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author davidmurphy
date Fri, 13 Jan 2012 07:18:19 -0500
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1 ===============================================================================
2
3 CoreBio Weblogo and Codonlogo : Copyrights and Licenses
4
5 ===============================================================================
6
7 This package is distributed under the new BSD Open Source License. Much
8 of the code was written by Gavin E. Crooks, Gary Hon, Steven Brenner, John-Marc
9 Chandonia, Liana Lareau, David Ding, Clare Gollnick,David Murphy and other contributers.
10
11
12
13 Copyright Notice
14 ================
15 Copyright (c) 2006, The Regents of the University of California, through
16 Lawrence Berkeley National Laboratory (subject to receipt of any required
17 approvals from the U.S. Dept. of Energy). All rights reserved.
18
19 Parts of this software package are covered by the individual copyrights of the
20 contributers. Please refer to individual source code files for further details.
21
22 NOTICE. This software was developed under funding from the U.S. Department of
23 Energy. As such, the U.S. Government has been granted for itself and others
24 acting on its behalf a paid-up, nonexclusive, irrevocable, worldwide license in
25 the Software to reproduce, prepare derivative works, and perform publicly and
26 display publicly. Beginning five (5) years after the date permission to assert
27 copyright is obtained from the U.S. Department of Energy, and subject to any
28 subsequent five (5) year renewals, the U.S. Government is granted for itself
29 and others acting on its behalf a paid-up, nonexclusive, irrevocable, worldwide
30 license in the Software to reproduce, prepare derivative works, distribute
31 copies to the public, perform publicly and display publicly, and to permit
32 others to do so.
33
34
35 The new BSD Open Source License
36 ===============================
37
38 # Copyright (c) 2006, The Regents of the University of California, through
39 # Lawrence Berkeley National Laboratory (subject to receipt of any required
40 # approvals from the U.S. Dept. of Energy). All rights reserved.
41
42 # This software is distributed under the new BSD Open Source License.
43 # <http://www.opensource.org/licenses/bsd-license.html>
44 #
45 # Redistribution and use in source and binary forms, with or without
46 # modification, are permitted provided that the following conditions are met:
47 #
48 # (1) Redistributions of source code must retain the above copyright notice,
49 # this list of conditions and the following disclaimer.
50 #
51 # (2) Redistributions in binary form must reproduce the above copyright
52 # notice, this list of conditions and the following disclaimer in the
53 # documentation and or other materials provided with the distribution.
54 #
55 # (3) Neither the name of the University of California, Lawrence Berkeley
56 # National Laboratory, U.S. Dept. of Energy nor the names of its contributors
57 # may be used to endorse or promote products derived from this software
58 # without specific prior written permission.
59 #
60 # THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS"
61 # AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE
62 # IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE
63 # ARE DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT OWNER OR CONTRIBUTORS BE
64 # LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR
65 # CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF
66 # SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS
67 # INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN
68 # CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE)
69 # ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE
70 # POSSIBILITY OF SUCH DAMAGE.
71
72
73
74 The MIT Open Source License
75 ===========================
76
77 Parts of the code are covered by the MIT license, which is equivalent to the
78 BSD license apart from the third, no promotion clause. Please refer to
79 individual source code files for further details.
80
81 # Copyright (c) 2003-2004 The Regents of the University of California.
82 # Copyright (c) 2005 Gavin E. Crooks
83 # Copyright (c) 2006 David Ding
84 # Copyright (c) 2006 Clare Gollnick
85 # Copyright (c) 2002-2005 ActiveState Corp.
86
87 # This software is distributed under the MIT Open Source License.
88 # <http://www.opensource.org/licenses/mit-license.html>
89 #
90 # Permission is hereby granted, free of charge, to any person obtaining a
91 # copy of this software and associated documentation files (the "Software"),
92 # to deal in the Software without restriction, including without limitation
93 # the rights to use, copy, modify, merge, publish, distribute, sublicense,
94 # and/or sell copies of the Software, and to permit persons to whom the
95 # Software is furnished to do so, subject to the following conditions:
96 #
97 # The above copyright notice and this permission notice shall be included
98 # in all copies or substantial portions of the Software.
99 #
100 # THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR
101 # IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY,
102 # FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE
103 # AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER
104 # LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING
105 # FROM, OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS
106 # IN THE SOFTWARE.
107
108
109
110 The Biopython License (biopython.org)
111 =====================================
112 Parts of the code are covered by the biopython license, which is functionally
113 equivalent to the BSD license.
114
115
116 # Biopython License Agreement
117 #
118 # Permission to use, copy, modify, and distribute this software and its
119 # documentation with or without modifications and for any purpose and
120 # without fee is hereby granted, provided that any copyright notices
121 # appear in all copies and that both those copyright notices and this
122 # permission notice appear in supporting documentation, and that the
123 # names of the contributors or copyright holders not be used in
124 # advertising or publicity pertaining to distribution of the software
125 # without specific prior permission.
126
127 # THE CONTRIBUTORS AND COPYRIGHT HOLDERS OF THIS SOFTWARE DISCLAIM ALL
128 # WARRANTIES WITH REGARD TO THIS SOFTWARE, INCLUDING ALL IMPLIED
129 # WARRANTIES OF MERCHANTABILITY AND FITNESS, IN NO EVENT SHALL THE
130 # CONTRIBUTORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY SPECIAL, INDIRECT
131 # OR CONSEQUENTIAL DAMAGES OR ANY DAMAGES WHATSOEVER RESULTING FROM LOSS
132 # OF USE, DATA OR PROFITS, WHETHER IN AN ACTION OF CONTRACT, NEGLIGENCE
133 # OR OTHER TORTIOUS ACTION, ARISING OUT OF OR IN CONNECTION WITH THE USE
134 # OR PERFORMANCE OF THIS SOFTWARE.
135
136