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2 "http://www.w3.org/TR/html4/transitional.dtd">
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3
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4 <html>
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5 <head>
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6 <link rel="stylesheet" type="text/css" href="logo.css" >
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7 <title>CodonLogo - Examples</title>
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8 <meta name="author" content="Gavin E. Crooks" >
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9 <meta name="author" content="Steven E. Brenner" >
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10 <meta name="ID" content="$ID:" >
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11
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12 <style type="text/css">
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13 img {
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14 display: block;
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15 margin-left: auto;
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16 margin-right: auto }
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17
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18 </style>
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19 </head>
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20
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21 <body>
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22
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23 <table width="80%" border = '0' cellspacing='0' cellpadding='1' align="center">
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24 <tr><td >
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25 <h1> CodonLogo 1.0: Examples</h1>
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26
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27 </td><td align = "right">
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28 ·
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29 <a href="./">about</a> ·
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30 <a href="create.cgi">create</a> ·
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31 <a class="selected" href="examples.html">examples</a> ·
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32 <a href="manual.html">manual</a> ·
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33 <br>
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34
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35 </td></tr>
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36
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37
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38 <tr><td colspan="2" class="discourse" >
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39
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40 <ul>
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41 <li> <a href="#CAP">CAP HTH motif</a> </li>
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42 <li> <a href="#trans">Transcription Factors</a> </li>
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43 <li> <a href="#promoters"><i>E. coli</i> Promoters</a> </li>
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44 <li> <a href="#globins">Globins</a> </li>
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45 <li> <a href="#HTH">HTH motif</a> </li>
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46 <li> <a href="#splice">Splice Signals</a> </li>
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47 </ul>
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48 <p>
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49 The <strong>Edit Logo</strong> buttons will transfer the relevant
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50 sequence data to the <a class="in" href="create.cgi">Logo creation form</a>.
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51 There you can examine the sequence data and recreate the logo for
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52 yourself.
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53 <!--Additional examples can be found at the
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54 <a href="http://www.lecb.ncifcrf.gov/~toms/sequencelogo.html">Sequence Logo
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55 Gallery</a>.-->
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56 </p>
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57
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58
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59 <!--<hr >
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60 <a name="CAP"></a>
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61 <a name="CAP_HTH"></a>
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62 <h2>Catobolite Activator Protein (CAP)</h2>
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63
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64 <img alt="Catobolite Activator Protein (CAP) Logo" src="examples/cap_hth.png">
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65 <p>
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66 The helix-turn-helix motif from the CAP family of homodimeric DNA
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67 binding proteins. CAP (Catabolite Activator Protein, also known as
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68 CRP for cAMP Receptor Protein) is a transcription promoter that binds
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69 at more than 100 sites within the <i>E. coli</i> genome. Residues 1-7
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70 form the first helix, 8-11 the turn and 12-20 form the DNA recognition
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71 helix. The glycine at position 9 appears to be
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72 critical in forming the turn. Positions 4, 8, 10, 15 and 19 are
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73 partially or completely buried, and therefore tend to be populated by
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74 hydrophobic amino acids, which are colored black. Positions 11-14, 17
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75 and 20 interact directly with bases in the major groove
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76 and are critical to the sequence specific binding of the
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77 protein. The data for this logo consists of 100 sequences from the
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78 full Pfam alignment of this family (Accession number
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79 PF00325). A few sequences with rare insertions were removed for
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80 convenience.
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81 </p>-->
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82
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83 <!--
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84 # Pfam 7.1 crp
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85 # Accession number: PF00325
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86 # Bacterial regulatory proteins, crp family
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87 #
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88 # Description
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89 # Numerous bacterial transcription regulatory
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90 # proteins bind DNA via a helix-turn-helix (HTH)
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91 # motif. These proteins are very diverse, but
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92 # for convenience may be grouped into subfamilies on
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93 # the basis of sequence similarity. One such
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94 # family groups together a range of proteins, including
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95 # anr, crp, clp, cysR, fixK, flp, fnr, fnrN, hlyX and
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96 # ntcA [MEDLINE:91064083], [MEDLINE:93181282],
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97 # [MEDLINE:91008963]. Within this family, the HTH motif is situated
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98 # towards the C-terminus.
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99 # This is the full Pfam alignment, less a couple of inserts
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100 # 102 sequences.
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101 #
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102 # http://pfam.wustl.edu/cgi-bin/getdesc?name=crp
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103 #
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104 # Introduction to protein structure, 1st edition, contains
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105 # some more information.
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106 # First number is sequence number is -5
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107 # First Helix: 1-7, Turn: 8-11, 2nd (DNA recognition) 12-20
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108 #
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109 -->
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110
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111 <!--
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112 <form method="post" action="create.cgi">
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113 <input type="submit" name="cmd_edit" value="Edit Logo" >
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114 <input type="hidden" name="logo_title" value="The DNA-binding helix-turn-helix motif of the CAP family" >
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115 <input type="hidden" name="first_index" value="-5" >
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116 <input type="hidden" name="logo_start" value="1" >
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117 <input type="hidden" name="logo_end" value="20" >
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118 <input type="hidden" name="show_xaxis" value="true" >
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119 <input type="hidden" name="show_yaxis" value="true" >
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120 <input type="hidden" name="show_errorbars" value="true" >
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121 <input type="hidden" name="show_fineprint" value="true" >
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122 <input type="hidden" name="scale_width" value="true" >
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123 <input type="hidden" name="sequences" value=">Q9EXQ1/196-227
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124 LTMT.-RGDIGNYLGLTVETISRLLGRFQKLGVL
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125 >Q46158/72-92
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126 LTMT.-RGDIGNYLGLTVETISR-----------
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127 >Q46157/72-92
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128 LTMT.-RGDIGNYLGLTVETISR-----------
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129 >Q46159/72-92
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130 LTMT.-RGDIGNYLGLTVETISR-----------
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131 >Q47948/72-92
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132 LTMT.-RGDIGNYLGLTVETISR-----------
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133 >FNR_HAEIN/196-227
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134 LTMT.-RGDIGNYLGLTVETISRLLGRFQKLGVI
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135 >ETRA_SHEPU/193-224
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136 LTMT.-RGDIGNYLGLTVETISRLLGRFQKSGLI
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137 >FNR_SALTY/193-224
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138 LTMT.-RGDIGNYLGLTVETISRLLGRFQKSGML
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139 >Q9LA24/207-238
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140 LTMT.-RGDIGNYLGLTVETISRLLGRFQKSGML
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141 >Q9AQ50/193-224
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142 LTMT.-RGDIGNYLGLTVETISRLLGRFQKSGML
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143 >FNR_ECOLI/193-224
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144 LTMT.-RGDIGNYLGLTVETISRLLGRFQKSGML
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145 >HLYX_ACTPL/192-223
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146 LTMT.-RGDIGNYLGLTIETISRLLGRFQKSGMI
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147 >O31204/192-223
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148 LTMT.-RGDIGNYLGLTIETISRLLGRFQKSGMI
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149 >Q9L801/192-223
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150 LTMT.-RGDIGNYLGLTIETISRLLGRFQKSGMI
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151 >Q9KS27/193-224
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152 LTMT.-RGDIGNYLGLTVETISRLLGRFQKSEIL
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153 >Q9CMY2/212-243
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154 LTMT.-RGDIGNYLGLTVETISRLLGRLQKMGIL
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155 >Q44500/188-219
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156 LAMS.-RNEIGNYLGLAVETVSRVFSRFQQNELI
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157 >ANR_PSEAE/188-219
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158 LAMS.-RNEIGNYLGLAVETVSRVFTRFQQNGLI
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159 >O85222/188-219
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160 LSMS.-RNEIGNYLGLAVETVSRVFTRFQQNELI
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161 >FNRA_PSEST/188-219
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162 LPMS.-RNEIGNYLGLAVETVSRVFTRFQQNGLL
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163 >BTR_BORPE/186-217
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164 VRMS.-REEIGNYLGLTLETVSRLFSRFGREGLI
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165 >Q9JQQ8/187-218
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166 LRMS.-REEIGSYLGLKLETVSRTLSKFHQEGLI
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167 >O69245/180-211
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168 LPMC.-RRDIGDYLGLTLETVSRALSQLHTQGIL
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169 >Q9AMR4/161-192
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170 LPMS.-RRDIADYLGLTVETVSRAVSQLHTDGVL
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171 >FIXK_BRAJA/185-216
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172 LPMS.-RQDIADYLGLTIETVSRTFTKLERHGAI
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173 >AADR_RHOPA/187-218
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174 LPMG.-RQDIADFLGLTIETVSRTFTKLEREKLI
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175 >FIXK_RHIME/159-190
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176 LPMS.-RQDIADYLGLTIETVSRVVTKLKERSLI
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177 >FIXK_AZOCA/196-227
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178 LAMS.-RQDIADFLGLTIETVSRTLTYLEEQGTI
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179 >Q9AA54/164-195
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180 VPMS.-RQDMADYLGLTIETVSRTLTSLQDEGLI
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181 >Q988V4/163-194
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182 LPMS.-RMDIGDYLGLTIETVSRVFTRLKDKGVI
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183 >Q53170/175-206
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184 LPMT.-RLDVADYLGMTIETVSRTITKLAGSGVI
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185 >Q989I4/189-220
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186 LPLT.-RADISDFLGLTNETVSRQLTRLRADGVI
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187 >Q988R0/189-220
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188 LPLT.-RADIADFLGLTIETVSRQLTRLRTDGLI
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189 >O06655/187-218
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190 LPLS.-RAEIADFLGLTIETVSRKLTKLRKSGVI
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191 >O86069/185-216
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192 LPLS.-RAEIADFLGLTIETVSRQLTRLRKEGVI
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193 >O86067/187-218
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194 LPLS.-RAEIADFLGLTIETVSRQMTRLRKWGVI
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195 >Q52775/187-218
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196 LPLS.-RAEIADFLGLTIETVSRQMTRLRKSGVI
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197 >FX24_RHILV/187-218
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198 LPLS.-RAEIADFLGLTIETVSRQMTRLRKIGVI
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199 >FNRL_RHOSH/187-218
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200 LPLT.-REEMADYLGLTLETVSRQVSALKRDGVI
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201 >Q51677/188-219
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202 LPLT.-REAMADYLGLTLETVSRQMSALKREGVI
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203 >O33961/187-218
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204 LPLT.-REAMADYLGLTLETVSRQMSALKRDGVI
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205 >O87372/155-185
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206 -SIS.-RADMADFLGLTTETVSRLLSAFHREQLI
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207 >P95599/188-221
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208 LRVSmNRQDIADHLGLTIETLAHTVTKLASRNIV
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209 >Q52823/185-216
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210 VPMS.-RQDIADHLGLTIETVSRTLTKLASRNVV
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211 >Q9FDG3/192-223
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212 VPMN.-RQDIADHLGLTIETVSRTITKLAARNIV
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213 >O84975/207-238
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214 LRMS.-REDIASYLGLRLETVCRSVARLRAQDVV
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215 >Q53240/186-217
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216 FPIT.-RQNISEMTGTTLHTVSRLLSAWEREGIV
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217 >O52578/162-191
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218 --IS.-RQDIAEMTGTTLHTVSRILSAWEQLGFV
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219 >Q9KWP8/153-184
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220 FPIT.-KQDIAEMTGTTLHTVSRILTGWEAQGFV
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221 >O66781/189-220
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222 LPLT.-RQDIAEMTGTTVETTIRVMSKWKKQGII
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223 >Q982N1/28-58
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224 -PIA.-RGEIASRVGLTVQTVSTIVRELEEQGYI
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225 >P96094/179-210
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226 LPAK.-KAMIAARLGLTPETFSRVLKRLREEHLI
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227 >FLP_LACCA/168-199
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228 VPMA.-WTQLADYLGTTPETVSRTLKRLAEEKLI
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229 >Q97IX9/173-206
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230 INMElSITYLADMLGSKRETVSRQLKLLTEKNLV
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231 >Q9CE44/171-202
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232 IPMK.-LKELANYIGTSPETISRKIKVFEENKII
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233 >Q9S392/178-209
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234 IPMK.-MKDLATFIGTTPETISRKFKILEEKGFI
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235 >Q9S393/178-209
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236 IPMT.-LKDLSAFIGTTPETISRKLRLLEEKGLV
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237 >Q98GX3/209-240
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238 LPLS.-QAELADVLGLSVVHMNRVIGALRKVGVV
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239 >Q9XDD3/182-213
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240 CPLT.-QGELADALGLTPIHINRMLRELREDNLL
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241 >NTCA_ANASP/172-203
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242 LKLS.-HQAIAEAIGSTRVTVTRLLGDLREKKMI
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243 >NTCA_SYNP7/171-202
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244 LKLS.-HQAIAEAIGSTRVTVTRLLGDLRESKLI
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245 >NTCA_SYNY3/174-205
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246 LKLS.-HQAIAEAIGSTRVTVTRLLGDLREGNMI
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247 >P94611/175-206
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248 LKLS.-HQAIAEAIGSTRVTVTRLLGDLRQEEMI
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249 >Q9L627/170-201
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250 LKLS.-HQAIAEAIGSTRVTVTRLLGDLRQDEMI
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251 >Q9AG80/172-203
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252 LKLS.-HQAIAEAIGSTRVTVTRLLGDLRQDKMI
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253 >O30778/173-204
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254 LRLS.-HQAIAEAIGSTRVTITRLLGDLRNSGLV
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255 >Q9KI45/189-220
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256 FPLT.-HAQIGSAIGSTRVTVTRLMGKLRQRGLI
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257 >CYSR_SYNP7/152-183
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258 IPLT.-HQVIAELSGSTRVTTTRLLGEFRQAGRI
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259 >CYSR_SYNY3/160-191
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260 VRLT.-HQMLANAIGTTRVTVTRLLGEFQTQGKV
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261 >Q55322/177-208
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262 LRLT.-HQEMASALSTTRVTVTRVIGLLRDEGWL
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263 >Q9RTV7/201-231
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264 -RIS.-HQDLAHSVGSTRETITKLLGDFRTRGLL
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265 >Q9TLZ6/157-188
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266 IYIS.-QHDIASILSTTRSTITRLINQLRKDNII
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267 >FNR_BACSU/174-205
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268 IVLT.-NQDLAKFCAAARESVNRMLGDLRKKGVI
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269 >O86128/173-204
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270 IVLT.-NQDLAKFCAAARESINRMLSDLRKNGVI
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271 >Q9KG81/173-204
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272 IVLT.-NQELANFCAAARESVNRMLGELRKLGVI
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273 >CRP_PASMU/165-196
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274 IKIT.-RQEIGQMVGCSRETVGRILKMLEDQHLI
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275 >Q48301/170-201
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276 IKIT.-RQEIGQMVGCSRETVGRILKMLEDQHLI
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277 >CRP_HAEIN/180-211
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278 IKIT.-RQEIGQMVGCSRETVGRIIKMLEDQNLI
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279 >Q51859/180-211
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280 IKIT.-RQEIGQMVGCSRETVGRIIKMLEDEGLI
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281 >Q9F435/166-197
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282 IKIT.-RQEIGQIVGCSRETVGHILKMLEDQNLI
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283 >CRP_ECOLI/166-197
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284 IKIT.-RQEIGQIVGCSRETVGRILKMLEDQNLI
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285 >CRP_SALTY/166-197
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286 IKIT.-RQEIGQIVGCSRETVGRILKMLEDQNLI
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287 >O07097/166-197
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288 IKIT.-RQEIGQIVGCSRETVGRILKMLEDQNLI
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289 >Q9ALY5/166-197
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290 IKIT.-RQEIGQIVGCSRETVGRILKMLEEQNLI
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291 >O34015/166-197
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292 IKIT.-RQEIGQIVGCSRETVGRILKMLEEQNLI
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293 >Q9KNW6/166-197
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294 IKIT.-RQEIGQIVGCSRETVGRILKMLEEQNLI
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295 >CLP_XANCP/186-217
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296 LRVS.-RQELARLVGCCAQMAGRVLKKLQADGLL
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297 >Q9PD39/185-216
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298 LRVS.-RQELARLVGCSREMAGRVLKKLQADGLL
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299 >Q9S6B5/186-217
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300 LRVS.-RQELARLVGCSREMAGRVLKKLQADGLL
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301 >P71977/33-62
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302 --LS.-QAEIGERVGMARSTVSRILNALEDEGLV
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303 >O28174/36-67
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304 VKIS.-SKELAEHIGQSLQTAARKLKELEDEGLI
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305 >Q9CB91/174-204
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306 -DLT.-QEEIAQLVGASRETVNKALADFAHRGWI
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307 >O69644/174-204
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308 -DLT.-QEEIAQLVGASRETVNKALADFAHRGWI
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309 >Q9XA42/174-204
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310 -DLT.-QEELAQLVGASRETVNKALADFAQRGWL
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311 >Q97TL8/136-167
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312 INCT.-HEDIGKAVGVSRVTVSRTLNKFSQYQWI
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313 >Q99YT6/175-206
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314 FQLT.-TTDIAQISGTTRETVSHVLRDLKKQELI
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315 >Q9RRX0/176-209
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316 LNLKlNQEDIARMVGATRETVSHSLSRLKKGGAI
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317 >Q9K5F3/178-209
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318 CPIT.-AAEIAKISGTSRETVSAVLKKLRCEGVI
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319 >P73234/185-215
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320 -NLP.-HRETAMLSGVTRETVTRTLGKLEKKGLI
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321 >P74171/182-212
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322 -NLP.-HRELSSISGLARETVTRCLTKLEKRGLI
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323 >Q981X4/78-109
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324 AKVT.-HDQIAAMVGSTRQWVTMMMKRFQKEGLV
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325 " >
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326 </form>-->
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327
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328
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329
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330 <!--<!--<img alt="CAP Binding Site Logo"
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331 src="examples/cap_dna.png" >
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332 <p>
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333 The two DNA recognition helixes of the CAP homodimer insert
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334 themselves into consecutive turns of the major groove. Several
|
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335 consequences can be observed in this CAP binding site logo. The logo
|
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336 is approximately palindromic, which provides two very similar
|
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337 recognition sites, one for each subunit of the dimer.
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338 However, the binding
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339 site is not perfectly symmetric, possible due to the
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340 inherent asymmetry of the operon promoter region.
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341 The displacement of the two parts is 11 base pairs, or approximately
|
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342 one full turn of the DNA helix. Additional interactions between the
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343 protein and the first and last two bases occur within the DNA minor
|
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344 groove, where it is difficult for the protein to distinguish A from T,
|
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345 or G from C.
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346 The data for this logo consists of 59 binding sites determined by
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347 <a href="#footprinting">DNA footprinting</a>.
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348 <cite>
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349 Robison, K., McGuire, A. M., Church, G. M. A comprehensive library of
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350 DNA-binding site matrices for 55 proteins applied to the
|
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351 complete <i>Escherichia coli</i> K12 genome. Journal of Molecular Biology
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352 (1998) 284, 241-254.
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353 </cite>
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354 </p>
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355
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356 <form method="post" action="create.cgi">
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357 <input type="submit" name="cmd_edit" value="Edit Logo" >
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358 <input type="hidden" name="first_index" value="-10" >
|
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359 <input type="hidden" name="show_xaxis" value="true" >
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360 <input type="hidden" name="show_yaxis" value="true" >
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361 <input type="hidden" name="show_errorbars" value="true" >
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362 <input type="hidden" name="show_fineprint" value="true" >
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363 <input type="hidden" name="scale_width" value="true" >
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364 <input type="hidden" name="logo_title" value="58 CAP Binding Sites" >
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365 <input type="hidden" name="sequences" value="
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366 >aldB -18->4
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367 attcgtgatagctgtcgtaaag
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368 >ansB 103->125
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369 ttttgttacctgcctctaactt
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370 >araB1 109->131
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371 aagtgtgacgccgtgcaaataa
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372 >araB2 147->169
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373 tgccgtgattatagacactttt
|
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374 >cdd 1 107->129
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375 atttgcgatgcgtcgcgcattt
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376 >cdd 2 57->79
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377 taatgagattcagatcacatat
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378 >crp 1 115->137
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379 taatgtgacgtcctttgcatac
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380 >crp 2
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381 gaaggcgacctgggtcatgctg
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382 >cya 151->173
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383 aggtgttaaattgatcacgttt
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384 >cytR 1 125->147
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385 cgatgcgaggcggatcgaaaaa
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386 >cytR 2 106->128
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387 aaattcaatattcatcacactt
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388 >dadAX 1 95->117
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389 agatgtgagccagctcaccata
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390 >dadAX 2 32->54
|
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391 agatgtgattagattattattc
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392 >deoP2 1 75->97
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393 aattgtgatgtgtatcgaagtg
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394 >deoP2 2 128->150
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395 ttatttgaaccagatcgcatta
|
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396 >fur 136->158
|
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397 aaatgtaagctgtgccacgttt
|
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398 >gal 56->78
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399 aagtgtgacatggaataaatta
|
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|
400 >glpACB (glpTQ) 1 54->76
|
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|
401 ttgtttgatttcgcgcatattc
|
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|
402 >glpACB (glpTQ) 2 94->116
|
|
|
403 aaacgtgatttcatgcgtcatt
|
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|
404 >glpACB (glpTQ) 144->166
|
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|
405 atgtgtgcggcaattcacattt
|
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|
406 >glpD (glpE) 95->117
|
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|
407 taatgttatacatatcactcta
|
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|
408 >glpFK 1 120->142
|
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|
409 ttttatgacgaggcacacacat
|
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410 >glpFK 2 95->117
|
|
|
411 aagttcgatatttctcgttttt
|
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|
412 >gut (srlA) 72->94
|
|
|
413 ttttgcgatcaaaataacactt
|
|
|
414 >ilvB 87->109
|
|
|
415 aaacgtgatcaacccctcaatt
|
|
|
416 >lac 1 (lacZ) 88->110
|
|
|
417 taatgtgagttagctcactcat
|
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|
418 >lac 2 (lacZ) 16->38
|
|
|
419 aattgtgagcggataacaattt
|
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|
420 >malEpKp1 110->132
|
|
|
421 ttgtgtgatctctgttacagaa
|
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422 >malEpKp2 139->161
|
|
|
423 TAAtgtggagatgcgcacaTAA
|
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|
424 >malEpKp3 173->195
|
|
|
425 TTTtgcaagcaacatcacgAAA
|
|
|
426 >malEpKp4 205->227
|
|
|
427 GACctcggtttagttcacaGAA
|
|
|
428 >malT 121->143
|
|
|
429 aattgtgacacagtgcaaattc
|
|
|
430 >melR 52->74
|
|
|
431 aaccgtgctcccactcgcagtc
|
|
|
432 >mtl 302->324
|
|
|
433 TCTTGTGATTCAGATCACAAAG
|
|
|
434 >nag 156->178
|
|
|
435 ttttgtgagttttgtcaccaaa
|
|
|
436 >nupG2 97->119
|
|
|
437 aaatgttatccacatcacaatt
|
|
|
438 >nupG1 47->69
|
|
|
439 ttatttgccacaggtaacaaaa
|
|
|
440 >ompA 166->188
|
|
|
441 atgcctgacggagttcacactt
|
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|
442 >ompR 161->183
|
|
|
443 taacgtgatcatatcaacagaa
|
|
|
444 >ptsH A 316->338
|
|
|
445 Ttttgtggcctgcttcaaactt
|
|
|
446 >ptsH B 188->210
|
|
|
447 ttttatgatttggttcaattct
|
|
|
448 >rhaS (rhaB) 161->183
|
|
|
449 aattgtgaacatcatcacgttc
|
|
|
450 >rot 1 (ppiA) 182->204
|
|
|
451 ttttgtgatctgtttaaatgtt
|
|
|
452 >rot 2 (ppiA) 129->151
|
|
|
453 agaggtgattttgatcacggaa
|
|
|
454 >tdcA 60->82
|
|
|
455 atttgtgagtggtcgcacatat
|
|
|
456 >tnaL 73->95
|
|
|
457 gattgtgattcgattcacattt
|
|
|
458 >tsx 2 146->168
|
|
|
459 gtgtgtaaacgtgaacgcaatc
|
|
|
460 >tsx 1 107->129
|
|
|
461 aactgtgaaacgaaacatattt
|
|
|
462 >uxuAB 165->187
|
|
|
463 TCTTGTGATGTGGTTAACCAAT
|
|
|
464 " >
|
|
|
465 </form>
|
|
|
466
|
|
|
467 <hr ><a name="trans"></a>
|
|
|
468 <h2><i>E. coli</i> Transcription Factor Binding Sites</h2>
|
|
|
469
|
|
|
470 <p>
|
|
|
471 The following logos (along with the <a href="#CAP">CAP logo</a> above) display
|
|
|
472 a selection of <i>E. coli</i> transcription factor binding sites determined
|
|
|
473 by DNA footprinting. This data has been collated in the
|
|
|
474 <a href="http://arep.med.harvard.edu/dpinteract/">DPInteract</a>
|
|
|
475 database and has been used to
|
|
|
476 <a href="http://arep.med.harvard.edu/ecoli_matrices/">search for
|
|
|
477 additional binding sites</a> within the <i>E. coli</i> genome.
|
|
|
478 </p>
|
|
|
479 <p>
|
|
|
480 <a name="footprinting"></a>
|
|
|
481 <cite>
|
|
|
482 Robison, K., McGuire, A. M., Church, G. M. A comprehensive library of
|
|
|
483 DNA-binding site matrices for 55 proteins applied to the
|
|
|
484 complete <i>Escherichia coli</i> K12 genome. Journal of Molecular Biology
|
|
|
485 (1998) 284, 241-254.
|
|
|
486 </cite>
|
|
|
487 </p>
|
|
|
488
|
|
|
489 <a name="LexA"></a>
|
|
|
490 <img alt ="" src="examples/lexA.png" ><br >
|
|
|
491 <form method="post" action="create.cgi">
|
|
|
492 <input type="submit" name="cmd_edit" value="Edit Logo" >
|
|
|
493 LexA repressor is closely related to CAP, and has similar DNA protein
|
|
|
494 interactions.
|
|
|
495 <input type="hidden" name="logo_title" value="19 LexA Binding Sites" >
|
|
|
496 <input type="hidden" name="first_index" value="-9" >
|
|
|
497 <input type="hidden" name="show_xaxis" value="true" >
|
|
|
498 <input type="hidden" name="show_yaxis" value="true" >
|
|
|
499 <input type="hidden" name="show_errorbars" value="true" >
|
|
|
500 <input type="hidden" name="show_fineprint" value="true" >
|
|
|
501 <input type="hidden" name="scale_width" value="true" >
|
|
|
502 <input type="hidden" name="sequences" value="
|
|
|
503 >dinD 32->52
|
|
|
504 aactgtatataaatacagtt
|
|
|
505 >dinG 15->35
|
|
|
506 tattggctgtttatacagta
|
|
|
507 >dinH 77->97
|
|
|
508 tcctgttaatccatacagca
|
|
|
509 >dinI 19->39
|
|
|
510 acctgtataaataaccagta
|
|
|
511 >lexA-1 28->48
|
|
|
512 tgctgtatatactcacagca
|
|
|
513 >lexA-2 7->27
|
|
|
514 aactgtatatacacccaggg
|
|
|
515 >polB(dinA) 53->73
|
|
|
516 gactgtataaaaccacagcc
|
|
|
517 >recA 59->79
|
|
|
518 tactgtatgagcatacagta
|
|
|
519 >recN-1 49->69
|
|
|
520 tactgtatataaaaccagtt
|
|
|
521 >recN-2 27->47
|
|
|
522 tactgtacacaataacagta
|
|
|
523 >recN-3 9-29
|
|
|
524 TCCTGTATGAAAAACCATTA
|
|
|
525 >ruvAB 49->69
|
|
|
526 cgctggatatctatccagca
|
|
|
527 >sosC 18->38
|
|
|
528 tactgatgatatatacaggt
|
|
|
529 >sosD 14->34
|
|
|
530 cactggatagataaccagca
|
|
|
531 >sulA 22->42
|
|
|
532 tactgtacatccatacagta
|
|
|
533 >umuDC 20->40
|
|
|
534 tactgtatataaaaacagta
|
|
|
535 >uvrA 83->103
|
|
|
536 tactgtatattcattcaggt
|
|
|
537 >uvrB 75->95
|
|
|
538 aactgtttttttatccagta
|
|
|
539 >uvrD 57->77
|
|
|
540 atctgtatatatacccagct" >
|
|
|
541 </form>
|
|
|
542
|
|
|
543 <a name="hns"></a>
|
|
|
544 <!--<img alt ="" src="examples/hns.png" >-->
|
|
|
545 <!--<form method="post" action="create.cgi">
|
|
|
546 <input type="submit" name="cmd_edit" value="Edit Logo" >
|
|
|
547 H-NS: Histone like, nucleoid-associated DNA-binding protein.
|
|
|
548 <input type="hidden" name="logo_title" value="15 hns Binding Sites" >
|
|
|
549 <input type="hidden" name="first_index" value="-1" >
|
|
|
550 <input type="hidden" name="logo_start" value="1" >
|
|
|
551 <input type="hidden" name="show_xaxis" value="true" >
|
|
|
552 <input type="hidden" name="show_yaxis" value="true" >
|
|
|
553 <input type="hidden" name="show_errorbars" value="true" >
|
|
|
554 <input type="hidden" name="show_fineprint" value="true" >
|
|
|
555 <input type="hidden" name="scale_width" value="true" >
|
|
|
556 <input type="hidden" name="sequences" value="
|
|
|
557 >hns1
|
|
|
558 tAGGCTGATTT
|
|
|
559 >hns2
|
|
|
560 gAAAATTATTT
|
|
|
561 >hns3
|
|
|
562 gGGAGTTATTC
|
|
|
563 >hns4
|
|
|
564 aCAAATTATTT
|
|
|
565 >hns5
|
|
|
566 gCAACAGAGTA
|
|
|
567 >hns6
|
|
|
568 aCGCCTGAATA
|
|
|
569 >hns7
|
|
|
570 tCGAGAAAGTT
|
|
|
571 >hns8
|
|
|
572 tCGCCGGAATT
|
|
|
573 >hns9
|
|
|
574 tGGCATGAATA
|
|
|
575 >hns10
|
|
|
576 aTAAAGGAATC
|
|
|
577 >hns11
|
|
|
578 cTAATTTAATT
|
|
|
579 >hns12
|
|
|
580 gCAATTAAATT
|
|
|
581 >hns13
|
|
|
582 tGACATGAATC
|
|
|
583 >hns14
|
|
|
584 cTGGCTAATTT
|
|
|
585 >hns15
|
|
|
586 aCAACTGAATT" >
|
|
|
587 </form>
|
|
|
588
|
|
|
589
|
|
|
590 <a name="dnaA"></a>-->
|
|
|
591 <!--<img alt="" src="examples/dnaA.png" >-->
|
|
|
592 <!--<form method="post" action="create.cgi">
|
|
|
593 <input type="submit" name="cmd_edit" value="Edit Logo" >
|
|
|
594 DNA biosynthesis initiation binding protein.
|
|
|
595 <input type="hidden" name="logo_title" value="8 dnaA Binding Sites" >
|
|
|
596 <input type="hidden" name="logo_end" value="14" >
|
|
|
597 <input type="hidden" name="show_xaxis" value="true" >
|
|
|
598 <input type="hidden" name="show_yaxis" value="true" >
|
|
|
599 <input type="hidden" name="show_errorbars" value="true" >
|
|
|
600 <input type="hidden" name="show_fineprint" value="true" >
|
|
|
601 <input type="hidden" name="scale_width" value="true" >
|
|
|
602 <input type="hidden" name="sequences" value="
|
|
|
603 >dnaA_1 rpoH-1
|
|
|
604 aatttattcacaagc
|
|
|
605 >dnaA_2 rpoH-2
|
|
|
606 attttatccacaagt
|
|
|
607 >dnaA_3 nrd
|
|
|
608 gagttatccacaaag
|
|
|
609 >dnaA_4 oriC-R1
|
|
|
610 ttgttatccacaggg
|
|
|
611 >dnaA_5 oriC-R2
|
|
|
612 ggggttatacacaac
|
|
|
613 >dnaA_6 oriC-R3
|
|
|
614 ttctttggataacta
|
|
|
615 >dnaA_7 oriC-R4
|
|
|
616 gagttatccacagta
|
|
|
617 >dnaA_10 dnaA
|
|
|
618 gatttatccacagga" >
|
|
|
619 </form>
|
|
|
620 -->
|
|
|
621
|
|
|
622 <!-- <a name="argR"></a> -->
|
|
|
623 <!--<img alt ="" src="examples/argR.png" >-->
|
|
|
624 <!--<form method="post" action="create.cgi">
|
|
|
625 <input type="submit" name="cmd_edit" value="Edit Logo" >
|
|
|
626 Arginine Repressor.
|
|
|
627 <input type="hidden" name="logo_title" value="17 ArgR Binding Sites" >
|
|
|
628 <input type="hidden" name="first_index" value="-8" >
|
|
|
629 <input type="hidden" name="show_xaxis" value="true" >
|
|
|
630 <input type="hidden" name="show_yaxis" value="true" >
|
|
|
631 <input type="hidden" name="show_errorbars" value="true" >
|
|
|
632 <input type="hidden" name="show_fineprint" value="true" >
|
|
|
633 <input type="hidden" name="scale_width" value="true" >
|
|
|
634 <input type="hidden" name="sequences" value="
|
|
|
635 >argA-1 32->50
|
|
|
636 acagaataaaaatacact
|
|
|
637 >argA-2 11->29
|
|
|
638 ttcgaataatcatgcaaa
|
|
|
639 >argD-1 51->69
|
|
|
640 agtgattttttatgcata
|
|
|
641 >argD-2 30->48
|
|
|
642 tgtggttataatttcaca
|
|
|
643 >argECBH-1 26->44, argC 110->128
|
|
|
644 tatcaatattcatgcagt
|
|
|
645 >argECBH-2 47->65, argC 89->107
|
|
|
646 tatgaataaaaatacact
|
|
|
647 >argF-1 48->66
|
|
|
648 aatgaataattacacata
|
|
|
649 >argF-2 27->45
|
|
|
650 agtgaattttaattcaat
|
|
|
651 >argG-1 73->91
|
|
|
652 attaaatgaaaactcatt
|
|
|
653 >argG-2 52->70
|
|
|
654 tttgcataaaaattcagt
|
|
|
655 >argG-3 192->210
|
|
|
656 tgtgaatgaatatccagt
|
|
|
657 >argI-1 46->64
|
|
|
658 aatgaataatcatccata
|
|
|
659 >argI-2 25->43
|
|
|
660 attgaattttaattcatt
|
|
|
661 >argR-1 45->63
|
|
|
662 tttgcataaaaattcatc
|
|
|
663 >argR-2 24->42
|
|
|
664 tatgcacaataatgttgt
|
|
|
665 >carAB-1 32->50
|
|
|
666 tgtgaattaatatgcaaa
|
|
|
667 >carAB-2 11->29
|
|
|
668 agtgagtgaatattctct" >
|
|
|
669 </form>
|
|
|
670
|
|
|
671
|
|
|
672
|
|
|
673 <hr >
|
|
|
674 <a name="promoters"></a>
|
|
|
675 <h2><i>E. coli</i> Promoters (Transcription Start Signals)</h2>
|
|
|
676
|
|
|
677 <p>
|
|
|
678 <img alt="" src="examples/ecoli10.png"><br >
|
|
|
679 In prokaryotes the DNA sequence just upstream of the transcription start point
|
|
|
680 contains two important conserved regions. The first such region is centered
|
|
|
681 at around 35bp upstream and is involved in the initial recognition of the
|
|
|
682 gene by RNA polymerase. -->
|
|
|
683 <!--The consensus sequence is TTGACAT, but the logo
|
|
|
684 indicates that a great deal of variation occurs. -->
|
|
|
685 <!--The second region, sometimes
|
|
|
686 referred to as the Pribnow box, is centered at about 10bp upstream. The typical
|
|
|
687 separation between the -35 and -10 sites is 15-18 bp.
|
|
|
688 See
|
|
|
689 <a class="out" href="http://www.lecb.ncifcrf.gov/~toms/papers/baseflip/">baseflip:
|
|
|
690 Strong Minor Groove Base Conservation in Sequence Logos
|
|
|
691 implies DNA Distortion or Base Flipping during Replication and
|
|
|
692 Transcription Initiation</a> for more information. This sequence data was kindly provided by Prof. Julia Brettschneider <juliab@stat.berkeley.edu>
|
|
|
693 </p>-->
|
|
|
694
|
|
|
695 <!--
|
|
|
696 <form method="post" action="create.cgi">
|
|
|
697 <input type="submit" name="cmd_edit" value="Edit Logo" >
|
|
|
698 The -10 region of 350 E. coli promoters
|
|
|
699 <input type="hidden" name="logo_title" value="-10 region of 3E. coli promoters" >
|
|
|
700 <input type="hidden" name="first_index" value="-21" >
|
|
|
701 <input type="hidden" name="logo_start" value="0" >
|
|
|
702 <input type="hidden" name="logo_end" value="7" >
|
|
|
703 <input type="hidden" name="show_xaxis" value="true" >
|
|
|
704 <input type="hidden" name="show_yaxis" value="true" >
|
|
|
705 <input type="hidden" name="show_errorbars" value="true" >
|
|
|
706 <input type="hidden" name="show_fineprint" value="true" >
|
|
|
707 <input type="hidden" name="scale_width" value="true" >
|
|
|
708 <input type="hidden" name="sequences" value="> The -10 hexamers of 350 E.coli promoters
|
|
|
709 gatgacgtggtttacgaccccaTTTAGTagtcaaccgcagtgagtgagtc
|
|
|
710 >
|
|
|
711 ttgaaaccagacgtttcgccccTATTACagactcacaaccacatgatgac
|
|
|
712 >
|
|
|
713 ctggcggcgtagcgatgcgctgGTTACTctgaaaacggtctatgcaaatt
|
|
|
714 >
|
|
|
715 tgacttttagcgcccatatctcCAGAATgccgccgtttgccagaaattcg
|
|
|
716 >
|
|
|
717 gatttacgtcatcattgtgaatTAATATgcaaataaagtgagtgaatatt
|
|
|
718 >
|
|
|
719 agaatacagcttattgaataccCATTATgagttagccattaacgcgtcca
|
|
|
720 >
|
|
|
721 cgacgacggtttacgctttacgTATAGTggcgacaattttttttatcggg
|
|
|
722 >
|
|
|
723 ctgacgctttttatcgcaactcTCTACTgtttctccatacccgttttttt
|
|
|
724 >
|
|
|
725 atccgtttttgtatccagtaacTCTAAAagcatatcgcattcatctggag
|
|
|
726 >
|
|
|
727 ttttttattgaatgtagaatttTATTCTgaatgtgtgggctctctatttt
|
|
|
728 >
|
|
|
729 tattctgaatgtgtgggctctcTATTTTaggattaattaaaaaaatagag
|
|
|
730 >
|
|
|
731 tcttttcacctttcctcctgttTATTCTtattaccccgtgtttatgtctc
|
|
|
732 >
|
|
|
733 attgcttaagcaagatcggacgGTTAATgtgttttacacattttttccgt
|
|
|
734 >
|
|
|
735 gcgccacactaaggtaattcctTATGCTggcaatgtcgtgaccagtgata
|
|
|
736 >
|
|
|
737 tgcagcctgtgctcagcgcgtgTTTCATacgcaagtgcgtatcggcgcgc
|
|
|
738 >
|
|
|
739 tgcattcgctgccgcataccatTATTCTtgatctgacggaagtctttttg
|
|
|
740 >
|
|
|
741 ggacataaggtgaatactttgtTACTTTagcgtcacagacatgaaattgg
|
|
|
742 >
|
|
|
743 ttattgagctttccggcgagagTTCAATgggacaggttccagaaaactca
|
|
|
744 >
|
|
|
745 ttaaaaattgttaacaattttgTAAAATaccgacggatagaacgacccgg
|
|
|
746 >
|
|
|
747 taacacctcgtcaaaatcctgcTATTCTgcccgttgcggtactgggcatt
|
|
|
748 >
|
|
|
749 tctattttatattattccctgtTTTAATtaactctatcagggatggttta
|
|
|
750 >
|
|
|
751 gacagaggccctcaatccaaacGATAAAgggtgatgtgtttactgatatg
|
|
|
752 >
|
|
|
753 tgctatctcgctgacggacaggCAAATTgatgaccagcttttaaaccgac
|
|
|
754 >
|
|
|
755 tttgacatttcttttgcactggTAAACTaaatcacttttttttgtcccag
|
|
|
756 >
|
|
|
757 ttttctcgcgtccgcgatagcgTAAAATagcgccgtaacccccaggtcct
|
|
|
758 >
|
|
|
759 aatttctacctgtttaagcatcTCTGGTagacttcctgtaattgaatcga
|
|
|
760 >
|
|
|
761 tgcagtgctcatagcggtcattTATGTCagacttgtcgttttacagttcg
|
|
|
762 >
|
|
|
763 aacatatctcgcaagcctgtctTGTGTTgacaacattttctgctaaccct
|
|
|
764 >
|
|
|
765 ctctccctgacgcgggataaagTGGTATtctcaaacatatctcgcaagcc
|
|
|
766 >
|
|
|
767 tatatctttaacaatctcaggtTAAAAActttcctgttttcaacgggact
|
|
|
768 >
|
|
|
769 gttgcaaatgaataattacacaTATAAAgtgaattttaattcaataagtg
|
|
|
770 >
|
|
|
771 tgaacgtccaatcaataaccgcTTTAATagataaacaccgctgatgaatg
|
|
|
772 >
|
|
|
773 ttgctttttatcttcagatgaaTAGAATgcggcggattttttgggtttca
|
|
|
774 >
|
|
|
775 gtcataaggtaaaagtctcattTATGATgagttccattggatttacttat
|
|
|
776 >
|
|
|
777 ttaccttatgacaatcggcgagTAGTCTgcctctcattccagagacagac
|
|
|
778 >
|
|
|
779 tacactttatgcttccggctcgTATGTTgtgtggaattgtgagcggataa
|
|
|
780 >
|
|
|
781 cgcaaaacctttcgcggtatggCATGATagcgcccggaagagagtcaatt
|
|
|
782 >
|
|
|
783 taaagttgtcacggccgagactTATAGTcgctttgtttttattttttaat
|
|
|
784 >
|
|
|
785 ttcattcttgaatatttattggTATAGTaaggggtgtattgagattttca
|
|
|
786 >
|
|
|
787 atctcttggccttgctggtcgtTATCCTgcaagctatcactttattggct
|
|
|
788 >
|
|
|
789 taaatctgtcataaatctgacgCATAATgacgtcgcattaatgatcgcaa
|
|
|
790 >
|
|
|
791 tgcagggagagcgccccggcacTAGACTacccgcctcttattttagtctg
|
|
|
792 >
|
|
|
793 acatatttttgtgagcaatgatTTTTATaataggctcctctgtatacgaa
|
|
|
794 >
|
|
|
795 ttacagtaatgtaaccttcccgTAAAATgcccacacactttaaacgccac
|
|
|
796 >
|
|
|
797 tagcgtaacaacaaaagattgtTATGCTtgaaatatggtgatgccgtacc
|
|
|
798 >
|
|
|
799 tcccttgtccccatctctcccaCATCCTgtttttaaccttaaaatggcat
|
|
|
800 >
|
|
|
801 tgaggcaatcgcctgttggtggTATCGTttatcgctttttcaaaaaattc
|
|
|
802 >
|
|
|
803 gattgcagaaatatattgataaTATTATtgataactatttgcatttgcaa
|
|
|
804 >
|
|
|
805 aaatgcaaatagttatcaataaTATTATcaatatatttctgcaatcaatg
|
|
|
806 >
|
|
|
807 tgctggaaaattaatgtgctttTATAGTggcgcttattgttgtcaatatt
|
|
|
808 >
|
|
|
809 attatcactcccttttactggcTAAACCagaaaacttattttatcattca
|
|
|
810 >
|
|
|
811 tcacacactctgtagcagatgaTCTAACaatctgattacagaacatcggc
|
|
|
812 >
|
|
|
813 tgtcagcctgtcccgcttataaGATCATacgccgttatacgttgtttacg
|
|
|
814 >
|
|
|
815 tttcatttaggcgtggcaattcTATAATgatacgcattatctcaagagca
|
|
|
816 >
|
|
|
817 acagttattagtggtagacaagTTTAATaattcggattgctaagtacttg
|
|
|
818 >
|
|
|
819 acaaacattaccaggaaaagcaTATAATgcgtaaaagttatgaagtcggt
|
|
|
820 >
|
|
|
821 tgtaatgattttgtgaacagccTATACTgccgccaggtctccggaacacc
|
|
|
822 >
|
|
|
823 tgggcagcttcttcgtcaaattTATCATgtggggcatccttaccgctctg
|
|
|
824 >
|
|
|
825 ctttaaaaactgcccctgacacTAAGACagtttttaaaggttccttcgcg
|
|
|
826 >
|
|
|
827 ggaaatgggcatcaaaaagagaTAAATTgttctcgatcaaattggctgaa
|
|
|
828 >
|
|
|
829 ttacacattctgacggaagataTAGATTggaagtattgcattcactaaga
|
|
|
830 >
|
|
|
831 gtcacacttttcgcatctttgtTATGCTatggttatttcataccataagc
|
|
|
832 >
|
|
|
833 gtcacacttttcgcatctttgtTATGCTatggttatttcataccataagc
|
|
|
834 >
|
|
|
835 gttttttgttgttaattcggtgTAGACTtgtaaacctaaatcttttcaat
|
|
|
836 >
|
|
|
837 tgtaaaccaaattgaaaagattTAGGTTtacaagtctacaccgaattaac
|
|
|
838 >
|
|
|
839 caaaactggcacgattttttcaTATATGtgaatgtcacgcaggggatcgt
|
|
|
840 >
|
|
|
841 tttttcatcaggttttacgctaAATAATcactgtgttgagtgcacaattt
|
|
|
842 >
|
|
|
843 ttgacggctcgccctaattctcTAAATTgtatttctagagttggcgaggt
|
|
|
844 >
|
|
|
845 cgtgttacaaaaattcttttctTATGATgtagaacgtgcaacgcaattga
|
|
|
846 >
|
|
|
847 caaaaattcttttcttatgatgTAGAACgtgcaacgcaattgatgctcgc
|
|
|
848 >
|
|
|
849 gatggtgaacaagtacgcgaggGAGAATgagcatccattgctgtgtacgc
|
|
|
850 >
|
|
|
851 actcctcacttacacgtaatacTACTTTcgagtgaaaatctacctatctc
|
|
|
852 >
|
|
|
853 ggtggtggtttgttggttgggtTGACATactgggtcatttacctgcgtga
|
|
|
854 >
|
|
|
855 tatggtgctgccggtcgcgatgTTTGTTgccagcggttttgagcacagta
|
|
|
856 >
|
|
|
857 gcaaacctgatggtatgtctggCAGTATggatgagttattctggccgcag
|
|
|
858 >
|
|
|
859 tttctcatctataatgctttgtTAGTATctcgtcgccgacttaataaaga
|
|
|
860 >
|
|
|
861 tttctcatctataatgctttgtTAGTATctcgtcgccgacttaataaaga
|
|
|
862 >
|
|
|
863 tgataaaaccgatagccacaggAATAATgtattacctgtggtcgcaatcg
|
|
|
864 >
|
|
|
865 gagcaagtgattgaaaaagcgcTACAATacgcgcgccagaaattggctct
|
|
|
866 >
|
|
|
867 tggaattttgtaaatctcccgtTACCCTgatagcggacttcccttctgta
|
|
|
868 >
|
|
|
869 ttcaataaattgcgaaacaaggTATACTccagcagttcctgaagatgttt
|
|
|
870 >
|
|
|
871 acgcagcagtagcaaactaagcTATAAAttgcagcgcgaactggagcagc
|
|
|
872 >
|
|
|
873 tgttcagcgtacacgtgttagcTATCCTgcgtgcttcaataaaataaggc
|
|
|
874 >
|
|
|
875 ttgtaagttttcaactacgttgTAGACTttacatcgccaggggtgctcgg
|
|
|
876 >
|
|
|
877 ttcacacttgtaagttttcaacTACGTTgtagactttacatcgccagggg
|
|
|
878 >
|
|
|
879 gttgatctttgttgtcactggaTGTACTgtacatccatacagtaactcac
|
|
|
880 >
|
|
|
881 attagcatcgcatcaggcaatcAATAATgtcagatatgaaaagcggaaac
|
|
|
882 >
|
|
|
883 tggcatatgaaattttgaggatTACCCTacacttataggagttaccttac
|
|
|
884 >
|
|
|
885 acatggttgcacaaagttgcaaCATCATggatatttcacgataacgttaa
|
|
|
886 >
|
|
|
887 aaaatttaatgtaaatggtgtgTTAAATcgattgtgaataaccagcgctt
|
|
|
888 >
|
|
|
889 aaaatttaatgtaaatggtgtgTTAAATcgattgtgaataaccagcgctt
|
|
|
890 >
|
|
|
891 tgtgaataaccagcgcttccggCAGGATacggtcgccctggtaaaacata
|
|
|
892 >
|
|
|
893 aacggcaagtttcgacattgccGATAATaattttttggagactttagatg
|
|
|
894 >
|
|
|
895 catcactctgtcatctttccagTAGAAActaatgtcactgaaatggtgtt
|
|
|
896 >
|
|
|
897 gtcggaatggctggttatccatTAAAATagatcggatcgatataagcaca
|
|
|
898 >
|
|
|
899 tgcaaaggaaaacgtttccgctTATCCTttgtgtccggcaaaaacatccc
|
|
|
900 >
|
|
|
901 tgactctatgacgttacaaagtTAATATgcgcgccctatgcaaaaggtaa
|
|
|
902 >
|
|
|
903 tttcagagattatgaattgccgCATTATagcctaataacgcgcatctttc
|
|
|
904 >
|
|
|
905 ttcatgacggcaaacaatagggTAGTATtgacaagccaattacaaatcat
|
|
|
906 >
|
|
|
907 tgatctgctggcaagaacagacTACTGTatataaaaacagtataacttca
|
|
|
908 >
|
|
|
909 tgaataatattttcaactgagtTATCAAgatgtgattagattattattct
|
|
|
910 >
|
|
|
911 gatcatgcagctagtgcgatccTGAACTaaggttttctgatacttgaata
|
|
|
912 >
|
|
|
913 gatgcggtgctttcctggctgtTAGAATacgccccgtcgcgcctgactgg
|
|
|
914 >
|
|
|
915 agcgttaccgtccgctatcgtcTATGTTcaagttgtcttaattgccagaa
|
|
|
916 >
|
|
|
917 tttattgatcttacgcatcctgTATGATgcaagcagactaaccctatcaa
|
|
|
918 >
|
|
|
919 catcaaattgcctttagctacaGACACTaaggtggcagacatcgaaacga
|
|
|
920 >
|
|
|
921 gtttcagagcgttaccttgcccTTAAACattagcaatgtcgatttatcag
|
|
|
922 >
|
|
|
923 tgcacaactgaatttaaggctcTATTATtacctcaacaaaccaccccaat
|
|
|
924 >
|
|
|
925 taatgtagccaccaaatcatacTACAATttattaactgttagctataatg
|
|
|
926 >
|
|
|
927 tgctgaagaataattgaaatgaTATTATtaattccactgcctttggtaga
|
|
|
928 >
|
|
|
929 gaatatgattgctatttgcattTAAAATcgagacctggtttttctactga
|
|
|
930 >
|
|
|
931 cgtgacattttaacacgtttgtTACAAGgtaaaggcgacgccgcccatga
|
|
|
932 >
|
|
|
933 tgacaattaatcatcgaactagTTAACTagtacgcaagttcacgtaaaaa
|
|
|
934 >
|
|
|
935 ttgcgtatcggattttatcaggTACAGTgtgacgctttcgtcaatctggc
|
|
|
936 >
|
|
|
937 gacgctttcgtcaatctggcaaTAGATTtgcttgacattcgaccaaaatt
|
|
|
938 >
|
|
|
939 acattcgaccaaaattccgtcgTGCTATagcgcctgtaggccaagacctg
|
|
|
940 >
|
|
|
941 ggtgaaccccttctcgttatggCAAAATaagccaatacagaaccagcatt
|
|
|
942 >
|
|
|
943 gacagatttgtgccattccgtgAACGATcgacgcgtcgtgattaggtgaa
|
|
|
944 >
|
|
|
945 tttcaccagacttattcttagcTATTATagttatagagagcttacttccg
|
|
|
946 >
|
|
|
947 tcctgctatccaaatagtgtcaTATCATcatattaattgttcttttttca
|
|
|
948 >
|
|
|
949 gctgtgttattgacagttagcaTAAACTaggtgtgacgttaactatatgt
|
|
|
950 >
|
|
|
951 cgattccgtctctctgatgattGATGTTaattaacaatgtattcaccgaa
|
|
|
952 >
|
|
|
953 tgtccttgttcgataaacacaaTAAACTtgatcatgaaattgccagaaag
|
|
|
954 >
|
|
|
955 tatcctcgtgctgtttctcacgTAGTCTataatttcctttttaagcccac
|
|
|
956 >
|
|
|
957 tttgttaaaaaagtgtgtaggaTATTGTtactcgcttttaacagggcaac
|
|
|
958 >
|
|
|
959 ttacttcccgtaggattcttgcTTTAATagtgggattaatttccacatta
|
|
|
960 >
|
|
|
961 attacgcaacgataatagcgggTATAAGataaataaaaggtaaaacgttt
|
|
|
962 >
|
|
|
963 tttgtctcaccttttaatttgcTACCCTatccatacgcacaataaggcta
|
|
|
964 >
|
|
|
965 tccccttttcgtcaagatcggcCAAAATtccacgcttacactatttgcgt
|
|
|
966 >
|
|
|
967 attctcaacataaaaaactttgTGTAATacttgtaacgctacatggagat
|
|
|
968 >
|
|
|
969 ttcatccggttaaatatgcaaaGATAAAtgcgcagaaatgtgtttctcaa
|
|
|
970 >
|
|
|
971 gtgcattagcttatttttttgtTATCATgctaaccacccggcgaggtgtg
|
|
|
972 >
|
|
|
973 tgacttttatcgccgtagccttTTCAATaaaggtcttttgaagagtacca
|
|
|
974 >
|
|
|
975 ttaacgtttttaactttttaatTAGAATatagatacaggagagcacatat
|
|
|
976 >
|
|
|
977 taacggatgtatccgtttagtcTATGATatgtacagcacttttggcttcg
|
|
|
978 >
|
|
|
979 tcactttccgctgattcggtgcCAGACTgaaatcagcctataggaggaaa
|
|
|
980 >
|
|
|
981 gggcttgaaaaagcgcccaatgTATTCCaggcttatctaacacgctgata
|
|
|
982 >
|
|
|
983 cttaccgtcacattcttgatggTATAGTcgaaaactgcaaaagcacatga
|
|
|
984 >
|
|
|
985 accaactggcaaaattttgtccTAAACTtgatctcgacgaaatggctgca
|
|
|
986 >
|
|
|
987 catttttatcgtaattgcccttTAAAATtcggggcgccgaccccatgtgg
|
|
|
988 >
|
|
|
989 aaaattcggggcgccgaccccaTGTGGTctcaagcccaaaggaagagtga
|
|
|
990 >
|
|
|
991 ttgacgctgcgtaaggtttttgTAATTTtacaggcaaccttttattcact
|
|
|
992 >
|
|
|
993 ataaaataattttttcgatatcTAAAATaaatcgcgaaacgcaggggttt
|
|
|
994 >
|
|
|
995 ttgaaaatagtcgcgtaacccaTACGATgtgggtatcgcatattgcgttt
|
|
|
996 >
|
|
|
997 tttcgcaagctcgtaaaagcagTACAGTgcaccgtaagaaaattacaagt
|
|
|
998 >
|
|
|
999 tcttcatccttcgctggatatcTATCCAgcatttttttatcatacagcat
|
|
|
1000 >
|
|
|
1001 gacgagtacagttgcgtcgattTAGGAAaaatcttagataagtgtaaaga
|
|
|
1002 >
|
|
|
1003 cttcatgaccgtgaatagagtcCATCGTccctcctcaaaaaaagcctagc
|
|
|
1004 >
|
|
|
1005 tgacgaagcagccgttatgcctTAACCTgcgccgcagatatcactcataa
|
|
|
1006 >
|
|
|
1007 tgaaacattgatgtctctgtagCAACATaggggtaatcttactgacaaca
|
|
|
1008 >
|
|
|
1009 tgtctgaacgtgaattgcagatTATGCTgatgatcaccaagggccagaag
|
|
|
1010 >
|
|
|
1011 tcaaagttgcaataaaaaccgcTAATATacgaatgactaactatcagtag
|
|
|
1012 >
|
|
|
1013 gattaaaaaccctgcagaaacgGATAATcatgccgataactcatataacg
|
|
|
1014 >
|
|
|
1015 ctttgttgcgctcaagacgcagGATAATtagccgataagcagtagcgaca
|
|
|
1016 >
|
|
|
1017 tactttaagacaattccaggcaAATTATacaacactttacgggatagtaa
|
|
|
1018 >
|
|
|
1019 tttgtttcacatttctgtgacaTACTATcggatgtgcggtaattgtatgg
|
|
|
1020 >
|
|
|
1021 ttcacatttctgtgacatactaTCGGATgtgcggtaattgtatggaacag
|
|
|
1022 >
|
|
|
1023 ttcacatttctgtgacatactaTCGGATgtgcggtaattgtatggaacag
|
|
|
1024 >
|
|
|
1025 tgtgacatactatcggatgtgcGGTAATtgtatggaacaggagacacaca
|
|
|
1026 >
|
|
|
1027 tgtgacatactatcggatgtgcGGTAATtgtatggaacaggagacacaca
|
|
|
1028 >
|
|
|
1029 gctgattagcacggtgatatttGATACTctggcagacagcagaaataacg
|
|
|
1030 >
|
|
|
1031 taataaatagttaattaacgctCATCATtgtacaatgaactgtacaaaag
|
|
|
1032 >
|
|
|
1033 ttaaatctttgtgggatcagggCATTATcttacgtgatcagaataaacaa
|
|
|
1034 >
|
|
|
1035 ttatactttaataagtactttgTATACTtatttgcgaacattccaggccg
|
|
|
1036 >
|
|
|
1037 atataaagccacaacgggttcgTAAACTgttatcccattacatgattatg
|
|
|
1038 >
|
|
|
1039 gaagtcctgtattcagtgctgaCAAAATagccgccagcaagcagtcattt
|
|
|
1040 >
|
|
|
1041 tgataattgttatcgtttgcatTATCGTtacgccgcaatcaaaaaaggct
|
|
|
1042 >
|
|
|
1043 taacatttggattgataattgtTATCGTttgcattatcgttacgccgcaa
|
|
|
1044 >
|
|
|
1045 tggattattctgcatttttgggGAGAATggacttgccgactgattaatga
|
|
|
1046 >
|
|
|
1047 acctcaaactgcgcggctgtgtTATAATttgcgacctttgaatccgggat
|
|
|
1048 >
|
|
|
1049 tgcaagagggtcattttcacacTATCTTgcagtgaatcccaaacataccc
|
|
|
1050 >
|
|
|
1051 atttaatttatgaatgttttctTAACATcgcggcaactcaagaaacggca
|
|
|
1052 >
|
|
|
1053 aaatcacgtttcactttcgaatTATGAGcgaatatgcgcgaaatcaaaca
|
|
|
1054 >
|
|
|
1055 attagctgtataaaagaatttcTACAGTgattgtaaggttttttttattc
|
|
|
1056 >
|
|
|
1057 ccaaagtttcgggctgttatgtTTTAATgtgcaacattcatggtctgttg
|
|
|
1058 >
|
|
|
1059 acgagagttaaccggacaagtgTGCCATaatctcgcggccaggcatactt
|
|
|
1060 >
|
|
|
1061 tgttcggcgtacaagtgtacgcTATTGTgcattcgaaacttactctatgt
|
|
|
1062 >
|
|
|
1063 caacattccagctggtccgaccTATACTctcgccactggtctgatttcta
|
|
|
1064 >
|
|
|
1065 ggcgctacgctcaatgaaacatTTAAATactatacgacagcgacatttat
|
|
|
1066 >
|
|
|
1067 ttgaggaatcaggcgggagtgaTAGAATatcgcccacttaatttttccag
|
|
|
1068 >
|
|
|
1069 tgtcaacgaaaacaataatgcgTAAGGTagaaacccgaactacattgagg
|
|
|
1070 >
|
|
|
1071 tgcgcaatttgtcaacgaaaacAATAATgcgtaaggtagaaacccgaact
|
|
|
1072 >
|
|
|
1073 ttccgcatattctctgagcgggTATGCTacctgttgtatcccaatttcat
|
|
|
1074 >
|
|
|
1075 attcagcctgtcggaactggtaTTTAACcagactaattattttgatgcgc
|
|
|
1076 >
|
|
|
1077 attcagcctgtcggaactggtaTTTAACcagactaattattttgatgcgc
|
|
|
1078 >
|
|
|
1079 ggttcaattcttcctttagcggCATAATgtttaatgacgtacgaaacgtc
|
|
|
1080 >
|
|
|
1081 ttcttcctttagcggcataatgTTTAATgacgtacgaaacgtcagcggtc
|
|
|
1082 >
|
|
|
1083 tggcagttgaccgtggtaatgaTATGATttcacacctttaccagccaatg
|
|
|
1084 >
|
|
|
1085 gcttttaatgccataccaaacgTACCATtgagacacttgtttgcacagag
|
|
|
1086 >
|
|
|
1087 attgttgtatgcatgtttttttTATGCTttccttaagaacaactcacccc
|
|
|
1088 >
|
|
|
1089 cagaactcaatgcacaaggcagTATTAAcgtcgtcaattattcccaacat
|
|
|
1090 >
|
|
|
1091 ttgccgccttgaagaaaggaggTATAATccgtcgattttttttgtggctg
|
|
|
1092 >
|
|
|
1093 cgcaaacgtttgctttccctgtTAGAATtgcgccgaattttatttttcta
|
|
|
1094 >
|
|
|
1095 ccggaagctggttgcgtgaaatTAGAAAtttcgccgctgatccaaacctg
|
|
|
1096 >
|
|
|
1097 gggaagcgcctcgcttcccgtgTATGATtgaacccgcatggctcccgaaa
|
|
|
1098 >
|
|
|
1099 ttcccttcgccatttccttgagCAAACTttagctattcttatcaattatg
|
|
|
1100 >
|
|
|
1101 tgttatcgcacaatgattcggtTATACTgttcgccgttgtccaacaggac
|
|
|
1102 >
|
|
|
1103 ggaatgaattggcgttatgtgtTACGTTtagcagatcaaaagacaggcga
|
|
|
1104 >
|
|
|
1105 ggggcgcaaccggacagaatttTATAAActgctttcccgacacgagctgg
|
|
|
1106 >
|
|
|
1107 ttcgtcagcgcatcagattcttTATAATgacgcccgtttcccccccttgg
|
|
|
1108 >
|
|
|
1109 ttgtagtgtagaatgcggcgttTCTATTaatacagacgttaagctcagaa
|
|
|
1110 >
|
|
|
1111 gaataattgagggatgacctcaTTTAATctccagtagcaactttgatccg
|
|
|
1112 >
|
|
|
1113 gacagcgtgaaaacagtacgggTACTGTactaaagtcacttaaggaaaca
|
|
|
1114 >
|
|
|
1115 ttgaaaactttactttatgtgtTATCGTtacgtcatcctcgctgaggatc
|
|
|
1116 >
|
|
|
1117 ttgaaaccctgaaactgatcccCATAATaagcgaagttagcgagatgaat
|
|
|
1118 >
|
|
|
1119 ggaaatataataagtgatcgctTACACTacgcgacgaaatactttttttg
|
|
|
1120 >
|
|
|
1121 acgcaaataatttgtggtgatcTACACTgatactctgttgcattattcgc
|
|
|
1122 >
|
|
|
1123 tgcattattcgcctgaaaccacAATATTcaggcgttttttcgctatcttt
|
|
|
1124 >
|
|
|
1125 ttgcctcagattctcagtatgtTAGGGTagaaaaaagtgactatttccat
|
|
|
1126 >
|
|
|
1127 ttactttatttgtcactgtcgtTACTATatcggctgaaattaatgaggtc
|
|
|
1128 >
|
|
|
1129 taccttcccagtcaagaaaactTATCTTattcccacttttcagttaccag
|
|
|
1130 >
|
|
|
1131 ttgatactgtatgagcatacagTATAATtgcttcaacagaacatattgac
|
|
|
1132 >
|
|
|
1133 cttttaaatctttcaatctgatTAGATTaggttgccgtttggtaataaaa
|
|
|
1134 >
|
|
|
1135 gcggcagcgtggcggaaggttgTAAACTgcacctcgaagaacaagaggcc
|
|
|
1136 >
|
|
|
1137 tgcgtcgcaaccgacaattacgTATTCTgagtcttcgggtgaacagagtg
|
|
|
1138 >
|
|
|
1139 gttattttgccgcaggtcagcgTATCGTgaacatcttttccagtgttcag
|
|
|
1140 >
|
|
|
1141 tcattcgttctcttacgctcccTATAGTcgaaacatctgatggcaagaaa
|
|
|
1142 >
|
|
|
1143 taatccacaccgtttgccccgtTAACCTtaccttctcttctgttttatgg
|
|
|
1144 >
|
|
|
1145 tgtggcacaggtcatgttcgggTATACTgctttcccgtcttggttattcc
|
|
|
1146 >
|
|
|
1147 aaaacatttaccccaaaggggcTATTTTctcactcctgatttcaatagtg
|
|
|
1148 >
|
|
|
1149 tattacagagcgttttttatttGAAAATgaatccatgagttcatttcaga
|
|
|
1150 >
|
|
|
1151 ggtagaagctcaacggacaattTATAATggctcagattaaaaaaactaat
|
|
|
1152 >
|
|
|
1153 tgcgcaatctatccgcttacttTATGATgcgcaccagtcacggactgatg
|
|
|
1154 >
|
|
|
1155 acacctgcgtgagttgttcacgTATTTTttcactatgtcttactctctgc
|
|
|
1156 >
|
|
|
1157 tccttttattccacgtttcgctTATCCTagctgaagcgtttcagtcgatt
|
|
|
1158 >
|
|
|
1159 gttcgaggcaggtttgtacggtTATACTtatcttgaagatgagtaagtcc
|
|
|
1160 >
|
|
|
1161 aatttcccatacagagctaaggGATAATgcgtagcgttcacgtaactgga
|
|
|
1162 >
|
|
|
1163 tctccaaaatatattcacgttgTAAATTgtttaacgtcaaatttcccata
|
|
|
1164 >
|
|
|
1165 taacaaaaaaccagtccgcgaaGTTGATagaatcccatcatctcgcacgg
|
|
|
1166 >
|
|
|
1167 acaacagtaaaatcagagcgttTCTGCTtttactgatgtctggcggtcgg
|
|
|
1168 >
|
|
|
1169 ttacatcaacccgcattggtccTACACTgcgcggtaataaagcgaggtaa
|
|
|
1170 >
|
|
|
1171 cgcccctggagaaagcctcgtgTATACTcctcacccttataaaagtccct
|
|
|
1172 >
|
|
|
1173 tacaaagcagcagcaattgcagTAAAATtccgcaccattttgaaataagc
|
|
|
1174 >
|
|
|
1175 caccgggcaacttttagagcacTATCGTggtacaaataatgctgccaccc
|
|
|
1176 >
|
|
|
1177 aaaaactgtcgatgtgggacgaTATAGCagataagaatattgctgagcaa
|
|
|
1178 >
|
|
|
1179 gcacatatcctgttcatttcatTTTGATacacttcatgccgtcaatgagg
|
|
|
1180 >
|
|
|
1181 gtcttttgtactcgtgtactggTACAGTgcaatgcataacaacgcagtcg
|
|
|
1182 >
|
|
|
1183 tgcgataacaggtcgctacgagTAGAATactgccgcttaacgtcgcgtaa
|
|
|
1184 >
|
|
|
1185 tgcattttttacccaaaacgagTAGAATttgccacgtttcaggcgcgggg
|
|
|
1186 >
|
|
|
1187 tgacctgtatcagctttcccgaTAAGTTggaaatccgctggaagctttct
|
|
|
1188 >
|
|
|
1189 gtttctcaataacgaaatttgaTAAAATcccgctctttcataacattatt
|
|
|
1190 >
|
|
|
1191 ataaaaattcatctgtatgcacAATAATgttgtatcaaccaccatatcgg
|
|
|
1192 >
|
|
|
1193 tgattatcttccctgataagacCAGTATttagctgccaattgctacgaaa
|
|
|
1194 >
|
|
|
1195 acccatatccttgaagcggtgtTATAATgccgcgccctcgatatggggat
|
|
|
1196 >
|
|
|
1197 ttgcgttcggtggttaagtatgTATAATgcgcgggcttgtcgtagttgac
|
|
|
1198 >
|
|
|
1199 tgacaccttttcggcatcgcccTAAAATtcggcgtcctcatattgtgtga
|
|
|
1200 >
|
|
|
1201 agacacaaagcgaaagctatgcTAAAACagtcaggatgctacagtaatac
|
|
|
1202 >
|
|
|
1203 gccaaacccgctggagtattgaGATAATtttcagtctgactctcgcaata
|
|
|
1204 >
|
|
|
1205 tgacgcgcgcaggtatttagcaTACAAGgagtaccgatttgagagttggt
|
|
|
1206 >
|
|
|
1207 acacctaaaatgctatttctgcGATAATagcaaccgtttcgtgacaggaa
|
|
|
1208 >
|
|
|
1209 attgtatacttaagctgctgttTAATATgctttgtaacaatttaggctga
|
|
|
1210 >
|
|
|
1211 ggaaggtcaacatcgagcctggCAAACTagcgataacgttgtgttgaaaa
|
|
|
1212 >
|
|
|
1213 taacgccacgcttgaggtaacaGAGATTgttttacctgctggggagtggc
|
|
|
1214 >
|
|
|
1215 tttttctgtaattcgagcatgtCATGTTaccccgcgagcataaaacgcgt
|
|
|
1216 >
|
|
|
1217 tgtcatctttctgacaccttacTATCTTacaaatgtaacaaaaaagttat
|
|
|
1218 >
|
|
|
1219 ttttatgctgacaaaggcacttTTTTCTgtttatctatcaataaattcag
|
|
|
1220 >
|
|
|
1221 ttccaatatcataaaaatcgggTATGTTttagcagagtatgctgctaaag
|
|
|
1222 >
|
|
|
1223 ggtctgataaaacagtgaatgaTAACCTcgttgctcttaagctctggcac
|
|
|
1224 >
|
|
|
1225 gaacttgtggataaaatcacggTCTGATaaaacagtgaatgataacctcg
|
|
|
1226 >
|
|
|
1227 gaacttgtggataaaatcacggTCTGATaaaacagtgaatgataacctcg
|
|
|
1228 >
|
|
|
1229 cgcctgaataataaaagcgtgtTATACTctttccctgcaatgggttccgt
|
|
|
1230 >
|
|
|
1231 attgacggatcatccgggtcgcTATAAGgtaaggatggtcttaacactga
|
|
|
1232 >
|
|
|
1233 tgacttatccgcttcgaagagaGACACTacctgcaacaatcaggagcgca
|
|
|
1234 >
|
|
|
1235 tgacgttttcacattctgttgaCAGATTgtaggtcacgaggggcatttta
|
|
|
1236 >
|
|
|
1237 tgcatcacccgccaatgcgtggCTTAATgcacatcaacggtttgacgtac
|
|
|
1238 >
|
|
|
1239 gttttgtttggcttatcgctggCAAACTgtctgaaatcgcagcaataagg
|
|
|
1240 >
|
|
|
1241 ggacagttaaccgattcagtgcCAGATTtcgcagtatctacaaggtccgg
|
|
|
1242 >
|
|
|
1243 tgcggaaaaaacgcgcgcgaggCAGCATtgactttactaggtcgtgcacg
|
|
|
1244 >
|
|
|
1245 cgtcgcgacctataagtttgggTAATATgtgctggaatttgccctgtctg
|
|
|
1246 >
|
|
|
1247 atctcaggcctgatttgctgctGATTTTtacaatgcatgcctcacgcagg
|
|
|
1248 >
|
|
|
1249 ttgaaaagttcatttccagaccCATTTTtacatcgtagccgatgaggacg
|
|
|
1250 >
|
|
|
1251 agatgtttaccgtggaaaagggTAAAATaacggattaacccaagtataaa
|
|
|
1252 >
|
|
|
1253 gcatcaggacgttcgctattacTTAAATggtatgctgtttgaaaccgaag
|
|
|
1254 >
|
|
|
1255 tatgaaatttaccgtagaacgtGAGCATttattaaaaccgctacaacagg
|
|
|
1256 >
|
|
|
1257 tcagaagacggtggcggagtacTACAAGatcaaagtcgcggatctccttt
|
|
|
1258 >
|
|
|
1259 gcaggaaaaactggtcaccatcGACAATattcagaagacggtggcggagt
|
|
|
1260 >
|
|
|
1261 gcgttctttatcgccaagcgtcTACGATctaacgtacgtgagctggaagg
|
|
|
1262 >
|
|
|
1263 cccgcctcgcggcaggatcgttTACACTtagcgagttctggaaagtcctg
|
|
|
1264 >
|
|
|
1265 agacaaaaattggcttaatcgaTCTAATaaagatccaggacgatccttgc
|
|
|
1266 >
|
|
|
1267 ttgcgctttacccatcagcccgTATAATcctccacccggcgcgccatgct
|
|
|
1268 >
|
|
|
1269 tgactccggagtgtacaattatTACAATccggcctctttaatcacccatg
|
|
|
1270 >
|
|
|
1271 gttttttcaaggtgaagcggttTAAATTcgttctcaaattacagtcagga
|
|
|
1272 >
|
|
|
1273 gacaaaaggcgtgacgatggtcGAAAATggcgctttcgtcagcggggata
|
|
|
1274 >
|
|
|
1275 tggcagtctttctgcctaacgtTTTGTTtatgatatttgcctggcgtcac
|
|
|
1276 >
|
|
|
1277 ttgaaatcacgggggcgcaccgTATAATttgaccgctttttgatgcttga
|
|
|
1278 >
|
|
|
1279 gttttcccaactcagtcaggatTAAACTgtgggtcagcgaaacgtttcgc
|
|
|
1280 >
|
|
|
1281 ttatttttaaaaaacaacaattTATATTgaaattattaaacgcatcataa
|
|
|
1282 >
|
|
|
1283 ttgccagcccacggtcggtcgaCTTACTgtttagtcagttaaataaactg
|
|
|
1284 >
|
|
|
1285 ggaaatttattgcggaaattgaTATATTcacaacgtcacattgcaatttt
|
|
|
1286 >
|
|
|
1287 atatatcaatttccgcaataaaTTTCCTgtcatatagtgaattcaatctc
|
|
|
1288 >
|
|
|
1289 tcacattcaaatgcgattctgcTACAATcctccccccgttcgaagattga
|
|
|
1290 >
|
|
|
1291 ggacgcccggcgtgagtcatgcTAACTTagtgttgacttcgtattaaaca
|
|
|
1292 >
|
|
|
1293 ttacggtcaatcagcaaggtgtTAAATTgatcacgttttagaccattttt
|
|
|
1294 >
|
|
|
1295 ttggcatctctgacctcgctgaTATAATcagcaaatctgtatatataccc
|
|
|
1296 >
|
|
|
1297 gaaaaaatgttaaacccttcggTAAAGTgtctttttgcttcttctgacta
|
|
|
1298 >
|
|
|
1299 tgcatatttttaacacaaaataCACACTtcgactcatctggtacgaccag
|
|
|
1300 >
|
|
|
1301 gcgctttttatccgtaaaaagcTATAATgcactaaaatggtgcaacctgt
|
|
|
1302 >
|
|
|
1303 gcaccaacatggtgcttaatgtTTCCATtgaagcactatattggtgcaac
|
|
|
1304 >
|
|
|
1305 ggtaagaacctgacctcgtgatTACTATttcgccgtgttgacgacatcag
|
|
|
1306 >
|
|
|
1307 ttttcaatatcatttaattaacTATAATgaaccaactgcttacgcggcat
|
|
|
1308 >
|
|
|
1309 tctcgtttttgctcgttaacgaTAAGTTtacagcatgcctacaagcatcg
|
|
|
1310 >
|
|
|
1311 attgacgtccattaacacaatgTTTACTctggtgcctgacatttcaccga
|
|
|
1312 >
|
|
|
1313 tttcggttgacgcccttcggctTTTCCTtcatctttacatctggacgtct
|
|
|
1314 >
|
|
|
1315 gttgacacacctctggtcatgaTAGTATcaatattcatgcagtatttatg
|
|
|
1316 >
|
|
|
1317 tttattacgctcaacgttagtgTATTTTtattcataaatactgcatgaat
|
|
|
1318 >
|
|
|
1319 gcgctgaaacagtcaaagcggtTATGTTcatatgcggatggcgatttaca
|
|
|
1320 >
|
|
|
1321 gatagggataatcgttcattgcTATTCTacctatcgccatgaactatcgt
|
|
|
1322 >
|
|
|
1323 tggacatctgatgagcaatcccTACAATcgccgcgtactttaatttttca
|
|
|
1324 >
|
|
|
1325 gacagtaacttgttacaacctgTAGCATccacttgccggtcctgtgagtt
|
|
|
1326 >
|
|
|
1327 tgcatgaactcgcatgtctccaTAGAATgcgcgctacttgatgccgactt
|
|
|
1328 >
|
|
|
1329 gacgcaatgcgcactaaaagggCATCATttgatgccctttttgcacgctt
|
|
|
1330 >
|
|
|
1331 tgcacaaggcgtgagattggaaTACAATttcgcgccttttgtttttatgg
|
|
|
1332 >
|
|
|
1333 ttacgtgggcggtgattttgtcTACAATcttacccccacgtataatgctt
|
|
|
1334 >
|
|
|
1335 tttgactactgctgtgcctttcAATGCTtgtttctatcgacgacttaata
|
|
|
1336 >
|
|
|
1337 ttcgcgagcgttgcgcaaacgtTTTCGTtacaatgcgggcgaaaaataag
|
|
|
1338 >
|
|
|
1339 cgacattggcaaattttctggtTATCTTcagctatctggatgtctaaacg
|
|
|
1340 >
|
|
|
1341 ttgattttgcattttaaatgagTAGTCTtagttgtgctgaacgaaaagag
|
|
|
1342 >
|
|
|
1343 accacagatgcgtttatgccagTATGGTttgttgaatttttattaaatct
|
|
|
1344 >
|
|
|
1345 ttgacaaccgccccgctcacccTTTATTtataaatgtactacctgcgcta
|
|
|
1346 >
|
|
|
1347 tggaaagaggttgccgtataaaGAAACTagagtccgtttaggtgttttca
|
|
|
1348 >
|
|
|
1349 tttaagccatctcctgatgacgCATAGTcagcccatcatgaatgttgctg
|
|
|
1350 >
|
|
|
1351 tccaaaatcgccttttgctgtaTATACTcacagcataactgtatatacac
|
|
|
1352 >
|
|
|
1353 attcattcaggtcaatttgtgtCATAATtaaccgtttgtgatcgccggta
|
|
|
1354 >
|
|
|
1355 gaatgcattacccggagtgttgTGTAACaatgtctggccaggtttgtttc
|
|
|
1356 >
|
|
|
1357 ggtaatggtacaatcgcgcgttTACACTtattcagaacgatttttttcag
|
|
|
1358 >
|
|
|
1359 acctcaagttaacttgaggaatTATACTccccaacagatgaattaacgaa
|
|
|
1360 >
|
|
|
1361 ataaaatgtggcataaaagatgCATACTgtagtcgagagcgcgtatgcgt
|
|
|
1362 >
|
|
|
1363 tgatcacaaatttaaacactggTAGGGTaaaaaggtcattaactgcccaa
|
|
|
1364 >
|
|
|
1365 agtcatcctccctcactcctgcCATAATtctgatattccaggaaagagag
|
|
|
1366 >
|
|
|
1367 ctgtgatctattcagcaaaaatTTAAATaggattatcgcgagggttcaca
|
|
|
1368 >
|
|
|
1369 gtaagcgttagtttcgataagaTAAACTgagttactaatagtcgaggcag
|
|
|
1370 >
|
|
|
1371 ttgaggtaagcgttagtttcgaTAAGATaaactgagttactaatagtcga
|
|
|
1372 >
|
|
|
1373 ggattaatccttttttcgtgagTAATCTtatcgccagtttggtctggtca
|
|
|
1374 >
|
|
|
1375 cggtagaaatcctcaagcagcaTATGATctcgggtattcggtcgatgcag
|
|
|
1376 >
|
|
|
1377 ttgtcacgctgattggtgtcgtTACAATctaacgcatcgccaatgtaaat
|
|
|
1378 >
|
|
|
1379 gtcatgaatccatggcagtgacCATACTaatggtgactgccattgatgga
|
|
|
1380 >
|
|
|
1381 ttttcaaagcgtaaaattgtggCATTCTtcactgttctataagtaagacg
|
|
|
1382 >
|
|
|
1383 ggcattcacaaatgcgcaggggTAAAACgtttcctgtagcaccgtgagtt
|
|
|
1384 >
|
|
|
1385 tttcctgtagcaccgtgagttaTACTTTgtataacttaaggaggtgcaga
|
|
|
1386 >
|
|
|
1387 ttgcgccgcttctgacgatgagTATAATgccggacaatttgccgggagga
|
|
|
1388 >
|
|
|
1389 gccaccgctttcacagaagtggTAGACTtcgttccttatgaagattctct
|
|
|
1390 >
|
|
|
1391 taaggaaaataattcttatttcGATTGTcctttttacccttctcgttcga
|
|
|
1392 >
|
|
|
1393 tggaaacaattttatttccaatTGTAATgataaccattctcatattaata
|
|
|
1394 >
|
|
|
1395 ggcgtttgtatggcaacgttatTATAATtaacagttgctactccatttaa
|
|
|
1396 >
|
|
|
1397 gaacatcgatctcgtcttgtgtTAGAATtctaacatacggttgcaacaac
|
|
|
1398 >
|
|
|
1399 aagtgtgttgcggagtagatgtTAGAATactaacaaactcgcaaggtgaa
|
|
|
1400 >
|
|
|
1401 tcgccgtatcagcgaataacggTATACTgatctgatcatttaaatttgaa
|
|
|
1402 >
|
|
|
1403 ttgcttctggcaacattaagtcTCAAATtttcaaagggtggaagatggct
|
|
|
1404 >
|
|
|
1405 gccagaagcaatggatacaaggTAGCCTcatgcgttattttccctgcttc
|
|
|
1406 >
|
|
|
1407 ttactgatccgcacgtttatgaTATGCTatcgtactctttagcgagtaca
|
|
|
1408 " >
|
|
|
1409 </form>-->
|
|
|
1410
|
|
|
1411
|
|
|
1412 <!--
|
|
|
1413 <hr >
|
|
|
1414 <a name="globins"></a>
|
|
|
1415 <h2>Globins</h2>
|
|
|
1416 <img alt="" src="examples/globins.png" ><br >
|
|
|
1417 The end of the B helix through the beginning of the D helix of 34 globins. This
|
|
|
1418 sequence data was taken from
|
|
|
1419 <a href="http://www.lecb.ncifcrf.gov/~toms/paper/logopaper/">Sequence Logos: A New Way to Display Consensus Sequences</a>.<br ><br >
|
|
|
1420 <form method="post" action="create.cgi">
|
|
|
1421 <input type="submit" name="cmd_edit" value="Edit Logo" >
|
|
|
1422 <input type="hidden" name="logo_start" value="61" >
|
|
|
1423 <input type="hidden" name="logo_end" value="83" >
|
|
|
1424 <input type="hidden" name="show_xaxis" value="true" >
|
|
|
1425 <input type="hidden" name="show_yaxis" value="true" >
|
|
|
1426 <input type="hidden" name="show_errorbars" value="true" >
|
|
|
1427 <input type="hidden" name="show_fineprint" value="true" >
|
|
|
1428 <input type="hidden" name="scale_width" value="true" >
|
|
|
1429 <input type="hidden" name="sequences" value="
|
|
|
1430 >Lamprey GLOBIN V - SEA LAMPREY
|
|
|
1431 PIVDTGSVA-P------------------LSAAEKTKIRSAWAPVYSTY---ETSGVDILVKFFTSTPAAQEFFPKFKGL
|
|
|
1432 TT-----ADQLKKSA---DVRWHA-ERIINAVNDAVASMDDTEKMS--MKL-RDLSGKH----AKSFQV-----DPQYFK
|
|
|
1433 VLAAVI-AD-TVAAGD--AGFEKLMSM------I---CILLR----S-----A-----Y------------
|
|
|
1434 >Hagfish GLOBIN III - ATLANTIC HAGFISH
|
|
|
1435 PITDHGQPP-T------------------LSEGDKKAIRESWPQIYKNF---EQNSLAVLLEFLKKFPKAQDSFPKFSAK
|
|
|
1436 KS-------HLEQDP---AVKLQA-EVIINAVNHTIGLMDKEAAMK--KYL-KDLSTKH----STEFQV-----NPDMFK
|
|
|
1437 ELSAVF-VS-TMG-GK--AAYEKLFSI------I---ATLLR----S-----T-----YDA----------
|
|
|
1438 >Frog HEMOGLOBIN BETA CHAIN - EDIBLE FROG
|
|
|
1439 ----------GS-----------------------DLVSGFWGKV--DA---HKIGGEALARLLVVYPWTQRYFTTFGNL
|
|
|
1440 GSADAIC-----HNA---KVLAHG-EKVLAAIGEGLKHPENLKAHY--AKL-SEYHSNK----LHVDPANFRLLGNVFIT
|
|
|
1441 VLARHF-QH-EFTPELQ-HALEAHFCA------V---GDALA----K-----A-----YH-----------
|
|
|
1442 >African Elephant HEMOGLOBIN BETA CHAIN - AFRICAN ELEPHANT
|
|
|
1443 ----------VN-----------------LTAAEKTQVTNLWGKV--NV---KELGGEALSRLLVVYPWTRRFFEHFGDL
|
|
|
1444 STAEAVL-----HNA---KVLAHG-EKVLTSFGEGLKHLDNLKGTF--ADL-SELHCDK----LHVDPENFRLLGNVLVI
|
|
|
1445 VLARHF-GK-EFTPDVQ-AAYEKVVAG------V---ANALA----H-----K-----YH-----------
|
|
|
1446 >Goat HEMOGLOBIN BETA-A CHAIN - GOAT
|
|
|
1447 ----------M------------------LTAEEKAAVTGFWGKV--KV---DEVGAEALGRLLVVYPWTQRFFEHFGDL
|
|
|
1448 SSADAVM-----NNA---KVKAHG-KKVLDSFSNGMKHLDDLKGTF--AQL-SELHCDK----LHVDPENFKLLGNVLVV
|
|
|
1449 VLARHH-GS-EFTPLLQ-AEFQKVVAG------V---ANALA----H-----R-----YH-----------
|
|
|
1450 >Primate HEMOGLOBIN BETA CHAIN - HUMAN, CHIMPANZEES, AND GORILLA
|
|
|
1451 ----------VH-----------------LTPEEKSAVTALWGKV--NV---DEVGGEALGRLLVVYPWTQRFFESFGDL
|
|
|
1452 STPDAVM-----GNP---KVKAHG-KKVLGAFSDGLAHLDNLKGTF--ATL-SELHCDK----LHVDPENFRLLGNVLVC
|
|
|
1453 VLAHHF-GK-EFTPPVQ-AAYQKVVAG------V---ANALA----H-----K-----YH-----------
|
|
|
1454 >Gibbon HEMOGLOBIN BETA CHAIN - COMMON GIBBON (TENTATIVE SEQUENCE)
|
|
|
1455 ----------VH-----------------LTPEEKSAVTALWGKV--NV---DEVGGEALGRLLVVYPWTQRFFESFGDL
|
|
|
1456 STPDAVM-----GNP---KVKAHG-KKVLGAFSDGLAHLDNLKGTF--AQL-SELHCDK----LHVDPENFRLLGNVLVC
|
|
|
1457 VLAHHF-GK-EFTPQVQ-AAYQKVVAG------V---ANALA----H-----K-----YH-----------
|
|
|
1458 >Dog HEMOGLOBIN BETA CHAIN - DOG AND COYOTE
|
|
|
1459 ----------VH-----------------LTAEEKSLVSGLWGKV--NV---DEVGGEALGRLLIVYPWTQRFFDSFGDL
|
|
|
1460 STPDAVM-----SNA---KVKAHG-KKVLNSFSDGLKNLDNLKGTF--AKL-SELHCDK----LHVDPENFKLLGNVLVC
|
|
|
1461 VLAHHF-GK-EFTPQVQ-AAYQKVVAG------V---ANALA----H-----K-----YH-----------
|
|
|
1462 >Horse HEMOGLOBIN BETA CHAIN - HORSE
|
|
|
1463 ----------VQ-----------------LSGEEKAAVLALWDKV--NE---EEVGGEALGRLLVVYPWTQRFFDSFGDL
|
|
|
1464 SNPGAVM-----GNP---KVKAHG-KKVLHSFGEGVHHLDNLKGTF--AAL-SELHCDK----LHVDPENFRLLGNVLVV
|
|
|
1465 VLARHF-GK-DFTPELQ-ASYQKVVAG------V---ANALA----H-----K-----YH-----------
|
|
|
1466 >Human, Chimp HEMOGLOBIN GAMMA CHAINS - HUMAN AND CHIMPANZEE
|
|
|
1467 ----------GH-----------------FTEEDKATITSLWGKV--NV---EDAGGETLGRLLVVYPWTQRFFDSFGNL
|
|
|
1468 SSASAIM-----GNP---KVKAHG-KKVLTSLGDAIKHLDDLKGTF--AQL-SELHCDK----LHVDPENFKLLGNVLVT
|
|
|
1469 VLAIHF-GK-EFTPEVQ-ASWQKMVTA------V---ASALS----S-----R-----YH-----------
|
|
|
1470 >Nile Crocodile HEMOGLOBIN BETA CHAIN - NILE CROCODILE
|
|
|
1471 ----------AS-----------------FDPHEKQLIGDLWHKV--DV---AHCGGEALSRMLIVYPWKRRYFENFGDI
|
|
|
1472 SNAQAIM-----HNE---KVQAHG-KKVLASFGEAVCHLDGIRAHF--ANL-SKLHCEK----LHVDPENFKLLGDIIII
|
|
|
1473 VLAAHY-PK-DFGLECH-AAYQKLVRQ------V---AAALA----A-----E-----YH-----------
|
|
|
1474 >Chicken HEMOGLOBIN BETA CHAIN - CHICKEN
|
|
|
1475 ----------VH-----------------WTAEEKQLITGLWGKV--NV---AECGAEALARLLIVYPWTQRFFASFGNL
|
|
|
1476 SSPTAIL-----GNP---MVRAHG-KKVLTSFGDAVKNLDNIKNTF--SQL-SELHCDK----LHVDPENFRLLGDILII
|
|
|
1477 VLAAHF-SK-DFTPECQ-AAWQKLVRV------V---AHALA----R-----K-----YH-----------
|
|
|
1478 >NA Opossum HEMOGLOBIN BETA CHAIN - NORTH AMERICAN OPOSSUM
|
|
|
1479 ----------VH-----------------LTSEEKNCITTIWSKV--QV---DQTGGEALGRMLVVYPWTTRFFGSFGDL
|
|
|
1480 SSPGAVM-----SNS---KVQAHG-AKVLTSFGEAVKHLDDLKGTY--AKL-SELHCDK----LHVDPENFKMLG-IIVI
|
|
|
1481 CLAEHF-GK-DFTPECV-A--WKLVAG------V---AHALA----H-----K-----YH-----------
|
|
|
1482 >Carp HEMOGLOBIN BETA CHAINS - CARP
|
|
|
1483 ----------VE-----------------WTDAERSAIIALWGKL--NP---DELGPEALARCLIVYPWTQRFFASYGNL
|
|
|
1484 SSPAAIM-----GNP---KVAAHG-RTVEGGLMRAIKDMDNIKATY--APL-SVMHSEK----LHVDPDNFRLLADCITV
|
|
|
1485 CAAMKFGPS-GFSPNVQ-EAWQKFLSV------V---VNALK----R-----Q-----YH-----------
|
|
|
1486 >Shark HEMOGLOBIN BETA CHAIN - PORT JACKSON SHARK
|
|
|
1487 ----------VH-----------------WSEVELHEITTTWKSI--DK---HSLGAKALARMFIVYPWTTRYFGNLKEF
|
|
|
1488 TA----------CSY---GVKEHA-KKVTGALGVAVTHLGDVKSQF--TDL-SKKHAEE----LHVDVESFKLLAKCFVV
|
|
|
1489 ELGILL-KD-KFAPQTQ-AIWEKYFGV------V---VDAIS----K-----E-----YH-----------
|
|
|
1490 >Shark HEMOGLOBIN ALPHA CHAIN - PORT JACKSON SHARK
|
|
|
1491 ----------S-TSTSTSD----------YSAADRAELAALSKVLAQNA---EAFGAEALARMFTVYAATKSYFKDYKDF
|
|
|
1492 TA----------AAP---SIKAHG-AKVVTALAKACDHLDDLKTHL--HKL-ATFHGSE----LKVDPANFQYLSYCLEV
|
|
|
1493 ALAVHL--T-EFSPETH-CALDKFLTN------V---CHELS----S-----R-----YR-----------
|
|
|
1494 >Carp HEMOGLOBIN ALPHA CHAIN - CARP
|
|
|
1495 ----------S------------------LSDKDKAAVKIAWAKISPKA---DDIGAEALGRMLTVYPQTKTYFAHWADL
|
|
|
1496 SP----------GSG---PVKHGK-KVIMGAVGDAVSKIDDLVGGL--ASL-SELHASK----LRVDPANFKILANHIVV
|
|
|
1497 GIMFYL-PG-DFPPEVH-MSVDKFFQN------L---ALALS----E-----K-----YR-----------
|
|
|
1498 >Bullfrog HEMOGLOBIN ALPHA CHAIN - BULLFROG TADPOLE
|
|
|
1499 ----------S------------------LSASEKAAVLSIVGKIGSQG---SALGSEALTRLFLSFPQTKTYFPHF-DL
|
|
|
1500 TP----------GSA---DLNTHG-GKIINALAGAANHLDDLAGNL--SSL-SDLHAYN----LRVDPGNFPLLAHIIQV
|
|
|
1501 VLATHF-PG-DFTAEVQ-AAWDKFLAL------V---SAVLT----S-----K-----YR-----------
|
|
|
1502 >Nile Crocodile HEMOGLOBIN ALPHA CHAIN - NILE CROCODILE
|
|
|
1503 ----------V------------------LSSDDKCNVKAVWSKVAGHL---EEYGAEALERMFCAYPQTKIYFPHF-DL
|
|
|
1504 SH----------GSA---QIRAHG-KKVFAALHEAVNHIDDLPGAL--CRL-SELHAHS----LRVDPVNFKFLAQCVLV
|
|
|
1505 VVAIHH-PG-SLTPEVH-ASLDKFLCA------V---SSVLT----S-----K-----YR-----------
|
|
|
1506 >Ostrich HEMOGLOBIN ALPHA CHAIN - OSTRICH
|
|
|
1507 ----------V------------------LSGTDKTNVKGIFSKISSHA---EEYGAETLERMFITYPQTKTYFPHF-DL
|
|
|
1508 HH----------GSA---QIKAHG-KKVANALIEAVNHIDDISGAL--SKL-SDLHAQK----LRVDPVNFKLLGQCFLV
|
|
|
1509 VVAIHH-PS-ALTPEVH-ASLDKFLCA------V---GAVLT----A-----K-----YR-----------
|
|
|
1510 >Kangaroo HEMOGLOBIN ALPHA CHAIN - EASTERN GRAY KANGAROO
|
|
|
1511 ----------V------------------LSAADKGHVKAIWGKVGGHA---GEYAAEGLERTFHSFPTTKTYFPHF-DL
|
|
|
1512 SH----------GSA---QIQAHG-KKIADALGQAVEHIDDLPGTL--SKL-SDLHAHK----LRVDPVNFKLLSHCLLV
|
|
|
1513 TFAAHL-GD-AFTPEVH-ASLDKFLAA------V---STVLT----S-----K-----YR-----------
|
|
|
1514 >Armadillo HEMOGLOBIN ALPHA CHAIN - NINE-BANDED ARMADILLO
|
|
|
1515 ----------V------------------LSAADKTHVKAFWGKVGGHA---AEFGAEALERMFASFPPTKTYFSHM-DL
|
|
|
1516 SH----------GSA---QVKAHG-KKVADALTLAVGHLDDLPGAL--STL-SDLHAHK----LRVDPVNFKFLSHCLLV
|
|
|
1517 TLACHL-PD-DFTPAVH-ASMDKFMAG------V---STVLV----S-----K-----YR-----------
|
|
|
1518 >Horse HEMOGLOBIN ALPHA CHAINS - HORSE
|
|
|
1519 ----------V------------------LSAADKTNVKAAWSKVGGHA---GEYGAEALERMFLGFPTTKTYFPHF-DL
|
|
|
1520 SH----------GSA---QVKAHG-KKVGDALTLAVGHLDDLPGAL--SNL-SDLHAHK----LRVDPVNFKLLSHCLLS
|
|
|
1521 TLAVHL-PN-DFTPAVH-ASLDKFLSS------V---STVLT----S-----K-----YR-----------
|
|
|
1522 >Primate HEMOGLOBIN ALPHA CHAIN - HUMAN AND CHIMPANZEES
|
|
|
1523 ----------V------------------LSPADKTNVKAAWGKVGAHA---GEYGAEALERMFLSFPTTKTYFPHF-DL
|
|
|
1524 SH----------GSA---QVKGHG-KKVADALTNAVAHVDDMPNAL--SAL-SDLHAHK----LRVDPVNFKLLSHCLLV
|
|
|
1525 TLAAHL-PA-EFTPAVH-ASLDKFLAS------V---STVLT----S-----K-----YR-----------
|
|
|
1526 >Macaque HEMOGLOBIN ALPHA CHAIN - RHESUS MACAQUE AND JAPANESE MACAQUE
|
|
|
1527 ----------V------------------LSPADKSNVKAAWGKVGGHA---GEYGAEALERMFLSFPTTKTYFPHF-DL
|
|
|
1528 SH----------GSA---QVKGHG-KKVADALTLAVGHVDDMPNAL--SAL-SDLHAHK----LRVDPVNFKLLSHCLLV
|
|
|
1529 TLAAHL-PA-EFTPAVH-ASLDKFLAS------V---STVLT----S-----K-----YR-----------
|
|
|
1530 >Badger HEMOGLOBIN ALPHA CHAIN - EURASIAN BADGER
|
|
|
1531 ----------V------------------LSPADKANIKATWDKIGGHA---GEYGGEALERTFASFPTTKTYFPHF-DL
|
|
|
1532 SH----------GSA---QVKGHG-KKVADALTNAVAHLDDLPGAL--SAL-SDLHAYK----LRVDPVNFKLLSHCLLV
|
|
|
1533 TLACHH-PA-EFTPAVH-ASLDKFLSS------V---STVLT----S-----K-----YR-----------
|
|
|
1534 >Ind Elephant HEMOGLOBIN ALPHA CHAIN - INDIAN ELEPHANT
|
|
|
1535 ----------V------------------LSDKDKTNVKATWSKVGDHA---SDYVAEALERMFFSFPTTKTYFPHF-DL
|
|
|
1536 SH----------GSG---QVKGHG-KKVGEALTQAVGHLDDLPSAL--SAL-SDLHAHK----LRVDPVNFKLLSHCLLV
|
|
|
1537 TLSSHQ-PT-EFTPEVH-ASLDKFLSN------V---STVLT----S-----K-----YR-----------
|
|
|
1538 >Hyrax HEMOGLOBIN ALPHA CHAIN - ABYSSINIAN HYRAX
|
|
|
1539 ----------V------------------LSAADKNNVKGAWEKVGTHA---GEYGAEALERMFLSFPTTKTYFPHF-DL
|
|
|
1540 TH----------GSA---QVKAHG-QKVGAALTKAVGHLDDLPNAL--SDL-SDLHAHK----LRVDPVNFKLLSHCLLV
|
|
|
1541 TLSRHL-PEQEFTPAVH-ASLDKFFSN------V---STVLT----S-----K-----YR-----------
|
|
|
1542 >Tuna MYOGLOBIN - YELLOWFIN TUNA
|
|
|
1543 ----------A----------------------DFDAVLKCWGPVEADY---TTMGGLVLTRLFKEHPETQKLFPKFAGI
|
|
|
1544 -A-----QADIAGNA---AISAHG-ATVLKKLGELLKAKGSHAAIL--KPL-ANSHATK----HKIPINNFKLISEVLVK
|
|
|
1545 VMHEK---A-GLDAGGQ-TALRNVMGI------I---IADLE----ANYKELG-----FSG----------
|
|
|
1546 >Shark MYOGLOBIN - PORT JACKSON SHARK
|
|
|
1547 ----------T----------------------EWEHVNKVWAVVEPDI---PAVGLAILLRLFKEHKETKDLFPKFKEI
|
|
|
1548 -P-----VQQLGNNE---DLRKHG-VTVLRALGNILKQKGKHSTNV--KEL-ADTHINK----HKIPPKNFVLITNIAVK
|
|
|
1549 VLTEMY-PS-DMTGPMQ-ESFSKVFTV------I---CSDLE----TLYKEAN-----FQG----------
|
|
|
1550 >Turtle MYOGLOBIN - MAP TURTLE
|
|
|
1551 ----------G------------------LSDDEWHHVLGIWAKVEPDL---SAHGQEVIIRLFQVHPETQERFAKFKNL
|
|
|
1552 KT-----IDELRSSE---EVKKHG-TTVLTALGRILKLKNNHEPEL--KPL-AESHATK----HKIPVKYLEFICEIIVK
|
|
|
1553 VIAEKH-PS-DFGADSQ-AAMRKALEL------F---RNDMA----SKYKEFG-----FQG----------
|
|
|
1554 >Chicken MYOGLOBIN - CHICKEN
|
|
|
1555 ----------G------------------LSDQEWQQVLTIWGKVEADI---AGHGHEVLMRLFHDHPETLDRFDKFKGL
|
|
|
1556 KT-----EPDMKGSE---DLKKHG-QTVLTALGAQLKKKGHHEADL--KPL-AQTHATK----HKIPVKYLEFISEVIIK
|
|
|
1557 VIAEKH-AA-DFGADSQ-AAMKKALEL------F---RDDMA----SKYKEFG-----FQG----------
|
|
|
1558 >Dog MYOGLOBIN - DOG, BAT-EARED FOX, AFRICAN HUNTING DOG, AND CAPE FOX
|
|
|
1559 ----------G------------------LSDGEWQIVLNIWGKVETDL---AGHGQEVLIRLFKNHPETLDKFDKFKHL
|
|
|
1560 KT-----EDEMKGSE---DLKKHG-NTVLTALGGILKKKGHHEAEL--KPL-AQSHATK----HKIPVKYLEFISDAIIQ
|
|
|
1561 VLQSKH-SG-DFHADTE-AAMKKALEL------F---RNDIA----AKYKELG-----FQG----------
|
|
|
1562 >Badger MYOGLOBIN - EURASIAN BADGER
|
|
|
1563 ----------G------------------LSDGEWQLVLNVWGKVEADL---AGHGQEVLIRLFKGHPETLEKFDKFKHL
|
|
|
1564 KS-----EDEMKGSE---DLKKHG-NTVLTALGGILKKKGHQEAEL--KPL-AQSHATK----HKIPVKYLEFISDAIAQ
|
|
|
1565 VLQSKH-PG-NFAAEAQ-GAMKKALEL------F---RNDIA----AKYKELG-----FQG----------
|
|
|
1566 >Dolphin MYOGLOBIN - SADDLEBACK DOLPHIN
|
|
|
1567 ----------G------------------LSDGEWQLVLNVWGKVEADV---AGHGQDILIRLFKGHPETLEKFDKFKHL
|
|
|
1568 KT-----EADMKASE---DLKKHG-DTVLTALGAILKKKGHHDAEL--KPL-AQSHATK----HKIPIKYLEFISEAIIH
|
|
|
1569 VLHSRH-PA-QFGADAQ-GAMNKALEL------F---RKDIA----AKYKELG-----FHG----------
|
|
|
1570 >Horse, Zebra MYOGLOBIN - HORSE AND PLAINS ZEBRA
|
|
|
1571 ----------G------------------LSDGEWQQVLNVWGKVEADI---AGHGQEVLIRLFTGHPETLEKFDKFKHL
|
|
|
1572 KT-----EAEMKASE---DLKKHG-TVVLTALGGILKKKGHHEAEL--KPL-AQSHATK----HKIPIKYLEFISDAIIH
|
|
|
1573 VLHSKH-PG-NFGADAQ-GAMTKALEL------F---RNDIA----AKYKELG-----FQG----------
|
|
|
1574 >African Elephant MYOGLOBIN - AFRICAN ELEPHANT
|
|
|
1575 ----------G------------------LSDGEWELVLKTWGKVEADI---PGHGEFVLVRLFTGHPETLEKFDKFKHL
|
|
|
1576 KT-----EGEMKASE---DLKKQG-VTVLTALGGILKKKGHHEAEI--QPL-AQSHATK----HKIPIKYLEFISDAIIH
|
|
|
1577 VLQSKH-PA-EFGADAQ-AAMKKALEL------F---RNDIA----AKYKELG-----FQG----------
|
|
|
1578 >Aardvark MYOGLOBIN - AARDVARK
|
|
|
1579 ----------G------------------LSDAEWQLVLNVWGKVEADI---PGHGQDVLIRLFKGHPETLEKFDRFKHL
|
|
|
1580 KT-----EDEMKASE---DLKKHG-TTVLTALGGILKKKGQHEAEI--QPL-AQSHATK----HKIPVKYLEFISEAIIQ
|
|
|
1581 VIQSKH-SG-DFGADAQ-GAMSKALEL------F---RNDIA----AKYKELG-----FQG----------
|
|
|
1582 >Human MYOGLOBIN - HUMAN
|
|
|
1583 ----------G------------------LSDGEWQLVLNVWGKVEADI---PGHGQEVLIRLFKGHPETLEKFDKFKHL
|
|
|
1584 KS-----EDEMKASE---DLKKHG-ATVLTALGGILKKKGHHEAEI--KPL-AQSHATK----HKIPVKYLEFISECIIQ
|
|
|
1585 VLQSKH-PG-DFGADAQ-GAMNKALEL------F---RKDMA----SNYKELG-----FQG----------
|
|
|
1586 >Macaque MYOGLOBIN - CRAB-EATING MACAQUE (TENTATIVE SEQUENCE)
|
|
|
1587 ----------G------------------LSDGEWQLVLNVWGKVEADI---PSHGQEVLIRLFKGHPETLEKFDKFKHL
|
|
|
1588 KS-----EDEMKASE---DLKKHG-VTVLTALGGILKKKGHHEAEI--KPL-AQSHATK----HKIPVKYLELISESIIQ
|
|
|
1589 VLQSKH-PG-DFGADAQ-GAMNKALEL------F---RNDMA----AKYKELG-----FQG----------
|
|
|
1590 >NA Opossum MYOGLOBIN - NORTH AMERICAN OPOSSUM
|
|
|
1591 ----------G------------------LSDGEWQLVLNAWGKVEADI---PGHGQEVLIRLFKGHPETLEKFDKFKHL
|
|
|
1592 KS-----EDEMKASE---DLKKHG-ATVLTALGNILKKKGNHEAEL--KPL-AQSHATK----HKISVQFLEFISEAIIQ
|
|
|
1593 VIQSKH-PG-DFGGDAQ-AAMGKALEL------F---RNDMA----AKYKELG-----FQG----------
|
|
|
1594 >Earthworm GLOBIN AIII - COMMON EARTHWORM
|
|
|
1595 ---------KK------------------QCGVLEGLKVKSEWGRAYGS---GHDREAFSQAIWRATFAQVPESRSLFKR
|
|
|
1596 VH-----GDH-TSDP---AFIAHA-ERVLGGLDIAISTLDQPATLK--EEL-DHLQVQHEG--RKIPDNYFDAFKTAILH
|
|
|
1597 VVAAQL-GE-RCYSNN--EEIHDAIACDGFARVL---PQVLE----R-----G-----IKGHH--------
|
|
|
1598 > SMALL CHAIN - TYLORRHYNCHUS HETEROCHAETUS
|
|
|
1599 ----------T------------------DCGILQRIKVKQQWAQVYSV---GESRTDFAIDVFNNFFRTNPD-RSLFNR
|
|
|
1600 VN-----GDN-VYSP---EFKAHM-VRVFAGFDILISVLDDKPVLD--QAL-AHYAAFH----KQFGTIPFKAFGQTMFQ
|
|
|
1601 TIAEHI--------HG--ADIGAWRAC------Y---AEQIV----T-----G-----ITA----------
|
|
|
1602 >BloodwormGLOBIN, MAJOR MONOMERIC COMPONENT - BLOODWORM
|
|
|
1603 ----------G------------------LSAAQRQVIAATWKDIAGND---NGAGVGKDCLI--KHLSAHPQMAAVFGF
|
|
|
1604 SG-----ASD-PAVA---DLGAKV-LAIGVAVSHLGDGKMVAQMKA--VGV-RHKGYGN----KHIKGQYFEPLGASLLS
|
|
|
1605 AMEHRI-GG-KMNAAA-KDAWAAAYAD------I---SGALI----S-----G-----LQS----------
|
|
|
1606 >Whelk GLOBIN - WHELK
|
|
|
1607 ----------G------------------LDGAQKTALKESWKVLGADGPTMMKNGSLLFGLLFKTYPDTKKHFKHFDDA
|
|
|
1608 TF-----AAM-DTTG---VGKAHG-VAVFSGLGSMICSIDDDDCV---GLA-KKLSRNH--LARGVSAADF-KLLEAVFK
|
|
|
1609 FLDEAT-QR-KATDAQ-KDADGALLTM------L---IKA------------H-----V------------
|
|
|
1610 >Snail GLOBIN - WATER SNAIL
|
|
|
1611 ----------S------------------LQPASKSALASSWKTLAKDAATIQNNGATLFSLLFKQFPDTRNYFTHFGNM
|
|
|
1612 SD-----AEM-KTTG---VGKAHS-MAVFAGIGSMIDSMDDADCMN--GLA-LKLSRNH--IQRKIGASRFGEMRQVFPN
|
|
|
1613 FLDEAL-GG-GASGDV-KGAWDALLAY------LQDNKQA------------Q-----A----L-------
|
|
|
1614 >Clam GLOBIN I - BLOOD CLAM
|
|
|
1615 ----------P--------SVQGAAAQ--LTADVKKDLRDSWKVIGSDK---KGNGVALMTTLFADNQETIGYFKRLGNV
|
|
|
1616 SQ-----GM---AND---KLRGHS-ITLMYALQNFIDQLDNTDDLV--CVV-EKFAVNH--ITRKISAAEFGKINGP---
|
|
|
1617 -IKKVL-AS-KNFGDK-YANAWAKLVA------V---VQA------------A-----L------------
|
|
|
1618 >Midge larvaGLOBIN CTT-II BETA - MIDGE LARVA
|
|
|
1619 ----------A------------------PLSADEASLV---RGSWAQV---KHSEVDILYYIFKANPDIMAKFPQFAGK
|
|
|
1620 DL-----ETL-KGTGQFATHAGRI-VGFVSEIVALMGNSANMPAME--TLI-KDMAANH--KARGIPKAQFNEFRASLVS
|
|
|
1621 YLQSKV----SWNDSL-GAAWTQGLDN------V---FNMMF----S-----Y-----L------------
|
|
|
1622 >Midge larva GLOBINS CTT-I AND CTT-IA - MIDGE LARVA
|
|
|
1623 ----------G------------------P-SGDQIAAA---KASWNTV---KNNQVDILYAVFKANPDIQTAFSQFAGK
|
|
|
1624 DL-----DSI-KGTPDFSKHAGRV-VGLFSEVMDLLGNDANTPTIL--AKA-KDFGKSH--KSRASP-AQLDNFRKSLVV
|
|
|
1625 YLKGAT----KWDSAV-ESSWAPVLDF------V---FSTLK----N-----E-----L------------
|
|
|
1626 >Bacteria BACTERIAL HEMOGLOBIN - VITREOSCILLA SP
|
|
|
1627 -----------------------------MLDQQTINII---KATVPVL---KEHGVTITTTFYKNLFAKHPEVRPLFDM
|
|
|
1628 GR-----Q---ESLEQ-------P-KALAMTVLAAAQNIENLPAIL--PAV-KKIAVKH--CQAGVAAAHYPIVGQELLG
|
|
|
1629 AIKEVL-GD-AATDDI-LDAWGKAYGV------I---ADVFI----Q-----VEADLYA-----Q-AVE--
|
|
|
1630 >P andersonii ONLEGUME HEMOGLOBIN I - PARASPONIA ANDERSONII
|
|
|
1631 ----------V----------------NKVFTEEQEALV---VKAWAVM---KKNSAELGLQFLK-IFEIAPSAKNLFSY
|
|
|
1632 LK-----DSP-VPLEQNPKLKPHA-TTFVMTTESAVQLRKAGKVTVK-ESDLKRIGAIH--FKTGVVNEHFEVTRFALLE
|
|
|
1633 TIKEAV-PE-MWSPEM-KNAWGVAYDQ------L---VAAIK----F-----E-----M-----KPSST--
|
|
|
1634 >Yellow Lupin LEGHEMOGLOBIN I - YELLOW LUPIN
|
|
|
1635 ----------G------------------VLTDVQVALV---KSSFEEF---NANIPKNTHRFFTLVLEIAPGAKDLFSF
|
|
|
1636 LK-----GSS-EVPQNNPDLQAHAGKVFKLTYEAAIQLEVNGAVAS--DATLKSLGSVH--VSKGVVDAHFPVVKEAILK
|
|
|
1637 TIKEVV-GD-KWSEEL-NTAWTIAYDE------L---AIIIK----K-----E-----M-----K-DAA--
|
|
|
1638 >Garden Pea LEGHEMOGLOBIN I - GARDEN PEA
|
|
|
1639 ----------G-------------------FTDKQEALV---NSSSE-F---KQNLPGYSILFYTIVLEKAPAAKGLFSF
|
|
|
1640 LK-----DTA-GVE-DSPKLQAHAEQVFGLVRDSAAQLRTKGEVVL-GNATL---GAIH--VQKGVTNPHFVVVKEALLQ
|
|
|
1641 TIKKAS-GN-NWSEEL-NTAWEVAYDG------L---ATAIKKAMKT---------------------A--
|
|
|
1642 >Broad Bean LEGHEMOGLOBIN I - BROAD BEAN
|
|
|
1643 ----------G-------------------FTEKQEALV---NSSSQLF---KQNPSNYSVLFYTIILQKAPTAKAMFSF
|
|
|
1644 LK-----DSA-GVV-DSPKLGAHAEKVFGMVRDSAVQLRATGEVVL--DGKD---GSIH--IQKGVLDPHFVVVKEALLK
|
|
|
1645 TIKEAS-GD-KWSEEL-SAAWEVAYDG------L---ATAIK----A---------------------A--
|
|
|
1646 >Soybean LEGHEMOGLOBIN C1 - SOYBEAN
|
|
|
1647 ----------G------------------AFTEKQEALV---SSSFEAF---KANIPQYSVVFYNSILEKAPAAKDLFSF
|
|
|
1648 LA-----NGV-DPT--NPKLTGHAEKLFALVRDSAGQLKTNGTVVA--DAAL---VSIH--AQKAVTDPQFVVVKEALLK
|
|
|
1649 TIKEAV-GG-NWSDEL-SSAWEVAYDE------L---AAAIK----K---------------------A--
|
|
|
1650 >Kidney Bean LEGHEMOGLOBIN A - KIDNEY BEAN
|
|
|
1651 ----------G------------------AFTEKQEALV---NSSWEAF---KGNIPQYSVVFYTSILEKAPAAKNLFSF
|
|
|
1652 LA-----NGV-DPT--NPKLTAHAESLFGLVRDSAAQLRANGAVVA--DAAL---GSIH--SQKGVSNDQFLVVKEALLK
|
|
|
1653 TLKQAV-GD-KWTDQL-STALELAYDE------L---AAAIK----K---------------------AYA
|
|
|
1654 " >
|
|
|
1655 </form>
|
|
|
1656 <br >
|
|
|
1657 <br >-->
|
|
|
1658
|
|
|
1659 <!--
|
|
|
1660
|
|
|
1661
|
|
|
1662 <hr >
|
|
|
1663 <a name="HTH"></a>
|
|
|
1664 <h2>HTH Proteins</h2>
|
|
|
1665 <img alt="" src="examples/hth.png" > <br >
|
|
|
1666 Helix-Turn-Helix DNA binding motifs found by the
|
|
|
1667 Gibbs
|
|
|
1668 sampling system. Compared to the <a href="#CAP_HTH">CAP HTH logo</a>
|
|
|
1669 there is much less sequence conservation within the DNA binding helix (11-17),
|
|
|
1670 as might be expected for a diverse sample of proteins.
|
|
|
1671 <form method="post" action="create.cgi">
|
|
|
1672 <input type="submit" name="cmd_edit" value="Edit Logo" >
|
|
|
1673 <input type="hidden" name="logo_title" value ="Helix-Turn-Helix Motifs" >
|
|
|
1674 <input type="hidden" name="first_index" value ="-11" >
|
|
|
1675 <input type="hidden" name="logo_start" value ="1" >
|
|
|
1676 <input type="hidden" name="logo_end" value ="17" >
|
|
|
1677 <input type="hidden" name="yaxis_scale" value ="2.0" >
|
|
|
1678 <input type="hidden" name="show_xaxis" value="true" >
|
|
|
1679 <input type="hidden" name="show_yaxis" value="true" >
|
|
|
1680 <input type="hidden" name="show_errorbars" value="true" >
|
|
|
1681 <input type="hidden" name="show_fineprint" value="true" >
|
|
|
1682 <input type="hidden" name="scale_width" value="true" >
|
|
|
1683 <input type="hidden" name="sequences" value=">A25944 DNA-directed RNA polymerase sigma-37 chain - Bacillu 223-240
|
|
|
1684 iidltyiqnk SQKETGDILGISQMHVSR lqrkavkklr
|
|
|
1685 >A28627 spoIIIC protein - Bacillus subtilis 94-111
|
|
|
1686 rfgldlkkek TQREIAKELGISRSYVSR iekralmkmf
|
|
|
1687 >A32837 *Transcriptional activator nahR - Pseudomonas putida 22-39
|
|
|
1688 vvfnqllvdr RVSITAENLGLTQPAVSN alkrlrtslq
|
|
|
1689 >A23450 Antennapedia homeotic protein - Fruit fly (Drosophil 326-343
|
|
|
1690 fhfnryltrr RRIEIAHALCLTERQIKI wfqnrrmkwk
|
|
|
1691 >B26499 Regulatory protein ntrC - Bradyrhizobium sp. 449-466
|
|
|
1692 ltaalaatrg NQIRAADLLGLNRNTLRK kirdldiqvy
|
|
|
1693 >BVECDA dicA protein - Escherichia coli | 1551.0 1.0 1.0 1.0 22-39
|
|
|
1694 iryrrknlkh TQRSLAKALKISHVSVSQ wergdseptg
|
|
|
1695 >C29010 Mercuric resistance operon regulatory merD protein - 5-22
|
|
|
1696 ------mnay TVSRLALDAGVSVHIVRD yllrgllrpv
|
|
|
1697 >DNECFS DNA-binding protein fis - Escherichia coli | 928.0 1 73-90
|
|
|
1698 ldmvmqytrg NQTRAALMMGINRGTLRK klkkygmn--
|
|
|
1699 >JEBY1 Mating hormone a1 - Yeast (Saccharomyces cerevisiae) 99-116
|
|
|
1700 frrkqslnsk EKEEVAKKCGITPLQVRV wfinkrmrsk
|
|
|
1701 >QCBP2L Regulatory protein cII - Phage lambda | 1559.0 2.0 1 25-42
|
|
|
1702 sallnkiaml GTEKTAEAVGVDKSQISR wkrdwipkfs
|
|
|
1703 >QRECC cAMP receptor protein (CAP) - Escherichia coli | 1507 169-186
|
|
|
1704 thpdgmqiki TRQEIGQIVGCSRETVGR ilkmledqnl
|
|
|
1705 >RCBPL Regulatory protein cro - Phage lambda | 1555.0 1.0 1. 15-32
|
|
|
1706 itlkdyamrf GQTKTAKDLGVYQSAINK aihagrkifl
|
|
|
1707 >RGBP22 Regulatory protein cro - Phage P22 | 1556.0 1.0 1.0 12-29
|
|
|
1708 ykkdvidhfg TQRAVAKALGISDAAVSQ wkevipekda
|
|
|
1709 >RGECA Arabinose operon regulatory protein - Escherichia col 196-213
|
|
|
1710 isdhladsnf DIASVAQHVCLSPSRLSH lfrqqlgisv
|
|
|
1711 >RGECF Regulatory protein fnr - Escherichia coli | 1507.0 1. 196-213
|
|
|
1712 fsprefrltm TRGDIGNYLGLTVETISR llgrfqksgm
|
|
|
1713 >RGECH Heat shock regulatory protein - Escherichia coli | 30 252-269
|
|
|
1714 arwldednks TLQELADRYGVSAERVRQ leknamkklr
|
|
|
1715 >RGKBCP Nitrogen assimilation regulatory protein - Klebsiell 444-461
|
|
|
1716 lttalrhtqg HKQEAARLLGWGRNTLTR klkelgme--
|
|
|
1717 >RPECCT cyt repressor - Escherichia coli | 1291.0 3.0 1.0 1. 11-28
|
|
|
1718 mkakkqetaa TMKDVALKAKVSTATVSR almnpdkvsq
|
|
|
1719 >RPECDO Deo operon repressor - Escherichia coli | 1536.0 1.0 23-40
|
|
|
1720 lqelkrsdkl HLKDAAALLGVSEMTIRR dlnnhsapvv
|
|
|
1721 >RPECG gal repressor - Escherichia coli | 1291.0 4.0 1.0 1.0 3-20
|
|
|
1722 --------ma TIKDVARLAGVSVATVSR vinnspkase
|
|
|
1723 >RPECL lac repressor - Escherichia coli | 1291.0 2.0 1.0 1.0 5-22
|
|
|
1724 ------mkpv TLYDVAEYAGVSYQTVSR vvnqashvsa
|
|
|
1725 >RPECTN TetR repressor - Escherichia coli transposon Tn10 | 26-43
|
|
|
1726 llnevgiegl TTRKLAQKLGVEQPTLYW hvknkralld
|
|
|
1727 >RPECW trp repressor - Escherichia coli | 1534.0 1.0 1.0 1.0 67-84
|
|
|
1728 iveellrgem SQRELKNELGAGIATITR gsnslkaapv
|
|
|
1729 >S02513 Regulatory protein nifA - Klebsiella pneumoniae 495-512
|
|
|
1730 liaalekagw VQAKAARLLGMTPRQVAY riqimditmp
|
|
|
1731 >S07337 *spoIIG protein - Bacillus subtilis 205-222
|
|
|
1732 rfglvgeeek TQKDVADMMGISQSYISR lekriikrlr
|
|
|
1733 >S07958 *DNA-invertase - Escherichia coli 160-177
|
|
|
1734 qagrliaagt PRQKVAIIYDVGVSTLYK tfpagdk---
|
|
|
1735 >S08477 Regulatory protein purR - Escherichia coli 3-20
|
|
|
1736 -------ma TIKDVAKRANVSTTTVSH vinktrfvae-
|
|
|
1737 >S09205 *ebgR protein - Escherichia coli 3-20
|
|
|
1738 --------ma TLKDIAIEAGVSLATVSR vlnddptlnv
|
|
|
1739 >S11945 *lexA repressor - Escherichia coli 27-44
|
|
|
1740 dhisqtgmpp TRAEIAQRLGFRSPNAAE ehlkalarkg
|
|
|
1741 >Z1BPC2 Regulatory protein cI - Phage P22 | 1559.0 1.0 1.0 1 25-42
|
|
|
1742 ssilnriair GQRKVADALGINESQISR wkgdfipkmg
|
|
|
1743 " >
|
|
|
1744 </form>
|
|
|
1745
|
|
|
1746 <br ><br >
|
|
|
1747 <hr >
|
|
|
1748 <a name="splice"></a>
|
|
|
1749 <h2>Human Splice Sites</h2>
|
|
|
1750
|
|
|
1751 <img alt="" src="examples/exon-intron.png" ><img alt="" src="examples/intron-exon.png" > <br >
|
|
|
1752 <br >
|
|
|
1753 These logos show a small sample of Human intron-exon
|
|
|
1754 splice boundaries. Sequences of experimentally
|
|
|
1755 confirmed genes were extracted from
|
|
|
1756 <a href="http://mcb.harvard.edu/gilbert/EID/">EID: the Exon-Intron
|
|
|
1757 database</a>.
|
|
|
1758 Additional discussion of the features in this logo can be found in
|
|
|
1759 the paper
|
|
|
1760 <a href="http://www.lecb.ncifcrf.gov/~toms/paper/splice/">
|
|
|
1761 Features of spliceosome evolution...</a>-->
|
|
|
1762 <!--
|
|
|
1763 <form method="post" action="create.cgi">
|
|
|
1764 <input type="submit" name="cmd_edit" value="Edit Logo" >
|
|
|
1765 Exon-Intron (Donor) Sites
|
|
|
1766 <input type="hidden" name="logo_title" value="exon | intron" >
|
|
|
1767 <input type="hidden" name="first_index" value="-11" >
|
|
|
1768 <input type="hidden" name="logo_start" value="-6" >
|
|
|
1769 <input type="hidden" name="logo_end" value="8" >
|
|
|
1770 <input type="hidden" name="show_xaxis" value="true" >
|
|
|
1771 <input type="hidden" name="show_yaxis" value="true" >
|
|
|
1772 <input type="hidden" name="show_errorbars" value="true" >
|
|
|
1773 <input type="hidden" name="show_fineprint" value="true" >
|
|
|
1774 <input type="hidden" name="scale_width" value="true" >
|
|
|
1775 <input type="hidden" name="sequences" value="
|
|
|
1776 > 19082_AF115399
|
|
|
1777 GGATCGACCCTgtaagtttt
|
|
|
1778 > 45328_AB000381
|
|
|
1779 GCGCGCTCAGTgtaagtatc
|
|
|
1780 > 45328_AB000381
|
|
|
1781 AATCTCCATTCgtaagtacc
|
|
|
1782 > 45330_AB001517
|
|
|
1783 ACTGGACGCTGgtaaggact
|
|
|
1784 > 45331_AB001517
|
|
|
1785 TCGCTTACCGGgtgagcgcg
|
|
|
1786 > 45331_AB001517
|
|
|
1787 GACCTTAAAAAgtaagtatg
|
|
|
1788 > 45331_AB001517
|
|
|
1789 CGTCGATGAAGgtacttgcc
|
|
|
1790 > 45331_AB001517
|
|
|
1791 CCTGATGGCAGgtaaggggg
|
|
|
1792 > 45331_AB001517
|
|
|
1793 GATGACTCCAGgtgcggcct
|
|
|
1794 > 45331_AB001517
|
|
|
1795 ACAGCCTGGACgtatgtccc
|
|
|
1796 > 45331_AB001517
|
|
|
1797 CGGCTGGCCAAgtaggtctc
|
|
|
1798 > 45331_AB001517
|
|
|
1799 CACTCCCTGAGgtaagcctt
|
|
|
1800 > 45331_AB001517
|
|
|
1801 TGGCTGTTCAGgtttgtccc
|
|
|
1802 > 45331_AB001517
|
|
|
1803 ACGACGGCAAGgtaggctcc
|
|
|
1804 > 45331_AB001517
|
|
|
1805 GACCTTCACAGgtgatgttt
|
|
|
1806 > 45331_AB001517
|
|
|
1807 GGCTCCTTGATgtaagcacc
|
|
|
1808 > 45331_AB001517
|
|
|
1809 GACCTCTGATGgtgagcacg
|
|
|
1810 > 45331_AB001517
|
|
|
1811 GCCAAGGGGAAgtgagtgtc
|
|
|
1812 > 45331_AB001517
|
|
|
1813 ACGCCATGGAGgtgagccgc
|
|
|
1814 > 45331_AB001517
|
|
|
1815 CGTCAGGAAAGgtgagcaga
|
|
|
1816 > 45331_AB001517
|
|
|
1817 CTCTCCCACTGgtgagcact
|
|
|
1818 > 45331_AB001517
|
|
|
1819 CAGGGGCGAGAgtgagttgg
|
|
|
1820 > 45331_AB001517
|
|
|
1821 CTGAAGTCCAGgtagagggt
|
|
|
1822 > 45331_AB001517
|
|
|
1823 CTGTCGAAACTgtacgtgtg
|
|
|
1824 > 45332_AB001517
|
|
|
1825 GGGTCGCGCTGgtgagtgga
|
|
|
1826 > 45332_AB001517
|
|
|
1827 GAGGCCTCGGCgtaagtcct
|
|
|
1828 > 45332_AB001517
|
|
|
1829 GGCGAGAGCAGgtgtggggg
|
|
|
1830 > 45332_AB001517
|
|
|
1831 GCTAAAAACCTgtgcgtatt
|
|
|
1832 > 45332_AB001517
|
|
|
1833 AAGCCCATCGGgtgtgtaca
|
|
|
1834 > 45333_AB001517
|
|
|
1835 GGGTCGCGCTGgtgagtgga
|
|
|
1836 > 45333_AB001517
|
|
|
1837 GAGGCCTCGGCgtaagtcct
|
|
|
1838 > 45333_AB001517
|
|
|
1839 GGCGAGAGCAGgtgtggggg
|
|
|
1840 > 45333_AB001517
|
|
|
1841 GCTAAAAACCTgtgcgtatt
|
|
|
1842 > 45334_AB001523
|
|
|
1843 CATCGTCACCTgtgagtgcc
|
|
|
1844 > 45334_AB001523
|
|
|
1845 GAATGGAGAAGgtatgagtt
|
|
|
1846 > 45334_AB001523
|
|
|
1847 CAGAGTGCTGTgtgagtacc
|
|
|
1848 > 45334_AB001523
|
|
|
1849 CAGAGTGACAGgtaagtgta
|
|
|
1850 > 45334_AB001523
|
|
|
1851 TCATGGTTCAGgtacttgac
|
|
|
1852 > 45334_AB001523
|
|
|
1853 CGGGGCCGGGGgtgagtagt
|
|
|
1854 > 45334_AB001523
|
|
|
1855 AGCTCTTAGAAgtgagtcgg
|
|
|
1856 > 45334_AB001523
|
|
|
1857 CCACAGAAAAGgtgcctacc
|
|
|
1858 > 45334_AB001523
|
|
|
1859 ACCAGAAACAGgtacttttt
|
|
|
1860 > 45334_AB001523
|
|
|
1861 AACACTACTTAgtaagtatt
|
|
|
1862 > 45334_AB001523
|
|
|
1863 GAGTTTTACATgtaattgat
|
|
|
1864 > 45334_AB001523
|
|
|
1865 CAAATTGAAAAgtatccttt
|
|
|
1866 > 45334_AB001523
|
|
|
1867 AGACAGCCCAGgtaagacca
|
|
|
1868 > 45334_AB001523
|
|
|
1869 TCAGGACTCAGgtatgcgtt
|
|
|
1870 > 45334_AB001523
|
|
|
1871 GCCGCTGGCTGgtgagtggg
|
|
|
1872 > 45334_AB001523
|
|
|
1873 CAACACGAGAGgtgaggtgc
|
|
|
1874 > 45334_AB001523
|
|
|
1875 CAGACCACAAAgtgagtagg
|
|
|
1876 > 45334_AB001523
|
|
|
1877 TCAGGAACACGgtaacggag
|
|
|
1878 > 45334_AB001523
|
|
|
1879 AGTCCCAGCAGgtaaacatt
|
|
|
1880 > 45334_AB001523
|
|
|
1881 AAAATTTTTTTgtaagtgat
|
|
|
1882 > 45334_AB001523
|
|
|
1883 TATGTATGAAGgtaggtggt
|
|
|
1884 > 45334_AB001523
|
|
|
1885 ACTGGACGCTGgtaaggact
|
|
|
1886 > 45335_AB001523
|
|
|
1887 TCGCTTACCGGgtgagcgcg
|
|
|
1888 > 45337_AB00189S
|
|
|
1889 TGTGGTACCTGgtgagtagg
|
|
|
1890 > 45337_AB00189S
|
|
|
1891 CCCCAAATTATgtaagtcaa
|
|
|
1892 > 45337_AB00189S
|
|
|
1893 AATGAAAATAAgtacgtcac
|
|
|
1894 > 45338_AB00189S
|
|
|
1895 TGTGGTACCTGgtgagtagg
|
|
|
1896 > 45338_AB00189S
|
|
|
1897 CCCCAAATTATgtaagtcaa
|
|
|
1898 > 45338_AB00189S
|
|
|
1899 AATGAAAATAAgtacgtcac
|
|
|
1900 > 45338_AB00189S
|
|
|
1901 GGAGAAGCAAGgtcagtggc
|
|
|
1902 > 45339_AB00189S
|
|
|
1903 TGTGGTACCTGgtgagtagg
|
|
|
1904 > 45339_AB00189S
|
|
|
1905 CCCCAAATTATgtaagtcaa
|
|
|
1906 > 45339_AB00189S
|
|
|
1907 AATGAAAATAAgtacgtcac
|
|
|
1908 > 45339_AB00189S
|
|
|
1909 GGAGAAGCAAGgtcagtggc
|
|
|
1910 > 45340_AB00189S
|
|
|
1911 TGTGGTACCTGgtgagtagg
|
|
|
1912 > 45340_AB00189S
|
|
|
1913 CCCCAAATTATgtaagtcaa
|
|
|
1914 > 45340_AB00189S
|
|
|
1915 AATGAAAATAAgtacgtcac
|
|
|
1916 > 45341_AB00189S
|
|
|
1917 TGTGGTACCTGgtgagtagg
|
|
|
1918 > 45341_AB00189S
|
|
|
1919 CCCCAAATTATgtaagtcaa
|
|
|
1920 > 45341_AB00189S
|
|
|
1921 AATGAAAATAAgtacgtcac
|
|
|
1922 > 45341_AB00189S
|
|
|
1923 AAGACCAGCAGgtaatgcat
|
|
|
1924 > 45342_AB00189S
|
|
|
1925 TGTGGTACCTGgtgagtagg
|
|
|
1926 > 45342_AB00189S
|
|
|
1927 CCCCAAATTATgtaagtcaa
|
|
|
1928 > 45342_AB00189S
|
|
|
1929 AATGAAAATAAgtacgtcac
|
|
|
1930 > 45342_AB00189S
|
|
|
1931 AGATTACACAGgtaatgagc
|
|
|
1932 > 45342_AB00189S
|
|
|
1933 AAGACCAGCAGgtaatgcat
|
|
|
1934 > 45342_AB00189S
|
|
|
1935 GTGTGTCGAAGgtacggtcc
|
|
|
1936 > 45342_AB00189S
|
|
|
1937 GTGCAGCAACGgtgagcagc
|
|
|
1938 > 45343_AB00189S
|
|
|
1939 TGTGGTACCTGgtgagtagg
|
|
|
1940 > 45343_AB00189S
|
|
|
1941 CCCCAAATTATgtaagtcaa
|
|
|
1942 > 45343_AB00189S
|
|
|
1943 AATGAAAATAAgtacgtcac
|
|
|
1944 > 45343_AB00189S
|
|
|
1945 AAGACCAGCAGgtaatgcat
|
|
|
1946 > 45343_AB00189S
|
|
|
1947 GTGTGTCGAAGgtacggtcc
|
|
|
1948 > 45343_AB00189S
|
|
|
1949 GTGCAGCAACGgtgagcagc
|
|
|
1950 > 45344_AB00189S
|
|
|
1951 TGTGGTACCTGgtgagtagg
|
|
|
1952 > 45344_AB00189S
|
|
|
1953 CCCCAAATTATgtaagtcaa
|
|
|
1954 > 45344_AB00189S
|
|
|
1955 AATGAAAATAAgtacgtcac
|
|
|
1956 > 45344_AB00189S
|
|
|
1957 AGATTACACAGgtaatgagc
|
|
|
1958 > 45344_AB00189S
|
|
|
1959 AAGACCAGCAGgtaatgcat
|
|
|
1960 > 45345_AB002059
|
|
|
1961 TATGTGGTAGGgtaagagag
|
|
|
1962 > 45345_AB002059
|
|
|
1963 AGCCACCTCAGgtgggggcc
|
|
|
1964 > 45345_AB002059
|
|
|
1965 GATGCCCAGAGgtgagttta
|
|
|
1966 > 45345_AB002059
|
|
|
1967 ACACAGCCACGgtaactgtg
|
|
|
1968 > 45345_AB002059
|
|
|
1969 GTTGTGCCCTCgtaagtgtc
|
|
|
1970 > 45345_AB002059
|
|
|
1971 AACTTCTCTAAgtaagcaga
|
|
|
1972 > 45345_AB002059
|
|
|
1973 TGGCGTTGCTGgtgggtccc" >
|
|
|
1974 </form>-->
|
|
|
1975
|
|
|
1976
|
|
|
1977 <!--
|
|
|
1978 <form method="post" action="create.cgi">
|
|
|
1979 <input type="submit" name="cmd_edit" value="Edit Logo" >
|
|
|
1980 Intron-Exon (Acceptor) Sites
|
|
|
1981 <input type="hidden" name="logo_title" value="intron | exon" >
|
|
|
1982 <input type="hidden" name="first_index" value="-21" >
|
|
|
1983 <input type="hidden" name="logo_start" value="-20" >
|
|
|
1984 <input type="hidden" name="logo_end" value="3" >
|
|
|
1985 <input type="hidden" name="show_xaxis" value="true" >
|
|
|
1986 <input type="hidden" name="show_yaxis" value="true" >
|
|
|
1987 <input type="hidden" name="show_errorbars" value="true" >
|
|
|
1988 <input type="hidden" name="show_fineprint" value="true" >
|
|
|
1989 <input type="hidden" name="scale_width" value="true" >
|
|
|
1990 <input type="hidden" name="sequences" value="
|
|
|
1991 > 19082_AF115399
|
|
|
1992 ttctctgaaatatgaatttagACTGGTACTTATCATGGAG
|
|
|
1993 > 45328_AB000381
|
|
|
1994 gcctgctttctcccctctcagGGACTTACAGTTTGAGATG
|
|
|
1995 > 45328_AB000381
|
|
|
1996 cattgctgcttctttttttagGCATAAATTCTCGTGAACT
|
|
|
1997 > 45330_AB001517
|
|
|
1998 aacttcctgtgtgttttgcagACAGCTGGATAGAAAACGA
|
|
|
1999 > 45331_AB001517
|
|
|
2000 acaattttgttttcttcacagTTTTCAAATTTGCTGGGTA
|
|
|
2001 > 45331_AB001517
|
|
|
2002 tgtggtttttgtctttatcagCAACAAATCTGACACGCTG
|
|
|
2003 > 45331_AB001517
|
|
|
2004 gtgacctctggcgtcctgcagGGGGCGATGCGCTGCTGGT
|
|
|
2005 > 45331_AB001517
|
|
|
2006 atgtccgcgttccttccatagGAAGTTTGTTGTCACAAAG
|
|
|
2007 > 45331_AB001517
|
|
|
2008 tgccatctccctcttttccagGTGCTTTGTGGTTGGGAGC
|
|
|
2009 > 45331_AB001517
|
|
|
2010 accctgtgcttccccttgcagCTGTACTCACTCAGCCAGG
|
|
|
2011 > 45331_AB001517
|
|
|
2012 tcttctctctcgtcaattcagGTACTTCTTCAATAAAGAA
|
|
|
2013 > 45331_AB001517
|
|
|
2014 ttacaggcccgttctctgcagCATTTCAGATCAGAGCATC
|
|
|
2015 > 45331_AB001517
|
|
|
2016 cagcttcccccgtgtgcacagGCCTGGGCCAGCTGCTGGT
|
|
|
2017 > 45331_AB001517
|
|
|
2018 gcccctcctgtcctgcctcagGTCAAGGTGTGGAACACCC
|
|
|
2019 > 45331_AB001517
|
|
|
2020 gaccttgcctcttctctgcagGTACCGAAACTTCCGCACC
|
|
|
2021 > 45331_AB001517
|
|
|
2022 cgcctccttgctctacggtagGTTTTGTCTGGACACGAAG
|
|
|
2023 > 45331_AB001517
|
|
|
2024 ttactttgcatctctgtttagCTCTGGCTGTGACTTTTCG
|
|
|
2025 > 45331_AB001517
|
|
|
2026 ccatgtctcctctccacccagGGCCTTCACCGCCCTGTGC
|
|
|
2027 > 45331_AB001517
|
|
|
2028 ccactgcttttgctgttctagGAATTTTTGAACCGAAGAA
|
|
|
2029 > 45331_AB001517
|
|
|
2030 taacggttcttttttccccagGTGACATGAGTTCTCGGCA
|
|
|
2031 > 45331_AB001517
|
|
|
2032 aagcactgcttaatttcccagGGCGCTGCTGGGCGGCCAC
|
|
|
2033 > 45331_AB001517
|
|
|
2034 tgattttttctccttttgcagTTGAAGTGGTCACCTCCTC
|
|
|
2035 > 45331_AB001517
|
|
|
2036 cttagggagtctccctttcagAGCCGGGACGCTGCTGCCT
|
|
|
2037 > 45331_AB001517
|
|
|
2038 catcccctgtgtgattgacagCTGTAGCTGGAACCACTAT
|
|
|
2039 > 45332_AB001517
|
|
|
2040 cagctcccgctcctctcgcagGTGCTGTCTGGATGCGGAG
|
|
|
2041 > 45332_AB001517
|
|
|
2042 ctctggttttcccccgtgcagGATCCTGGTGCACCTGAGC
|
|
|
2043 > 45332_AB001517
|
|
|
2044 ttgccctgtgctctttcccagGAATGTTTTGACCGAGTCT
|
|
|
2045 > 45332_AB001517
|
|
|
2046 aggccttttgtctcccggtagGAGCACGTTTGCCGTGGAC
|
|
|
2047 > 45332_AB001517
|
|
|
2048 cgtgttcttttcgcctttcagCTTGTGCTGCATTGCACCT
|
|
|
2049 > 45333_AB001517
|
|
|
2050 cagctcccgctcctctcgcagGTGCTGTCTGGATGCGGAG
|
|
|
2051 > 45333_AB001517
|
|
|
2052 ctctggttttcccccgtgcagGATCCTGGTGCACCTGAGC
|
|
|
2053 > 45333_AB001517
|
|
|
2054 ttgccctgtgctctttcccagGAATGTTTTGACCGAGTCT
|
|
|
2055 > 45333_AB001517
|
|
|
2056 cgtgttcttttcgcctttcagCTTGTGCTGCATTGCACCT
|
|
|
2057 > 45334_AB001523
|
|
|
2058 atttctttcttcccttcatagGTGCTGGAGATCAGAATTT
|
|
|
2059 > 45334_AB001523
|
|
|
2060 acttcaaacaattgtttacagGTCCTATGGCCGGGCTCCG
|
|
|
2061 > 45334_AB001523
|
|
|
2062 cagtgacttgtttgtttttagGATACCGAAGTGTATAAAG
|
|
|
2063 > 45334_AB001523
|
|
|
2064 agtctgttcatgtctttgcagGTGTGTTGTGCTCTCCGAC
|
|
|
2065 > 45334_AB001523
|
|
|
2066 aaacgtatcttgggcgaatagGAGGAGCTTGCCTTTGTTT
|
|
|
2067 > 45334_AB001523
|
|
|
2068 tcatgatgtgtgtttgtttagATGGTGCCAACTGGCTGAC
|
|
|
2069 > 45334_AB001523
|
|
|
2070 ttcgcatttgcacccccacagGTCTCTGTCCCACCTGGTG
|
|
|
2071 > 45334_AB001523
|
|
|
2072 attgtggatttatcttaacagTTAAAGTCCTTGGGCTATC
|
|
|
2073 > 45334_AB001523
|
|
|
2074 tctcgtttctttctgtttaagCCAACACAGCTCAGAGTCC
|
|
|
2075 > 45334_AB001523
|
|
|
2076 tgtgtttttacttccccacagGATTTGTCCCATGCCACCA
|
|
|
2077 > 45334_AB001523
|
|
|
2078 actgtttgttgactttgcaagGAGGAAAAAGGCTCCACAA
|
|
|
2079 > 45334_AB001523
|
|
|
2080 ctccttacctctccgctccagCTACCTGCAGACCAGCAGC
|
|
|
2081 > 45334_AB001523
|
|
|
2082 tacgataatgtctatttacagGTCATAAGATAGTGCTACC
|
|
|
2083 > 45334_AB001523
|
|
|
2084 tgcctgattctttgactctagGCCAAGGAACCTGGAACGT
|
|
|
2085 > 45334_AB001523
|
|
|
2086 ccacgatctcttttcctttagATAGCCTTCTGGCAGGCAT
|
|
|
2087 > 45334_AB001523
|
|
|
2088 gactttttctgtccttcgtagAACAGTCTTCTGAGGCCGC
|
|
|
2089 > 45334_AB001523
|
|
|
2090 gtctttgtgcttcctcctcagGTGTCGATTGACTGCCCGT
|
|
|
2091 > 45334_AB001523
|
|
|
2092 ctttttgtttttccactttagGAAATATGTTCAAGTTTGT
|
|
|
2093 > 45334_AB001523
|
|
|
2094 gacccccaactctctttccagCCCATCTACAGCAAGCAGT
|
|
|
2095 > 45334_AB001523
|
|
|
2096 ttctctccctttcctgcccagACATTATACAACGTGAAGG
|
|
|
2097 > 45334_AB001523
|
|
|
2098 catcgcttcctctcgtttcagTTGTCGACAACAGTAGCAA
|
|
|
2099 > 45334_AB001523
|
|
|
2100 aacttcctgtgtgttttgcagACAGCTGGATAGAAAACGA
|
|
|
2101 > 45335_AB001523
|
|
|
2102 acaattttgttttcttcacagTTTTCAAATTTGCTGGGTA
|
|
|
2103 > 45337_AB00189S
|
|
|
2104 ttgtgtctttcgtgcttacagCATTGTGGCGACAAGAACA
|
|
|
2105 > 45337_AB00189S
|
|
|
2106 caccacgattccatttcttagGATTCCTACGCCAGCTACG
|
|
|
2107 > 45337_AB00189S
|
|
|
2108 tggttttttcctttgtttcagACACGGCACTCGTTGTGCG
|
|
|
2109 > 45338_AB00189S
|
|
|
2110 ttgtgtctttcgtgcttacagCATTGTGGCGACAAGAACA
|
|
|
2111 > 45338_AB00189S
|
|
|
2112 caccacgattccatttcttagGATTCCTACGCCAGCTACG
|
|
|
2113 > 45338_AB00189S
|
|
|
2114 tggttttttcctttgtttcagACACGGCACTCGTTGTGCG
|
|
|
2115 > 45338_AB00189S
|
|
|
2116 aatgcattctttacccattagGTGATCTTGAGACTCCTGT
|
|
|
2117 > 45339_AB00189S
|
|
|
2118 ttgtgtctttcgtgcttacagCATTGTGGCGACAAGAACA
|
|
|
2119 > 45339_AB00189S
|
|
|
2120 caccacgattccatttcttagGATTCCTACGCCAGCTACG
|
|
|
2121 > 45339_AB00189S
|
|
|
2122 tggttttttcctttgtttcagACACGGCACTCGTTGTGCG
|
|
|
2123 > 45339_AB00189S
|
|
|
2124 aatgcattctttacccattagGTGATCTTGAGACTCCTGT
|
|
|
2125 > 45340_AB00189S
|
|
|
2126 ttgtgtctttcgtgcttacagCATTGTGGCGACAAGAACA
|
|
|
2127 > 45340_AB00189S
|
|
|
2128 caccacgattccatttcttagGATTCCTACGCCAGCTACG
|
|
|
2129 > 45340_AB00189S
|
|
|
2130 tggttttttcctttgtttcagACACGGCACTCGTTGTGCG
|
|
|
2131 > 45341_AB00189S
|
|
|
2132 ttgtgtctttcgtgcttacagCATTGTGGCGACAAGAACA
|
|
|
2133 > 45341_AB00189S
|
|
|
2134 caccacgattccatttcttagGATTCCTACGCCAGCTACG
|
|
|
2135 > 45341_AB00189S
|
|
|
2136 tggttttttcctttgtttcagACACGGCACTCGTTGTGCG
|
|
|
2137 > 45341_AB00189S
|
|
|
2138 ctcctgcctttgctcctacagGAAGTGCGTGAGTGTGTGC
|
|
|
2139 > 45342_AB00189S
|
|
|
2140 ttgtgtctttcgtgcttacagCATTGTGGCGACAAGAACA
|
|
|
2141 > 45342_AB00189S
|
|
|
2142 caccacgattccatttcttagGATTCCTACGCCAGCTACG
|
|
|
2143 > 45342_AB00189S
|
|
|
2144 tggttttttcctttgtttcagACACGGCACTCGTTGTGCG
|
|
|
2145 > 45342_AB00189S
|
|
|
2146 -ggcaatttgcactcacacagCTCAATCCACCCCAGGCTC
|
|
|
2147 > 45342_AB00189S
|
|
|
2148 ctcctgcctttgctcctacagGAAGTGCGTGAGTGTGTGC
|
|
|
2149 > 45342_AB00189S
|
|
|
2150 aggaacggtatcttcccacagGTGTGACGAGAACTGCTTG
|
|
|
2151 > 45342_AB00189S
|
|
|
2152 tttcctgatgcggggccccagCTGACGAGACATTCTGCGA
|
|
|
2153 > 45343_AB00189S
|
|
|
2154 ttgtgtctttcgtgcttacagCATTGTGGCGACAAGAACA
|
|
|
2155 > 45343_AB00189S
|
|
|
2156 caccacgattccatttcttagGATTCCTACGCCAGCTACG
|
|
|
2157 > 45343_AB00189S
|
|
|
2158 tggttttttcctttgtttcagACACGGCACTCGTTGTGCG
|
|
|
2159 > 45343_AB00189S
|
|
|
2160 ctcctgcctttgctcctacagGAAGTGCGTGAGTGTGTGC
|
|
|
2161 > 45343_AB00189S
|
|
|
2162 aggaacggtatcttcccacagGTGTGACGAGAACTGCTTG
|
|
|
2163 > 45343_AB00189S
|
|
|
2164 tttcctgatgcggggccccagCTGACGAGACATTCTGCGA
|
|
|
2165 > 45344_AB00189S
|
|
|
2166 ttgtgtctttcgtgcttacagCATTGTGGCGACAAGAACA
|
|
|
2167 > 45344_AB00189S
|
|
|
2168 caccacgattccatttcttagGATTCCTACGCCAGCTACG
|
|
|
2169 > 45344_AB00189S
|
|
|
2170 tggttttttcctttgtttcagACACGGCACTCGTTGTGCG
|
|
|
2171 > 45344_AB00189S
|
|
|
2172 -ggcaatttgcactcacacagCTCAATCCACCCCAGGCTC
|
|
|
2173 > 45344_AB00189S
|
|
|
2174 ctcctgcctttgctcctacagGAAGTGCGTGAGTGTGTGC
|
|
|
2175 > 45345_AB002059
|
|
|
2176 tgcccgacttctcctccccagGTGGGCGCTCCTCGCCAAA
|
|
|
2177 > 45345_AB002059
|
|
|
2178 accttgagacttgcctcctagGGAGAGAACGTGTTCTTCT
|
|
|
2179 > 45345_AB002059
|
|
|
2180 ctgctctctctcccacctcagCACCCGTCCGTCCCACTGG
|
|
|
2181 > 45345_AB002059
|
|
|
2182 agttcatcttttgttttctagGTGTAAAAACAGGCCAGTG
|
|
|
2183 > 45345_AB002059
|
|
|
2184 tcacctcccttccacctgcagGAGGCCCCTGCTGGCCCAG
|
|
|
2185 > 45345_AB002059
|
|
|
2186 gacctttcccactcctcccagGTCCAATGCCTTGGAGACC
|
|
|
2187 > 45345_AB002059
|
|
|
2188 aaagctatgtgctatgtgcagGGTGGCTCTGTAGGCATCA
|
|
|
2189 > 45345_AB002059
|
|
|
2190 agccttctttcctgcccacagGACAGCCACTCACTGGTGG
|
|
|
2191 " >
|
|
|
2192 </form>-->-->
|
|
|
2193
|
|
|
2194 </td></tr>
|
|
|
2195
|
|
|
2196
|
|
|
2197
|
|
|
2198
|
|
|
2199
|
|
|
2200 </table>
|
|
|
2201
|
|
|
2202 <script type="text/javascript">
|
|
|
2203 var gaJsHost = (("https:" == document.location.protocol) ? "https://ssl." : "http://www.");
|
|
|
2204 document.write(unescape("%3Cscript src='" + gaJsHost + "google-analytics.com/ga.js' type='text/javascript'%3E%3C/script%3E"));
|
|
|
2205 </script>
|
|
|
2206 <script type="text/javascript">
|
|
|
2207 var pageTracker = _gat._getTracker("UA-5951066-1");
|
|
|
2208 pageTracker._trackPageview();
|
|
|
2209 </script>
|
|
|
2210 </body></html>
|
