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comparison check_id_map.xml @ 2:2280c43de0e2 draft

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check_id_map 1.6.1
author Davide Albanese <davide.albanese@gmail.com>
date Fri, 08 Mar 2013 17:14:33 +0100
parents 0d8e091eb3e1
children 3e5da170ffdd
comparison
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1:5ad4e9215528 2:2280c43de0e2
1 <?xml version="1.0" ?> 1 <?xml version="1.0" ?>
2 <tool id="check_id_map" name="Check ID Map" version="1.6.0"> 2 <tool id="check_id_map" name="Check ID Map" version="1.6.1">
3 <description> 3 <description>
4 Checks user's metadata mapping file for required data, valid 4 Checks user's metadata mapping file for required data, valid
5 format 5 format
6 </description> 6 </description>
7 <requirements> 7 <requirements>
56 <data format="txt" name="out_log" label="${tool.name} on ${mapping_fp.name}"/> 56 <data format="txt" name="out_log" label="${tool.name} on ${mapping_fp.name}"/>
57 <data format="tabular" name="out_txt" label="Corrected ${mapping_fp.name}"/> 57 <data format="tabular" name="out_txt" label="Corrected ${mapping_fp.name}"/>
58 </outputs> 58 </outputs>
59 <help> 59 <help>
60 60
61 Specifically, we check that: 61 Check ID Map checks::
62 62
63 1. The BarcodeSequence, LinkerPrimerSequences, and ReversePrimer fields 63 1. The BarcodeSequence, LinkerPrimerSequences, and ReversePrimer fields
64 have valid IUPAC DNA characters, and BarcodeSequence characters 64 have valid IUPAC DNA characters, and BarcodeSequence characters
65 are non-degenerate (error) 65 are non-degenerate (error)
66 66