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1 ===============================================================================
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2
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3 CoreBio Weblogo and Codonlogo : Copyrights and Licenses
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4
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5 ===============================================================================
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6
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7 This package is distributed under the new BSD Open Source License. Much
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8 of the code was written by Gavin E. Crooks, Gary Hon, Steven Brenner, John-Marc
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9 Chandonia, Liana Lareau, David Ding, Clare Gollnick,David Murphy and other contributers.
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10
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11
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12
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13 Copyright Notice
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14 ================
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15 Copyright (c) 2006, The Regents of the University of California, through
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16 Lawrence Berkeley National Laboratory (subject to receipt of any required
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17 approvals from the U.S. Dept. of Energy). All rights reserved.
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18
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19 Parts of this software package are covered by the individual copyrights of the
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20 contributers. Please refer to individual source code files for further details.
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21
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22 NOTICE. This software was developed under funding from the U.S. Department of
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23 Energy. As such, the U.S. Government has been granted for itself and others
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24 acting on its behalf a paid-up, nonexclusive, irrevocable, worldwide license in
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25 the Software to reproduce, prepare derivative works, and perform publicly and
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26 display publicly. Beginning five (5) years after the date permission to assert
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27 copyright is obtained from the U.S. Department of Energy, and subject to any
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28 subsequent five (5) year renewals, the U.S. Government is granted for itself
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29 and others acting on its behalf a paid-up, nonexclusive, irrevocable, worldwide
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30 license in the Software to reproduce, prepare derivative works, distribute
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31 copies to the public, perform publicly and display publicly, and to permit
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32 others to do so.
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33
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34
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35 The new BSD Open Source License
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36 ===============================
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37
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38 # Copyright (c) 2006, The Regents of the University of California, through
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39 # Lawrence Berkeley National Laboratory (subject to receipt of any required
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40 # approvals from the U.S. Dept. of Energy). All rights reserved.
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41
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42 # This software is distributed under the new BSD Open Source License.
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43 # <http://www.opensource.org/licenses/bsd-license.html>
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44 #
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45 # Redistribution and use in source and binary forms, with or without
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46 # modification, are permitted provided that the following conditions are met:
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47 #
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48 # (1) Redistributions of source code must retain the above copyright notice,
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49 # this list of conditions and the following disclaimer.
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50 #
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51 # (2) Redistributions in binary form must reproduce the above copyright
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52 # notice, this list of conditions and the following disclaimer in the
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53 # documentation and or other materials provided with the distribution.
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54 #
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55 # (3) Neither the name of the University of California, Lawrence Berkeley
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56 # National Laboratory, U.S. Dept. of Energy nor the names of its contributors
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57 # may be used to endorse or promote products derived from this software
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58 # without specific prior written permission.
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59 #
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60 # THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS"
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61 # AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE
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62 # IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE
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63 # ARE DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT OWNER OR CONTRIBUTORS BE
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64 # LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR
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65 # CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF
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66 # SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS
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67 # INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN
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68 # CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE)
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69 # ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE
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70 # POSSIBILITY OF SUCH DAMAGE.
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71
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72
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73
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74 The MIT Open Source License
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75 ===========================
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76
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77 Parts of the code are covered by the MIT license, which is equivalent to the
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78 BSD license apart from the third, no promotion clause. Please refer to
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79 individual source code files for further details.
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80
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81 # Copyright (c) 2003-2004 The Regents of the University of California.
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82 # Copyright (c) 2005 Gavin E. Crooks
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83 # Copyright (c) 2006 David Ding
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84 # Copyright (c) 2006 Clare Gollnick
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85 # Copyright (c) 2002-2005 ActiveState Corp.
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86
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87 # This software is distributed under the MIT Open Source License.
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88 # <http://www.opensource.org/licenses/mit-license.html>
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89 #
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90 # Permission is hereby granted, free of charge, to any person obtaining a
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91 # copy of this software and associated documentation files (the "Software"),
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92 # to deal in the Software without restriction, including without limitation
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93 # the rights to use, copy, modify, merge, publish, distribute, sublicense,
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94 # and/or sell copies of the Software, and to permit persons to whom the
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95 # Software is furnished to do so, subject to the following conditions:
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96 #
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97 # The above copyright notice and this permission notice shall be included
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98 # in all copies or substantial portions of the Software.
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99 #
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100 # THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR
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101 # IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY,
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102 # FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE
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103 # AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER
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104 # LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING
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105 # FROM, OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS
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106 # IN THE SOFTWARE.
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107
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108
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109
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110 The Biopython License (biopython.org)
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111 =====================================
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112 Parts of the code are covered by the biopython license, which is functionally
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113 equivalent to the BSD license.
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114
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115
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116 # Biopython License Agreement
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117 #
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118 # Permission to use, copy, modify, and distribute this software and its
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119 # documentation with or without modifications and for any purpose and
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120 # without fee is hereby granted, provided that any copyright notices
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121 # appear in all copies and that both those copyright notices and this
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122 # permission notice appear in supporting documentation, and that the
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123 # names of the contributors or copyright holders not be used in
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124 # advertising or publicity pertaining to distribution of the software
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125 # without specific prior permission.
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126
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127 # THE CONTRIBUTORS AND COPYRIGHT HOLDERS OF THIS SOFTWARE DISCLAIM ALL
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128 # WARRANTIES WITH REGARD TO THIS SOFTWARE, INCLUDING ALL IMPLIED
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129 # WARRANTIES OF MERCHANTABILITY AND FITNESS, IN NO EVENT SHALL THE
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130 # CONTRIBUTORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY SPECIAL, INDIRECT
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131 # OR CONSEQUENTIAL DAMAGES OR ANY DAMAGES WHATSOEVER RESULTING FROM LOSS
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132 # OF USE, DATA OR PROFITS, WHETHER IN AN ACTION OF CONTRACT, NEGLIGENCE
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133 # OR OTHER TORTIOUS ACTION, ARISING OUT OF OR IN CONNECTION WITH THE USE
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134 # OR PERFORMANCE OF THIS SOFTWARE.
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135
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136
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