACTAATCAACAAAAAAAACCCACGATCAACTGAA---------------------GCAGCAACA-AAATACTTCGTCACACAAGCAACAGCCTCAATAAT s rn3.chr17 3180367 265 + 97307196 TAGTAAGGTCA-TGAGA-TGCACCACTGGGCACA-ATCCCCCGAGCATTTG-CTACAGTTTCCCTCTATTAAT-AATCCCATA----------------------GCCATTACATCAAGCTCACTCATCATTATATTTAGTCCACACTTACTATCTACATGACCAGA-CTAGAAATAAGCACACAAGCATGAGTCCTGATTTTTATTAACAAATTG------TGAACTATGGAAGCAGGAGATGGATTTCTTAATGCGACTGCCTAAGTAATTCAT-GTGCAAACCACTACATCCTTACT s canFam1.chrM 3842 277 + 16727 CAGTAAGGTCAGCTAAATTAAGCTATCGGGCCCATACCCCGAAAATGTTGGTTTATACCCTTCCCGTACTAATAAAACCCCCTATTCTCATTATCATCATAGCA-ACTATCATGACAGGAACCATAATCGTCATACTAAGCTCGCACTGATTACTGATCTGAATTGGATTCGAAATAAACATGCTAGCCATCATCCCTATTCTCATAAAAAAGTACAATCCACGAGCCATAGAG---------------------GCCTCTACA-AAATATTTTCTTACACAAGCTACAGCCTCAATATT s galGal2.chrM 5170 276 + 16775 TAGTAAGGTCAGCTAAC-TAAGCTATCGGGCCCATACCCCGAAAATGATGGTTTAACCCCTTCCCCTACTAATGAACCCCCATGCAAAACTAATCTGCACAGTA-AGCCTCATCATGGGAACCAGCATCACAATCTCCAGCAACCATTGAATCTTAGCCTGAACAGGCTTAGAGATCAACACCTTAGCCATCATCCCCCTCATCTCCAAGTCACACCACCCCCGAGCGATTGAA---------------------GCCACTATC-AAATATTTCCTCACCCAATCAACTGCATCAGCCCT s danRer1.chrM 4922 276 + 16596 GGATGAGGTCAGCTAAT-TAAGCTACCGGGCCCATACCCCGAACATGATGGTTAAAGTCCCTCCTTCATCAATGAACCCTTATGTCCTTATAATTTTAATATCC-AGCCTAGGTCTAGGAACCACATTAACTTTTTCTAGCTCACACTGAATTTTAGCCTGAATAGGATTAGAAATTAATACTTTAGCAATTGTCCCTCTAATAGCACAACAACACCACCCACGGGCAGTAGAA---------------------GCCACCACA-AAATACTTCCTTATTCAAGCTGCTGCCGCAGCAAT a score=31081.0 s hg17.chrM 4676 152 + 16571 CCTTCT---------AATAGCTATCCTCTTCAACAATATACTCTCCGGACAATGAA-----CCATAACCAATACTACCAATCAATACTCATCATTA--ATAATCATAATGGCTATAGCAATAAAACTAGGAATAGCCCCCTTTCACTTCTGAGTCCCAGAGGTTACCC s panTro1.chr3 35466449 150 - 209662276 TCTCAT---------AACAGATATCCTTTCCAATAACCTGTTCTCCGGACAATGAA-----CTATAAT--ACACTATCAATCAATTCTTATCCTTA--ATAATAATAGTGGCCCTAGTAATAAAACTAGGAATAGCCCCCTTTCACTTCTGAGTCTCAGAGGTAATTC s mm5.chrM 4119 152 + 16299 TATCCT---------CCTGGCCATCGTACTCAACTATAAACAACTAGGAACATGAATATTTCAACAAC--AAACAAACGGT-----CTTATCCTTAACATAACATTAATAGCCCTATCCATAAAACTAGGCCTCGCCCCATTCCACTTCTGATTACCAGAAGTAACTC s rn3.chr3 129986043 145 + 170969371 TTTAATGGACAAATAATTAGTTATTAAATTCAGAAAAATA--------AGAATGTA-----AAATCATTTTGTGGATTAATTAATACT----------GTAACAGTAATTCTTCTGATAAAAAAATCATGCTTTTTTCCATTCTACATTTGAATACCAGAAGCCATTC s canFam1.chrM 4119 152 + 16727 ACTAAT---------AATAGGAGTCACTATCAACCTCCTTTACTCCGGCCAATGGG-----TAATCTCAAAAATCTCAAACCCCATCGCATCCATC--ATGATAACCACTGCCCTAACAATAAAACTAGGCCTATCTCCATTCCACTTCTGAGTTCCCGAAGTAACAC s galGal2.chrM 5446 152 + 16775 AATCCT---------CTTCTCGAGCATAACCAACGCCTGATCCACCGGACAATGAG-----ACATTACACAACTAAACCACCCGACATCATGCCTA--ATATTAACAATAGCAATCGCAATCAAATTAGGACTAGTCCCATTCCACTTCTGATTCCCAGAAGTACTCC s danRer1.chrM 5198 152 + 16596 AATTCT---------ATTCACAAGTACAACAAATGCCTGAATTTCAGGACAATGGG-----ATGTTACAGGTATACCAGGCCCAGCCACCAGTACA--GCAATAATGTTTGCATTGGCTCTCAAAATCGGTCTAGCACCAATACATTTTTGATTACCAGAAGTTCTTC a score=123662.0 s hg17.chrM 4828 652 + 16571 AAGGCACCCCTCTGACATCCGGCCTGCTTCTTCTCACATGACAAAAACTAGCCCC---CATCTCAATCATATACCAAATCTCTCCCTCACTAAACGTAAGCCTTCTCCT--CACTCTCTCAATCTTATCCATCATAGCAGGCAGTTGAGGTGGATTAAACCAAACCCAGCTACGCAAAATCTTAGCATACTCCTCAATTACCCACATAGGATGAATAATAGCAGTTCTACCGTAC--------------------AACCCTAACATAACCATTC--TTAATTTAACTATTTATATTATCCTAACTACTACCGCATTCCTACT-ACTCAACT------TAAACTCCAGCACCACGACCCT-ACTACTATCTCGCACC--TGAAACAAGCTAACATGACTAA---CACCCTTA---ATTCCATCCACCCTCCTCTCCCTAGGAGGCCTGCCCCCGCTAACCGG----CTTTTTGCCCAAATGGGCCATTATCGAAGAATTCACAAAAAACAATAGCCTCATCATCCCCACCATCATAGCCACCATCACCCTCCTTAACCTCTACTTCTACCTACGCCTAATCTACTCCACCTCAATCACACTACTCCCCA---TATCTAACAACGTAAAAATAAAATGACAGTTTGAACATACAAAAC---CCACCCCATTCCTCCCCACACT--------CATCGCCCTTACCACGCTACTCCT s panTro1.chr3 35466599 644 - 209662276 AGGGAATCTCTTTGATGTCTGGTATACTTCTCCTCACATGACAAAAACTAGCTCC---TATCTCAATTGTGTTTCAAA-CTTTTCATCAACAAACACGAACATCCTCCTGTCAC------AATCCTATCCATTATAGTGGGTGGTTGAGGGGGACTTAATCAAAC--AACTGTGTAAAATCCTAGCCTACTCCTCAGTCACTCACATAGGTTGAACAACAGCAGTACTAATTTAT--------------------AATCCAAACATTACTACCC--TAAACCTGATTATTTACTTTATCCTAACAACAACCGCATTTCTAGC-ACTCAACCAGAGTATAA------GCACCAGAACCCT-ATCACTATCTCACACC--TGAAACAAATGAGCATGGTTGA---CACCTGTA---ATTCCACTAATTCTACTATCCTTAGGAGGTTTATCCCCATTAACAGGGTTACTTTCT----AAATGAATCATCATTCAAGAATTTACAAAAAACAATAGCCTTACTACCCCAATCATTATAGTTAACATAACC-TACTCAACCTGTACTTTTATATATGCCTAGTCTATTCCTTCTCAGTAACACTATTCCCCA---TATCTAACAATATGAAAATAAAATGACAATTTGAAAACACAGAAC---CCACACTACTCTTCCCCCCACT-----TGTCATCTCTTCTACC---CTCCTCTT s mm5.chrM 4271 652 + 16299 AAGGGATCCCACTGCACATAGGACTTATTCTTCTTACATGACAAAAAATTGCTCC---CCTATCAATTTTAATTCAAATTTACCCGCTACTCAACTCTACTATCATTTT--AATACTAGCAATTACTTCTATTTTCATAGGGGCATGAGGAGGACTTAACCAAACACAAATACGAAAAATTATAGCCTATTCATCAATTGCCCACATAGGATGAATATTAGCAATTCTTCCTTAC--------------------AACCCATCCCTCACTCTAC--TCAACCTCATAATCTATATTATTCTTACAGCCCCTATATTCATAGC-ACTTATAC------TAA---ATAACTCTATAACCATCAACTCAATCTCACTTCTATGAAATAAAACTCCAGCAATAC---TAACTATA---ATCTCACTGATATTACTATCCCTAGGAGGCCTTCCACCACTAACAGG----ATTCTTACCAAAATGAATTATCATCACAGAACTTATAAAAAACAACTGTCTAATTATAGCAACACTCATAGCAATAATAGCTCTACTAAACCTATTCTTTTATACTCGCCTAATTTATTCCACTTCACTAACAATATTTCCAA---CCAACAATAACTCAAAAATAATAACTCACCAAACAAAAACTAAAC---CCAACCTAATATTTTCCACCCT-----AGCTATCATAAGCACA---ATAACCCT s rn3.chr17 3180986 514 + 97307196 AAGGGGGAGCACTAAAACTTAGCTCGCTTCACTTTGGAATACAAGGAATAACCCAAGGCATTTCCCTAATGTTTGTAATACCTTTCAAACTGA----------CCCCTC--AAATATCCCAATTTTCATTGTTATCTCTGATATATCA--TGTATTAAAGCAAAG-----TATGGGAAAACCTGGTGTAGTAAGCATTTGTCCAGATAGAATGAATAACAGCTGTTATTGTCTACTGTAATATTGCCTGATCCCCAGTTCATATGCCATTAGCCAGTATTCTCAACTCTTTATATTAATTTAAAT-------TATTTATATTAATTTAAAT------TAA----------------CCT-ACCAG-------------CGAAGTAAATTACCTT---TAA---CAGTTTTAACCATCCCAACAATCTTCTT--------------TGACCCTGTTAATGGA----ATTTCTACTTAAGTGAGATGTCAT----------------------------------------------------ATGACT-TCTCTAGTCTATATT----------CCTAATCTTATTTCTATTACAGACATGAC--------------------------ACAAAATAATGACTT-------CAGCAC---CTAAACTACTTAT----GAGCT--------CCTCCTATGTGTT--GTGACTCCT s canFam1.chrM 4271 655 + 16727 AGGGAATTACGCTCATATCAGGAATAATCCTACTAACATGACAAAAAATCGCACC---TATATCCATCCTATATCAAATCTCTCCATCAATTAACACTAACCTTCTTAT--ACTAATAGCCCTTACATCCGTTCTAGTAGGAGGCTGAGGCGGACTAAATCAAACTCAACTACGAAAAATCATAGCATACTCCTCCATTGCCCACATAGGCTGAATAGCCGCTATCATTACTTAT--------------------AACCCTACAATAATAGTTC--TAAACTTAACTTTATATATTCTAATAACACTATCTACCTTCATACT-ATTTATAT------TAAACTCATCCACCACGACCCT-ATCTTTATCCCACATA--TGAAACAAATTTCCCCTAATCA---CTTCCATA---ATCTTAATCTTAATACTATCCCTAGGAGGACTACCCCCATTATCTGG----CTTCATCCCCAAATGAATAATTATTCAAGAATTAACGAAAAATAACATAATTATTATTCCAACACTAATGGCTATCACCGCTCTACTTAACTTATATTTCTACCTGCGACTCACATATAGCACCGCACTTACCATATTTCCAT---CCACAAACAACATAAAAATAAAATGACAGTTCGAATACACAAAAAAGGCAACCCTATTACCCCCCTTAAT-----TATTACCTCAACTATA---CTACTCCC s galGal2.chrM 5598 649 + 16775 AAGGCTCCTCCCTAATCACTGCCCTACTACTCTCCACCCTAATAAAACTCCCCCC---AATCACACTCCTCCTCCTAACATCACAGTCTCTTAATACCACCTTACTCAC--CCTCCTAGCAATCTCCTCCACCCTAATCGGAGGCTGAATGGGCCTAAACCAAACACAAACACGAAAAATCCTAGCCTTCTCATCCATCTCCCATTTAGGATGAATAATTATAATTATCTCCTAT--------------------AACCCACAACTCACTATTC--TCACCTTCATCCTCTACACAATTATGACCTCAACTGTATTCCTATC--CCTAGCC------CAAATCAAAGTCCTAAAACTGTCAACACTACTCATCTCA--TGAACTAAAACCCCAATACTAAATGCAACTGTA---AT---ACTAACCCTCCTCTCCCTAGCTGGCCTCCCACCATTAACCGG----CTTCATGCCAAAATGACTCATTATCCAAGAACTAACCAAACAAGAAATAACCCCAATAGCCACAATCATCACAATACTATCACTCCTAAGCCTATTCTTCTACCTCCGACTTGCATACCACTCAACAATCACACTCCCCCCCAACTCATCAAACCACATAAAACTCTGA--------CGAACTAACAAAAC---CCTAAACACCCCCACCGCCATTCTAACTGCGCTATCAACCACC---CTATT--- s danRer1.chrM 5350 652 + 16596 AAGGATTAGATCTGTTGACAGGACTAATTTTGTCAACCTGACAAAAACTTGCCCC---AATAGCATTAATTATCCAAACGACCCAAACCACTGACCCTCTTATTCTTAC--ATCACTAGGAATTGCTTCCTCTCTCATTGGAGGGTGAAGCGGACTTAACCAAACCCAACTCCGAAAAATTCTAGCTTATTCATCAATTGCCCACATAGGGTGAATAATTATTGTTATCCAGTAC--------------------GCTCCGCAACTTACTCTGA--TTGCTTTAGGAACATATATCTTTATAACATCCGCGGCATTCCTTAC-TTTAAAAG------TATTATCAGCCACAAAAATTAA-CACCCTAACAACGACC--TGACCGAAAAGCCCAATCCTGG---CAGCAATT---GCTACTTTAGTTATATTATCACTGGGAGGACTTCCCCCACTGACGGG----ATTCATACCAAAATGATTAATCCTACAAGAGTTAACGAAACAAGACCTACCAGCCACAGCTACTATCATGGCGCTTACCGCCCTCCTAAGCTTATTTTTTTACCTACGTCTATGTCATGCAATAACATTAACGACTTCACCAA---ACACTATCAATTCAGCCCCTCACTGACGGGTACAAACGACCCAAA---ACTCACTACCCCTAACAATCTC-----TGTTACTGTTACTATA---GGACTTTT a score=211260.0 s hg17.chrM 5480 399 + 16571 ACCTATCTCCCC------TTTT------ATACTAA---TAATCTTATAGAAATTTAGGTTAAATA-----CAGACCAAGAGCCTTCAAAGCCCTCAGTAAGT--TGCAA--TACT--TAATTTCTGCAACAG-------CTAAGGACTGCAAAACCCCACTCTGCATCAACTGAACGCAAATCAGCCACTTTAATTAAGCTAAGCCCTT--ACTAGACCAATGGGACTTAAACCCACAAACA---CTTAG-----------TTAACAGCTAAGCACCCTAATCAACTGGCTTCAATCTACT-TCTCCCGCCGCC----GGGAAAAAAGGCGGGAGAAGCCCCGGCAGG-TTTGAAGCTGCTTCTTCGAATTTGCAATTCAATATG-A-AAA-TCACCTCGGAG---CTGGTAAAAAGAGGCCT--AACCCCTGTCTTTAGATTTACAGTCCAATGCTT---CACT s panTro1.chr3 35467243 404 - 209662276 ACCCATCTCTCC------ATTA------ATACTAACTATAA-CTTA--GAAATTTAGGTTAAATA------AGACCAAGAACCTTCAAAGCCCTTAGTAAGT-----AAGTTACTCTTAATTTCTGTAACAGA-----TCTAAACACTGCAAGACTCTATACTGCATCAACTGAACGCAAATCAACCGCTGTAATTAAGCTAAGCCCTT--ATGAGATTGGTGGAATTCAAACC-ACGAATAAAATTTAG-----------TTAACAGCTAAACACCCTAATCAACTGGCTTCAATTTACT----CCCACCGTCATTGGGGGAGAAAGGCAG-AGAAGCCCCAGCAGG-ATTGAAGCTGCTCCTTTGAATTTTCAGTTCAACATG-AGAAA-TCACCTCAGAG---CTGCTAAAAAGAGGCCTT-GACCTCTGTCTTTAGATTTACAGTCTAATGCTT----ACT s mm5.chrM 4923 390 + 16299 ACCCCTAGCCCC------CC---------AACTAA---TTA-CCTA--GAAGTTTAGGATATACT------AGTCCGCGAGCCTTCAAAGCCCTAAGAAAACA-CACAAGTT-----TAACTTCTG-------------ATAAGGACTGTAAGACTTCATCCTACATCTATTGAATGCAAATCAATTGCTTTAATTAAGCTAAGACCTC-AACTAGATTGGCAGGAATTAAACCTACGAAAA---TTTAG-----------TTAACAGCTAAATACCCTATT--ACTGGCTTCAATCTACT----TCTACCGCCGAAAAAAAAAAATGGCGGTAGAAGTCTTAGTAGA-GATTTCTCTACACCTTCGAATTTGCAATTCGACATG-A-ATA-TCACCTTAAGACCTCTGGTAAAAAGAGGATTTAAACCTCTGTGTTTAGATTTACAGTCTAATGCTT----ACT s rn3.chr14 86906642 384 - 112220682 ACTTACTTTCCC------TTCATCACCCCAACAAA---TCA-ATTA--GAAGTTTAGGATATTCT------AGTCCAAGAGCATTCAAAGCCCTAAGAAAACA-AATAAATT-----TAATTTCTG-------------ATAAGTACTGTAAGACTCTATCCTAAATCTACTGAATGCAAATCCATCTCTTTATTTAAGCTAAGACCTT-AACTATATTGGCAGGAATCAAGCCTGAGAAAA---TTTAAGAGTGAAAATTTTAAGAGTGAAATACCCTACC--TCTGAATTCAATCTAC-----CTCTTCTTCATATCAGAAAGGGGACAGGAGAAGCCTTAGTAAA-----------------------CAAAATTCCATGTC-A-TTA-TCACCTTAAAGA--TTGGTAAAAAGAGGGCTT-ACCCTTTATGTCTAGATTTCCAGTCAAATGCTT----ACT s canFam1.chrM 4926 407 + 16727 ACTAACACCTAT------ATTA------TCAGTCT---TGG-ACTA--GGAGTTTAGGTTAGACC------AGACCAAGAGCCTTCAAAGCTCTAAGCAAGTGCTACACACT-----TAACCCCTG-ATCAAATCACCTCTAAGGGCTGCAAGAATCTATCTTACATCAATTGAATGCAAATCAAACACTTTAATTAAGCTAAGCCCTC--CCTAGATTGGTGAGCTTCTACCTCACGAAAT---TTTAG-----------TTAACAGCTAAATACCCTAGT-AACTGGCTTCAATCTACCTTCTCCCGCCGCG--TAGAAAAAAAAGGCGGGAGAAGCCCCGGCGGC-GTCTAGGCTGCTTCTTTGAATTTGCAATTCAATATG-A-AAATTCACCACGGAGC--TTGGCAAAAAGAGGACTTAAACCCCTATCTTTAGATTTACAGTCTAATGCTT----TTA s galGal2.chrM 6248 382 + 16775 CCCCTTTCCCCC------CTAA------TTATTAC---CAT-ACTATAGAAACTTAGGATTAACTGTCACCAAACCAAAGGCCTTCAAAGCCTTAAATAAGA--GTTAAACT-CTCTTAGTTTCTG-CCCAA-------CTAAGACCAACAGGACATTAACCTGTATCTCCTGAATGCAAATCAGACGCTTTAATTAAGCTAAGGCCTCTACCTAGACAGATGGGCTTCGATCCCATACAAT---TTTAG-----------TTAACAGCTAAATGCCAACACCAATTGGCTTCTGCCTAC-----------------------------------AGACCCCGGCACA-CTTTAGTGTACATCAACGAGTTTGCAACTCATTATG-A-ACT-TCACTACAGAG---TCGATAAGAAGAGGAATTGAACCTCTGTAAAAAGGACTACAGCCTAACGCTTCAACACT s danRer1.chrM 6002 408 + 16596 ACCACTGACCCCAGCCATCTTA------ATATTAA---CAA-CATA--GAGACTTAGGATAACCT------AGACCAAGAGCCTTCAAAGCTCTCAGTAGAA--GTGAAAAT-CTTCTAGTCTCTG-------------ATAGGACTTACA-GACGTTACTCCGCATCTTCTAAATGCAAATCAGATATTTTAATTAAACTAAAGCCCT--ACTAGATGGGAAGGCCTCGATCCTACAAAAT---CTTAG-----------TTAACAGCTAAGCGCCCAAGCCAGCGAGCATCCATCTACT-TTTCCCGCCGTT--GAACCCGGTAAGGCGGGAAAAGCCCCGGCAGGAGGTTTACCTGCGTCTTCAGATTTGCAATCTGATATGTA-TCA-TCACCACGAGGCC-ATGGTAGAAAAAGGACTCAAACCTCTGTCCGCGGAGCTACAATCCGCCGCCTAAACACT a score=338602.0 s hg17.chrM 5879 388 + 16571 CAGCCATTTTACCTCACCCCCACTGATGTTCGCCGACCGTTGACTATTCTCTACAAACCACAAAGACATTGGAACACTATAC---CTATTATTCGGCGCATGAGCTGGAGTCCTAGGCACAGCTCTAAGCCTC--CTTATTCGAGCCGAGCTGGGCCAGCCAGGCAAC-CTTCTAGGTAACGACCACATCTACAACGTTATCGTCACAGCCCATGCATTT-GTAATAATCTTCTTC-ATAGTAATACCCATCATAATCGGAGGCTTTGGCAACTGACTAGTTCCCCTAATAATCGGTGCCCCCGATATGGCGTTTCCCCGCATAAACAACATAAGCTTCTGACTCTTACCTCCCTCTCTCCTACTCCTGC-TCGCATCTGCTATAGTGGAGGCCGGA s panTro1.chr3 35467647 387 - 209662276 CAGCCACTTTACCTTTCCCCCACCTATGTTCATCAATCGTTGATTGTTTTCAACTAACCACAAAGATATCGGAACACTATACGTGCTAT-----GGCGCCTGAACCGGGGTAGTAGGCACCGCCTTAAGCCTT--CTAATTCGAGCAGAACTCGGCCAACCAGG-AACTCTGTTAGGAGATGATCGGATCTACAATGTTATTGTTACCGCCCACGCATTTCGTTATAATTTTCTTT-ATGGTAACACTGATCATGATAGGGGTTTTTGGCAACTGGCTAGTCCCTCTGACTATTGGTTGACTCGACATGGCATTCCCCTGAATAAATAATATCAGCTTCTGGCTTTTCCCCCTATCTTTTCTACTCCTCC-TTGCGTCTTCAATATTTCAAGCCAGT s mm5.chrM 5313 377 + 16299 CAGCCATTTTACCT-----------ATGTTCATTAATCGTTGATTATTCTCAACCAATCACAAAGATATCGGAACCCTCTAT---CTACTATTCGGAGCCTGAGCGGGAATAGTGGGTACTGCACTAAGTATT--TTAATTCGAGCAGAATTAGGTCAACCAGG-TGCACTTTTAGGAGATGACCAAATTTACAATGTTATCGTAACTGCCCATGCTTTT-GTTATAATTTTCTTC-ATAGTAATACCAATAATAATTGGAGGCTTTGGAAACTGACTTGTCCCACTAATAATCGGAGCCCCAGATATAGCATTCCCACGAATAAATAATATAAGTTTTTGACTCCTACCACCATCATTTCTCCTTCTCC-TAGCATCATCAATAGTAGAAGCAGGA s rn3.chr2 24388039 379 - 258222147 CAGCTGTTCTATCT----TCTAGCCAGGCTCATTAACCTTTTATGGTTTTCAACAAACCAGACACATATTGACATACTATTT----TATTATTTTGTGCTATAACTAGAGTAGGAGCTACTGCCCTAAGACTTTATTAATCCAAGTAAAATTATGACAAGCGGG-CACATTAGTTAGTGGTAATCAAATTTACATGGGCATTGTT------TATACGTTT-TAAATAACCTCTTTTAATAGTCATGACAGATATAAGTGAAGGACTTTTAA--TTGTTAGTTCTATTAGGGACTGAAGGCCCAGGTAGAACACTCGTTCAACTCCACAAAATAAATTTCTGGCCATTTGCTTCATCAGTTTGACTTCAGCTTTGCCTCCTCAATAGTAGAAACCAGT s canFam1.chrM 5334 377 + 16727 CAGCCATTTTACCT-----------ATGTTCATTAACCGATGACTGTTCTCCACTAATCACAAGGATATTGGTACTTTATAC---TTACTATTTGGAGCATGAGCCGGTATAGTAGGCACTGCTTTGAGCCTC--CTCATCCGAGCCGAACTAGGTCAGCCCGG-TACTTTACTAGGTGACGATCAAATTTATAATGTCATCGTAACCGCCCATGCTTTC-GTAATAATCTTCTTC-ATAGTCATGCCCATCATAATTGGGGGCTTTGGAAACTGACTAGTGCCGTTAATAATTGGTGCTCCGGACATGGCATTCCCCCGAATAAATAACATGAGCTTCTGACTCCTTCCTCCATCCTTTCTTCTACTAT-TAGCATCTTCTATGGTAGAAGCAGGT s galGal2.chrM 6630 380 + 16775 CAGCCATCTTACCT--------GTGACCTTCATCAACCGATGATTATTCTCAACCAACCACAAAGACATTGGCACTCTTTAC---CTAATTTTCGGCACATGGGCGGGCATAGCCGGCACAGCACTTAGCCTT--CTAATTCGCGCAGAACTAGGACAGCCCGG-AACTCTCTTAGGAGACGATCAAATTTACAATGTAATCGTCACAGCCCATGCTTTC-GTCATAATCTTCTTT-ATAGTTATACCCATCATGATCGGTGGCTTCGGAAACTGACTAGTCCCACTTATAATCGGTGCCCCAGACATAGCATTCCCCCGCATAAATAACATAAGCTTCTGACTCCTCCCTCCCTCCTTCCTTCTCCTAC-TAGCCTCATCTACCGTAGAAGCTGGG s danRer1.chrM 6410 377 + 16596 CGGCCACCCTACCT-----------GTGACAATCACACGTTGATTTTTCTCAACTAATCATAAAGACATTGGCACCCTGTAT---CTAGTATTTGGTGCTTGAGCCGGAATAGTAGGGACCGCATTAAGCCTC--TTAATCCGAGCTGAACTTAGCCAACCAGG-AGCACTTCTTGGTGATGATCAAATCTATAATGTTATTGTTACTGCCCATGCTTTT-GTAATAATTTTCTTT-ATAGTAATACCCATTCTTATTGGGGGATTTGGAAACTGACTTGTGCCACTAATGATTGGGGCCCCCGATATGGCATTTCCCCGAATAAATAATATAAGCTTCTGACTTCTTCCACCCTCATTTCTTCTTCTAT-TAGCTTCTTCTGGAGTTGAAGCAGGA a score=20468.0 s hg17.chrM 6267 22 + 16571 GCAGGAACAGGTTGAACAGTCT s panTro1.chr3 35468034 22 - 209662276 GCTGGAACCAGCTGGACAGTTT s mm5.chrM 5690 22 + 16299 GCAGGAACAGGATGAACAGTCT s canFam1.chrM 5711 22 + 16727 GCAGGAACGGGATGAACCGTAT s galGal2.chrM 7010 22 + 16775 GCCGGCACAGGATGGACAGTTT s danRer1.chrM 6787 22 + 16596 GCTGGAACAGGATGAACAGTTT a score=598760.0 s hg17.chrM 6289 707 + 16571 ACCCTCCCTTAGCAGGGAACTACTCCCACCCTGG----------AGCCTCCGTAGACCTAACCATCTTCTCCTTACACCTAGCAGGTGTCTCCT--CTATCTTAGGGGCCATCAATTTCATCACAACAATTATCAATATAAAACCCCCTGCCATA-ACCCA-ATACCAAACGCCCCTCTTCGTCTGATCCGTCCTAATCACAGCAGTCCTACTTCTCCTATCTCTCCCAGTCCTAG----CTGCTGGCATCACTATACTACTAACAGACCGCAACCTCAACACCACCTTCTTCGACCCCGCCGGAGGAGGAGACCCCATTCTATACCAACACCTATTCTGATTTTTCGGTCACCCTGAAGTTTATATTCTTATCCTACCAGGCTTCGGAATAATCTCCCATATTGTAACTTACTACTCCGGAAAAAAAGAACC-ATTTGGATACATAGGTATGGTCTGAGCTATGATATCAATTGGCTTCCTAGGGTTTATCGTGTGAGCACACCATATATTTACAGTAGGAATAGACGTAGACACACGAGCATATTTCACCTCCGCTACCATAATCATCGCTATCCCCACCGGCGTCAAAGTATTTAGCTGACTCGCCACACTCCACGGAAGCAATATGAAATGATCTGCTGCAGTGCTCTGAGCCCTAGGATTCATCTTTCTTTTCACCGTAGGTGGCCTGACTGGCATTGTATTAGCAAACTCATCACTAGAC s panTro1.chr3 35468056 706 - 209662276 GTCCCCCTTTAGCAGGAAAC----------CTAGCACATGCAGAAGCCTCTGTGGCTCTGACCATCTTCTCGTTCCACTTAGCAGGTGTTTTTTTTCTATTTTAGGGGCCattaattttattat--taattattaaCATAAAACCCCCAACCATA-TCCCA-GTATCCAACACCGCTTTTCGTCTGCTCAGTCCGCATTATGGCAGTCCT-CTACTCCTTTCCCTCCCAGTCCTAG----CCGCCGGCATTGCTATGCTATTAACTGACCATAACCTCAACAGTACTTCTTTTGACCCTGCTTGTGG-GGTGACCCCATCTTGTTCCAACATTTATTCTGATTCTTTGGTCGCCCTGAAGTCTACATCCTTATCCTACCGGGCTTCGGGATAATCTCCCACATCGCAACATATTATTCTGGAAAAAAGGAACCCATTTGTGTACATGGGCATAGTATGAGCCATGATATCAGTTGGCATCTTTGGATTTATCGTATGGGCTCACCATATATTTACAGTAGGAATAGACATAGACACACTAGCATACTTCACCTCCACTACCATAATAATTGCCATCCCTACTGGCATCAAGGTCTTTAGCTGATTAGCTACCCTGCACCGCGGTAACATCAGATGATCTCCCGCAATATTCTGAGCCCTAGGATTCATTTTCCTTTACAGAGTAGGAGGTTTAACCGACATCGTACTAGCTAATTCATCACTAGAT s mm5.chrM 5712 707 + 16299 ACCCACCTCTAGCCGGAAAT----------CTAGCCCATGCAGGAGCATCAGTAGACCTAACAATTTTCTCCCTTCATTTAGCTGGAGTGTCAT--CTATTTTAGGTGCAATTAATTTTATTACCACTATTATCAACATGAAACCCCCAGCCATA-ACACA-GTATCAAACTCCACTATTTGTCTGATCCGTACTTATTACAGCCGTACTGCTCCTATTATCACTACCAGTGCTAG----CCGCAGGCATTACTATACTACTAACAGACCGCAACCTAAACACAACTTTCTTTGATCCCGCTGGAGGAGGGGACCCAATTCTCTACCAGCATCTGTTCTGATTCTTTGGGCACCCAGAAGTTTATATTCTTATCCTCCCAGGATTTGGAATTATTTCACATGTAGTTACTTACTACTCCGGAAAAAAAGAACC-TTTCGGCTATATAGGAATAGTATGAGCAATAATGTCTATTGGCTTTCTAGGCTTTATTGTATGAGCCCACCACATATTCACAGTAGGATTAGATGTAGACACACGAGCTTACTTTACATCAGCCACTATAATTATCGCAATTCCTACCGGTGTCAAAGTATTTAGCTGACTTGCAACCCTACACGGAGGTAATATTAAATGATCTCCAGCTATACTATGAGCCTTAGGCTTTATTTTCTTATTTACAGTTGGTGGTCTAACCGGAATTGTTTTATCCAACTCATCCCTTGAC s rn3.chr2 24388832 523 - 258222147 ATTTACCATTAACCAGAAAT----------CCTGCAGCGACAGGGGCTTCTGTAATTATTGCCATTTTCATGTTACTTTTAGAAAATGTTTCTT--CAGTTTTAAGAATTACTAATTACACCATAACATCCATGAAGATAATAACACCAGCTACAGGCACAGGTACCA---------------CTGAACAGCATTAATTACAGCTGTACTTTTACTCTTAGCTTATCTAATACTAGGACCTAGCTAGCGTCATCATGCTGTACACA-ACAATACTCTTAACATCTCTTTCTTCAATCCAGCGTGAGAAAAT--CCCACTGCTAGATCAATCATGATTCTTATCTTTTGGG-ATCCAGAAACACACGTTATCATCTGATCCTGACTAGGAATGATCTTGCATAGTGTGACA-ACTATTCTTGATCCAAAGAGTC-AAT-GGTTACATGGGG--TATCTGAGCCAGGATAGCGGTTGGTTTGTATGGCTTTCCTGCATGGGTCTACCATATTTTCGCAGTGGCA--------------------------------------------------CATTCC-----------------------------------------------------------------CATTATCCTCATTCATAGGCATGATCTTCTC---------------------------------------------------- s canFam1.chrM 5733 707 + 16727 ACCCCCCACTGGCTGGCAAT----------CTGGCCCATGCAGGAGCATCCGTTGACCTTACAATTTTCTCCTTACACTTAGCCGGAGTCTCTT--CTATTTTAGGGGCAATTAATTTCATCACTACTATTATCAACATAAAACCCCCTGCAATA-TCCCA-GTATCAAACTCCCCTGTTTGTATGATCAGTACTAATTACAGCAGTTCTACTCTTACTATCCCTGCCTGTACTGG----CTGCTGGAATTACAATACTTTTAACAGACCGGAATCTTAATACAACATTTTTTGATCCCGCTGGAGGAGGAGACCCTATCCTATATCAACACCTATTCTGATTCTTCGGACATCCTGAAGTTTACATTCTTATCCTGCCCGGATTCGGAATAATTTCTCACATTGTCACTTACTACTCAGGGAAAAAAGAGCC-TTTCGGTTATATAGGAATAGTATGAGCAATAATATCTATTGGGTTTTTAGGCTTTATCGTATGAGCTCACCATATGTTTACCGTAGGAATAGATGTAGACACACGAGCGTACTTTACGTCCGCCACTATAATTATCGCTATTCCAACGGGAGTAAAAGTATTTAGTTGACTGGCAACACTTCATGGAGGCAATATTAAATGATCTCCAGCTATGCTATGAGCTTTAGGGTTTATTTTCTTATTTACAGTAGGCGGGTTAACAGGTATTGTCCTAGCTAATTCGTCCTTAGAC s galGal2.chrM 7032 704 + 16775 ACCCCCCTTTAGCCGGCAAC----------CTAGCCCACGCTGGCGCATCAGTAGACCTAGCCATCTT-TCATTAC--TTAGCAGGTGTTTCCT--CCATTCTAGGAGCCATCAACTTTATCACTACCATCATCAACATAAAACCCCCCGCACTG-TCACA-ATACCAAACACCCCTATTCGTATGATCCGTCCTCATTACTGCCATCCTACTACTCCTCTCCTTACCCGTCCTAG----CAGCTGGGATTACCATACTACTTACCGACCGCAACCTTAACACCACATTCTTCGACCCAGCTGGAGGAGGAGACCCAATCCTATACCAACACCTATTCTGATTCTTCGGTCACCCCGAAGTTTACATCCTCATCCTCCCAGGTTTCGGAATAATTTCCCACGTAGTAGCATACTATGCAGGAAAAAAAGAACC-ATTCGGATACATAGGAATAGTCTGAGCCATACTGTCAATCGGATTCCTTGGCTTCATTGTATGAGCCCACCATATATTCACAGTCCGAATGGACGTAGACACCCGAGCCTACTTTACATCAGCCACAATAATCATCGCCATCCCAACTGGTATTAAAGTCTTCAGCTGACTAGCAACCCTGCACGGAGGAACAATTAAATGAGACCCCCCTATGCTATGAGCCCTAGGATTCATCTTCCTCTTCACTATCGGAGGCCTAACGGGAATCGTCCTTGCTAACTCATCACTAGAT s danRer1.chrM 6809 707 + 16596 ATCCACCTCTTGCAGGCAAC----------CTTGCCCATGCAGGAGCATCTGTTGATCTAACAATTTTTTCACTACACTTAGCAGGTGTTTCAT--CTATTCTTGGAGCAATTAATTTTATTACTACTACAATTAACATGAAGCCACCAACTATC-TCTCA-GTATCAAACTCCATTATTTGTATGAGCTGTCTTAGTTACAGCTGTACTACTTCTTTTATCTTTACCAGTGTTAG----CTGCCGGAATTACAATACTTCTTACAGACCGAAATCTTAACACAACGTTCTTTGACCCGGCAGGAGGGGGAGATCCAATTCTTTATCAACACTTATTTTGATTCTTTGGCCACCCAGAAGTCTACATTCTTATTTTACCAGGATTCGGCATTATCTCCCATGTTGTAGCATACTACGCAGGGAAAAAAGAACC-ATTCGGGTATATAGGAATAGTATGAGCTATAATGGCTATTGGTCTCTTAGGTTTTATTGTATGAGCCCATCACATATTCACTGTAGGAATGGATGTAGACACCCGAGCATACTTCACATCCGCCACAATGATTATTGCTATTCCAACTGGTGTAAAAGTATTTAGCTGATTAGCCACTCTCCACGGAGGAGCTATTAAATGAGAAACCCCTATACTATGGGCACTAGGATTTATTTTCTTATTTACAGTAGGAGGGTTAACCGGAATCGTTTTAGCCAACTCATCATTAGAC a score=102002.0 s hg17.chrM 6790 88 + 16571 GAATAGACGTAGACACACGAGCATATTTCACCTCCGCTACCATAATCATCGCTATCCCCACCGGCGTCAAAGTATTTAGCTGACTCGC s panTro1.chr3 35468556 88 - 209662276 GAATAGACATAGACACACTAGCATACTTCACCTCCACTACCATAATAATTGCCATCCCTACTGGCATCAAGGTCTTTAGCTGATTAGC s mm5.chrM 6213 88 + 16299 GATTAGATGTAGACACACGAGCTTACTTTACATCAGCCACTATAATTATCGCAATTCCTACCGGTGTCAAAGTATTTAGCTGACTTGC s rn3.chr14 86907881 83 - 112220682 GCCTTGATGGAGAAACATGAGATAACTTTACGTCAGCCATTATTATTATTGTAATTCCTACTGCTGC-----TATTTAGCTGACTTAC s canFam1.chrM 6234 88 + 16727 GAATAGATGTAGACACACGAGCGTACTTTACGTCCGCCACTATAATTATCGCTATTCCAACGGGAGTAAAAGTATTTAGTTGACTGGC s galGal2.chrM 7530 88 + 16775 GAATGGACGTAGACACCCGAGCCTACTTTACATCAGCCACAATAATCATCGCCATCCCAACTGGTATTAAAGTCTTCAGCTGACTAGC s danRer1.chrM 7310 88 + 16596 GAATGGATGTAGACACCCGAGCATACTTCACATCCGCCACAATGATTATTGCTATTCCAACTGGTGTAAAAGTATTTAGCTGATTAGC a score=448969.0 s hg17.chrM 6996 444 + 16571 ATCGTACTACACGACACGTACTACGTTGTAGCTCACTTCCACTATGTCCTATCAATAGGAGCTGTATTTGCCATCATAGGAGGCTTCATTCACTGATTTCCCCTATTCTCAGGCTACACCCTAGACCAAACCTACGCCAAAATCCATTTCACTATCATATTCATCGGCGTAA---ATCTAACTTTCTTCCC---ACAACACTTTCTCGGCCTATCCGGAATGCCCCGACGTTACTCGGACTACCCCGATGCATACACCACATGAAACATCCTATCATCTGTAGGCTCATTCATTTCTCTAACAGCAGTAATATTAAT----------------AATTTTCATGATTTGAGAAGCCTTCGCTTCGAAGCGAAAAGTCCTAATAGTAGAAGAACCCTCCATAAACCTGGAGTGACTATATGGATGCCCCCCACCCTACCACACATTCGAAG----AACCCGTATACATAAAA- s panTro1.chr3 35468762 441 - 209662276 ATTGTCTTACACGACACATACTATGTTGTAGCCCATTTCCACTACGTTCTATCAATAGGAGCAATATTTGCCATTACAGGAGGCTTTGTCCACTGATTCCCCCTATTTTCAGGTTATACATTTAATCAGACCTATGCTAAAATCCACTTCACCATTATATTCATAGGTGTTA---ACTTAACCTTTTTTCC---ACAGCACTTCCTCAGCCTATCGGGTATGCCTCGACATTACTCCAATTACTCTGATGTGTACACCATATGAAATATTGTCTCATCCATAGGCTCATTTATCTCACTAACAGCTGTTATACTAAT----------------AATCGTTATGATCTGAGAGGCCTTTGCTTCAAAATGAAAAGT----ACAATTGCACAATCATCTACTAATTTAGAGTGACTTTACAGCTGTCCACCACCTTACCACACATTTGAAGAGCCAACCTGTGTG---AAAA- s mm5.chrM 6419 444 + 16299 ATCGTGCTTCACGATACATACTATGTAGTAGCCCATTTCCACTATGTTCTATCAATGGGAGCAGTGTTTGCTATCATAGCAGGATTTGTTCACTGATTCCCATTATTTTCAGGCTTCACCCTAGATGACACATGAGCAAAAGCCCACTTCGCCATCATATTCGTAGGAGTAA---ACATAACATTCTTCCC---TCAACATTTCCTGGGCCTTTCAGGAATACCACGACGCTACTCAGACTACCCAGATGCTTACACCACATGAAACACTGTCTCTTCTATAGGATCATTTATTTCACTAACAGCTGTTCTCATCAT----------------GATCTTTATAATTTGAGAGGCCTTTGCTTCAAAACGAGAAGTAATATCAGTATCGTATGCTTCAACAAATTTAGAATGACTTCATGGCTGCCCTCCACCATATCACACATTCGAGGAACCAACCTATGTA---AAA-- s rn3.chr2 24389355 357 - 258222147 --------------------------------------------------------------------------CATTGTAGATTTCTTTCACTGATTTCCACTCTTTTGAGGTGATGCTCT--ATGAAAACTAAACAAAAAATCATTTTACAATTAAATTTGTAGGTGTTATCCGTTTAAATTTTCTGGCTAATCAATAATTTCACATTCTCT--------------TGCTATTCTTAACAGTC--------ATAGCCCATAAAATCTCAACTCATTGACAAATTCATTTATTAAACTAACAGTAGTAGTGCTAACTCTGTTAGTAGTGCTAATTCTTCATAACTTTCAGTGTTTATGCTTTAAAATAGGAAGTC---TCAGCAGAACATTCAACCACAAATCTTAAATGATTTTATTTCTAGCC--------ACCAGACATTCAAAGAACTTTCTCACGGA---AAA-- s canFam1.chrM 6440 444 + 16727 ATCGTTCTTCATGATACATATTATGTTGTGGCTCATTTTCACTATGTGCTTTCAATAGGAGCAGTTTTTGCCATTATGGGAGGATTTGCCCACTGATTCCCTTTATTCTCAGGTTATACTCTTAACGATACTTGAGCAAAGATTCACTTTACAATTATGTTTGTGGGAGTAA---ATATAACTTTCTTCCC---TCAACATTTCCTAGGTTTATCTGGAATACCTCGTCGATACTCTGACTACCCAGATGCATATACTACCTGAAATACCGTCTCCTCTATAGGATCGTTTATCTCGCTTACAGCGGTGATGCTTAT----------------AATTTTTATGATCTGGGAAGCCTTTGCATCCAAACGAGAAGTTGCTATAGTAGAACTTACTACAACTAACATTGAGTGACTACATGGATGTCCCCCTCCATACCACACGTTCGAAGAACCTACATATGTG---ATC-- s galGal2.chrM 7736 444 + 16775 ATTGCCCTTCATGACACCTACTATGTAGTCGCCCACTTCCACTATGTCCTCTCAATGGGGGCAGTTTTTGCCATTCTAGCAGGATTTACCCACTGATTTCCCCTCTTCACAGGCTTTACCCTACACCCATCATGAACCAAGGCACATTTCGGAGTAATATTTACCGGAGTTA---ACCTAACCTTTTTCCC---CCAACATTTCCTGGGCCTAGCTGGAATACCCCGACGATACTCAGATTACCCAGACGCCTACACACTATGAAACACACTATCCTCAATCGGCTCCTTAATTTCAATAACAGCCGTAATCATACT----------------CATATTCATCGTCTGAGAAGCCTTCTCAGCAAAACGAAAAGTACTCCAACCCGAATTAACTGCCACTAATATCGAATGAATTCATGGCTGCCCACCCCCATACCACACCTTCGAAGAACCAGCCTTTGTA---CAA-- s fr1.chrUn 326222607 444 + 349519338 ATCGTATTACACGACACCTACTACGTAGTTGCCCATTTCCACTACGTCCTCTCCATGGGTGCTGTATTTGCAATTATGGGTGCATTCGTACACTGATTCCCACTATTTTCAGGATACACACTCCACAGCACTTGAACTAAAATCCACTTCGGAGTAATGTTCATTGGTGTCA---ACCTAACCTTCTTCCC---TCAACACTTCCTTGGTCTAGCTGGAATACCTCGACGATACTCCGACTACCCCGACGCCTACGCCCTATGAAACTCCGTCTCCTCAATTGGCTCAATAGTCTCTCTAGTGGCAGTAATTATGTT----------------CCTCTTTATCCTCTGAGAGGCCTTCACCGCTAAGCGAGAAGTCCAATCAGTTGAACTAACAATGACAAATGTAGAATGACTACACGGGTGCCCTCCTCCTTACCACACATTCGAAGAGCCCGCCTTTGTC---CAA-- s danRer1.chrM 7516 445 + 16596 ATCGTACTACATGACACATACTACGTAGTAGCACACTTTCACTATGTTCTTTCAATAGGAGCTGTATTCGCTATTATAGCAGGCTTTGTTCACTGATTCCCACTATTTACAGGCTACACCCTAAACAGTGTATGAACAAAAATCCATTTCGGGGTTATATTTATCGGAGTAA---ATCTCACATTCTTCCC---ACAACATTTCCTAGGTTTAGCAGGAATACCACGACGGTACTCTGACTACCCAGACGCCTATGCACTCTGAAATACAGTATCTTCTATTGGGTCACTAATTTCTTTAGTAGCAGTAATCATGTT----------------CTTATTTATCTTATGAGAAGCCTTTACCGCCAAACGAGAAGTTCTGTCAGTTGAATTGACCGCAACAAATGTAGAATGATTACACGGCTGCCCTCCCCCCTACCACACATTTGAGGAGCCAGCATTCGTT---CAA-A a score=81951.0 s hg17.chrM 7029 51 + 16571 CACTTCCACTATGTCCTATCAATAGGAGCTGTATTTGCCATCATAGGAGGC s panTro1.chr3 35468795 51 - 209662276 CATTTCCACTACGTTCTATCAATAGGAGCAATATTTGCCATTACAGGAGGC s mm5.chrM 6452 51 + 16299 CATTTCCACTATGTTCTATCAATGGGAGCAGTGTTTGCTATCATAGCAGGA s rn3.chrUn 51520592 51 + 75822765 CACTTCTACTAGGTACTGTCTATAGGAGCGGCACTCGCTATTACAGCTGGG s canFam1.chrM 6473 51 + 16727 CATTTTCACTATGTGCTTTCAATAGGAGCAGTTTTTGCCATTATGGGAGGA s galGal2.chrM 7769 51 + 16775 CACTTCCACTATGTCCTCTCAATGGGGGCAGTTTTTGCCATTCTAGCAGGA s fr1.chrUn 326222640 51 + 349519338 CATTTCCACTACGTCCTCTCCATGGGTGCTGTATTTGCAATTATGGGTGCA s danRer1.chrM 7549 51 + 16596 CACTTTCACTATGTTCTTTCAATAGGAGCTGTATTCGCTATTATAGCAGGC a score=-1119.0 s hg17.chrM 7440 9 + 16571 TCTAGACAa s panTro1.chr3 35469203 9 - 209662276 CCTAAgtga s rn3.chr2 24389713 9 - 258222147 CTTAAATGA s canFam1.chrM 6884 9 + 16727 CAAAAAtaa s galGal2.chrM 8181 8 + 16775 TGCAAGAA- s fr1.chrUn 326223060 9 + 349519338 TCTATCCGA s danRer1.chrM 7961 9 + 16596 TTCAATCAA a score=0.0 s hg17.chrM 7449 66 + 16571 aaaaggaaggaatcgaaccccccaaagctggtttcaagccaaccccatggcctccatgactttttc a score=14522.0 s hg17.chrM 7449 66 + 16571 aaaaggaaggaatcgaaccccccaaagctggtttcaagccaaccccatggcctccatgactttttc s panTro1.chr3 35469212 65 - 209662276 gaaaggaaggaatcaaaactccagaaactggtttcaagccagtccaataacc-ccatgactctctc s rn3.chr2 24389722 59 - 258222147 GAAACAA---GATTAAACCCCTATA----GGCTTCAAGTCAGTCCCATAAGCATCGTTATTTATCC s canFam1.chrM 6893 66 + 16727 gaaaggaaggaatcgaaccccctaaaattggtttcaagccaatgtcataaccattatgtctttctc a score=0.0 s hg17.chrM 7449 66 + 16571 aaaaggaaggaatcgaaccccccaaagctggtttcaagccaaccccatggcctccatgactttttc a score=-609.0 s hg17.chrM 7515 1 + 16571 ---A s panTro1.chr3 35469277 1 - 209662276 ---G s mm5.chrM 6938 1 + 16299 ---A s canFam1.chrM 6962 1 + 16727 ---C s galGal2.chrM 8189 1 + 16775 ---A s fr1.chrUn 326223069 4 + 349519338 GAAA a score=172785.0 s hg17.chrM 7516 230 + 16571 AAAAG--------------------------------------------------------------------GTATTAGAAAAACC---ATTTCATAACTTTGTCAAAGTTAAATTATAGGC-TAA-A-TCCTATATATCTTA------------ATGG-CACATGCAGCGCAAGTAGGTCTACAAGACGCTACTTCCCCTATCATAGAAGAGCTTATCACCTTTCATGATCACGCCCTCATAATCATTTTCCTTATCTGCTTCCTAGTCCTGTATGCCCTTTTCCTAACACTCACAACAAAACTAACTAA-----TACTA s panTro1.chr3 35469278 230 - 209662276 ATAAG--------------------------------------------------------------------ATATTAGTAAAATT---ATTCCATAACTTTGTCAAAGTTAGTTTATAGGT-TAA-A-TCCTATATGTCTTA------------ATGG-CTCATGCAGTTCAATTAGGACTTCAAGATGCTACATCCCTTATTATAGAAGAACTACTCACTTTCCATGACCACACTCTTACAATTATTTTCCTAATTAGTTCCCTAGTCCTATACATTATTTCCCTAATATTCACAACAAAATTAACTCA-----TACTA s mm5.chrM 6939 233 + 16299 ATAAG--------------------------------------------------------------------ATATTAGTAAAATC--AATTACATAACTTTGTCAAAGTTAAATTATAGAT-CAATA-ATCTATATATCTTA---T--------ATGG-CCTACCCATTCCAACTTGGTCTACAAGACGCCACATCCCCTATTATAGAAGAGCTAATAAATTTCCATGATCACACACTAATAATTGTTTTCCTAATTAGCTCCTTAGTCCTCTATATCATCTCGCTAATATTAACAACAAAACTAACACA-----TACAA s rn3.chr2 24389781 236 - 258222147 ATAAG-------------------------------------------------------------TTAT---GCATTAGAAATAGT---ATTATGTTACTTGGTCAGCATTAA-TTATAGTTATAA-A-TCATTTTAGTCTTC------------TTGGATATATCCATTCCAATTAGAATTTTAAGATTTCATATCATCTA--GTAAAAAATTTCCCAGGCTTGCATGAGAACATATTAATAAATGTAAT--TTAATAACTCTCTAGTCTGTTATGTTATTCTGTTGGTACCAATAACAAAATCAACTTACAAAGTACTA s canFam1.chrM 6963 230 + 16727 AGGAG--------------------------------------------------------------------GTATTAGTAAAAC----ATTACATGACTTTGTCAAAGTTAAATTATAGGT-GAA-ACCCCTATATATCTCT------------ATGG-CGTACCCATTTCAACTCGGATTACAGGACGCAACCTCCCCTATTATAGAGGAGCTACTTCATTTTCATGACCATACACTAATAATTGTATTCTTAATCAGTTCTTTAGTTCTCTATATCATTTCACTAATATTGACTACAAAATTAACCCA-----TACAA s galGal2.chrM 8190 297 + 16775 GGAAGGAATCGAACCCTCACATGTTGGTTTCAAGCCAACCGCATCAAACCACTTAATGCTTCTTTCTTATGAGACGTTAGTAAACCA---ATTACATAGACCTGTCAAGACTAAATCACAGGTGCAA-A-CCCTGTACATCTCA---T--------ATGG-CCAACCACTCCCAACTAGGCTTTCAAGACGCCTCATCCCCCATCATAGAAGAGCTCGTTGAATTCCACGACCACGCCCTGATAGTCGCACTAGCAATTTGCAGCTTAGTACTCTACCTTCTAACTCTTATACTTATAGAAAAACTATCATC-----AA--- s fr1.chrUn 326223073 305 + 349519338 GGGAGGAATCGAACCCCCGTAAACTGGTTTCAAGCCAGCTACAAAACCACTCTGTCACTTTCTTCATAAG---ACTCTAGTAAAATGGCAATTACACTACTTTGTCAAGGTAGAATTGTGGGT-TAA-ACCCCCACGTGTCTTA---T---TATTAATGG-CACATCCTTCACAACTAGGGTTTCAAGATGCAGCTTCACCAGTAATAGAAGAACTCCTTCACTTCCACGACCATGCTCTAATAATCGTATTCCTTATTAGCACATTAGTACTTTACATTATTGTTGCTATAGTCTCCACCAAACTAACTAA-----CAAGT s danRer1.chrM 8046 243 + 16596 ATAAG--------------------------------------------------------------------ACATTAGCAAAAAC---ATTACACCACTTTGTCAAGGTGAAATTACAAGT-TAA-AACCTTGTATGTCTTAACCTAAATTCTAATGG-CACACCCTGCACAACTAGGATTCCAAGACGCAGCATCACCTGTAATAGAAGAACTTTTATGTTTTCACGACCATGCTTTAATAATTGTATTTTTAATCAGCACCTTAGTTCTATACATTATCATCGCAATAGTGTCAACCAAACTAACGAA-----TAAAT a score=69426.0 s hg17.chrM 7746 69 + 16571 ACATCTCAGACGCTCAGGAAATAGAAACCGTCTGAACTATCCTGCCCGCCATCATCCTAGTCCTCATCG s panTro1.chr3 35469508 69 - 209662276 GCACCATAGATGCCTAAGAAATCGAGACTGTGTGAACTATTTTGCTTGCCATTATCTTAATTTTAATTG s mm5.chrM 7172 69 + 16299 GCACAATAGATGCACAAGAAGTTGAAACCATTTGAACTATTCTACCAGCTGTAATCCTTATCATAATTG s canFam1.chrM 7193 69 + 16727 GCACAATAGACGCACAAGAAGTGGAAACAGTATGAACCATTCTACCCGCCATTATCCTAATCCTAATCG s galGal2.chrM 8487 69 + 16775 ACACCGTAGATGCCCAAGAAGTTGAACTAATCTGAACCATCCTACCCGCTATTGTCCTAGTCCTGCTTG s fr1.chrUn 326223378 69 + 349519338 ACATTCTAGACTCTCAAGAGATTGAAATTATCTGAACTATCCTACCAGCTATTATTCTTATCCTCATTG s danRer1.chrM 8289 69 + 16596 TTATTCTAGATTCCCAAGAAATCGAAATCGTATGAACAGTCCTTCCGGCCATCATTCTTATTTTGATTG a score=5283.0 s hg17.chrM 7815 6 + 16571 CCCTCC s panTro1.chr3 35469577 6 - 209662276 CCCTCC s mm5.chrM 7241 6 + 16299 CTCTCC s canFam1.chrM 7262 6 + 16727 CTCTAC s galGal2.chrM 8556 6 + 16775 CCCTCC s danRer1.chrM 8358 6 + 16596 CTTTAC a score=83513.0 s hg17.chrM 7821 93 + 16571 CATCCCTACGCATCCTTTACATAACAGACGAGGTCAACGATCCCTCCCTTACCATCAAATCAATTGGCCACCAATGGTACTGAACCTACGA--GT s panTro1.chr3 35469583 95 - 209662276 CATCCCTACATATTCTGTAAATAACAGATGAAATTAACAACCCTGCTCTTACAGTCAAAGCAATTGGCCACCAATAATATTGAAACTATGAATGT s mm5.chrM 7247 93 + 16299 CCTCTCTACGCATTCTATATATAATAGACGAAATCAACAACCCCGTATTAACCGTTAAAACCATAGGGCACCAATGATACTGAAGCTACGA--AT s rn3.chr2 24391128 92 - 258222147 CTTTTCTGTAAATGCTATACATGATGTATGAAATTAATAATTCTTTAATAAAC-TAAAAACTTCAAGCTATCTATAGTACTAAAGTCATGA--AT s canFam1.chrM 7268 93 + 16727 CTTCCCTCCGAATCCTTTATATAATGGACGAAATTAATAACCCCTCTTTAACCGTGAAAACAATAGGCCACCAATGATACTGAAGCTATGA--AT s galGal2.chrM 8562 93 + 16775 CCTCCCTCCAAATCCTCTACATAATAGACGAAATCGACGAACCTGATCTCACCCTAAAAGCCATCGGACACCAATGATACTGAACCTATGA--AT s danRer1.chrM 8364 93 + 16596 CATCACTTCGAATTTTATACCTTATAGATGAAATTAATGACCCCCACGTTACTATTAAAGCCGTAGGACATCAATGGTACTGAAGCTACGA--AT a score=322789.0 s hg17.chrM 7914 535 + 16571 ACACCGACTACGGCGGACTAATCTTCAACTCCTACATACTTCCCCCATTATTCC-----------TAGAACCAGGCGACCTGCGACTCCTTGACGTTGACAATCGAGTAGTACTCCCGATTGAAGCCCCCATTCGTATAATAATTACATCACAAGACGTCTTGCACTCATGAGCTGTCCCCACATTAGGC---TTAAAAACAGATGCAATTCCCGGACGTCTAAACCAAACCACTTTCACCGCTACACGACCGGGGGTATACTACGGTCAATGCTCTGAAATCTGTGGAGCAAACCACAGTTTCATGCCCATCGTCCTAGAATTAATTCCCCTAAAAATCTTTGAAATAGGGCCCGTATTTACCCTATAGCACCCCCTCTACCCCCTCTAGAGCCCACTGTAAAGCTAAC------TTAGCATTAACCTTTTAAGTTAAAGATTAAGAGAACCAACACCTCTTTACAGTGAAATGCCCCAACTAAATACTACCGTATGGCCC------------------ACCATAATTACCCCCATACTCCTTACACTATTCCTCATCACCCAACTAAAAAT- s panTro1.chr3 35469678 508 - 209662276 ACA--GACTATGAAGAATTAGGCTTCGATTCTTATATA-----------ATTCCAACAGCAGACTTAAAGCCAGGAGAACTTCAACTCCTCAAAGTTGATAACCAAACAATTCTCCCAATAGATATCCCCATCCGTACATTAATCTCATCTGAAGATGTCCTGCACTCATGAACTATCCCCTCATTGGGC---CTGAAAAGGGATGCAATCCCTGGATG-CTAAATCAAACCACCCTAACTGCTACATGACCAGGCCTTTACTATGGACAGTGCTCAGAAATTTGTGGGTCCAACCACAGTGTTATACCTATTGTCCTAGAATTAACCCCCTTAAAATGCTTCGAAACCTGATCCATGTCCACACTATAATA----------------------TCACTGTAAAGCTATC-------TAGCATTAAACTTTTAAGTTAAAGACTGAGCGGATCTACACCTCTCTGCAGTG-AATGCCTCAACTAGATACTTCCACATAATCCATTGTCATTCTGTCAATAACCATAA--------------CTT----TATTCTCCATTATTCAGTTAAAATT- s mm5.chrM 7340 508 + 16299 ATACTGACTATGAAGACCTATGCTTTGATTCATATATAATCCCAACAAACGACC-----------TAAAACCTGGTGAACTACGACTGCTAGAAGTTGATAACCGAGTCGTTCTGCCAATAGAACTTCCAATCCGTATATTAATTTCATCTGAAGACGTCCTCCACTCATGAGCAGTCCCCTCCCTAGGA---CTTAAAACTGATGCCATCCCAGGCCGACTAAATCAAGCAACAGTAACATCAAACCGACCAGGGTTATTCTATGGCCAATGCTCTGAAATTTGTGGATCTAACCATAGCTTTATGCCCATTGTCCTAGAAATGGTTCCACTAAAATATTTCGAAAACTGATCTGCTTCAATAATTTAATT----------------------TCACTATGAAGCTAA--------GAGCGTTAACCTTTTAAGTTAAAGTTAGAG---ACCTTAAAATCTCCATAGTGATATGCCACAACTAGATACATCAACATGATTT------------------ATCACAATTATCTCATCAATAATTACCCTATTTATCTTATTTCAACTAAAAGT- s rn3.chr2 24391220 461 - 258222147 ATATAGAATAT--TGACCTATCTATTTATTTCTATGTAATTCCTATAATTGAAC-----------TTAACTCAGAAAAGCTAGAGCTGCTAAAAATGAAGAATTACGTAATAAAACCTATATAGATC----TTCATATATTTATCTTAT----AAGTGTCT----CTCCAGAGCTTTCATCT--TTGGGCCTACTAAAAGCAAGTATAATTCCAGGACA-------GATGCAACTCTAATATCCACAAGACTAGATATGTGATGCCAACAATAATCAGAAATTTAAGGATGTAACTACAGCCTTATATAGGTTATACTTAAATTAATTCCAATTAAGTAGCTTGAGATTGAATTAGTATCAATAGTACAATG----------------------TTATTCTAAGTTTAA--------CACCATTGACC-TTTAAGT--AATAATGAG------TAAAATATTTCATAATT-------TCAATCTGATCTATTAGTA----CT------------------ATTGTAA-TATCT--------GTAGCACTATTTCTC-TTATTCAATTAACAAT- s canFam1.chrM 7361 524 + 16727 ATACTGACTATGAAGACTTAAACTTTGACTCCTACATAATCCCAACACAAGAAT-----------TAAAGCCAGGAGAACTCCGACTATTAGAAGTAGACAACCGAGTTGTCCTCCCAATAGAAATAACCATCCGAATACTTATCTCTTCAGAAGACGTTTTGCATTCATGAGCCGTTCCATCACTAGGT---CTAAAAACTGACGCTATTCCAGGACGACTAAACCAAACCACCCTTATAGCCATACGACCAGGACTGTACTATGGCCAGTGCTCTGAAATCTGCGGATCTAACCACAGCTTTATACCCATTGTTCTTGAAATAGTCCCCCTATCTTACTTTGAGACCTGATCTGCCTTAATAGTATAACCTAGACTAGATCTAC--------TCATTAAGAAGCTATA-------AAGCATTAACCTTTTAAGTTAAAGACTGGG--AGTTTTAACCTCTCCTTAATGAAATGCCACAGCTAGATACATCCACCTGATTT------------------ATTATAATCTTTTCAATATTTCTCACCCTCTTCATCCTATTTCAACTAAAAAT- s galGal2.chrM 8655 498 + 16775 ACACAGACTTCAAGGACCTCTCATTTGACTCCTACATAACCCCAACAACAGACC-----------TCCCCCTAGGCCACTTCCGCCTACTAGAAGTCGACCATCGCATTGTAATCCCCATAGAATCCCCCATTCGAGTAATCATCACCGCTGATGACGTCCTCCACTCATGAGCCGTACCCGCCCTCGGG---GTAAAAACAGACGCAATCCCTGGACGACTAAATCAAACCTCCTTCATCACCACTCGACCAGGAGTGTTTTACGGACAATGCTCAGAAATCTGCGGAGCTAACCACAGCTACATACCCATTGTAGTAGAGTCTACCCCCCTAAAACACTTTGAAGCCTGATCCTCACTA-----------------CTGTCATCTTAA----CCATTAAGAAGCTATG----CACCAGCACTAGCCTTTTAAGCTAGAGAGAGGGGACACC----CTCCCCCTTAATGACATGCCCCAATTAAACCCAAACCCATGATTC------------------TCCATCA---------TACTCCTAACTTGATTCACCTTCTCTCTGCTT------ s fr1.chrUn 326223582 517 + 349519338 ATACAGACTATAGCGA-CTAGCCTTTGACTCATATATAGTCCC-ACACAAGACC-----------TGGCCCCCGGCCAATTCCGCCTTTTAGAAACTGACCATCGAATGGTCGT-TCAGTGGACTCCCCCATTCGAATCCTAGTCTCAGCAGAAGATGTCCTCCACTCCTGAGCCGTCCCCTCTCTAGGT---GTAAAAATGGATGCCGTACCCGGCCGTCTAAACCAAACAGCCTTTATCCTGTCCCGACCTGGTGTTTTCTACGGCCAATGCTCCGAAATCTGCGGAGCTAACCACAGCTTCATACCAATCGTTGTTGAAGCCGTCCCCCTAGAACACTTTGAAAACTGATCCTCACTAATGCTCGAAGATGCCTC------------------ACTAAGAAGCTAAAACGGACACAGCGTTAGCCTTTTAAGCTAAAAATGGTG---CCTACCAAACACCCTTAGTGAAATGCCTCAACTCAACCCCGCACCTTGATTC------------------CTCATTATGGTCTTCTCTTGATGTGTATTCCTAATCTTCCTCCCTCCAAAAAT- s danRer1.chrM 8457 520 + 16596 ATACAGACTACGAAAACCTAGAATTTGACTCTTATATAGTACCAACCCAAGACC-----------TCACACCAGGGGGCTTTCGGCTTCTTGAAACAGACCATCGAATAGTAGTTCCCAAAGAATCACCAATTCGAATTTTAGTTTCAGCTGAAGACGTACTGCACTCTTGAGCTGTTCCATCATTAGGC---ATTAAAATAGACGCGGTACCCGGACGATTAAACCAAACCGCTTTTATTGTTTCACGTCCAGGTGTATTCTACGGACAATGCTCTGAAATCTGCGGGGCTAACCACAGCTTTATGCCCATTGTAGTCGAAGCCGTCCCACTTGAATTCTTTGAAAACTGATCTTCAGCTATACTAGAAGACGCC------------------TCACTAAGATGCTAAAATTGGA-TAGCGTTGACCTTTTAAGTCAAAACTTGGT--GCTTACCGACCACCCTTAGTG-AATGCCTCAGCTTAATCCAAAACCCTGATTT------------------ATAATCCTTTTTTTCTCATGAGTCATTTTCCTTACTATTATTCCAACCAAAATC a score=355.0 s hg17.chrM 8449 6 + 16571 ATTAAA s canFam1.chrM 7885 6 + 16727 TTCAAA s galGal2.chrM 9153 6 + 16775 ATCCAA s fr1.chrUn 326224100 3 + 349519338 ---ATA s danRer1.chrM 8977 6 + 16596 ATTAAT a score=1195.0 s hg17.chrM 8449 5 + 16571 ATTAA s panTro1.chr3 35470186 5 - 209662276 ATTAA s mm5.chrM 7848 5 + 16299 CTCAT s canFam1.chrM 7885 5 + 16727 TTCAA s galGal2.chrM 9153 5 + 16775 ATCCA s fr1.chrUn 326224100 4 + 349519338 -ATAG s danRer1.chrM 8977 5 + 16596 ATTAA a score=91.0 s hg17.chrM 8454 1 + 16571 A s panTro1.chr3 35470191 1 - 209662276 A a score=0.0 s hg17.chrM 8454 1 + 16571 A a score=-28769.0 s hg17.chrM 8455 36 + 16571 CACAAAC--------TACCACCTAC-----CTCCCTCACCAAAGCC------------CAT s mm5.chrM 7853 46 + 16299 CACAAAC-------ATTCCCACTGG-----CACCTTCACCAAAATC---ACTAACAACCAT s rn3.chr2 24391681 39 - 258222147 CCCAAAGTATATTTATTCTAATT----------TTTCATCAAAGAA------------TAT s canFam1.chrM 7891 36 + 16727 -----------TCACTACTACCCAGA-AAACCCGATAACCAAATCT---GC---------- s galGal2.chrM 9159 36 + 16775 CCCAAAC--------TTCTTTCATT-----CACTCTAACAAACAAC------------CCT s fr1.chrUn 326224106 37 + 349519338 ------------CACTTATTCCCAAATGAACCCTCCTCTCAAAACA------------CTT s danRer1.chrM 8983 45 + 16596 -----------CACATTCAACCTAA-----TGACCCAACTCAAGTTGATGCTAAAGAGCAC a score=321517.0 s hg17.chrM 8491 590 + 16571 AAAAATAA---------AAAATTATAACAAA-----------CCCTGAGAACCAAAATGAACGAAAATCTGTTCGCTTCATTCATTGCCCCCACAATCCTAGGCCTACCCGCCGCAGTACTGATCATTCTATTTCCCCCT---CTATTGATCCCCACCT---CCAAATATCTC---ATCAACAACCGACTAATCACCACCCAACAATGACTAA-TCAA-----ACTAACCTCAAAACAAATGATA--GCCATACACAACACTAAAGGACGAACCTGATCTCTTATACTAGTATCCTTAATCATTTTTATTGCCACAACTAACCTCCTCGGACTCCTGCCTCACTCATTTACACCAACCACCCAACTATCTATAAACCTAGCCATGGCCATCCCCTTATGAGCGGGCGCAGTGATTATAGGCTTTCGCTCTAAGATTAAAAATGCCCTAGCCCACTTCTT--ACCACAAGGCACACCTACACCCCTTATCCCCATACTAGTTATTATCGAAACCATCAGCCTACTCATTCAACCAATAGCCCTGGCCGTACGCCTAACCGCTAACATTACTGCAGGCCACCTACTCATGCACCTA-ATT---GGAAGCGCCACCCTAGCAATATCA--------ACCATTAA s panTro1.chr3 35470215 591 - 209662276 AAAAATAAT-------CAAAAT----GCAAAAACATAAAGCTCTCTGAGAATTAAAATGAAAGAAAATCTATTTACCCCTTTTACTACCCTGACAATTCTAGGCCTACCCGCAGTAGTATTAATCATTTTATTTCCCACCAAACTAT---TTCCAACCT---CCAGTCATCTA---ATTAGTAACCAACTGATTTCCATTCAACAGTGACTAATTCAACTTGTACT------AAAACAAATAATATTACC---CATAACATTAAAGGACAAACCTGATCCCTTATACTGATCTTCCTAATTCTCTTCATTGCCTCAACCAATCTCCTCGGGCCTCTACCCCATTAATTTACACCAACTACCCAATTATCAATAAATCTAGGTATAGCAATCCCCTTATGAGCAGGTGCAGTAATTATAGGCTTCTGCTTTAAGACGAAA-------------ACCTCTTTAGCCACAAGGCACACCTATACCACTTATCTCTATGCTAGTGATCATTGAAACTATTAGCCTATTCATTCAACCAATGGCATTAGCTGTGCGATTAACAGCCAACCTTACAGCCAGACACCTACTAATGCATTTATATCGGAGGAGGAGCCACACTAGTACTATCA--------ACTATCAG s mm5.chrM 7899 581 + 16299 AAAAGTAA---------AAACC--------------------CCTTGAGAATTAAAATGAACGAAAATCTATTTGCCTCATTCATTACCCCAACAATAATAGGATTCCCAATCGTTGTAGCCATCATTATATTTCCTTCAATCCTAT---TCCCATCCT---CAAAACGCCTA---ATCAACAACCGTCTCCATTCTTTCCAACACTGACTAG-TTAA-----ACTTATTATCAAACAAATAATGCTAATCCACACACCA--AAAGGACGAACATGAACCCTAATAATTGTTTCCCTAATCATATTTATTGGATCAACAAATCTCCTAGGCCTTTTACCACATACATTTACACCTACTACCCAACTATCCATAAATCTAAGTATAGCCATTCCACTATGAGCTGGAGCCGTAATTACAGGCTTCCGACACAAACTAAAAAGCTCACTTGCCCACTTCCT--TCCACAAGGAACTCCAATTTCACTAATTCCAATACTTATTATTATTGAAACAATTAGCCTATTTATTCAACCAATGGCATTAGCAGTCCGGCTTACAGCTAACATTACTGCAGGACACTTATTAATACACCTA-ATC---GGAGGAGCTACTCTAGTATTAATA--------AATATTAG s rn3.chr2 24391720 540 - 258222147 CAGAGCAT--------CAGAAC----ACAAGTCT--------CAATGAGAAAAAAGATGGCTGAAATTTTCTTTAGCTATAGCACAATCTCAGTGATAAAAGTACTAACTACAGTTGTTTTAATCACCTCATTTTCTAC----CTCT---TTTC--------------ACCTA---AACAAAAATTAATTAACCTTTATTCAA---TGATTAT-GCCATTAATGCT------AAAACAAATAGCA------------ACAATAAAGGCCAGACTTCATTTCTAATATTAACTTCCTTCCTC----TTATTAGGTAAGCAAACTCACTATGATTATTACCATATTCACTTATGTCAACTTTCCAATTATCAATAAA-CTAGGTGTGGCTCCTCCAGT-TGAGCGGAAATAGTCATTATTAGCTTCTGAC-TGAAATGAGAGCCCCATCAGACCATTTTCT--GCTACAAGAAACACTCATTCCATTTCTCCCCATGTCACTAACTATT---------------CCTGTTTAATCCACATCCCTGTCTGTATGATTATCAGGCAATACTGTGGCAGGCCACAAACTGTTCATCCTTCATT---GGCAGAGTCACATTAGTTTTAGCA--------TCCATTAA s canFam1.chrM 7928 589 + 16727 AAAATTGCTG-GTCAACATAAT--------------------CCTTGAGAAAACAAATGAACGAAAATCTATTCGCTTCTTTCGCTGCCCCCTCAATAATAGGTCTCCCTATTGTGGTACTGATCGTCATATTCCCTTCCATTTTAT---TCCCAACAC---CCAGTCGCCTA---ATCAATAATCGGTTAATCTCCATTCAGCAATGACTAA-TTCA-----ACTAACATCAAAACAAATACTA--GCAATTCATAACCAAAAGGGACGAACCTGAGCTCTCATACTTATATCACTAATTCTATTTATTGGCTCAACTAATCTACTTGGACTATTACCTCACTCATTTACGCCCACAACACAACTCTCTATAAACCTCGGAATAGCAATTCCCCTATGAGCAGGGACAGTAATTACCGGTTTCCGCTATAAAACCAAAGCATCCTTAGCACACTTTCT--ACCCCAAGGCACCCCTCTCCCCCTAATTCCAATACTAGTAGTCATCGAAACTATTAGTCTATTTATTCAACCCATGGCTCTAGCCGTTCGATTAACCGCCAATATTACTGCAGGACACCTCCTAATCCATTTG-ATT---GGAGGGGCTACCTTAGCTCTTATC--------AATATTAG s galGal2.chrM 9195 609 + 16775 -----------GCAAACAAAATTACAACAACTAAACCCACC-CCCTGAACCTGACCATGAACCTAAGCTTCTTCGACCAATTCTCAAGCCCCTGCCTACTAGGAATCCCTCTAATCCTCCCATCACTCCTTCTTCCAGCCCTCCTAC---TTCCATCAC---CAGGAAACCGATGGATCAACAACCGCCTCTCCACCATCCAACTCTGATTCA-CCCA-----CCTAATCACAAAACAACTAATA--ACCCCCCTAAACAAGGCAGGTCACAAATGAGCCCTCCTACTCACCTCACTTATCCTAATACTCCTCTCCATTAACCTCCTAGGCCTCCTCCCCTACACCTTCACCCCAACTACCCAACTATCAATAAACATGGCCTTAGCCCTGCCACTATGACTAGCCACCTTACTAACAGGCCTGCGAAACCAACCCTCCGCCTCCTTAGGACACCTACT--CCCTGAAGGCACCCCCACCCCACTGATTCCAGCCCTAATCATAATCGAAACAACCAGCCTACTTATTCGGCCATTAGCCCTAGGAGTACGCCTAACAGCAAACCTCACAGCTGGTCACCTACTTATCCAACTT-ATC---TCTACAGCCACAATCGCCCTACTACCAATAATGCCATCAA s fr1.chrUn 326224143 588 + 349519338 ---------GCCCCAAAGAAAT-----CAAA-----------CCCTGACCCTGATCATGACACTAAGCTTCTTCGACCAATTTCTTAGCCCCACCGCCTTTGGTATTCCCCTGATTGCCCTCGCTCTCCTATTACCTTGGACCCTCT---TCCCCACACCAACCAACCGTTGA---ACCAACAATCGTCTTTTAACACTTCAAAGCCAATTTA-TTAA-----TCGATTTACTCAACAACTGCTC--CTCCCACTAAACATAGGAGGGCACAAATGAGCCCTTATATTCGCCTCATTAATAGTGTTCCTAATTACCATTAATATGCTAGGACTCCTTCCATACACATTCACCCCCACCACACAGCTTTCCGTAAATATAGCCCTAGCTGTACCCCTATGACTCGCAACAGTAATCATCGGAATACGAAACAACCCAACAGCAGCCCTAGGCCACCTTCT--TCCAGAAGGCACCCCCAACGCTCTAATCCCTATCCTAATTATTATCGAAACTGTCAGCCTCTTCATTCGACCTTTAGCACTAGGAGTTCGACTAACCGCTAACCTCACAGCAGGCCACCTGTTGATTCAACTA-ATC---GCTACAGCAGCTTTCGTACTCCTC--------CCCCTTAT s danRer1.chrM 9028 580 + 16596 ----------------AAAAATGACACTTGA-----------AACTGA------CCATGATAACAAGCTTCTTCGATCAATTCGCGAGCCCCTACCTTTTAGGTATCCCCCTTATCCTCGTTGCCATACTTCTACCTTGACTTCTTT---TTCCTGCTCCAACATCACGATGA---ATCAACAATCGACTTATCACCGTCCAAACATGATTGA-CTGG-----ACGATTCACAAACCAACTTATG--ACCCCACTAAACTTTAGCGGCCACAAATGAGCACTTTTATTTGCCTCTCTAATAGTATTCTTAATCACAATTAATCTTTTAGGACTTCTTCCTTATACTTTTACACCAACAACCCAACTCTCTCTGAATATAGGATTTGCAGTACCCCTATGACTTGCCACAGTAATTATCGGAATAAAAAATCAACCGACTATTGCCCTAGGACATCTTTT--ACCAGAAGGAACCCCCATCCCATTAATTCCGGCCCTTATTATTATCGAAACAATTAGCTTATTTATTCGACCATTAGCTTTAGGGGTACGACTTACTGCAAACCTCACAGCAGGCCACCTACTAATTCAACTT-ATT---GCCACAGCAGTATTTGTTCTACTA--------CCAATAAT a score=-3507.0 s hg17.chrM 9081 17 + 16571 -CCTTCCCTCTACACTTA s canFam1.chrM 8517 17 + 16727 -CGCGACCACAGCTTTTA s galGal2.chrM 9808 17 + 16775 -CGCCCTAACGGCACTCA s fr1.chrUn 326224732 16 + 349519338 -CCAACTGTCGCCATTC- s danRer1.chrM 9608 17 + 16596 ACCAGCAGTAGCAATTT- a score=-5282.0 s hg17.chrM 9081 7 + 16571 -CCTTCCC s panTro1.chr3 35470806 7 - 209662276 -TCTTCCC s mm5.chrM 8480 7 + 16299 -CCCACCA s canFam1.chrM 8518 6 + 16727 -GCGACC- s galGal2.chrM 9806 5 + 16775 -TCCGC-- s fr1.chrUn 326224732 6 + 349519338 -CCAACT- s danRer1.chrM 9608 7 + 16596 ACCAGCA- a score=-1082.0 s hg17.chrM 9088 10 + 16571 TCTACACTTA s mm5.chrM 8487 10 + 16299 ACAGCTACCA s canFam1.chrM 8524 10 + 16727 ACAGCTTTTA s galGal2.chrM 9815 10 + 16775 ACGGCACTCA s fr1.chrUn 326224739 9 + 349519338 TCGCCATTC- s danRer1.chrM 9615 10 + 16596 GTAGCAATTT a score=894.0 s hg17.chrM 9098 2 + 16571 TC s mm5.chrM 8497 2 + 16299 TT s rn3.chr2 24392260 2 - 258222147 TT s canFam1.chrM 8534 2 + 16727 TC s galGal2.chrM 9825 2 + 16775 TC s fr1.chrUn 326224748 2 + 349519338 TG s danRer1.chrM 9625 2 + 16596 TA a score=-1734.0 s hg17.chrM 9100 12 + 16571 ---ATCTTCACAATT s fr1.chrUn 326224752 10 + 349519338 ---ATCAACCCTA-- s danRer1.chrM 9627 12 + 16596 ACTGCCTCCGTC--- a score=-3437.0 s hg17.chrM 9100 9 + 16571 ---ATCTTCACA s mm5.chrM 8499 9 + 16299 ---ACATTTATT s rn3.chr2 24392262 8 - 258222147 ---ATTTGCAG- s canFam1.chrM 8536 9 + 16727 ---ACTTTTATT s fr1.chrUn 326224750 9 + 349519338 ---ACATCAACC s danRer1.chrM 9627 9 + 16596 ACTGCCTCC--- a score=1618.0 s hg17.chrM 9109 3 + 16571 ATT s panTro1.chr3 35470834 3 - 209662276 ATT s mm5.chrM 8508 3 + 16299 ATT s rn3.chr2 24392270 3 - 258222147 GCC s canFam1.chrM 8545 3 + 16727 ATT s fr1.chrUn 326224759 2 + 349519338 -CT s danRer1.chrM 9636 3 + 16596 GTC a score=111212.0 s hg17.chrM 9112 101 + 16571 CTAATTCTACTGACTATCCTAGAAATCGCTGTCGCCTTAATCCAAGCCTACGTTTTCACACTTCTAGTAAGCCTCTACCTGCACGACAACACATAATGACC s panTro1.chr3 35470837 101 - 209662276 CTAATCTTACTGAGCATCCTTGAATTCACCGTAGCCCTTATTCAGGCCTATGTCTTTGCACTACTTGTAAGCCTTTACCTATATGAAAACACATAATGTCC s mm5.chrM 8511 101 + 16299 TTACTTCTACTCACAATTCTAGAATTTGCAGTAGCATTAATTCAAGCCTACGTATTCACCCTCCTAGTAAGCCTATATCTACATGATAATACATAATGACC s rn3.chr2 24392273 88 - 258222147 TTCATCAAATGGATTATCTCAATATTACCTTTCTTTTCAATT--------TGCTTTCATGCT-----TAGCCTTTTACCTACAGGATAGTACTTCAAGGCC s canFam1.chrM 8548 101 + 16727 CTAATCCTACTTACGATCCTAGAATTTGCTGTTGCCTTAATTCAAGCCTATGTTTTTACCTTACTAGTGAGTCTATACTTACATGACAACACCTAATGACC s galGal2.chrM 9827 101 + 16775 CTATTCCTACTAACCATCCTAGAAGTGGCAGTAGCAATAATCCAAGCCTACGTCTTCGTCCTCCTCCTAAGCCTCTACTTACAAGAAAATATTTAATGGCA s fr1.chrUn 326224762 101 + 349519338 TTATTCCTCCTGACACTTCTAGAAGTCGCCGTCGCAATAATCCAAGCCTATGTTTTCGTACTTCTTCTAAGCCTCTACCTACAAGAAAACGTTTAATGCCC s danRer1.chrM 9639 101 + 16596 CTTTTCTTACTTACCCTGCTAGAAGTTGCAGTAGCAATAATCCAAGCCTACGTCTTTATTCTTCTTTTAAGCCTATATCTGCAAGAAAACATTTAATGGCC a score=140967.0 s hg17.chrM 9213 202 + 16571 CACCAATCACATGCCTATCATA---TAGTAAAACCCAGCCCATGACCCCTAACAGGGGCCCTCTCAGCCCTC----CTAATGACCTCCGG-CCTAGCCATGTGATTTCACTTCCACTCCATAACGCTCCTCATA-----------CTAGGCC------------------TACTAACCAACACACTAAC--CATATACCAATGGTGGCGCGATGTAACACGAGAAAGCACATACCAAGGCC s panTro1.chr3 35470938 204 - 209662276 CACCAAACACATGCCTACCATA---TAGTCAAACCCAGCCCCTGACCACTAACAGGAGCTCTCTCAGCTCTC----CTAATAACATCTGG-CCTGGCCATGTGATTTCACTTTAACTCTATCAC---CCTTTTA--------ACCCTAGGCT------------------TACTAACCAACACACTAACTATATATACCAGTGATGACGTGACATTATCCAAGAAAGTACATTTCAAGGCC s mm5.chrM 8612 202 + 16299 CACCAAACTCATGCATATCACA---TAGTTAATCCAAGTCCATGACCATTAACTGGAGCCTTTTCAGCCCTC----CTTCTAACATCAGG-TCTAGTAATATGATTTCACTATAATTCAATTAC---ACTATTA--------ACCCTTGGCC------------------TACTCACCAATATCCTCAC--AATATATCAATGATGACGAGACGTAATTCGTGAAGGAACCTACCAAGGCC s rn3.chr2 24392361 234 - 258222147 TCCCTGAATGACACCTATTATATTGTAGTCAATTCTTGTCCCCAAACACTTACAGAACCATTCCCAGCCAGCAAGGTTCACGACATCCAGTTTTGATAATATGATTCCACTTTTACTCCATTGT-----TTTTAGTAAAACAATACTAAACTAATAATGTTTAGTATTGATGCCTAGCAGAATCTTAAC--AATATATCAGTTAGGTTGGGATGCAACCCAGGAAGCTATATTTCAAGACC s canFam1.chrM 8649 202 + 16727 CACCAAACTCACGCTTACCACA---TAGTCAACCCAAGCCCATGACCGCTGACAGGGGCCCTTTCTGCCCTC----CTTATAACATCGGG-TCTTATCATATGATTTCACTATAACTCAATAGC---CCTACTT--------ACATTAGGAT------------------TCACAACCAACCTGTTAAC--CATATGCCAGTGATGACGAGATGTGATCCGAGAAGGCACATTCCAAGGAC s galGal2.chrM 9928 202 + 16775 CACCAAGCACACTCCTACCACA---TAGTTGACCCAAGCCCATGACCAATCTTCGGCGCAGCCGCAGCACTA----CTAACCACCTCTGG-CCTAATCATATGGTTCCACTACAGCTCGACCAC---CCTACTG--------ACAATAGGCC------------------TCCTCTCTATACTTCTAGT--CATGCTGCAATGATGACGAGACGTAGTCCGAGAAAGCACCTTCCAGGGCC s danRer1.chrM 9740 202 + 16596 CACCAAGCACATGCATATCACA---TAGTTGACCCAAGCCCATGACCACTAACTGGAGCTGTAGCCGCCCTA----TTAATATCATCTGG-CTTAGCAATTTGGTTTCACCTTCACTCAATGAC---ATTAATT--------GTTCTAGGAA------------------TAATTCTTCTTATTTTAAC--TATAATCCAATGATGACGAGACATTATTCGAGAAGGGACCTTTCAAGGCC a score=6726.0 s hg17.chrM 9415 8 + 16571 ACCACACA s panTro1.chr3 35471142 8 - 209662276 CCCACACA s mm5.chrM 8814 8 + 16299 ACCACACT s canFam1.chrM 8851 8 + 16727 ATCATACC s galGal2.chrM 10130 8 + 16775 ACCACACC s danRer1.chrM 9942 8 + 16596 ACCATACC a score=20191.0 s hg17.chrM 9423 19 + 16571 CCACCTGTCCAAAAAGGCC s panTro1.chr3 35471150 19 - 209662276 TCAATTGTCCAAAAAGGCC s mm5.chrM 8822 19 + 16299 CCTATTGTACAAAAAGGAC s rn3.chr4 151131657 18 + 187371129 -CCATTTTACAGAAAGGCC s canFam1.chrM 8859 19 + 16727 CCTATTGTACAAAAAGGAC s galGal2.chrM 10138 19 + 16775 CCAACTGTCCAAAAGGGCC s danRer1.chrM 9950 19 + 16596 CCGCCCGTACAAAAAGGGT a score=138985.0 s hg17.chrM 9442 130 + 16571 TTCGATACGGGATAATCCTATTTATTACCTCAGAAGTTTTTTTCTTCGCAGGATTTTTCTGAGCCTTTTA--CCACTCCAGCCTAGCCCCTACCCCCCAACTAGGAGGGCACTGGCCCCCAACAGGCATCAC s panTro1.chrUn_random 213823712 130 - 240967748 TTCGGTATGGAATAATTTTATTCATCATCTCAGAAGTCTTTTTCTTTGCTGGATTCTTCTGAGCATTCTA--CCACTCCAGCCTAGCCCCTACCCCTCAACTAGGAAGACACTGACCCCCAACAGGCATCAC s mm5.chrM 8841 130 + 16299 TACGATATGGTATAATTCTATTCATCGTCTCGGAAGTATTTTTCTTTGCAGGATTCTTCTGAGCGTTCTA--TCATTCTAGCCTCGTACCAACACATGATCTAGGAGGCTGCTGACCTCCAACAGGAATTTC s rn3.chr4 151131675 125 + 187371129 TTCGTTATGAAATAGCT------ATTGTATCTGAAGTCTTTTTCTTGACAGGACTTTTCTGAGCTTTCTGCTCCACTCCAGCCTTGTCCC-GCACATGACCTAGAGGGCTGCTGGCCACCTACAGGAATTAC s canFam1.chrM 8878 130 + 16727 TACGATACGGAATAGTTCTTTTTATCGTATCAGAAGTATTTTTCTTTGCAGGCTTCTTCTGAGCCTTTTA--CCACTCCAGCCTAGCCCCTACTCCTGAACTTGGGGGTTGCTGACCTCCTACCGGCATTAT s galGal2.chrM 10157 130 + 16775 TACGATACGGAATAATCCTTTTCATTACATCAGAGGCCTTCTTCTTCCTAGGATTCTTCTGAGCCTTCTT--CCACTCAAGCCTAGCCCCAACACCAGAACTGGGGGGCCAATGGCCCCCAACAGGAGTCAA s danRer1.chrM 9969 130 + 16596 TGCGGTACGGTATAATCCTATTTATTACCTCAGAGGTATTTTTTTTCCTAGGATTTTTCTGAGCTTTTTA--TCATTCAAGTTTAGCCCCCACCCCTGAACTAGGGGGATGTTGACCACCCACAGGGCTAAC a score=45530.0 s hg17.chrM 9572 68 + 16571 CCCGCTAAATCCCCTAGAAGTCCCACTCCTAAACACATCCGTATTACTCGCATCAGGAGTATCAATCA s panTro1.chrUn_random 213823842 68 - 240967748 TCCACTCAATCCCCTAGAAGTCCCACTCTTAAACACGTCTGTACTACTCGCATCGGGAGTTTCAATTA s mm5.chrM 8971 68 + 16299 ACCACTTAACCCTCTAGAAGTCCCACTACTTAATACTTCAGTACTTCTAGCATCAGGTGTTTCAATTA s canFam1.chrM 9008 68 + 16727 TCCTCTTAACCCATTAGAAGTGCCTCTACTCAACACCTCAGTCCTCCTAGCCTCCGGAGTATCTATTA s galGal2.chrM 10287 68 + 16775 ACCCCTAAACCCCCTTGAAGTACCCCTACTAAATACAGCAATCCTCCTAGCCTCAGGAGTCACCGTTA s danRer1.chrM 10099 68 + 16596 AACTCTTGACCCATTTGAAGTGCCGCTCCTCAATACAGCTGTTTTGCTAGCATCCGGAGTAACAGTAA a score=151784.0 s hg17.chrM 9640 173 + 16571 CCTGAGCTCACCATAGTCTAATAGAAAACAACCGAAACCAAATAATTCAAGCACTGCTTATTACAATTTTACTGGGTCTCTATTTTACCCTCCTACAAGCCTCAGAGTACTTCGAGTCTCCCTTCACCATTTCCGACGGCATCTACGGCTCAACATTTTTTGTAGCCACAGGC s panTro1.chrUn_random 213823910 173 - 240967748 CTTGAGCTCACCATAGCCTAATAGAGAACAATTGTAATCAAGCAATTCAAGCACTACTTATCACAATCTTACTAGGCATCTACTTCACCCTCCTACAAGTTTCAGAATACTTTGATGCCCCCTTTACTATCGCCAATGGTATCTATGGTTCAACATGTTTTGTAGCTACGGGC s mm5.chrM 9039 173 + 16299 CATGAGCTCATCATAGCCTTATAGAAGGTAAACGAAACCACATAAATCAAGCCCTACTAATTACCATTATACTAGGACTTTACTTCACCATCCTCCAAGCTTCAGAATACTTTGAAACATCATTCTCCATTTCAGATGGTATCTATGGTTCTACATTCTTCATGGCTACTGGA s rn3.chr10 102082388 167 - 110733352 CCTGAGTCCATCATTGTCTAACAGAAGGAAAACAAAAAGATAGAAACCAAGCCTTATTTATTACAATTTTCCTGG------ACTCTACTGCCCACCAAGCTTCAGAATATTTTGAAACACCAGTCTCCATCTGAGACAGAATTTATGGATCAACATTCTTCATAACAACAGAG s canFam1.chrM 9076 173 + 16727 CTTGAGCCCATCATAGTTTAATAGAAGGTAATCGCAAACATATACTTCAAGCCTTATTCATTACAATCTCCTTAGGCGTATATTTTACGCTATTACAGGCCTCCGAATACTATGAGACATCTTTTACAATCTCCGATGGGGTATACGGATCTACCTTTTTTATAGCCACTGGA s galGal2.chrM 10355 173 + 16775 CATGGGCTCACCACAGCATCACAGAAGGAAACCGAAAACAAGCCATCCACGCACTAACTCTCACAATCCTCCTAGGATTCTATTTCACAGCCCTACAAGCAATAGAGTACCATGAAGCCTCCTTCTCAATCGCTGACAGCGTCTACGGCTCCACCTTCTTCGTCGCTACAGGG s danRer1.chrM 10167 173 + 16596 CATGAGCACATCACAGCCTCATGGAAGGAGAACGAAAACAAGCCATTCAATCTCTTGCTCTTACAATTCTACTAGGATTGTACTTCACAGCACTTCAGGCTATAGAATACTATGAAGCCCCATTTACAATTGCAGACGGAGTATATGGCTCAACATTCTTTGTAGCTACAGGG a score=106761.0 s hg17.chrM 9813 128 + 16571 TTCCACGGACTTCACGTCATTATTGGCTCAACTTTCCTCACTATCTGCTTCATCCGCCAACTAATATTTCACTTTACATCCAAACATCACTTTGGCTTCGAAGCCGCCGCCTGATACTGGCATTTTGT s panTro1.chrUn_random 213824083 128 - 240967748 TTCCACGGGCTCCCCGTCATCATTGGTTCAACATTCCTTACTGTTTGCCTTATCCGCCAACTATTATATCCTTTTACATCCAAGTACCACTTCGGCTTTGAACCCCCCACTTGATACTGACACTTTGT s mm5.chrM 9212 128 + 16299 TTCCATGGACTCCATGTAATTATTGGATCAACATTCCTTATTGTTTGCCTACTACGACAACTAAAATTTCACTTCACATCAAAACATCACTTCGGATTTGAAGCCGCAGCATGATACTGACATTTTGT s canFam1.chrM 9249 128 + 16727 TTTCACGGATTACACGTAATTATTGGCTCTACATTCCTCATCGTGTGCTTCCTCCGACAGCTATACTACCACTTCACATCAAACCACCACTTCGGATTTGAAGCCGCTGCATGATATTGACACTTTGT s galGal2.chrM 10528 128 + 16775 TTCCACGGACTACATGTAATCATTGGATCATCCTTTTTAACAGTTTGCCTCCTACGACTAATCAAATTCCACTTCACACCAAACCACCACTTCGGATTTGAAGCAGCAGCCTGATACTGACACTTCGT s danRer1.chrM 10340 128 + 16596 TTTCATGGTCTACACGTTATTATTGGATCAACCTTTTTAGCTGTATGCCTTCTACGCCAAGTTTTATTTCACTTCACATCAGACCACCACTTTGGTTTTGAAGCTGCCGCTTGATATTGACACTTCGT a score=8380.0 s hg17.chrM 9941 16 + 16571 AGATGTGGTTTGACTA s mm5.chrM 9340 16 + 16299 AGACGTAGTCTGACTT s canFam1.chrM 9377 16 + 16727 TGATGTAGTCTGGCTA s galGal2.chrM 10656 16 + 16775 AGACATCATCTGACTC s danRer1.chrM 10468 16 + 16596 CGACGTAGTCTGACTA a score=27771.0 s hg17.chrM 9957 42 + 16571 TTTCTGTATGTCTCCATCTATTGATGAGGGTCTTACTCTTTT- s mm5.chrM 9356 42 + 16299 TTCCTATACGTCTCCATTTATTGATGAGGATCTTACTCCCTT- s rn3.chr4 170558950 38 - 187371129 TTTCTATACAT----ACCTATTGATGAGGAGCACACATTCTT- s canFam1.chrM 9393 42 + 16727 TTCTTGTATGTATCTATTTATTGATGAGGATCCTATTTCTTT- s galGal2.chrM 10672 42 + 16775 TTCCTCTACATATCCATATACTGATGAGGATCTTGCTCTTCT- s danRer1.chrM 10484 43 + 16596 TTCCTCTACGTATCAATCTATTGATGAGGCTCATAGCCTTTCT a score=148393.0 s hg17.chrM 9999 266 + 16571 AGTATAAATAGTACCGTTAACTTCCAATTAACTAGTTTTGAC--AACATTCAAAAAAGAGTAATAAACTTCGCCTTA---ATTTTAATAATCAACACCCTCCTAGCC---TTACT---------ACTAATAATTATTA--CATTTTGACTACCACAACTCAACGGCTACATAGAAAAATCCACCCCTTACGAGTGCGGCTTCGACCCTATATCCCCCGCCCGCGTCCCTTTCTCCATAAAATTCTTCTTAGTAGCTATTACCTTCTTATTATTTGATCTAGAAAT s panTro1.chr3 35471726 266 - 209662276 AGTATAAGCAGTACCATTGACTTCTAATCAATTAGTTTCGAT--ATTATCCAAAAGTGAGTAATCAACTTGACATTA---GCTCTAGTAACCAACACCTTACTGGCCCTATTACT---------ACTAATAA-----AAGCATTTTGGCTCCCACAACTTAATATTTATATAGAAAAATCCAACTCCTATGAATGTGGATTTCACCCAATAACCTCTGCCCACCTCCCCTTTTCCATAATATTCTTCCTAGGAGCCGTCACATTCCTCCTCTTTGACTTAGAGAT s mm5.chrM 9398 266 + 16299 AGTATAATTAATATAACTGACTTCCAATTAGTAGATTCTGAA--TAAACCCAGAAGAGAGTAATTAACCTGTACACT---GTTATCTTCATTAATATTTTATTATCC---CTAAC---------GCTAATTCTAGTTG--CATTCTGACTCCCCCAAATAAATCTGTACTCAGAAAAAGCAAATCCATATGAATGCGGATTCGACCCTACAAGCTCTGCACGTCTACCATTCTCAATAAAATTTTTCTTGGTAGCAATTACATTTCTATTATTTGACCTAGAAAT s rn3.chr4 170558988 240 - 187371129 AGTATAATCAG-----------TCCAGCCAGTTAGATGTAGCG-TAAATCTAGATAGTAATCATAACTTTATACATA-------TAACAACTAACATCAACCTATCC---CTACG---------TTGAATGTCCATTG--CATGTTGATTACCTCAACTTAATATTTATACAGAAAAAGCAAACCCCTATGAATGTGGGTTTGACCTAATAGGCTCATCGAACCTTTCATTTTCCATAAAGTTTTTCCTTGT----------TTTCCACCATTCAG--TACAGCT s canFam1.chrM 9435 266 + 16727 AGTATAACTAGTACAATTGACTTCCAATCAGTTAGCTCCAGA--TCAACCTGGAAAGAAGTAATAAACGTTATATTA---ACTTTGATAACTAATGTAACCCTAGCA---TCCTT---------ACTTGTACTAATCG--CATTCTGACTTCCCCAGCTAAATATCTATACAGACAAGACAAGCCCCTACGAATGTGGTTTTGACCCCATGGGATCTGCTCGCCTACCTTTCTCTATAAAATTTTTCCTAGTTGCCATCACATTTCTGCTTTTCGACCTAGAAAT s galGal2.chrM 10714 270 + 16775 AGTATACTCATTACAACTGACTTCCAATCTTTAAAATCTGGTA-TCAACCCAGAGAAGAGCAATGAAC------------ACACTTACATTTATACTCTCACTATCCTTTCTACTAAGCGCTGCACTAACTACTATAA--ACTTTTGACTAGCCCAAATAGCCCCAGACACAGAAAAACTGTCACCGTACGAATGCGGATTTGACCCACTAGGATCAGCCCGACTCCCATTCTCAATCCGATTCTTCCTAGTAGCCATCCTATTCCTTTTATTCGACCTAGAAAT s danRer1.chrM 10527 271 + 16596 AGTATAACCAGTATAAATGACTTCCAATCATTTGGTCTTGGTGAAAAATCCAGGGAAAGGTAATGAATTTATTTGCAACTATTCTTATTATTATAACGACCTTATCA---TTGGT---------CTTAGCTCTAGTAT--CATTTTGACTACCACAAATGAACTCTGATACAGAAAAGCTATCACCATATGAATGCGGATTTGATCCACTAGGGTCCGCCCGCCTACCATTTTCATTACGATTTTTCTTAGTAGCAGTTTTATTCCCTTTATTTGACTTGGAAAT a score=73927.0 s hg17.chrM 10265 153 + 16571 TGCCCTCCTTTTACCCCTACCATGAGCCCTACAAACAACTAA---CCTGCCACTAATAGTTATGTCATC--------CCTCTTATTAATCATCATCCTAGCCCTAAGTCTGGCCTATGAGTGA----CTACAAAAAGGATTAGACTGAGCCGAAT---TGGTATATAGTTT s panTro1.chr3 35471992 153 - 209662276 TGCTGTACTACTACCTCTGCCATGAGCCCTTCAAACAACCAA---CCTGACACTAATA--------ATCAGCACAGCCCTTGTATTAGTTACCATTTCAATCCTAGGCTTGACTTATGAATGAGCCCC----AAAAGTGTTAGACTGAGTTGAAT---TGGTAAATAGTTT s mm5.chrM 9664 156 + 16299 TGCTCTTCTACTTCCACTACCATGAGCAATTCAAACAATTAAAACCTCTACTATAATA--------ATT---ATAGCCTTTATTCTAGTCACAATTCTATCTCTAGGCCTAGCATATGAATGA----ACACAAAAAGGATTAGAATGAACAGAGTAAATGGTAATTAGTTT s rn3.chr16 53341827 156 + 90224819 TGCCTTATTACTTCCTCTGCCTTGAGTAATTCAAACAACTAGCATTATTACAATAATA--------TTT---TCAACTTTTATTCTAGTCATTATTTTATCCCTTGGGTTAATCTATCAATGA----TTACAAAAAGGACTAGAATGGACAGAATAATTGGTAATTAGTTT s canFam1.chrM 9701 154 + 16727 TGCACTCCTACTCCCACTTCCCTGAGCGTCACAAACCAACAA---GCTAACAACAATA--------CTTATCATAGCACTCCTACTAATCTCCCTCCTAGCTGCGAGCCTAGCGTATGAATGG----ACCGAAAAGGGGCTAGAATGAACCGAATA--TGATAATTAGTTT s galGal2.chrM 10984 156 + 16775 CGCCCTGCTTCTTCCCCTTCCATGAGCCATCCAACTTGCACA---CCCTATAATAACC--------CTTACTTGAGCCACCACTATCATCGCCCTCCTCACATTTGGTCTCATCTACGAATGA----ACTCAGGGCGGCTTAGAATGAGCAGAATAACAGAAAGTTAGTCT s danRer1.chrM 10798 153 + 16596 TGCTCTCCTATTACCACTCCCATGAGGAGATCAACTTAATAA---CCCAATAGAAACT--------CTCTTTTGAGCTATAACAGTACTGATTTTGCTAACACTAGGACTAGCCTACGAATGA----GCCCAAGGCGGCCTTGAATGAGCAGAGT---AGGGAGCTAGTCC a score=144767.0 s hg17.chrM 10418 376 + 16571 -AAA--CAAAACGAATGATTTCGACTCATTAAATTATGATA----ATCATATTTACCAA-ATGCCCCTCATTTACATAAATATTATACTAGCATTTACCATCTCACTTCTAGGAATACTAGTATATCGCTCACACCTCATATCCTCCCTACTATGCCTAGAAGGAAT-----AATACTATCGCTGTTCATTATAGCTACTCTCATAACCCTCAA---------CACCCACTCCCTCTTAGC----------CAATATTGTGCCTATTGCCATACTAGTCTTTGCCGCCTGCGAAGCAGCGGTGGGCCTAGCCCTACTAGTCTCAATCTCCAACACATATGGCCTAGACTACGTACATAACCTAAACCTACTCCAATGCTA------------------------------AAACTAATCGTCCCAACAATTATATTAC s panTro1.chr3 35472145 374 - 209662276 -AAG-TCAAAATAAATGATTTTGACTCATTAGATTATGATA---GACCATATTTACCAA-ATGACCACtattaatattattattatattaGCATACACCATATCACTGCTAGGAGTATTAGTCTATCAATCCCACCTAATATCATCCCTATTATGCCTAGAAGGCATCAATCAATA-TAT--------ATCATAAATACTCTTATAACTTTAAATATACATTTCACCC---------TAGC--ATCCA---TAATA-----CCCATTATCCTCTTAGTATTTGCTGCCTGAGAAGCCGCAGTGGGCCTTGCCTCACTAGTTTCAATCTCCAGGACATATGGCCTAGATTACATACAAAATCTAAGTTTACTTCAATGCTA------------------------------AAAATTATTACTCCAACAATTATACTGT s mm5.chrM 9820 380 + 16299 -AAA--AAAAATTAATGATTTCGACTCATTAGATTATGATGA-TGTTCATAATTACCAATATGCCATCTACCTTCTTCAACCTCACCATAGCCTTCTCACTATCACTTCTAGGGACACTTATATTTCGCTCTCACCTAATATCCACATTACTATGCCTGGAAGGCAT-----AGTATTATCCTTATTTATTATAACTTCAGTAACTTCCCTAAA---------CTCCAACTCCAT--AAGC---TCCATACCAATC-----CCCATCACCATCTTAGTTTTCGCAGCCTGCGAAGCAGCTGTAGGACTAGCCCTACTAGTAAAAGTTTCAAACACGTACGGAACAGATTACGTCCAAAATCTCAACCTACTACAATGCTA------------------------------AAAATTATTCTTCCCTCACTAATGCTAC s rn3.chr2 24394176 379 - 258222147 -AGA--TAAAGTGAATGATTCCAACTCATTAGATTTTAATA---TTTAATAACTCCCAATGTGTATTTGGTTTGTTTTAACAATATTCTAGCTTATATAACATGCTTAATAGGACAA------TATCAGTCACACCTATTAAGTTC---ACTACATTTAGAAGGCAT-----AATATTGC------TTATTGGAGGAATGTTTATGCTTTTAAA---------TACCTATTT-----TAACTTATTCACCTCAATA-----CCAGTCCTTTTATTAGT-TTTATAGCCTGCAAGG-----------CTTTCAACTATAATAATGGTATCTAGTACACATGTCCTGGACTATGTGCACCATGTAAACTTTCTCAAATATTATTAAACTAGTATCTGCAAGAAGACACTGTTAAAAT--TCATTCAAACAACTATATGGT s canFam1.chrM 9855 379 + 16727 -AAGCCAAAAACAAATGATTTCGACTCATTAGATTATGATTT-ATCTCATAATTATC---ATGTCCATAGTATATATTAATATCTTTCTGGCATTCATTCTTTCTCTAATAGGTATACTTGTTTATCGATCACACCTAATATCATCGCTACTATGCTTAGAGGGCAT-----AATATTATCACTATTTGTAATAATATCTGTAACTATTCTCAA---------CAATCACCTCACATTAGC-----CAGCATGATA-----CCAATCGTACTACTAGTATTTGCTGCCTGCGAAGCAGCATTAGGACTATCTCTACTAGTTATAGTATCTAACACCTACGGGACTGATTACGTACAAAACCTAAACCTTTTACAATGCTA------------------------------AAAATTATCATCCCTACTATCATACTAA s galGal2.chrM 11140 379 + 16775 -AAC--TAAGACAGCTGGTTTCGACCCAGCAAATTATAGACC-CACCTATAACTTTCTT-ATGTCTCCCCTACACTTCAGCTTCTATTCTGCATTCACATTCAGCAGCCTAGGACTAGCATTCCACCGAACACACCTCATCTCTGCCCTACTATGCCTAGAGAGCAT-----AATACTATCCATATTCATCCCCCTCTCAATCTGACCAGTAGA---------AAACCAAACCC---CATC--ATTCGCCCTTGTA-----CCTATCCTAATACTAGCCTTCTCAGCATGCGAAGCTGGCACAGGCCTAGCCATACTAGTAGCTTCTGCACGAACACATGGCTCTGACCACCTACACAACCTAAACCTTCTACAATGCTA------------------------------AAGATCATCCTACCAACAATCATACTCT s danRer1.chrM 10951 381 + 16596 AAAG--AAAGACCCTTGATTTCGGCTCAAATAATTGCGGTGTAAACCCGTAACTCCCTT-ATGACACCCACGCACTTTAGTCTTAACGCAGCATTTATACTAGGCTTAGCAGGACTTACATTTCACCGTGTTCACCTCCTATCAGCATTATTATGTTTAGAAGGCAT-----AATATTATCTTTATTTATTTCCATAGCCCTTTGAACTTTAAA---------AACAGAGTCAAT--AAGTTTATCCA---CAGCC-----CCTATACTACTACTAGCCTTTTCTGCCTGTGAAGCAAGTGCCGGCCTAGCACTCCTAGTAGCCACAGCTCGAACCCACGGATCTGACCACATAAAAAACCTTAATCTACTACAATGCTA------------------------------AAAGTACTGATCCCCACTATTATGCTAT a score=36041.0 s hg17.chrM 10794 154 + 16571 TACCACTGACATGACTTTCCAAAAAGCACATAATTTGAATCAACACAACCACCCACAGCCTAATTATTAGCATCATCCCCCTACTATTTTTTAACCAAATCAACAACAACCTATTTAG--CTGTTCCCCAACCTTTT------CCTCCGACCCCCTAACAAC s panTro1.chr3 35472519 151 - 209662276 TACCAATGATATGATTCTCTAAAAATTATATAATCTGAATCAACGTGGTTATCCACAGCCTGCTCATCAGCTTTATCAGCCTACTATTTTTTAACCAATTGAACGATAACTCATCCAA--CTTCTCATTAATCTTT---------TCTGACCTGCTGACATC s mm5.chrM 10200 154 + 16299 TACCACTAACCTGACTATCAAGCCCTAAAAAAACCTGAACAAACGTAACCTCATATAGTTTTCTAATTAGTTTAACCAGCCTAACACTTCTATGACAAACCGACGAAAATTATAAAAA--CTTTTCAAATATATTCT------CCTCAGACCCCCTATCCAC s rn3.chr16 53342361 146 + 90224819 TTCCATTAACCTGACTGTTAAAA--------AAACTGAACTAATGTCACCTCTTATAGCTTCTTAGTAAGCTTTATTAGTCTATCACTATTATAGCAAAATGATGAAAATAACTTAAA--TTTCTTAATTATATTTT------CTTTAGCCCCCTTATCTAC s canFam1.chrM 10234 154 + 16727 TCCCCCTTACATGAATATCAAAGCCTAACATAATCTGAATTAACACGACAACATATGGTTTGCTAATCAGCTTAATCAGCTTATTCTACCTAAACCAACCAAATGATAATACATTGAA--CTCCTCCTTAATATTTT------TCTCTGATTCCCTATCGGC s galGal2.chrM 11519 154 + 16775 TGCCCACAGCCCTCTTATCCCCAGCAAAATCCATATGAACTAACACCACAATATACAGCCTTCTAATCGCCTCGATCAGCCTACACTGACTAACCCCATCATACTACCCCACAAAAA--------CCCTAACCCTCTGAACAGGCATAGACCAAATCTCAAC s danRer1.chrM 11332 157 + 16596 TCCCTACAATCTGATTATCTTCATCAAAATGACTGTGAACAACTACAACAATAAACAGCTTTTTAATTGCCTTTATTAGCTTAACATGACTAAAATGAACCTCGGATACAGGGTGAAATGCTTCTAACTCGTACATA-----GCTGCAGACCCACTATCAAC a score=205901.0 s hg17.chrM 10948 423 + 16571 CCCCCTCCTAATACTAACTACCTGACTCCTACCCCTCACAATCATGGCAAGCCAACGCCACTTATCCAGCGAACCACTATCACG--AAAAAAACTCTACCTCTCTATACTAATCTCCCTACAAATCTCCTTAATTATAACATTCACAGCCACAGAACTAATCATATTTTATATCTTCTTC-----GAAACCACACTTATCCCCACCTTGGCTATCATCACCCGATGAGGCAACCAGCCAGAACGCCTGAACGCAGGCACATACTTCCTATTCTACACCCTAGTAGGCTCCCTTCCCCTACTCATCGCACTAATTTACACTCACAACACCCTAGGCTCACTAAACATTCTACTACTCACTCTCACTGCCCAAGAACTATCAAACTCCTGAGCCAACAACTTAATATGACTAGCTTACACAATAGCTTTTAT s panTro1.chr3 35472670 421 - 209662276 ACCCCTTCTAATCTTAACAGCCTGACTACTGCCTCTTATAATTCTAGCAAGCCAATACCACCTGTCCAATGAATCACCCCCGTG---AAAAAATTCTATATTTTGATATTGATTTCTCTACAGACTTTTTTAATCCTAGCATTCACTGCCACAG-ACTAATCATATTTTATATCCTCTTT-----GAAGCCACACTAGTTCCCACCCTAATTATCATCACCCACTGAGGCAACCAACCAGAACGCCTCAATGCAAGATCACACTTCTTATTTTACACACTAGTAGGATTCCTTCCTTTACTTGTAACATTTGTTTATACTCCAAATACCTCAGGTTCACTAAATATGCTAGTAATAATATTTACTATCCAAGAGCTATTAACCTCCTGATCCAATAATCTTATATCACTAGCATGTATCATGGCCTTCAT s mm5.chrM 10354 423 + 16299 ACCATTAATTATTTTAACAGCCTGATTACTGCCACTAATATTAATAGCTAGCCAAAACCACCTAAAAAAAGA--TAATAACGTACTACAAAAACTCTACATCTCAATACTAATCAGCTTACAAATTCTCCTAATCATAACCTTTTCAGCAACTGAACTAATTATATTTTATATTTTATTT-----GAAGCAACCTTAATCCCAACACTTATTATTATTACCCGATGAGGGAACCAAACTGAACGCCTAAACGCAGGGATTTATTTCCTATTTTATACCCTAATCGGTTCTATTCCACTGCTAATTGCCCTCATCTTAATCCAAAACCATGTAGGAACCCTAAACCTCATAATTTTATCATTCACAACACACACCTTAGACGCTTCATGATCTAACAACTTACTATGGTTGGCATGCATAATAGCATTTCT s rn3.chr2 24395464 406 - 258222147 CTCTCTTCTAATACTGAAGCCCTGATTACTTTCCTTAATAATCACAACAAGTCAGTGCC-CTTTTCCAAAGATTCAAATACACA--AAAATACTGATACGTGTCAGTATTAACTGTCC-----AGATTCATAATGATTGCATTTTCCTTCATATAGAAAATGCTATTTTATCTTTTTATTCAAAAAAAACCCTACCAATCTCAGCTTTA---ATTATTACCTAATGAGGTATTCAAACAGAATGATTAAAAGCAGG-----ATTTCCTATTCTATGTACTGAGTGG--CCATTATATCTCCTGTAGCAGTTAGTTATATCATGTATACTACTGGCTCACTACAC-TCTTAACGATGTTCAACTAAATTAAAATACTGTCATATTCCCAGTCAAACAG-----GATGAAGAATCCACATTAAGATGTCTCT s canFam1.chrM 10388 423 + 16727 ACCACTATTAGCACTCACAACATGACTTCTGCCCCTTATACTTATAGCAAGTCAACACCATTTATCAAAAGAACCCTTAACTCG--AAAAAAACTATATATTTCAATACTAATTCTTCTCCAATTGTTCCTAATTATAACTTTCACAGCCTCTGAACTCATCTTCTTTTACATCCTATTT-----GAAGCAACACTGATTCCGACCCTGATCATTATTACCCGATGAGGAAATCAAACTGAACGACTAAACGCAGGACTCTACTTCTTATTTTATACTTTAATAGGATCCCTCCCACTCCTAGTAGCTCTCCTTTATATCCACAATTTCATGGGCTCCCTAAATTTTCTCATAATTCAATACTGAATCCAGCCTCTGCCAAACTCCTGATCTAATATTTTCCTATGACTGGCATGCATAATAGCATTCAT s galGal2.chrM 11673 423 + 16775 TCCCCTCTTAGTACTCTCCTGCTGGTTTCTCCCCCTCATAATTATAGCTAGCCAAGGCCACCTACAACATGAACCCCACAAACG--AAAACGAATATTCATCTCCACCTTAATCATCATCCAACCATTCATCATCCTAGCCTTCTCAGCAACTGAACTCATACTATTCTACATCTCATTC-----GAAGCAACCCTAATCCCAACCCTCATCTTAATCACACGCTGAGGAAACCAACCAGAACGACTTAGCGCAGGCATTTACCTTCTATTCTATACCCTAATTAGCTCTCTTCCCCTACTAGTCTCCATCCTCTACCTTCACACAAATACTGGAACCCTCCACCTACCCATTATCAAACTCACCCACCCCAACCTACCTGCCTCCTGAACAAGCTTATTATCTAGCCTAGCTCTCCTAATAGCCTTTAT s danRer1.chrM 11489 423 + 16596 ACCTCTTCTAGTACTAACCTGTTGACTTCTTCCATTAATGATTCTAGCTAGCCAAAATCACATCAACTCGGAGCCTGTAAACCG--ACAACGAATATACATTACACTTCTTGCCTCTTTACAAACTTTCATAATTATGGCGTTTGGCGCTACAAAAATCATTATATTCTACATTATATTC-----GAAGCTACACTTATCCCAACACTAATCATTATTACCCGATGAGGTAATCAAGCTGAGCGCCTTAACGCAGGTACTTACTTTCTTTTCTATACATTAGCAGGCTCTCTACCTCTTTTAGTAGCCCTCCTATTACTGCAACAATCAACAGGAACCCTATCAATACTAGTACTTCAGTACTCAGACCCACTTTTACTTAACTCTTGAGGACATAAAATCTGATGAGCCGGCTGCTTAATTGCATTCCT a score=87189.0 s hg17.chrM 11371 111 + 16571 AGTAAAGATACCTCTTTACGGACTCCACTTATGACTCCCTAAAGCCCATGTCGAAGCCCCCATCGCTGGGTCAATAGTACTTGCCGCAGTACTCTTAAAACTAGGCGGCTA s panTro1.chr3 35473091 111 - 209662276 AGTAAAAATACCTCTATATGGACTTCACCTATGACTCCCTAGAGCCCATGTAGAATCCCCTATTGCCAACTCAATAGTACTTGCAGCAGTACTCCTAAAGCTAGGTGGTTA s mm5.chrM 10777 111 + 16299 TATTAAAATACCATTATATGGAGTTCACCTATGACTACCAAAAGCCCATGTTGAAGCTCCAATTGCTGGGTCAATAATTCTAGCAGCTATTCTTCTAAAATTAGGTAGTTA s rn3.chr2 24395989 80 - 258222147 AAAAAAGATGTCTCT-TACTGCCTCTACC-----------AAACCACAAGTAG--------------GAATGAGTTGTCCTTGCAGTCACAGT-GTAAACCTGGATG---- s canFam1.chrM 10811 111 + 16727 AGTAAAGATACCTCTATACGGCCTCCACTTGTGACTACCAAAAGCACACGTAGAGGCCCCTATTGCCGGCTCCATAGTACTTGCCGCTGTACTCCTAAAACTAGGGGGCTA s galGal2.chrM 12096 111 + 16775 AGTCAAAGCACCCCTATACGGACTACACCTATGACTGCCTAAAGCCCATGTAGAAGCACCAATCGCAGGCTCCATACTACTCGCTGCTCTACTACTAAAACTAGGCGGATA s danRer1.chrM 11912 111 + 16596 AGTAAAAATACCGCTATATGGGATACACCTTTGATTACCAAAAGCACATGTAGAAGCCCCTGTAGCAGGATCTATAATTCTAGCGGCAGTGCTACTAAAACTAGGAGGCTA a score=48447.0 s hg17.chrM 11482 88 + 16571 TGGTATAATACGCCTCACACTCATTCTCAACCCCCTGACAAAACACATAGCCTACCCCTTCCTTGTACTATCCCTATGAGGCATAATT s panTro1.chr11_random 29231538 88 - 53199993 CGGTATAATACGGCTTACCCTTATCCTCAGCCCCCTAACAGAATATATAGCCTACCCCTTCCTCATACTATCCCTATGAGGGATAGTT s mm5.chrM 10888 88 + 16299 CGGAATAATTCGCATCTCCATTATTCTAGACCCACTAACAAAATATATAGCATACCCCTTCATCCTTCTCTCCCTATGAGGAATAATT s rn3.chr2 24396069 71 - 258222147 TGATGTA---------------ATTTTAAATCTACTCACAGGACATACAATGTACTCAT--CGTCTATTGGCCCCATTAAGAATACTT s canFam1.chrM 10922 88 + 16727 TGGCATGATACGAATTACAACCCTACTAAATCCCCTGACCAATTTCATAGCATACCCCTTCATAATATTGTCTCTATGAGGCATAATC s galGal2.chrM 12207 88 + 16775 TGGCATCATACGAGTCACCCTCCTAATGGAGCCCGTATCCAACTTCTTACACTACCCCTTCCTCACCCTAGCCCTATGAGGTGCCCTA s danRer1.chrM 12023 88 + 16596 CGGTATGATACGAATAATAGTAATATTAGATCCTTTATCTAAGCAACTAGCATACCCGTTTATTATCCTTGCTCTATGAGGAGTAATC a score=59688.0 s hg17.chrM 11570 91 + 16571 ATAACAAGCTCCATCTGCCTACGACAAACAGACCTAAAATCGCTCATTGCATACTCTTCAATCAGCCA---------------CATAGCCCTCGTAGTAACAGCCA s panTro1.chr11_random 29231626 89 - 53199993 ATGACAAGCTCCATTTGTCTACAACAAACCGATCTAAAA----TCATTGCCTACTCCTCTGTAAGCCATATACCACTTGTCATCATAGCTCTC------------- s mm5.chrM 10976 91 + 16299 ATAACTAGCTCAATCTGCTTACGCCAAACAGATTTAAAATCACTAATCGCCTACTCCTCAGTTAGCCA---------------CATAGCACTTGTTATTGCATCAA s canFam1.chrM 11010 91 + 16727 ATAACAAGCTCTATCTGTCTCCGTCAAACAGATCTAAAATCCCTAATTGCATACTCCTCAGTTAGTCA---------------TATGGCACTGGTTATCGTAGCGG s galGal2.chrM 12295 91 + 16775 ATAACTAGCTCTATCTGCTTACGCCAAACAGACCTAAAATCCCTCATTGCCTACTCATCCGTAAGCCA---------------TATGGGCCTAGTCATCGCTGCAA s danRer1.chrM 12111 91 + 16596 ATAACAGGATTAGTTTGTCTACGACAAACAGACTTAAAATCGCTAATTGCCTATTCATCAGTAGGCCA---------------TATGGGACTAGTTGCAGGAGGAA a score=195175.0 s hg17.chrM 11661 417 + 16571 TTCTCATCCAAACCCCCTGAAGCTTCACCGGCGCAGTCATTCTCATAATCGCCCACGGACTCACATCCTCATTACTATTCTGCCTAGCAAACTCAAACTACGAACGCACTCACAGTC-------GCATCATAATCCTCTCTCAAGGACTTCAAACTCTACTCCCACTAATAGCTTTTTGATGACTTCTAGCAAGCCTCGCTAACCTCGCCTTACCCCCCACTATTAACCTACTGGGAGAACTCTCTGTGCTAGTAACCA------CGTTCTCCTGATCAAATATCACTCTCCTACTTACAGGACTCAACATACTAGTCACAGCCCTATACTCCCTCTACATATTTAC----CACAACACAATGGGGCTCACTCACCCACCACAT--TAACAACATAAAACCCTCATTCACAC---GAGAAAACACCCT----------CATGTTCATAC s panTro1.chr11_random 29231715 419 - 53199993 --CTAATCCAAACCCCTTGAAGCTTTACAGGTGCCGTCAGCCTTATAATTACCCATGGAGTCACTTCATCCCTGTTATTCTGCCTAGCAAATTCCAACTACGAGTG-------AGTCCAAAACGGAATCATATTACTTACCTGAGGCCTTCAAATACTCCTCCCACTGATAGCCTCATGATGACTTCTAGCAAATCTCACTAATCTTGCCTTA-CCCCTACCATTAATCTAGTAAGGGAACTCTCTGTG------ATCATGGCTTCATTCTCCTGATCAAACATCGCTATTATGCTTACAGGACTTAATATACTAATTACAACCCTCTACTCC--CTACATA--TACCAATCACAACACAATGAGGGACACTTACATATTACAT--TAACA--GTTAAACCTTCCTTTACAC---AAGAAAATACATTAATATTTATACATGT---TAC s mm5.chrM 11067 427 + 16299 TCATAATCCAAACTCCATGAAGCTTCATAGGAGCAACAATACTAATAATCGCACATGGCCTCACATCATCACTCCTATTCTGCCTAGCAAACTCCAACTACGAACGGATCCACAGCC-------GTACTATAATCATGGCCCGAGGACTTCAAATGGTCTTCCCACTTATAGCCACATGATGACTGATAGCAAGTCTAGCTAATCTAGCTCTACCCCCTTCAATCAATCTAATAGGAGAATTATTCATT------ACCATATCATTATTTTCTTGATCAAACTTTACCATTATTCTTATAGGAATTAACATTATTATTACAGGTATATACTCAATATACATAATTAT----TACCACCCAACGCGGCAAACTAACCAACCATAT--AATTAACCTCCAACCCTCACACACAC---GAGAACTAACACTAATAGCCCTTCACATAATTCC s rn3.chr2 24396826 404 - 258222147 -TTCTACTTGAACACCACGGAGTCCCACAGGCTC-GCAGCCCTGATGAGTGCCCATGGTCTCAAGGTATAAACAGCTGTCTGCCTTACAGTCTCCAACTAAACCTGAATTCATATCC--------AACTACGTTGTTACCTTGCAGGTAACAACCATTACTGTCTTCGATAAC---GTGCTAAGTGTGGGCTAGC------AATCTAGCCTTTACTGTCAGATACCACCTTCTTAGGGAA-TATTTGTG------TTTACAACT-CGTTTTCATGATTTAGTTTTACCCTCATTATGGCAGGATTTACCAGACCAATTAAAACCGTCTACTAGCTCTGCAGAATCAT----CGCAAGGCAATGAGGAAAACTTATATTCCACAT--TAACA--GTACCAACCTCTTCTGCATTTGGAAAAATGACTCTTCTCTTCCCAC---------- s canFam1.chrM 11101 417 + 16727 TTCTTATTCAAACACCATGAAGTTATATAGGTGCAACAGCTCTAATAATTGCCCATGGTTTAACATCCTCAATACTATTCTGCTTAGCCAACTCCAATTACGAACGAATCCATAGCC-------GTACTATAATTCTCGCACGAGGACTTCAAACTCTCCTTCCCCTAATAGCAGCCTGATGACTATTAGCAAGCCTCACAAATCTGGCTCTCCCTCCAACAATTAATCTTATCGGAGAACTATTTGTA------GTGATATCCTCATTCTCATGATCCAACATTACTATTATCCTAATAGGAATTAACATTATCATCACCGCCCTATACTCACTTTATATATTAAT----CACCACACAACGTGGTAAATATTCCCACCATAT--CAAAAATATCAAACCATCATTCACAC---GAGAAAATGCCCTAATGACCTTGC---------- s galGal2.chrM 12386 417 + 16775 GTATAATCCAAACCCAATGATCATTCTCAGGTGCAATAATCCTCATAATCTCCCATGGACTAACCTCTTCCCTTTTATTCTGCCTAGCAAACACAAACTACGAACGGACACACAGCC-------GCATTCTTATCCTGACACGAGGCCTCCAACCCCTCCTACCATTGATATCAGTATGATGATTACTAGCCAACTTAACCAACATGGCCCTGCCCCCAACCACCAACCTGATAGCAGAACTAACAATT------ATAGTTGCCCTCTTCAACTGATCCTCCCCCACAATTATCTTAACCGGCACTGCAACACTCCTAACCGCCTCTTACACCCTCTACATACTACT----CTCAACCCAACGAGGCACTCTTCCATCCCACATCACAACAACCCCCAAC--TCAAACACTC---GAGAACATCTTCTCATAACCCTCC---------- s danRer1.chrM 12202 417 + 16596 TTTTGATTCAAACCCCCTGAGGATTTACAGGAGCAATTATTTTAATAATCGCCCACGGACTAACCTCATCCGCCCTATTTTGCTTAGCTAACACATCGTATGAACGAACTCATAGCC-------GGACCATAATCCTCGCTCGAGGACTCCAGATAGTGCTACCGCTAGCAACAGTATGGTGATTTATTGCTAATCTGGCCAACCTAGCACTTCCACCTCTACCAAACTTGATAGGAGAACTTATGATT------ATCACAGCCCTATTTAACTGATCTCCATGAACAATTATTATTACAGGAATAGGAACCTTAATTACAGCAAATTATTCACTTTATATATTTTT----AACATCTCAACGAGGCTCAATCCCAGAACACAT--CACCAATCTTTCACCATCCCACACCC---GAGAACATCTCTTAATGACTTTAC---------- a score=1681.0 s hg17.chrM 12078 63 + 16571 ACCTATCCCCCATTCTCCT-CCTATCCCTCAACCCCGACATCATTACCGGGTTTTCCTCTTGTA------- s panTro1.chr11_random 29232134 55 - 53199993 ACCT-------ATTCTTCT-ATTAT-CCTAAATCCTAAAATTATTATGGACTTTACATGCTGTA------- s mm5.chrM 11494 53 + 16299 ACTT-------ATTCTTCTAACTAC----CAGTCCAAAACTAATTACAGGCCTGACAATATGTG------- s canFam1.chrM 11518 63 + 16727 ACCTACTGCCCCTACTCCT-CCTATCCCTTAACCCTAAAATTATTCTCGGTCCCATCTACTGTA------- s galGal2.chrM 12803 63 + 16775 ACATCATCCCCATACTAAC-ACTCATCCTCAAACCAGAACTAATCTCAGGAACCCCTCTATGCA------- s danRer1.chrM 12619 64 + 16596 ACCTAATTCCTATCATCTT-ACTTATATTAAAACCAGAACTTATGTGAGGT------TGATGTAACTAGTA a score=871.0 s hg17.chrM 12141 2 + 16571 AA s panTro1.chr11_random 29232189 2 - 53199993 GC s mm5.chrM 11547 2 + 16299 AA s rn3.chr2 24397331 2 - 258222147 AA s canFam1.chrM 11581 2 + 16727 AG s galGal2.chrM 12866 2 + 16775 AA s danRer1.chrM 12683 2 + 16596 AG a score=150956.0 s hg17.chrM 12143 196 + 16571 TATAGTTTAAC-CAAAACATCAGATTGTGAATCTGACAACAGAGGCTTACGACCCCTTATTTACCGAGA--------AAGCT-CACAAGAA---------CTGCTAACTCATG--CC-CCCATGTCTAACAA-CATGGCTTTCTCA--ACTTTTAAAGGATAACAGCT-ATCCATTGGTCTTAGGCCCCAAAAAT-TTTGGTGCAACTCCAAATAAAAGTAAT s panTro1.chr3 35473859 196 - 209662276 TATAGTTTAAC-CAAAACATTAGATCGTGGATCTAACAATAGAAGCCTGCAACTTCTTACCTACCAAGA--------AAGTA-TGCAAGAA---------CTGCTAACTCATG--CC-CCCATGTTTAACAA-AATGGCTTTCTCA--ACTTTTAAAGGATTGGAGTT-ATCCATCGGTCTTAGGAACTAAAAAC-ATTGATGTAACTCCAAATAAAAGTAAC s mm5.chrM 11549 194 + 16299 TATAGTTTACA-AAAAACATTAGACTGTGAATCTGACAACAGGAAA-TAAACCTCCTTATTCACCAAGA--------AAGAT-TGCAAGAA---------CTGCTAATTCATG--CT-TCCATGTTTAAAAA-CATGGCTTTCTT---ACTTTTATAGGATAATAGTA-ATCCATTGGTCTTAGGAACCAAAAAC-CTTGGTGCAAATCCAAATAAAAGTAAT s rn3.chr2 24397333 182 - 258222147 TATATTTTATG-TTAACCATTACATTGTT--TCTAATAACAGAAAATTACAG---CTTGTTCCCTGAGA--------CA-TG-TGAAAGAC---------ATACTGATTCACAGCCC-CCCATGTGTGACAA---------TCTTA--AGTTTGAACAGGTAAAAGTA-ATTTACTACTTTGAAGGGC--AAAAC-TTTGGTCTGACTCCAAATAGAAGTAAT s canFam1.chrM 11583 196 + 16727 CATAGTTTAAC-AAAAACATTAGATTGTGAGTCTAACAATAAAAGCTCAAACCTTTTTGCTTACCGAAA--------AAGTACTGCAAGAA---------CTGCTAATTCATG--CT-CCCATGCATAAGAA-CATGGCTTTTTCA--ACTTTTATAGGATAGAAGTA-ATCCGTTGGTCTTAGGAACCAAAAA--ATTGGTGCAACTCCAGATAAAAGTAAT s galGal2.chrM 12868 204 + 16775 CATAGTTTAAC-CCAAACATTAGATTGTGATTCTAAAAATAGGAGTTTAACCCTCCTTGTTCGCCGAGGGGAGGCCCAAGCC-AGCAAGAA---------CTGCTAATTCCTG--CA-TCTGAGCTTTAAAC-CTCAGTCCCCTTA--ACTTTTAAAGGATAAGAGCA-ATCCGTTGGTCTTAGGAACCACCTAT-CTTGGTGCAAATCCAAGTAAAAGTAAT s danRer1.chrM 12685 210 + 16596 TTTAGTTTAAAGTAAAATTTTAGATCGTGACTCTAAAGATAGGGGTTAAAGCCCCCTCACTCACCGAGG--------AAGAG-TAGGAAAACAGTAAATGCTGCTAATATTTA--CCAACCATGGTTAAACTCCATGGCTTCCTTACCGCTTCTAAAGGATAATAGTACATCCATTGGTCTTAGGAACCAAAAACTCTTGGTGCAACTCCAAGTAGAAGTT-- a score=-27322.0 s hg17.chrM 12339 84 + 16571 AACCATGCA-------CACTAC------------TATAACCACCCTAACCCTGACTTCCCTAATTCC--------CCCCAT--CCTTAC----------CACCCTCGTTAACCCTAACAAAAA------ s panTro1.chr3 35474055 84 - 209662276 AAACATG------------TATCTTCCATG--GGTATAACAGCCCTAATCC------CCTTAATTCC-------------------TACTGATTACTATTATCTTAGCCAACTCCTGCAAAAT------ s mm5.chrM 11743 83 + 16299 CAA----------------TAT------------TTTCACAACCTCAATCTTATTAATCTTCATTCTTCTACTATCCCCAA--TCCTAA----------TTTCAATATCAAACCTAATTAAAC------ s canFam1.chrM 11779 84 + 16727 AAATATA------------TTTTCTTCATG-CATAATCACAGCCCTAGTTA------TTCTTACTTT--------GCCCAT--CATTAT----------ATCCTCTACTAAACTTTACAAGAA------ s galGal2.chrM 13072 92 + 16775 --------GGAGACTCCACTGC--TCCTTAACACCCTCACAACATTAACACTACTCACCCTCCTTAC--------CCCTATTATCCTTC----------CCCCCCTCCTAAATCTAAAAA--------- s danRer1.chrM 12895 86 + 16596 ----------------TATGAC------TGATATGATCATACCTTTAACATTAA---TCCTAATTTT--------CGCAGTTTTATCAT----------ACCCCTTATTAAAACCAAAAAGCTATTCAA a score=142193.0 s hg17.chrM 12423 342 + 16571 AAACTCATACCCCCATTATGTAAA---------ATCCATTGTCGCATCCACCTTTATTATCAGTCTCTTCCCCACAACAATATTCATGTGCCTAGACCAAGAAGTTATTATCTCGAACTGACACTGAGCCACAACCCAAAC-----AACCCAGCTCTCCCTAAGCTTCAAACTAGACTACTTCTCCATAATATTCATCCCTGTAGCATTGTTCGTTACATGGTCCATCATAGAATTCTCACTGTGATATATAAACTCAGACCCAAACATTAATCAGTTCTTCAAATATCTACTCATTTTCCTAATTACCATACTAATCTTAGTTACCGCTAACAACCTATTCCAACTGTTCATCGG s panTro1.chr3 35474139 338 - 209662276 AGGCTCATACCCAAATTATGTAAAA------ACATC---TATCACATATGCCTTCATCATTAGCCTCATCCCAACAACAATGTTTATATGCACAGACCAAGAAGCCATTATCTCAAACTGACATTGAATGATGATCCAGACTCTCAAA-----CTCTCACTAAGCTTCAAACTAGACTACTTCTCCACAAAATTTATCCCAGTAGCGCTATTCATTACCTGAACTATTGTAGAATTATCAATATGATATATAAATTCAGACTCTAACATTAATCAATTTTTCAAG----TACTTATTTTCTTCATCATGATATTAATTCTGGTTACTGCCAACAACCTCTTTCAGCTCTTTATCGG s mm5.chrM 11826 343 + 16299 ACA-TCAACTTCCCACTGTACACCACC----ACATC---AATCAAATTCTCCTTCATTATTAGCCTCTTACCCCTATTAATATTTTTCCACAATAATATAGAATATATAATTACAACCTGGCACTGAGTCACCATAAATTC-----AATAGAACTTAAAATAAGCTTCAAAACTGACTTTTTCTCTATCCTGTTTACATCTGTAGCCCTTTTTGTCACATGATCAATTATACAATTCTCTTCATGATATATACACTCAGACCCAAACATCAATCGATTCATTAAATATCTTACACTATTCCTGATTACCATGCTTATCCTCACCTCAGCCAACAACATATTTCAACTTTTCATTGG s rn3.chr2 123593513 320 + 258222147 AAA-TCAGTTTCCC-TTCTGTATAAAT----TCATT---TATCAAATATGCTTTCCTTCTTAGCCTATTACCTCTAATATCATTCTACTATTCTGACACA-----CCTGATTACTAACTGATACTGAATTACTATTAATTATTCCAAA---------CTATCAGTTTAACATTTGACTATTTCTGCATATTCTTTTTACTCGTGACTTTATTCATAACCTAATCAGTCATAAAGTTTTCTTCATGATCTATACACCCCAACCTCTCCTAAACTATTTTTATCAAATACCTCCTT-TATTTTTAATTTCATTAATTATCTTTGCTTCAACCAACAAC------------TTTATTGG s canFam1.chrM 11864 341 + 16727 AAG-CTATACCCATACTATGTAAAA------ACCGC---TACTTCTTACGCGTTCATAATTAGCATAATTCCCACAATAATATTCATCTACTCAGGACAGGAAACAATCATTTCAAACTGGCATTGAATAACAATCCAAACTATAAAA-----CTATCCATGAGTTTCAAATTAGACTACTTCTCAATAATCTTTGTACCTGTAGCCCTTTTTGTCACGTGGTCTATCATAGAATTCTCTATATGATATATACACTCCGATCCTTACATTAACCGGTTTTTCAAGTACCTTCTCTTATTCCTCATCACTATAATAGTCCTAGTTACCGCAAACAACATATTCCAACTATTCATTGG s galGal2.chrM 13164 337 + 16775 -------ACTCCCCCATATCCATCACC----AAAAC---CATTAAAACCGCCTTCCTAATCAGCCTAATCCCAACAACAATCTTCATCCACTCAGGGGCAGAAAGCATTGCCACCCACTGAGAATGACAATTTATCCCCAACTTCAAG-----ATCCCCATCTCCCTAAAAATAGACATATACTCCATAATATTCTTCCCCATTGCACTATTTGTAACCTGATCCATCTTAGAGTTCGCAACATGATACATAGCATCCGAACCATTTATTACAAAATTCTTTACCTACCTACTCACCTTCCTCATCGCCATATTAACACTAACCATCGCAAATAACATATTCCTCCTATTTGTAGG s danRer1.chrM 12981 343 + 16596 -----AATCCAACAACTCTTTCCAAGCTTGAAATGC---TGTCCATGTATCTTTCTTAATTAGTCTTATCCCACTTACAATGATGCTGTACAAAGAATCAGACCATGTTGTAATATGCTGAAGCTGAATAAATACACAAGCGTTTAAC-----GTAGACCTAAGTTTTAAATTTGACTACTATTCTGTGACTTTTACCTCAATCGCCTTATTCATCACCTGGTCAATTTTAGAATTTGCATCATGATATATAGCCTCTTATCCACAAAAAGAATTATTTTACAAATATTTACTTCTTTTTCTTATATCAATAATTATCTTAGTTACAGCCAACAATCTATTTCAACTATTTATTGG a score=543567.0 s hg17.chrM 12765 648 + 16571 CTGAGAGGGCGTAGGAATTATATC-CTTCTTGCTCATCAGTTGATGATACGCCCGAGCAGATGCCAACACAGCAGCCATTCAAGCAGTCCTATACAACCGTATCGGCGATATCGGTTTCATCCTCGCCTTAGCATGATTTATCCTACACTCCAACTCATGAGACCCA----CAACAAATAGCCCTTCTAAA------CGCTAATCCAAGCCTCACCCCACTACTAGGCCTCCTCCTAGCAGCAGCAGGCAAATCAGCCCAATTAGGTCTCCACCCCTGACTCCCCTCAGCCATAGAAGGCCCCACCCCAGTCTCAGCCCTACTC-CACTCAAGCACTATAGTTGTAGCAGGAATCTTCTTACTCATCCGCTTCCACCCCCTAGCAGAAAATAGCCCACT-AATCCAAACTCTAACACTA-TGCTTAGGCGCTATCACCACTCTGTTCGCAGCAGTCTGCGCCCTTACACAAAATGACATCAAAAAAATCGT-AGCCTTCTCCACTTCAAGTCAACTAGGACTCATAATAGTTACAATCGGCATCAACCAACCACACCTAGCATTCCTGCACATCTGTACCCAC--GCCTTCTTCAAAGCCATACTATTT-ATGTGCTCCGGGTCCATCATCCACAACCTTAACAATGAACAAGATATTCGAAAAAT s panTro1.chr11_random 29232784 648 - 53199993 ATGAGAAGGTATAGGAATCATGTC-TTTCTTACTAACTGGCTGACAATATGGCCGAGCAGATGCTAATACAGCAGCCCTCCAAGCAGTCCTGCACAATCGCATCGGCGATATTGGTTTTATTTTAGTTATAGCATGGTTCCTCTTTTCCTCCAACACATGAG----AGATTCAACAAGCATTCATTCTAAACCCTACCTCTAATCC---CCT---TCCATTAATTCGCCTTCTCTTAGCAGCAGCAGGAAAGTCAGCTAAATTCGGCCTCCATCCCTGACTTCCATCCGCCATAAAAGGCCCAACCCCAGCCTCAGCCCTGCTC-CACTCCAGCACTGTAGTTGTAGCAGGAGTTTCCCTGCTCATCCGCTTCTACCCTTTAATAGAAAATAACCT-CTGAACCCAAACCTTTACATTA-TCTCCAGGGGCTATTACCATCTTATTTACAGCAATCTGCGCTCTAACACAAAGTGATATTTAAAAAATCAT-AGCATTCTCCACCTCAAGTCAGCTGGGCCTTACGACAGTCACAATTGGCATGAATCAGCCACACCTAGCATTCCTTCACATCTGCAGCCAC--GCCTTTTTTAAAGCTATATTATTT-ATATGCTCAGGCTCCATCATCCACAATCTCAATGATGAACAAGATATTTGAAAAAT s mm5.chrM 12169 648 + 16299 CTGAGAAGGGGTGGGAATTATATC-TTTCCTACTAATTGGATGATGGTACGGACGAACAGACGCAAATACTGCAGCCCTACAAGCAATCCTCTATAACCGCATCGGAGACATCGGATTCATTTTAGCTATAGTTTGATTTTCCCTAAACATAAACTCATGAG----AACTTCAACAGATTATATTCTCCAACAACAACGACAATCT---AAT---TCCACTTATAGGCCTATTAATCGCAGCTACAGGAAAATCAGCACAATTTGGCCTCCACCCATGACTACCATCAGCAATAGAAGGCCCTACACCAGTTTCAGCACTACTA-CACTCAAGTACAATAGTAGTTGCAGGAATTTTCCTACTGGTCCGATTCCACCCCCTCACGACTAATAATAA-CTTTATTTTAACAACTATACTT-TGCCTCGGAGCCCTAACCACATTATTTACAGCTATTTGTGCTCTCACCCAAAACGACATCAAAAAAATCAT-TGCCTTCTCTACATCAAGCCAACTAGGCCTGATAATAGTGACGCTAGGAATAAACCAACCACACCTAGCATTCCTACACATCTGTACCCAC--GCATTCTTCAAAGCTATACTCTTT-ATATGCTCTGGCTCAATCATTCATAGCCTGGCAGACGAACAAGACATCCGAAAAAT s rn3.chr2 123593833 599 + 258222147 CTGAGAAGACATAGGTATTATATCACTTTCTACCA---------------------------GCAAACAGTGCAGCCCTGCAAGCAGTGTTGTGTAATCACAATGGAGTCATTAGATTAGTTTTAGCTACAGCATGAATCTTTGTAAACATCAACTCCTGAG----AACTTCAACAGATTTTTTTTCTTA-------CATCAACTT---AAC---TCCTCTCCTAGGCCTTCTAATTCCAGCCCCAGGAAAATCAGCACAATTTACTATCCGCTCCTGACTCCCATCAACCACAG-AGGCCCTTCCCCA-TCTCAGCATTCCTCTCATTCAAGTCCTGTAGTTGTTTCAGGAATCTTCTTAGTAATCAGACTTTACTCACTTG----AAATAACTA-CT--------ATTGTGATACTTGTGTCTTGAGTCACTACCCACATTGTTCACAGCCATCTGTGCAATTAC-TAAAATGACATTTAATTTTTTTTAAACATTTCGCACATTTAGCCAGTTAGGCCTTACAATAGTAGCTTTAGGTGTAAGTCAACCCTCTCTAGCTTTCCTTCACATCTGTACACACATACATTCTTCACAGCTATTCAGTTTCATGTGCCCAGG-------GTTCACAGCTTTAATGCTGAACAAGACATCTGGAAAAT s canFam1.chrM 12205 648 + 16727 TTGAGAAGGAGTTGGCATTATATC-ATTCCTACTTATTGGATGATGGTACGGCCGAACCGATGCAAATACAGCCGCCCTACAAGCCGTCCTCTACAACCGTATTGGAGATGTAGGCTTCATTATAACCATAGCATGATTTCTACTAAACTTAAACACATGAG----ACCTTCAACAAATCTTCATTACGA---CAAACGATAATTTTAATCT---GCCACTACTTGGCCTACTACTAGCAGCTACCGGTAAATCTGCTCAATTCGGCCTACATCCCTGACTCCCCTCAGCCATAGAAGGCCCCACTCCTGTATCAGCCCTACTT-CACTCAAGCACAATAGTTGTAGCAGGAGTATTTCTTCTTATCCGCTTTCATCCACTAATAGAGCATAACCA-AACTATTCAAACCCTCACTTTA-TGCTTAGGGGCCATTACTACACTATTTACCGCAATCTGCGCTCTTACACAGAATGATATCAAAAAAATTGT-AGCGTTCTCTACCTCAAGCCAACTAGGCCTAATAATAGTAACAATTGGCATTAACCAGCCCTACTTAGCCTTCTTACACATCTGCACTCAC--GCATTTTTTAAAGCTATACTATTC-ATATGCTCAGGGTCAGTTATCCACAGCCTAAACGATGAACAAGACATTCGAAAAAT s galGal2.chrM 13501 645 + 16775 ATGAGAAGGAGTAGGAATCATGTC-ATTCCTTCTCATTGGATGATGACAAGGACGAGCTGAAGCCAACACAGCTGCACTACAGGCAATAATCTACAACCGAATCGGAGACATTGGCCTCATCCTAAGCATAGCATGACTAGCCTCTTCCCTAAACACCTGAG----AAATTCAACAAATCACCCACCCAAACCAAA-CACCCACCC-----T---CCCCCTCCTTGGCCTAATCCTAGCCGCCACAGGAAAATCCGCTCAATTTGGCCTTCACCCATGACTTCCAGCAGCAATAGAAGGCCCAACCCCTGTCTCCGCCCTACTC-CATTCCAGCACAATAGTAGTTGCTGGAATTTTTTTACTCATCCGCACCCACCCCTTCCTGTCATCCAATAA-AACAGCCCTGACAACGTGCCTA-TGCTTAGGTGCTCTATCAACACTCTTTGCCGCAACATGCGCTCTCACTCAAAACGACATCAAAAAAATCAT-TGCCTTCTCCACTTCAAGCCAACTAGGCCTCATAATAGTCACAATTGGCCTAGACCTCCCCCAACTAGCCTTCCTCCACATCTCAACCCAT--GCCTTCTTTAAAGCTATATTATTC-CTATGCTCCGGCCTAATTATCCACAGCCTCAATGGAGAACAAGACATCCGCAAAAT s danRer1.chrM 13324 651 + 16596 CTGAGAAGGGGTAGGAATCATATC-ATTTTTACTCATTGGCTGATGATTTGGGCGGACAGAGGCTAACACAGCATCTCTACAGGCCGTAATCTACAACCGAATAGGAGACATTGGATTTATCTTAACCTTAGCATGAATAGCAATATACCTCAACTCCTGAG----ACATTCAGCAAATTTTCATTCTTTCAAAAGACTTCGACATGACCAT---TCCCCAAATTGGACTTATTATTGCAGCCACAGGGAAATCAGCCCAATTTACACTTCACCCCTGACTACCATCAGCCATAGAAGGCCCTACACCAGTATCTGCTTTACTT-CACTCTAGCACTATGGTTGTAGCAGGGATTTTCCTTTTAATCCGTCTTCACCCAATTATAGAAACTAACAA-GCTTGCACCAACAATCTGTCTA-TGCCTTGGAGCATTAACAACTCTATTTGCAGCAACCTGTGCTCTAACCCAAAATGATATCAAAAAAATCGT-AGCTTTCTCAACATCAAGCCAACTAGGGCTAATGATAGTAGCAATTGGCCTAAACCAACCACATCTAGCATTTTTCCACATCTGCACTCAC--GCTTTTTTTAAAGCCATATTATTC-TTATGCTCAGGGGCAATTATTCACAGTCTTAACAACGAACAAGACATCCGTAAAAT a score=1898.0 s hg17.chrM 13413 2 + 16571 AG s mm5.chrM 12817 2 + 16299 AG s rn3.chr2 123594432 2 + 258222147 GG s canFam1.chrM 12853 2 + 16727 GG s galGal2.chrM 14146 2 + 16775 AG s danRer1.chrM 13975 2 + 16596 AG a score=97800.0 s hg17.chrM 13415 148 + 16571 GAGGACTACTCAAAACCATACCTCTCACTTCAACCTCCCTCACC-------ATTGGCAGCCTAGCATTAGCAGGAATACCTTTCCTCACAGGTTTCTACTCCAAAGACCACATCATCGAAACCGCAAAC--ATATCATACACAAACGCCTGAGCCCT s panTro1.chr3 35475123 148 - 209662276 GAGGGCTATTCAAGACTTTGCCCCTCACTTC-------CTCATCCTTTATTACTGGCAGTCTTGCACTTACAGGCATGCCTTTCCTTACAAGCTTTTACTCTAAGG-CCTCATCATTGAAACTGCAAACTCAT-TCATACACCAACGCCTGAGCCCT s mm5.chrM 12819 148 + 16299 GAAACATCACAAAAATCATACCATTCACATC-------ATCATGCCTAGTAATCGGAAGCCTCGCCCTCACAGGAATACCATTCCTAACAGGGTTCTACTCAAAAGACCTAATTATTGAAGCAATTAAT--ACCTGCAACACCAACGCCTGAGCCCT s rn3.chr2 123594434 146 + 258222147 GTGACTTAATAAAAGCCCTTCCTTTTACATC-------ATCTTGTCTAATTATCAGTGGACTTGCTTTAACTGGCATACC-TTCCTTACAGGATTTTACCCCAAAACCCTAGTCATTGAGGCCAGTAAC--ATCTAATA-ACCAATTCCTGAGCCTT s canFam1.chrM 12855 148 + 16727 GTGGCCTATTTAAAGTCCTTCCCTTCACCAC-------AACCTCCCTTATTATCGGAAGCCTCGCATTAACAGGCATGCCTTTCCTTACAGGATTCTACTCCAAAGACCTGATCATCGAGTCCGCTAAC--ACGTCGAATACCAACGCCTGAGCCCT s galGal2.chrM 14148 148 + 16775 GATGTCTACAAAAAACCCTCCCAATAACCAC-------CTCCTGCCTAACCATTGGCAACCTCGCTCTAATAGGAACTCCATTCCTAGCAGGCTTCTACTCAAAAGACCTGATCATCGAAAACCTAAAC--ACCTCATACATCAATACCTGAGCCCT s danRer1.chrM 13977 148 + 16596 GGGGAACTTACCACACCCTACCAATAACCAC-------AAACTATTTGACCATCGGGAAAATAGCCCTTATGGGTACCCCCTTCCTTGCAGGATTTTTCTCAAAAGACGCTATCCTAGAAGCAATAACC--ACCTCCCATCTTAACGCCTGAGCCCT a score=20235.0 s hg17.chrM 13563 55 + 16571 ATCTATTACTCTCATCGCTACCTCCCTGACAAGC----------GCCTATAGCACTCGAATAATT s panTro1.chr3 35475271 55 - 209662276 TTCTGTTACTCTTATTGCCACTTCCTTGACA-GCTGTCCATGATACCTATA---------TTATT s mm5.chrM 12967 55 + 16299 ACTAATTACACTAATCGCCACTTCTATAACA-GC---------TATGTACAGCATACGAATCATT s canFam1.chrM 13003 55 + 16727 CTTAATTACACTCGTTGCCACATCCCTAACC-GC---------TGCCTACAGCACCCGAATTATA s galGal2.chrM 14296 55 + 16775 CTCACTTACACTACTTGCCACATCTTTCACT-GC---------AACCTACAGCCTCCGCATAACC s danRer1.chrM 14125 55 + 16596 AACACTAACATTAATCGCCACATCATTTACC-GC---------AGTTTATAGCTTCCGAATAATT a score=63924.0 s hg17.chrM 13618 214 + 16571 CTTCTCACCCTAACAGGTCAACCTCGCTTCCCCACCCT---TACTAACATTAACGAAAATAACCC-CACCCTACTAAACCCCATTAAACGCCTGGCAGCCGGAAGCCTATTCGCAGGATTTCTCATTACTAACAACATTTCCCCCGC----ATCCCCCTTCCAAA--CAACAATCCCCCTCTAC-CTAAAACTCACAGCCCTCGCTGTCACTTTCCTAGGACTTC s panTro1.chr3 35475326 213 - 209662276 TTCTTCGCTCTTATAGGACAACCTTGCTTCACGACTCTGGCTGCTA---TTAATGAAAATAACCC-CTTTCTAATTAACTCAATTAAGCGCCTAACAGTTGGCAGCATATTCACTGGATTCCTCATCACCAACCGTATTATTCCTGCT-TCATCCCC-----AAAAACAACCATACCACTCCAC-CTGAAGCTCACAGCCCTAGGTGTCACCATCTTAGG-CTTC s mm5.chrM 13022 214 + 16299 TACTTCGTAACAATAACAAAACCGCGTTTTCCCCCCCTAATCTCCA---TTAACGAAAATGACCC-AGACCTCATAAACCCAATCAAACGCCTAGCATTCGGAAGCATCTTTGCAGGATTTGTCATCTCATATAATATTCCACCAACCAGCATTCCAGTCC------TCACAATACCATGATTT-TTAAAAACCACAGCCCTAATTATTTCAGTATTAGGATTCC s canFam1.chrM 13058 213 + 16727 TTCTTTGCTCTACTAGGCCAGCCCCGCTTCTCCCCTATAATCCTTA---TCAACGAGAATAATCC-TCTCCTAATTAACTCTATTAAACGACTCCTTATCGGAAGTGTATTTGCAGGGTATATTATCTCCCACAGCATCACACCCACTACCATCCCA----CAGA--TAACTATGCCTCATTAT-CTAAAAATGACAGCCCTTGCAGTAACCACCTTGGG-TTTC s galGal2.chrM 14351 214 + 16775 TTACTAGTCCAAACAGGACACACACGAACCCCCAGCAATCACCCCA---TTAACGAAAACACCCC-CCCAGCCATTCTCCCAATCATACGACTAGCCCTTGGCAGCATTATAGCAGGCCTATTAATCTCATCCCTAATCCTCCCCCCTAAAACCCCT----CCAA--TAACTATACCCACCATC-ACAAAAACTGCTGCCATCATTGTTACAACCCTAGGAATTA s fr1.chrUn 320903859 214 + 349519338 --CTTCGTATCCATAGGCCACCCTCGCTTTAATTCCCTTTCACCAA---TCAATGAAAATAACCCATGCTGTAATTAAACCTATCAAACGACTGGCATGAGGCAGCATTATTGCTGGCCTATTAATCACCACACAACTTCTCCCAACAAAAACACCC----GTAA--TATCAATACCTATAGTTGTTAACACTTACTGCTCTTATCGTCACAATCTTAGGACTCC s danRer1.chrM 14180 211 + 16596 TACTTAGTCTGTTTAGGAAGCCCCCGACACAAGACCTACGAGACAA---TTGATGAAAA---CCA-CATTCCAACCAATACTATTCAACGGCTTGCCTGAGGAAGCATTATTGCAGGATTAATCATCTCATACACTATAATTCCTCTTAAAACACCC----ATTT--TAACCATGCCTATTTAT-CTAAAATTGGCAGCCATTCTAGTAACTCTACTAGGTATTA a score=7350.0 s hg17.chrM 13832 25 + 16571 TAACAGCCCTAGACCTCAAC--TACCT s mm5.chrM 13236 25 + 16299 TAATCGCACTAGAACTAAAC--AACCT s canFam1.chrM 13272 27 + 16727 TCCTGGCACTAGAACTAAACCTTACCT s galGal2.chrM 14565 25 + 16775 TCCTAGCCCTAGAACTCTCA--AGCCT s fr1.chrUn 320904073 25 + 349519338 TAATTGCCCTAGAATTAGCT--TCCTT s danRer1.chrM 14391 25 + 16596 TCTTAGGACTAGAAATTAGT--ACGCT a score=-9799.0 s hg17.chrM 13857 292 + 16571 AACCAACAAACTTAAAATAAAATCCCCACT---ATGCACATTTTATTTCTCCAAC-ATACTCGGATTCTACCCTAGCATC-ACA---CACCGCACAATCCCCTATCTAGGCCTTCTTACGAGCCAAAACCTGCCCCTACTCCTCCTAGACCTAACCTGACTAGAAAAG-CTATTACCTAAAACAATTTCACAGCACCAAATCTC---CACCT---------------CC---ATCATCACCTCAACCCA---AAAAGGCATAATTAAACTTTACTTCCTCTCTTTCTTCTTCCCACTCATCCT-----------------AACCCTACTCCTAATC-------------ACATAA s panTro1.chr3 35475565 287 - 209662276 AACTAATAACCTTAAACCAAAATACCCATT---ACAGACATTCAACTTCTCCAAC-ATACTAGGATTTTATTC----ATCCACAATTCACCATACAACCCTCCACTCAGGCCTATACACAAGCCAAAATCTGGCTTCACTTCTACTAGACCTAATATGACTAGAAAAGTCTAT-ACCAAAGACCATTACACAAC-CCAAATTTC---AGCCT---------------CC---ATTACCATATCTACTCA---GAACGGCCTAATTAAACTCTACTT----TCTTTTTTTATCCCATCCCTTCT-----------------AACTCTGCTCCTAATT-------------ATCTAA s mm5.chrM 13261 286 + 16299 AACCATAAAACTATCAATAAATAAAGCAA----ATCCATATTCATCCTTCTCAACTTTACTGGGGTTTTTCCC----ATCTATTATTCACCGCATTACACCCATAAAATCTCTCAACCTAAGCCTAAAAACATCCCTAACTCTCCTAGACTTGATCTGGTTAGAAAAAACCAT-CCCAAAATCCACCTCAACTCTTCACACAAA---CATAA---------------CC---ACTTTAACAACCAACCA---AAAAGGCTTAATTAAATTGTACTTTATATCATTCCTAATTAACATCATCTT-----------------AATTATTATCTTA-------------------TAC s canFam1.chrM 13299 282 + 16727 --CACAAGGACTCAAATTTAACTATCCTTC---TAATTACTTTAAATTCTCCAGC-CTCCTTGGCTACTATCC----AACCATTATGCACCGCCTCACACCTAAAACAAGTTTAACCATTAGCCAGAAATCAGCATCTATACTTCTGGACTCCATCTGACTAGAAAACATCCT-ACCCAAATCAATCTCATATTTCCAAATAAA---ATCTT---------------CT---ACCCTTATTTCAAATCA---AAAAGGTCTCATCAAACTCTATTTCCTATCGTTCATACTAACTATAATCCT-----------------CAGTCTACTAA---------------------TCC s galGal2.chrM 14598 290 + 16775 CCCTCACTCCCCCAAAACACAATCCCCTC-----------ATAAACTTCTCCTCC-TCCCTAGGCTACTTTAA----CCCCCTAACTCACCGAATTAGCCCCTCAATCCTCCTACATACCGGACAAAAAATTGCATCCCACTTAATCGACATAGCATGGTACAAAAAAATAGG-CCCCGAAGGCCTTGCCAACCTTCATCTCAC---CATAA---------------CCAAAATCTCAACCACACTCCA---CACAGGCCTAATTAAATCTTACCTGGGTTCCTTCGCCCTCACAATCCTTAC-----------------AACGATCCTACTTATC----------CAAAAATAA s fr1.chrUn 320904101 298 + 349519338 CTCCAAACAACTTAAACCTACACCACACCT---GTCCCCCCACCACTTCTCAAAC-ATACTTGGCTTCTTCCC----AACAATTGTACACCGTGCCTCTCCTAAAATTAATCTCATTTTAGGACAAACAATTGCTACCCAAATTATTGACCTAACCTGACTAGAAAAAGTTGG-ACCCAAAACAATTTCATCTATCAATACTCCCCTCATCT---------------CT---ACCATTAGTAACATCCA---ACAAGGATCAATCAAGACATACCTTGTCCTCTTCCTCACGACCCTTGCTCT-----------------ATCAACCCTCGTTCTT----------CTTACCTAA s danRer1.chrM 14416 322 + 16596 AGCTAATAAAATTAACAAAAACACTACCCCAGGAATTCCATTCCACTTTTCAATT-TCACTAATCTTCTTTCC----A---ATCCTTCACCGACTAATCCCTATACGAAAATTATTTATAGGGGAGTCAGCAGCC------------------ACTAAAATTGAAAAATCATG-AAGCGAACTATTCGGACCATGCGGAATTGC---ATTTACATTAATAACAGTGGCC---ACCTTTGTTAAGGACCATCGAATAGCGTCAATCAAGTCTTACCTAGCCGTCTTCCTTACCTCTATTATTCTTAAAATAATAATACTGAAACTATACACTTAAATAGCACGAAGCACACCATAA a score=0.0 s hg17.chrM 14149 1 + 16571 C a score=180.0 s hg17.chrM 14149 1 + 16571 C s panTro1.chr3 35475852 1 - 209662276 T s mm5.chrM 13547 1 + 16299 T s canFam1.chrM 13581 1 + 16727 T a score=10579.0 s hg17.chrM 14150 50 + 16571 CTATT--------CCCCCGA-GCAATCTCAATTACAATATATACACCAACAAACAATGT s panTro1.chr3 35475853 50 - 209662276 CTATT--------ATCCTGA-GTAATTTCAATCACAACATAAATACCAATAAATAATCA s mm5.chrM 13548 51 + 16299 CAATT-------AATCTCGA-GTAATCTCGATAATAATAAAAATACCCGCAAACAAAGA s canFam1.chrM 13582 50 + 16727 TAATT--------ACCACGG-GTAACTTCCATGATAACCAACACACCAATTAATAATGA s fr1.chrUn 320904399 58 + 349519338 CTGCTCGAAGAGCCCCCCGACCCAACCCCCGCACCAGCTCTAATACT-ACAAGCAACGT s danRer1.chrM 14738 50 + 16596 CTAAG--------ACCTCGA-GTAACCTCTAGTACAACAAACAAAGTCAGAAGCAATAC a score=2145.0 s hg17.chrM 14200 5 + 16571 TCAAC s panTro1.chr3 35475903 5 - 209662276 TCAAC s mm5.chrM 13599 5 + 16299 TCACC s canFam1.chrM 13632 5 + 16727 TCAGC s danRer1.chrM 14788 5 + 16596 CCAAG a score=126.0 s hg17.chrM 14200 5 + 16571 TCAAC s danRer1.chrM 14788 5 + 16596 CCAAG a score=2043.0 s hg17.chrM 14205 148 + 16571 CAGTAACCACTACTAATCAACGCCCATAATCATACAAAGC--CCCCGCACCAATAGGATCCTCCCGAATCAACCCTGACCCCTCTCCTTCATAAATTATTCAGCTTCCTACACTATTAAAGTTTACCACAACCACCACCCCATCATACTC s panTro1.chr3 35475908 148 - 209662276 CAGCAACTACCACTAATCAGCATCCATAACTGTACAAGGCAGCCACACAC--ACAGAATCTTCACGCAACAACCCTGCCCCCTCACCCTCAAAAATCGTCCAGCTCTTTATGCTATTAAAATTAATCATGATCCTCACTGCATCATGCTC s mm5.chrM 13604 145 + 16299 CAGCTACTACCATCATTCAAGTAGCACAACTATATATTGC--CGCTACCCCAATCCCTCCTTCCAACATAACTCCAACATCATCAACCTCATACATCAACCAATCTCCCAAACCATCAAGATTAATT---ACTCCAACTTCATCATAATA s rn3.chr8 86333738 140 - 129061546 CAGCCACCATGGTCAACCAAGTCTCACAACTGCATATAGA--TGCTACCCTAGCTGCTTCTCTGTCTAGTCACCCAATCTCATCTCTCTCATAAA--------CACCCCATGTTTTTAAGTTCTACCACCACCCCCACCCCACAGTAACA s canFam1.chrM 13637 146 + 16727 CTGTAACAACCACCAACCAAGTCCCATAACTGTACAGAGC--CGCAATACCCATAGCCTCTTCACTAAAAAACCCAGAGTCCCCCGTATCATAGATCACTCAATCCCCTATTCCATTAAACTTTAATACTACCTCCACCTCGTCATCC-- s fr1.chrUn 320904457 128 + 349519338 CAATAACAA-----GACCCAGGCCCCCAATAGT--AATAC--TCCCCCACCGCTAGAATATATAAGTGAAACCCCGTCCATATCACCTCGAAAAACTGCATCTCAGTCTATCTCTCCAGAA---------ACC----CCTCATCACACCT s danRer1.chrM 14793 132 + 16596 CACAAATCACTAATATTTTTCCACCTGACGAATATATTAT--TGCAACCCCGCTTACATCAGCTCGAATAACAGAAAACTCTTTAAAAGCATCAA-----------CCGATATTAATAA-----ACCAGTGTCACCAGTTAATAAAAACC a score=-17437.0 s hg17.chrM 14353 57 + 16571 TTTCACCCACAGCACCAATCC--TACCTCCATCG--CTAACCCC---ACTAAAACAC---TCACCAA s mm5.chrM 13752 54 + 16299 AAGCACACAAATTAAAAA-----AACCTCTATAA--TCACCCCCAATACTAAAAAAC------CCAA s rn3.chr8 86333883 54 - 129061546 TTGTGTATACAGCCCC-------CAACTCCAGAAATATAACCCTAACAACAAACTAC------CTAA s canFam1.chrM 13783 59 + 16727 TTCAAAATATAGCAAGCAGTCAACAATTCAGACA--ACAAACC-AGTAATAAAAGCC-----GCTAG s fr1.chrUn 320904585 57 + 349519338 ------CTTCATCAAGGACCA--TATTTGTGTAC--AAGATACCAAAAACAAAAAAAAAATATCCAA s danRer1.chrM 14925 52 + 16596 ---CAGCCGCCACAATTA-----CAACCAGACCA--TAAACCATAACACGTCAAAAC-----ACCAC a score=31182.0 s hg17.chrM 14410 85 + 16571 GACCTCAACC--CCTGACCCCCA--TGCCTCAGGATACTCCTCAATAGCCATCGCTGTAGTATATCCAAAGACAACCATCATTCCCCCT s panTro1.chr3 35476113 85 - 209662276 GATATCAATA--CTTGACCCTTA--TGTTTCAGGATACTCCTCAGCAGCCATCACCGTGGTATAGCCATAAACAATCATCATACCACAC s mm5.chrM 13806 85 + 16299 --AATTAATCAGTTAGATCCCCA--AGTCTCTGGATATTCCTCAGTAGCTATAGCAGTCGTATATCCAAACACAACCAACATCCCCCCT s rn3.chr8 86333939 75 - 129061546 TAATTCAATG----AGAACATCA--AGTCTCGGGTTACTTCTCCAAAGCAGT--------TATAATTGAACACAACTAGCATACCACTG s canFam1.chrM 13842 85 + 16727 AACAGCCTTA--TTTGAAACTCA--CACCTCAGGGTATTGCTCAGTAGCCATAGCAGTTGTATAACCAAATACTACTAATATACCCCCC s fr1.chrUn 320904650 87 + 349519338 AAAACCACCT--GTCAACCTGTAGGCGCCTTAGGATCCTTATCTGCAGACAGCGCTGACGAATAAATAAACACAACCAGTATGCCCCCC s danRer1.chrM 14977 76 + 16596 -----------ACGGTCACCCCA--CGCTTCAGGAAAAGGCTCGGCTGCTAGGGCCGCTGAATAAGCAAACACTACAAGCATCCCACCT a score=35925.0 s hg17.chrM 14495 109 + 16571 AAATA---AATTAAAAAAACTATTAAACCCATATAA-CCTCCCC----CAAAATTCAGAATAATAACACACCCGACC----ACACCGCTAA------CAATCAGTACTAA-AC------CCCCATAAATAGGAG s panTro1.chr3 35476198 107 - 209662276 AAATGGGGAATTAAAAAAAC-ATCAACCCCATGAAA-GCACCAC----CAAAATTCA--------ACAAATTCAACCCACAGCACCACTAA------TAATTAGCCCTAG-AC------CTCCGTAAATAGGAG s mm5.chrM 13891 109 + 16299 AAATA---AATTAAAAAAACTATTAAACCTAAAAAC-GATCCAC----CAAACCCTAAAACCATTAAACAACCAACA----AACCCACTAA------CAATTAAACCTAA-AC------CTCCATAAATAGGTG s rn3.chr8 86334585 111 - 129061546 AACTA---CATTAGAAATGCAATTAATCCTAAAAGGTAACCCAG----AAAAATTTATGGCAACTAAATAACACATA----CACCCAGTAA------TACTTAAATCTTGTGT------GCCCATAAATAAGAG s canFam1.chrM 13927 109 + 16727 AAATA---AATTAAAAATACTATCAACCCTAAAAAA-GAACCCC----CAAAATTCAGAACAATCGCACAACCAATC----CCACCGCTAA------TAATTAGCACAAG-CC------CACCATAAATAGGAG s fr1.chrUn 320904737 109 + 349519338 ATATA---AATCATTAACAACACCAAAGACAAGAAA-GTCCCCCCGTGCAAAACTGA----------------AGCC----CCACAGCAAAGAAGTGCAACCAGCACCAA-ATTGAAAACTCCATAAAAAGGAG s danRer1.chrM 15053 109 + 16596 AAATA---AATCAAAAAAAGAATTAGAGACAAAAAT-GAACCCC----CATAACTAACTAAAATTCCACATCCAACC----CCTGCCACAA------CTACTAAACCAAA-TG------CAGCAAAATAAGGAG a score=75856.0 s hg17.chrM 14604 139 + 16571 AAGGCTTAGAAGAAAACCCCACAAACCCCATTACTAAACCCACACTCAACAGAAACAAA------GCATACA---TCATTATTCTCGCACGGACTACAACCACGACCAATGATATGAAAAACCATCGT--TGTATTTCAACTACAAGAAC s panTro1.chr3 35476305 139 - 209662276 AAGATTTCAAAGAGAAACCTACAAATCCTATAACCAAAGTGACACTTAATAAAAATATA------GTATATG---CCATTATTCCCACATGGACTATAATCATGACTAATGACATGAAAAATCATTGT--AGTATTTCAACTATAAGAAG s mm5.chrM 14000 139 + 16299 AAGGCTTTAATGCTAACCCAAGACAACCAACCAAAAATAATGAACTTAAAACAAAAATA------TAATTAT---TCATTATTTCTACACAGCATTCAACTGCGACCAATGACATGAAAAATCATCGT--TGTAATTCAACTACAGAAAC s rn3.chr2 24398790 122 - 258222147 AGGGGTTTGAAGAACATCCTACCAAACCT--------------ACTTAATGTA-----A------GAGTATT---TCATAATTTCCACATAGACTGTAACTGGGAATAATGACACAAAACATCACCACTGTGTACTTTGCCTGTTAGAAT s canFam1.chrM 14036 142 + 16727 ATGGTTTAGTGGCAAAACCCACAAAACTCATCACAAAAACGATACTTAAAATAAATACA------ATGTATGTTATCATTATTCCTACATGGAATTTAACCATGACTAATGACATGAAAAATCATCGT--TGTATTTCAACTATAAGAAC s fr1.chrUn 320904846 139 + 349519338 CAGGATTTGTAGACAACACAA------TTATCACAACCAACATCCCTAATAAAAGAAAAACAAGCGCATAAA---ACATAGTTTCTGCCAGGATTTTAACCAGGACCTATGGCGTGAAAAACCATCGT--TGTTACTCAACTACAAAAAC s danRer1.chrM 15162 139 + 16596 CCGGATTAGAAGCAATAGCAATCATACCCCCAACTAGAGCTGCCATCAAAAAAGACAAA------TAAAATG---CCATAATTCTTACTCAGACTTTAACTGAGACCGGTGACTCGAAAAACCACTGT--TGTAGTTCAACTACAAGAAC a score=846407.0 s hg17.chrM 14743 837 + 16571 --ACC-AATGACC-CCAATAC--GCAAAATTAACCCCCTAATAAAA----TTAATTAACCACTCATTCATCGACCTCCCCACCCCATCCAACATCTCCGCATGATGAAACTTCGGCTCACTCCT-TGGCGCCTGCCTGATCCTCCAAATCACC-------ACAGGACTATTCCTAGCCATACACTACTCACCAGACGCCTCAACCGCCTTTTCATCAATCGCCCACATCACTCGAGACGTAAATTATGGCTGAATCATCCGCTACCTTCACGCCAATGGCGCCTCAATATTCTTTATCTGCCTCTTCCTACACATCGGGCGAGGCCTATATTACGGATCATTT------CTCTACTCAGAAACCTG-----AAACATCGGCATTATCCTCCTGCTTGCAACTATAGCAACAGCCTTCATAGGCTATGTCCTCCCGTGAGGCCAAATATCATTCTGAGGGGCCACAGTAATTACAAACTTACTATCCGCCATCCCATACATTGGGACAGACCTAGTTCAATGAA----TCTGAGGAGGCTACTCAGTAGACAGTCCCACCCTCACACGATTCTTTACCTTTCACTTCATCTTACCCTTCATTATTGCAGCCCTAGCAGCACTCCACCTCCTATTCTTGCACGAAACGGGATCAAACAACCCCCTAGGA-----ATCA---CCTCCCATTCCGATAAAATCACCTTCCACCCTTACTACACAATCAA----------AGACGCCCTCGGCTTACTTCTCTTCCTTCTCTCCTTAATGACATTAACACTATTCTCACCAGACCTCCTAGGCGACCCAGACAATTATACCCTAGCCAACCCCTTAAACACCCCTCCCCACATCAAGCCCGAATGATATTTCCTATTCGCCTA s panTro1.chr3 35476444 837 - 209662276 --GCT-AATGGCC---AATATCTGTAAAACACACCCGCTAATAAAAACTATTAATTA--------TTCATTGATCTTCCCATATCATCTAACCTTTCTATATCATGAAACCTTGGCTCACTTTT-TGGTGCCTGCCTAACCCTCCAAATC--CTTACAGGACAGGACTGCTTTTGGCCATGCACTACACATCAAACACCTCAACTGCCTTCTCTTCAGTCGCTCATATCAGCCAACATGTAAACTTCGGCTGAATGGTTCGCTATTTTCATGCTAATGGCAGTTCAATATTTTTTATCTGCCTCTTCTTACACATTGGCTGAGGTTTATACTATGGATCATTTACATTCCT------AGAAACCTG-----AAATATTGGCATCATCCTCCTACTCAAAACAATGGCAACAGCACTCATAGGCTACATGCTCCCATGAGGCCAGATATCATACTGAGGTGCTACAGTAATTACAAATCTACTATCAGCCATCCCATATATTGGAACTGACCTTGTGCAATAAA----TCTGAGGTGGGTTCTCAGTCGACAAAGCCACCCTTACATGATTCTTCACTTTCCATTTCATCTTA-CCTTCATCATTACAGCCCTAGCAGCTGTTCACCTTTTATTCCTACATGAAACAGGATCTAATAACCCTTCAGGGTTTTCATCAGACCCT--------GACAACATTACCTTCCACCCCTACCATACTACCAA----------AGATATTTTAGGTTTAATTTTTCTCCTCCTCCTCCTAATAATTCTAGTACTATTTTCACCTGACTTCCTGGGCGACCCAGATAACTATGCATTAGCCAGCCCCCTCAACACCCCATCCCACATTAAGCCAGAGTGGTACTTTTTGTTTGCCTA s mm5.chrM 14139 838 + 16299 --ACCTAATGACA---AACATACGAAAAACACACCCATTATTTAAA----ATTATTAACCACTCATTCATTGACCTACCTGCCCCATCCAACATTTCATCATGATGAAACTTTGGGTCCCTTCT-AGGAGTCTGCCTAATAGTCCAAATCATT-------ACAGGTCTTTTCTTAGCCATACACTACACATCAGATACAATAACAGCCTTTTCATCAGTAACACACATTTGTCGAGACGTAAATTACGGGTGACTAATCCGATATATACACGCAAACGGAGCCTCAATATTTTTTATTTGCTTATTCCTTCATGTCGGACGAGGCTTATATTATGGATCATATACATTTAT------AGAAACCTG-----AAACATTGGAGTACTTCTACTGTTCGCAGTCATAGCCACAGCATTTATAGGCTACGTCCTTCCATGAGGACAAATATCATTCTGAGGTGCCACAGTTATTACAAACCTCCTATCAGCCATCCCATATATTGGAACAACCCTAGTCGAATGAA----TTTGAGGGGGCTTCTCAGTAGACAAAGCCACCTTGACCCGATTCTTCGCTTTCCACTTCATCTTACCATTTATTATCGCGGCCCTAGCAATCGTTCACCTCCTCTTCCTCCACGAAACAGGATCAAACAACCCAACAGGATTAAACTCAGATGCA--------GATAAAATTCCATTTCACCCCTACTATACAATCAA----------AGATATCCTAGGTATCCTAATCATATTCTTAATTCTCATAACCCTAGTATTATTTTTCCCAGACATACTAGGAGACCCAGACAACTACATACCAGCTAATCCACTAAACACCCCACCCCATATTAAACCCGAATGATATTTCCTATTTGCATA s rn3.chr2 24398912 776 - 258222147 --ATG-AACAACC---GATACTCCAAAATTCCACTTTTTAACAAAA----ATTAACAATCATTTGTTCATTGATCTACCAGACTGGTAAAACATTTCCGCATGATGAGAGCCTGGATCTGTGGTGGGGAATCTGCCAGGCTCTC----------------A---------TCATAGCCCAGGACTATCCATCACATATAATAATGGCACTCTCTT-----ACCCAAATTTGTCAAGTTGCA----------------TCAGCTGTTTCTATGTGAATAGAACACAAACATTCTTTACCTGCCTGTTAATCCATGAAAGTTGAAGGTCA---TGTGAATTGCATGTTTTTCT------ATAAATCTGGTTAAAAACACTAGGATTTGCTTATTACTCCC--TGATAGCTACAGCATATCTGGCCCATATGTTATTGTAAGGACAAATGGCTTTCTGAGTTCCAACAGTAGTCACAAACTCACTGGCAATGATTCCACATATC---ATTTCACTAATTTTATAGAGTGTTCTGTGGTGGGCA-TGAGATGACAGAAT--GCCTCACTTGTTTTCTCATCATAAAATTTATTTTTTTATTCAT--------CCCTAGTTATTCTG-GTCCCCTGTCTCTCTGTGAGACAAGATACAGGAATCCAC--AGAGTCTCATTTGACTGG--------GGCAAAATCCTGGATCATTTTTGGTGTATAATTAAGCTATCTGGGATGTCTTCTAGGTTTGCTTGTAGTAC-----------------CCAGTGCTATTCTCCTCCAACTTCTTATGATACAGAGACAATCCCATACCAGACAACCCACTTGATATCTTATCTCA-ATCAAGTCAAATAGAAACTT--TGTCTGCCTA s canFam1.chrM 14178 837 + 16727 --ATT-AATGACC---AACATTCGAAAAACCCACCCACTAGCCAAA----ATTGTTAATAACTCATTCATTGACCTCCCAGCGCCGTCTAACATCTCTGCTTGATGGAACTTCGGATCCTTACT-AGGAGTATGCTTGATTCTACAGATTCTA-------ACAGGTTTATTCTTAGCTATGCACTATACATCGGACACAGCCACAGCTTTTTCATCAGTCACCCACATCTGCCGAGACGTTAACTACGGCTGAATTATCCGCTATATGCACGCAAATGGCGCTTCCATATTCTTTATCTGCCTATTCCTACATGTAGGACGAGGCCTATATTACGGATCCTATGTATTCAT------AGAAACATG-----AAACATTGGAATTGTACTATTATTCGCAACCATAGCCACAGCATTCATGGGCTATGTACTACCATGAGGACAAATATCATTTTGAGGAGCAACTGTAATCACTAATCTTCTCTCTGCCATCCCTTATATCGGAACTGACTTAGTAGAATGGA----TCTGAGGCGGCTTCTCAGTGGACAAAGCAACCCTAACACGATTCTTTGCATTCCATTTCATCCTCCCTTTCATCATCGCAGCTCTAGCAATAGTACACCTCCTATTTCTACACGAAACCGGATCCAACAACCCTTCAGGAATCACATCAGACTCA--------GACAAAATTCCATTTCACCCTTACTACACAATCAA----------GGATATCCTAGGAGCCTTACTCCTACTCCTAATCCTAATATCACTAGTTTTATTTTCACCTGACCTATTAGGAGACCCAGATAACTACACCCCTGCAAACCCCCTAAACACCCCTCCACATATTAAACCTGAGTGATATTTTCTATTCGCCTA s galGal2.chrM 14888 840 + 16775 --ACT-AATGGCACCCAACATTCGAAAATCCCACCCCCTACTAAAA----ATAATTAACAACTCCCTAATCGACCTCCCAGCCCCATCCAACATCTCTGCTTGATGAAATTTCGGCTCCCTATT-AGCAGTCTGCCTCATGACCCAAATCCTC-------ACCGGCCTACTACTAGCCATGCACTACACAGCAGACACATCCCTAGCCTTCTCCTCCGTAGCCCACACTTGCCGGAACGTACAATACGGCTGACTCATCCGGAATCTCCACGCAAACGGCGCCTCATTCTTCTTCATCTGTATCTTCCTTCACATCGGACGAGGCCTATACTACGGCTCCTACCTCTACAA------GGAAACCTG-----AAACACAGGAGTAATCCTCCTCCTCACACTCATAGCCACCGCCTTTGTGGGCTATGTTCTCCCATGGGGCCAAATATCATTCTGAGGGGCCACCGTTATCACAAACCTATTCTCAGCAATTCCCTACATTGGACACACCCTAGTAGAGTGAG----CCTGAGGGGGATTTTCAGTCGACAACCCAACCCTTACCCGATTCTTCGCTTTACACTTCCTCCTCCCCTTTGCAATCGCAGGTATTACTATCATCCACCTCACCTTCCTACACGAATCAGGCTCAAACAACCCCCTAGGCATCTCATCCGACTCT--------GACAAAATTCCATTTCACCCATACTACTCCTTCAA----------AGACATTCTGGGCTTAACTCTCATACTCACCCCATTCCTAACACTAGCCCTATTCTCCCCCAACCTCCTAGGAGACCCAGAAAACTTCACCCCAGCAAACCCACTAGTAACCCCCCCACATATCAAACCAGAATGATATTTTCTATTCGCCTA s fr1.chrUn 320904985 837 + 349519338 --ACT-AATGGCC---AGCCTACGCAAAACCCACCCCCTACTAAAA----ATCGTAAACGACATAGTAATTGACCTTCCTACCCCCTCAAACATTTCCGCCTGATGAAACTTTGGCTCTCTACT-CGGATTATGCCTTATTACACAAATCATC-------ACAGGACTGTTCCTTGCAATACACTACACATCCGACATCTCTACCGCCTTTTCATCCGTAGCCCACATTTGCCGAGACGTAAACTACGGCTGACTAATTCGCAATCTACACGCAAACGGTGCCTCATTCTTTTTTATTTGCTTATACTCCCACATCGGCCGAGGTCTTTACTATGGCTCTTACCTAAGTAA------AGAAACCTG-----AAACGTAGGGGTAGTCCTCTTACTTTTAGTAATGGCCACCGCTTTCGTAGGCTACGTTCTCCCATGAGGACAAATATCCTTCTGAGGCGCCACTGTAATTACAAACCTGCTCTCTGCTGTCCCCTACGTAGGAAACACGCTCGTTCAATGAG----TATGAGGAGGCTTTTCAGTAGACAGCGCCACTCTAACACGATTCTTTGCCTTCCACTTCCTCCTCCCATTTATCGTTGCAGCCGCTGCCATCGTACATCTTATTTTTCTTCACGAAACAGGCTCCAACAATCCCCTAGGACTTAATTCAAACGCA--------GACAAAATCCCATTCCACCCATACTTCTCTTACAA----------AGACCTCCTGGGCTTCACAATCATGCTCTCAGCCCTCGCAACACTCGCCCTATTCTCTCCAAACTACCTCGGAGACCCTGACAACTTCACACCAGCCAACCCTCTAGTTACCCCCGCCCACATTAAACCAGAATGGTATTTCCTATTTGCATA s danRer1.chrM 15301 839 + 16596 TGCTT-AATGACA---AGCCTGCGAAAAACACACCCAGTTTTAAAA----ATCGCTAATGACGCATTAGTTGATTTGCCAACGCCACTAAATATTTCAGCGTGATGAAATTTTGGATCTCTCCT-TGGATTATGTCTTATTACACAAATTTTA-------ACAGGACTATTTTTAGCAATACACTACACCTCAGACATCTCAACAGCATTTTCATCTGTTGTGCATATTTGCCGAGATGTAAATTTCGGCTGACTTATTCGGAGCATCCATGCCAATGGGGCTTCCTTCTTCTTCATCTGCCTGTATATTCACATCGCCCGAGGACTATATTACGGATCTTATCTTTATAA------TGAAACTTG-----AAACATCGGAGTAGTCCTGTTCTTACTTGTAATAATAACAGCTTTTGTGGGCTACGTCCTTCCATGGGGCCAAATATCATTCTGAGGGGCCACAGTAATTACTAACCTATTATCGGCCGTTCCTTACGTGGGAGATACCCTAGTGCAATGAA----TCTGAGGGGGATTCTCAGTAGACAATGCAACCCTTACACGATTCTTCGCATTCCACTTTTTATTACCATTTATTATCATCGCCATAGTTATTCTACACTTGCTATTTCTCCACGAAACCGGATCAAATAACCCCCTTGGCCTAAACCCCAACATG--------GATAAAATCCCCTTTCATCCTTATTTTTCAAATAA----------AGACCTCCTTGGTTTTGTAATTATATTATTTTCCCTCTCACTATTAGCACTATTCTCACCAAACCTCTTAGGAGATCCAGAAAATTTCACCCCTGCTAACCCTCTAGTAACACCTCCTCACATTAAACCAGAATGATATTTCCTATTCGCATA a score=109405.0 s hg17.chrM 15580 134 + 16571 CACAATTCTCCGATCCGTCCCTAACAAACTAGGAGGCGTCCTTGCCCTATTACTATCCATC----CTCATCCTAGCAATAATCCCCATCCTCCATATATCCAAACAACAAAGCATAATATTTCGCCCACTAAGCCAAT s panTro1.chr18 72834051 133 - 83875239 TGCAATTCTACGATCCATCCCTAACAAACCAGGAGGTGTACTAGCCC--TTA-TATCC-TCCTTTCTCATTCCAGCAATTAT-CCCATACTTCATACGTCTAAACAATAAAGCATAATATTCTGTCCATTAAGTCAAT s mm5.chrM 14977 134 + 16299 CGCCATTCTACGCTCAATCCCCAATAAACTAGGAGGTGTCCTAGCCTTAATCTTATCTATC----CTAATTTTAGCCCTAATACCTTTCCTTCATACCTCAAAGCAACGAAGCCTAATATTCCGCCCAATCACACAAA s rn3.chr2 24399688 92 - 258222147 ----------------------TGCAAACT-----------TGGCCCCACAG-------TT----TTAATCTTAACTACAGC-TGAGTAGTTCCTGTAGCTAAA-AATGAAGCACAGTATTCTGACCCTTTGACCCTT s canFam1.chrM 15015 134 + 16727 TGCTATCCTACGATCCATTCCTAATAAATTAGGAGGTGTACTCGCCCTAGTATTCTCCATC----CTAATCTTGGCATTCATTCCACTCCTCCACACATCTAAGCAACGCAGCATAATATTCCGGCCCCTTAGCCAAT s galGal2.chrM 15728 134 + 16775 TGCCATCCTACGCTCCATCCCCAACAAACTTGGAGGTGTACTAGCCCTAGCAGCCTCAGTC----CTCATCCTCTTCCTAATCCCCTTCCTCCACAAATCTAAACAACGAACAATAACCTTCCGACCACTCTCCCAAA s fr1.chrUn 320905822 134 + 349519338 CGCAATTCTACGGTCTATCCCCAATAAACTAGGAGGAGTCCTGGCCCTTCTTGCCTCAATC----TTAATTCTTATAGTAGTTCCTTTCTTACACACCTCTAAACAACGAAGCCTAACATTCCGCCCACTATCACAAT s danRer1.chrM 16140 134 + 16596 CGCCATTCTACGATCTATCCCAAACAAACTAGGAGGTGTACTAGCTCTCTTATTTTCCATT----TTAGTATTAATAGTAGTACCAATTTTACACACTTCTAAACAGCGAGGAATAGCATTCCGCCCAGTTACCCAAT a score=123010.0 s hg17.chrM 15714 141 + 16571 CACTTTATTGACTCCTAGCCGCAGACC----TCCTCATTCTAACCTGAATCGGAGGACAACCAGTAAGCTACCCTTTTACCATCATTGGACAAGTAGCATCCGTACTATACTTCACAACAATCCT--AATCCTAATACCAACT-----ATCT s panTro1.chr11 95342837 135 - 123086034 CACTTTATTGATTCCTAGCCGCAGACC----TCCTCGCCCTAACCTGAATCGGAGGACAACCAGTAAGCTATCCCTTCACCATCATCGGACAAGTAGCCTCCGTACTATACTTCACAAC--------AATTCTAATACCAGCC-----ACCT s mm5.chrM 15111 138 + 16299 TTTTGTACTGAATCCTAGTAGCCAACC----TACTTATCTTAACCTGAATTGGGGGCCAACCAGTAGAACACCCATTTATTATCATTGGCCAACTAGCCTCCATCTCATACTTCTCAATCATCTT--AATTCTTATACCA--------ATCT s rn3.chr2 24399786 141 - 258222147 ACTTATTTTAAATCCTAGTAGCTGACCCTCATGCTCATATGAATCTGAATTTTAAG---AGTAGTAA------CTTTTATTA--ATTTTATAAATATTATCCATCCTGTATATTCCCATGCTAATGCAATTTTTAAGCTTAATGGGGGAGCT s canFam1.chrM 15149 140 + 16727 GCCTATTCTGACTTTTAGTCGCCGATC----TTCTCACTTTAACATGAATTGGAGGACAACCAGTTGAGCACCCTTTCATCATTATCGGACAAGTCGCTTCAATCTTATATTTCACCATCTTATT--GATCCTAATACCAAC------AGTT s galGal2.chrM 15862 141 + 16775 CCCTATTCTGACTTCTAGTAGCCAACC----TTCTTATCCTAACCTGAATCGGAAGCCAACCAGTAGAACACCCCTTCATCATCATTGGCCAAATAGCATCCCTCTCTTACTTCACCATCCTACT--TATCCTCTTCCCCACA-----ATCG s fr1.chrUn 320905956 140 + 349519338 TCCTATTCTGAACCCTAATTGCCGACG----TCGTCATCCTAACCTGAATTGGAGGCATACCCGTCGAACATCCTTACATTATTATCGGACAAATTGCCTCAGTACTTTACTTCTCTCTCTTCCT--AATCTTGATGCCAAT------AGCC s danRer1.chrM 16274 141 + 16596 TTCTGTTCTGAACACTGGTAGCAGACA----TGCTTGTACTAACATGAATTGGAGGGATACCAGTAGAACACCCCTACATCATCATTGGACAAATAGCATCAATCTTATATTTTTCACTATTCTT--AGTCTTATTCCCAATT-----ACAG a score=59534.0 s hg17.chrM 15855 162 + 16571 CCCTAATTGAAAACAAAATACTCAA--ATGGGCC---TGTCCTTGTAGTATAAA-CTAATACACCAGTCTTGTAAA-CCGGAGA-CGAAAA--------CCTTTTTCCAAGGACAA----ATCAGAGAAAAAGTCTT--TAACTCCACCATTAGCACCCAAAGCTAAGATTCTAATTTAAACTA s panTro1.chr18 72834325 163 - 83875239 CCCTGATGGAAAATAAGCTATTTAA--ATTAAAC---TACCCTTGTAGTATAAT-TCAATACTCTGGTCTTGTAAA-CCAGAAA-TGGAGA----ATTCCC---TTCCCAGGACAA----CTCAGGCAAAAAGCCTTC-CCACTTCACCGTCAACACCCAAAACTGAAATTCTAA-TTAAACTA s mm5.chrM 15252 163 + 16299 GAATTATCGAAGACAAAATACTAAA--ATTATATCCATGTCTTGATAGTATAAA--CATTACTCTGGTCTTGTAAA-CCTGAAA-TGAAGAT---CTTCTC---TTCTCAAGACA------TCAAGAAGAAGGAGCT--ACTCCCCACCACCAGCACCCAAAGCTGGTATTCTAA-TTAAACTA s rn3.chr2 24399927 140 - 258222147 TCCTAAGTGAAG-------------------------AATTCTTGGAGCATATT-AAACTACTTTGGCTTTGGAAACCCCAAAA-TGGAGA----ACAGTT---CTCTCTAGAGTA----CTCAATCAAGATGCCAT-----TTCTTCCATCACTACCCAACACTGAAATTTTAT-ATGGAATA s canFam1.chrM 15290 160 + 16727 GCGTTATCGAAAACAACCTTCTAAA--ATGAAG----AGTCTTTGTAGTATAAT--CATTACCTTGGTCTTGTAAA-CCAAAAA-TGGAGAGTAACCGCCC---TCCCTAAGAC-------TCAAGGAAGAAGCTCT---TGCTCCACCATCAGCACCCAAAGCTGAGATTCTTC-TTAAACTA s galGal2.chrM 16003 167 + 16775 GAACACTAGAAAACAAAATACTCAACTACTAAAA---TACTCTAATAGTTTATG--AAAAACATTGGTCTTGTAAA-CCAAAAACTGAAGACT--CCACCC---TTCTTAGAGTA------TCAGAAAAGGAGGGCTCAAACCTCCATCTCCAGCTCCCAAAGCTGGTATTTTCAAATAAACTA s fr1.chrUn 320906097 166 + 349519338 GTTGACTAGAAAACAAAATACTAAA--CTAACA----AGCATTAGTAGCTCAGATTCAGAGCGTCGGTCTTGTAAA-CCGAATG-TCGGGGGTTAAAGTCC---CCCCTTATGC-------TCAAAAAGAAGGGACTTCAACCCCCACCACTGGCTCCCAAAGCCAGCATTCTTAATTAAACTA s danRer1.chrM 16415 174 + 16596 GGATTTTAGAGAATAAGGCACTCCA--ATGAAGC---TGCCCTAGTAGCTTAGTTTTAAAGCATCGGTCTTGTAAT-CCGAAGA-TCGGAGGTTAGACCCC---TCCCTAGCGCTAAATTACCAGAAAAGAGAGATTTTAACTCACACCCCTGACTCCCAAAGCCAGGATTCTAAATTAAACTA a score=-1650.0 s hg17.chrM 16017 3 + 16571 -TTC s panTro1.chr18 72834488 3 - 83875239 -TTC s rn3.chr2 24400068 2 - 258222147 -TT- s canFam1.chrM 15450 3 + 16727 -TTC s galGal2.chrM 16170 3 + 16775 -CTC s fr1.chrUn 320906264 2 + 349519338 -TT- s danRer1.chrM 16589 3 + 16596 TTT- a score=4076.0 s hg17.chrM 16017 7 + 16571 TTCTCTG s rn3.chr2 24400067 7 - 258222147 ATTTGTA s canFam1.chrM 15450 7 + 16727 TTCCCTG s galGal2.chrM 16170 7 + 16775 CTCTCTG s fr1.chrUn 320906263 7 + 349519338 CTTTTTG s danRer1.chrM 16589 7 + 16596 TTTTCTG a score=4510.0 s hg17.chrM 16020 4 + 16571 TCTG s panTro1.chr11 95343137 4 - 123086034 TCTG s rn3.chr2 24400070 4 - 258222147 TGTA s canFam1.chrM 15453 4 + 16727 CCTG s galGal2.chrM 16173 4 + 16775 TCTG s fr1.chrUn 320906266 4 + 349519338 TTTG s danRer1.chrM 16592 4 + 16596 TCTG a score=-745.0 s hg17.chrM 16024 2 + 16571 TT s panTro1.chr11 95343141 2 - 123086034 TT s rn3.chr2 24400074 2 - 258222147 TT s canFam1.chrM 15457 2 + 16727 AC s galGal2.chrM 16177 2 + 16775 AA s fr1.chrUn 320906270 2 + 349519338 AT a score=-677.0 s hg17.chrM 16024 2 + 16571 TT s rn3.chr2 24400074 2 - 258222147 TT s canFam1.chrM 15457 2 + 16727 AC s galGal2.chrM 16177 2 + 16775 AA s fr1.chrUn 320906270 2 + 349519338 AT a score=0.0 s hg17.chrM 16026 12 + 16571 CTTTCATGGGGA a score=-2533.0 s hg17.chrM 16026 1 + 16571 C--- s panTro1.chr11 95343143 1 - 123086034 C--- s rn3.chr2 24400076 1 - 258222147 T--- s canFam1.chrM 15459 1 + 16727 A--- s galGal2.chrM 16179 4 + 16775 ACCC a score=-1884.0 s hg17.chrM 16026 1 + 16571 C--- s rn3.chr2 24400076 1 - 258222147 T--- s canFam1.chrM 15459 1 + 16727 A--- s galGal2.chrM 16179 4 + 16775 ACCC a score=-1714.0 s hg17.chrM 16027 11 + 16571 TTTCATG------GGGA s panTro1.chr11 95343144 11 - 123086034 TTTCATG------GGGA s mm5.chrM 15415 11 + 16299 CTTCTTG------AGTA s rn3.chr2 24400077 17 - 258222147 TTTTCTAACAGACAGAA s galGal2.chrM 16183 3 + 16775 --------------TTA a score=-13109.0 s hg17.chrM 16038 35 + 16571 AGCAGATTT-----GGGTACCA--CCCAAG--TATTGACTCACC s panTro1.chr11 95343155 35 - 123086034 AGCAAATTT-----GGGTACCA--CCCAAG--TATTGGCTCACC s mm5.chrM 15426 25 + 16299 CATAAATTT-----ACATAGTA--CAACAG--TA---------- s rn3.chr2 24400094 42 - 258222147 AACAGACCTTTTAAAAGTACTAGGTCCAAA--TTTCCACTTACC s canFam1.chrM 15460 26 + 16727 --------------CCCCTACA--TTCATA--TATTGAATCACC s galGal2.chrM 16186 37 + 16775 AACCGCCCG-----AATTGCCC--CCCGAGACAACCCACGCACA s fr1.chrUn 320906272 21 + 349519338 AATACATAT-----ATGTATTA--TCCC---------------- a score=-154.0 s hg17.chrM 16073 3 + 16571 CAT s panTro1.chr11 95343190 3 - 123086034 CAT s mm5.chrM 15451 3 + 16299 CAT s canFam1.chrM 15488 2 + 16727 TA- s galGal2.chrM 16231 1 + 16775 --T s fr1.chrUn 320906293 3 + 349519338 CAT a score=0.0 s hg17.chrM 16076 9 + 16571 CAACAACCG a score=1632.0 s hg17.chrM 16076 6 + 16571 -CAACAA s panTro1.chr11 95343193 6 - 123086034 -CAACAA s galGal2.chrM 16232 7 + 16775 ACAACAA a score=228.0 s hg17.chrM 16082 3 + 16571 CCG s panTro1.chr11 95343199 3 - 123086034 CCG s rn3.chr7 48860662 3 - 143082968 CTG s canFam1.chrM 15492 3 + 16727 GTG s galGal2.chrM 16239 1 + 16775 --A a score=-66332.0 s hg17.chrM 16085 177 + 16571 CTAT----GTATTTC---GTACATTA--CTGCCAGCCACCATGAATATTGTACGGTACCATAAATACTTGACCACCTGTAGTACATA-AAAACCCAACCCACATCAAACCCCCCCCCCCCAT--------GCTTACAAGCAAGTACAGCAAT-------CAACCTTCAACTATCACACATCAAC--TGCAACTCCAAAGCCA---CC s panTro1.chr11 95343202 182 - 123086034 CCAT----GTATATC---GTGCATTA--CTGCCAGCCACCATGAGTATTATATAGTACCATAAATACTTGAACATCCATAGTACATACAAAACCCATCCCACATTAAA-ACCTCCTCCCAAT--------GCTTACAAGCACGAACAGCGATTGGCCCACA-----CAACTACCGAACATTAAC--CCTATCTCCAAAGACAATCCC s mm5.chrM 15454 84 + 16299 TTAT----GTATATC---GTACATTA-----------------------------------AACTATTT----------------------------------------------TCCCCAA--------GCATATAAGCTAGTACATTAA---------------------------ATCAATGGTTCAGGTCATAAAATAATCAT s rn3.chr7 48860665 152 - 143082968 GCAT----GCA-------GTGCATAA------------TAATGTGTATAGTGCA-------TACTACATTTATGTATATAATATATT--------------AATTTATTTCCCCTCCCATATAATAAAGAGCTAACTACTAAATACAGAAG-----ACTAAACATTCTAATACAAGTAAATATT--TTCATTAACAGGGCCA----T s canFam1.chrM 15495 138 + 16727 CTATGTCAGTATCTCCAGGTAAACCCTTCTCCCCTCCCCTATGTACGTCGTGCATT-----AATGGTTT----------------------------------------------GCCCCAT--------GCATATAAGCATGTACATAAT-----ATTATATCCTTACATAGGACATATTAAC--TCAATCTCATAATTCA---CT s galGal2.chrM 16240 163 + 16775 CAAA----GCTAACA---ACAAACCT--CACCCAGCCACCAAAAACAACCCAACCCCACATGAATA---AAACACCGCAACTCCACTAAAATCCAACCGAGCAAAAGACACACCCCCGCCAT--------------------CAACAGTAA--------CCACCCCCACCTTTCAAAAATCAAC-GAGCCCTCCCAGAACCA---CC s fr1.chrUn 320906296 126 + 349519338 TCAT----ATATATT---AAACATTA-----------ATATAATGCATAACTAAGACATAGTACTATATATTCACCTATAATTCCTATAA---------------------------CCCAT-------------AAAGCAAGTACAGAAA-----ACTAA-------------AAATGCTAAA--AGCATGACTAGAAAAA---TC a score=-2739.0 s hg17.chrM 16262 5 + 16571 --CCTCA s panTro1.chr11 95343384 5 - 123086034 --CAACA s mm5.chrM 15538 5 + 16299 --CAACA s rn3.chr7 48860817 5 - 143082968 --TATCA s galGal2.chrM 16414 4 + 16775 --CACC- s fr1.chrUn 320906422 5 + 349519338 CCTAA-- a score=0.0 s hg17.chrM 16267 6 + 16571 CCCACT a score=-2037.0 s hg17.chrM 16267 6 + 16571 CCCACT s panTro1.chr11 95343389 3 - 123086034 C---CT s mm5.chrM 15543 1 + 16299 T----- s rn3.chr7 48860822 6 - 143082968 TCCAAT a score=-14864.0 s hg17.chrM 16273 24 + 16571 AGGATACCAACAA---ACCTACCCACC- s panTro1.chr11 95343392 24 - 123086034 AGAATATCAACAG---ACCTGCACATC- s mm5.chrM 15544 17 + 16299 ---AAATCAATA-------TATATACC- s rn3.chr7 48860828 12 - 143082968 GTCATATCAATG---------------- s canFam1.chr38 16296834 26 - 26492144 TGAATATCTACAGC-AAAATTAACATG- s galGal2.chrM 16418 24 + 16775 ---AAGACAAAACCTAGCCCATACCCC- s fr1.chrUn 320906427 24 + 349519338 AAATTGTTGAAG----AACTGAACGAAA a score=-1707.0 s hg17.chrM 16297 28 + 16571 CTTAACAG---------TACATAGTAC-------ATAAAGTCAT s panTro1.chr11 95343416 29 - 123086034 CTTAACAG--------ATACATAGCAC-------ATACAGTCAT s mm5.chrM 15561 44 + 16299 ATGAATATTATCTTAAACACATTAAACTAATGTTATAAGGACAT s rn3.chr7 48860840 18 - 143082968 ----------------ATACATAG----------ACATATCTAT s canFam1.chr38 16296860 28 - 26492144 ATTAATAT---------TACATAGCAC-------ATAATATTAT s fr1.chrUn 320906451 24 + 349519338 ------------TTTAAGACCGAACA--------ATAAACTCAT a score=831.0 s hg17.chrM 16325 9 + 16571 -------TTACCGTAC s panTro1.chr11 95343445 9 - 123086034 -------TTATCGTAC s mm5.chrM 15605 16 + 16299 ATCTGTGTTATCTGAC s rn3.chr7 48860858 10 - 143082968 ------GTTATTTTAC s canFam1.chr38 16296888 9 - 26492144 -------TGGTTGGAT a score=7636.0 s hg17.chrM 16334 51 + 16571 ATAGCACATTACAGTCA-AATCCCTTCTCGTCCCCATG------------GATGACCCCCCTCA s panTro1.chrUn_random 225547893 51 - 240967748 ATAGCGCATTACAGTCA-AATCCCTCCTTGCCCCCACG------------GATGCCCCCCCTCA s mm5.chrM 15621 51 + 16299 ATA-CACCATACAGTCATAAACTCTTCTCTTCCATATG------------ACTATCCCCTTCCC s rn3.chr7 48860868 51 - 143082968 ATAAACCGTTCTAGTCA-AATTACTTTTTTGGCATATA------------GCTATCTCCTTCTC s canFam1.chr38 16296897 62 - 26492144 ATACCCCATTA-AGTCA-AATTATTACCAGACAACATGCCTATCATAACTGATAACCACATTTA a score=1592.0 s hg17.chrM 16385 18 + 16571 GATAGGGGTCCCTTGACC s panTro1.chrUn_random 225547944 18 - 240967748 GATAGGAATCCCTTAATC s mm5.chrM 15672 17 + 16299 CATTTG-GTCTATTAATC s rn3.chr7 48860919 16 - 143082968 AATTGG--TCTGTTCATC s canFam1.chrM 15671 15 + 16727 AATAAGGG---CTTAATC a score=10758.0 s hg17.chrM 16403 30 + 16571 ACCATCCTCCGTGAAATCAATATCCC------GCAC s panTro1.chr14 78287170 35 + 97804244 ACCAACCTCCAAGAAATCATCATCCCTCTGGGGCA- s mm5.chrM 15690 30 + 16299 ACCATCCTCCGTGAAACCAACAACCC------GCCC s rn3.chr7 48860936 30 - 143082968 ACCATCCTCTGAGAAACCAACAACCC------AACA s canFam1.chrM 15686 30 + 16727 ACCATGCCTCGAGAAACCATCAACCC------TTGC a score=53286.0 s hg17.chrM 16433 96 + 16571 AAG-AGTGCTACTCTCCTCGCTCCGGGCCCAT-AACACTTGGGGGTAGCTAAAGTG-AACTGTATCCGACATCTGGTTCCTACTTCAGGGCCATAAA---GC s panTro1.chr14 78287205 92 + 97804244 ------TGTTACTCTCCTCACTCTGGGCCCAT-AACACTTGGGAGTGACTATACTGAAACTATACCTGGCATCTGGTTCTTACCTCAGGGCCAtgaa---ac s mm5.chrM 15720 97 + 16299 ACC-AATGCCCCTCTTCTCGCTCCGGGCCCAT-TAAACTTGGGGGTAGCTAAACTGAAACTTTATCAGACATCTGGTTCTTACTTCAGGGCCATCAA---AT s rn3.chr7 48860966 98 - 143082968 ATC-TATGCCCATCTTCCTGCTCTAGGCCCATCTTGACTTGGGGGTAGCTAATATGAGACTTTATCAGACATCTGCTTTTTACTCTAGGGCCATTAA---AT s canFam1.chrM 15716 102 + 16727 TCGTAATGTCCCTCTTCTCGCTCCGGGCCCATACTAACGTGGGGGTTACTATCATGAAACTATACCTGGCATCTGGTTCTTACTTCAGGGCCATAACCTTAT s fr1.chrUn 320906557 96 + 349519338 ATG-CATATTATTATTGAAGGTGAGGGACAAT-AACAGTGGGGGTTTCACTAAATG-AACTATTCCTGGCATTTGGTTCCTACTTCAGGGCCATTAA---TC a score=8581.0 s hg17.chrM 16529 36 + 16571 -----------CTAA-ATAGCCCACACGTTCCCCTTAAATAAGACATC s panTro1.chr14 78287297 48 + 97804244 taagattgaaactaagattgCCCACACATTTCACTTAAATAAGACGTC s mm5.chrM 15817 37 + 16299 -----------GCGTTATCGCCCATACGTTCCCCTTAAATAAGACATC s rn3.chr7 48861064 36 - 143082968 -----------GCATTATCAACCATGTGTTCC-CTCAAATAAAACATC s canFam1.chrM 15818 37 + 16727 -----------TTACTCCAATCCTACTAATTCTCGCAAATGGGACATC a score=2403.0 s hg17.chrM 16565 6 + 16571 ACGATG s mm5.chrM 15854 6 + 16299 TCGATG s rn3.chr7 48861100 6 - 143082968 TCAATG s canFam1.chrM 15855 6 + 16727 TCGATG