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1 #!/usr/bin/env python
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2
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3 import sys
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4
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5 from distutils.core import setup
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6 from distutils.core import Extension
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7 from distutils.command.build import build
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8 from distutils.command.install_data import install_data
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9
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10 # Supress warning that distutils generates for the install_requires option
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11 import warnings
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12 warnings.simplefilter('ignore', UserWarning, lineno =236)
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13
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14 # check dependancies
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15 if not hasattr(sys, 'version_info') or sys.version_info < (2,3,0,'final'):
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16 raise SystemExit, \
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17 "Dependancy error: CodonLogo requires Python 2.3 or later."
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18
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19
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20 from weblogolib import __version__
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21
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22 def main() :
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23 long_description = open("README.txt").read()
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24
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25
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26 setup(
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27 name = "codonlogo",
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28 version = __version__,
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29 description = "CodonLogo: WebLogo3 messed around with",
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30 long_description = long_description,
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31 maintainer = "David Murphy",
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32 maintainer_email = "Murphy.David@gmail.com",
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33 classifiers =[
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34 'Development Status :: Alpha',
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35 'Intended Audience :: Science/Research',
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36 'License :: OSI Approved :: BSD License',
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37 'Topic :: Scientific/Engineering :: Bio-Informatics',
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38 'Programming Language :: Python',
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39 'Natural Language :: English',
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40 'Operating System :: OS Independent',
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41 'Topic :: Software Development :: Libraries',
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42 'Topic :: Software Development :: Libraries :: Python Modules',
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43 ],
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44
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45 scripts = [ 'codonlogo', ],
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46 packages = [ 'weblogolib',],
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47 data_files = ['weblogolib/htdocs/*.*','weblogolib/template.eps'],
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48 install_requires=['numpy', 'corebio'],
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49
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50 cmdclass= {"install_data" : _install_data},
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51 )
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52
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53
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54 # Python 2.3 compatability
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55 # Rework the install_data command to act like the package_data distutils
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56 # command included with python 2.4.
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57 # Adapted from biopython, which was adapted from mxtexttools
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58 class _install_data(install_data):
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59 def finalize_options(self):
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60 if self.install_dir is None:
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61 installobj = self.distribution.get_command_obj('install')
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62 # Use install_lib rather than install_platlib because we are
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63 # currently a pure python distribution (No c extensions.)
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64 self.install_dir = installobj.install_lib
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65 #print installobj.install_lib
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66 install_data.finalize_options(self)
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67
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68 def run (self):
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69 import glob
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70 import os
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71 if not self.dry_run:
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72 self.mkpath(self.install_dir)
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73 data_files = self.get_inputs()
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74 for entry in data_files:
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75 if type(entry) is not type(""):
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76 raise ValueError("data_files must be strings")
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77 # Unix- to platform-convention conversion
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78 entry = os.sep.join(entry.split("/"))
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79 filenames = glob.glob(entry)
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80 for filename in filenames:
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81 dst = os.path.join(self.install_dir, filename)
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82 dstdir = os.path.split(dst)[0]
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83 if not self.dry_run:
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84 self.mkpath(dstdir)
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85 outfile = self.copy_file(filename, dst)[0]
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86 else:
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87 outfile = dst
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88 self.outfiles.append(outfile)
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89
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90 if __name__ == '__main__' :
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91 main()
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92
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93 |
