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annotate corebio/data/blosum62.mat @ 15:981eb8c3a756 default tip

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author davidmurphy
date Sat, 31 Mar 2012 16:07:07 -0400
parents c55bdc2fb9fa
children
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c55bdc2fb9fa Uploaded
davidmurphy
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1 # Matrix made by matblas from blosum62_3.iij
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2 # * column uses minimum score
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3 # BLOSUM Clustered Scoring Matrix in 1/3 Bit Units
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4 # Blocks Database = /data/blocks_5.0/blocks.dat
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5 # Cluster Percentage: >= 62
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6 # Entropy = 0.6979, Expected = -0.5209
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7 A R N D C Q E G H I L K M F P S T W Y V B Z X *
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8 A 6 -2 -2 -3 -1 -1 -1 0 -2 -2 -2 -1 -1 -3 -1 2 0 -4 -3 0 -2 -1 -1 -6
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9 R -2 8 -1 -2 -5 1 0 -3 0 -4 -3 3 -2 -4 -3 -1 -2 -4 -3 -4 -2 0 -2 -6
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10 N -2 -1 8 2 -4 0 0 -1 1 -5 -5 0 -3 -4 -3 1 0 -6 -3 -4 5 0 -2 -6
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11 D -3 -2 2 9 -5 0 2 -2 -2 -5 -5 -1 -5 -5 -2 0 -2 -6 -5 -5 6 1 -2 -6
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12 C -1 -5 -4 -5 13 -4 -5 -4 -4 -2 -2 -5 -2 -4 -4 -1 -1 -3 -4 -1 -5 -5 -3 -6
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13 Q -1 1 0 0 -4 8 3 -3 1 -4 -3 2 -1 -5 -2 0 -1 -3 -2 -3 0 5 -1 -6
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14 E -1 0 0 2 -5 3 7 -3 0 -5 -4 1 -3 -5 -2 0 -1 -4 -3 -4 1 6 -1 -6
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15 G 0 -3 -1 -2 -4 -3 -3 8 -3 -6 -5 -2 -4 -5 -3 0 -2 -4 -5 -5 -1 -3 -2 -6
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16 H -2 0 1 -2 -4 1 0 -3 11 -5 -4 -1 -2 -2 -3 -1 -3 -4 3 -5 -1 0 -2 -6
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17 I -2 -4 -5 -5 -2 -4 -5 -6 -5 6 2 -4 2 0 -4 -4 -1 -4 -2 4 -5 -5 -2 -6
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18 L -2 -3 -5 -5 -2 -3 -4 -5 -4 2 6 -4 3 1 -4 -4 -2 -2 -2 1 -5 -4 -2 -6
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19 K -1 3 0 -1 -5 2 1 -2 -1 -4 -4 7 -2 -5 -2 0 -1 -4 -3 -3 -1 1 -1 -6
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20 M -1 -2 -3 -5 -2 -1 -3 -4 -2 2 3 -2 8 0 -4 -2 -1 -2 -1 1 -4 -2 -1 -6
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21 F -3 -4 -4 -5 -4 -5 -5 -5 -2 0 1 -5 0 9 -5 -4 -3 1 4 -1 -5 -5 -2 -6
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22 P -1 -3 -3 -2 -4 -2 -2 -3 -3 -4 -4 -2 -4 -5 11 -1 -2 -5 -4 -4 -3 -2 -2 -6
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23 S 2 -1 1 0 -1 0 0 0 -1 -4 -4 0 -2 -4 -1 6 2 -4 -3 -2 0 0 -1 -6
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24 T 0 -2 0 -2 -1 -1 -1 -2 -3 -1 -2 -1 -1 -3 -2 2 7 -4 -2 0 -1 -1 -1 -6
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25 W -4 -4 -6 -6 -3 -3 -4 -4 -4 -4 -2 -4 -2 1 -5 -4 -4 16 3 -4 -6 -4 -3 -6
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26 Y -3 -3 -3 -5 -4 -2 -3 -5 3 -2 -2 -3 -1 4 -4 -3 -2 3 10 -2 -4 -3 -2 -6
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27 V 0 -4 -4 -5 -1 -3 -4 -5 -5 4 1 -3 1 -1 -4 -2 0 -4 -2 6 -5 -4 -1 -6
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28 B -2 -2 5 6 -5 0 1 -1 -1 -5 -5 -1 -4 -5 -3 0 -1 -6 -4 -5 5 0 -2 -6
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29 Z -1 0 0 1 -5 5 6 -3 0 -5 -4 1 -2 -5 -2 0 -1 -4 -3 -4 0 5 -1 -6
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30 X -1 -2 -2 -2 -3 -1 -1 -2 -2 -2 -2 -1 -1 -2 -2 -1 -1 -3 -2 -1 -2 -1 -2 -6
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31 * -6 -6 -6 -6 -6 -6 -6 -6 -6 -6 -6 -6 -6 -6 -6 -6 -6 -6 -6 -6 -6 -6 -6 1