Mercurial > repos > davidmurphy > codonlogo
comparison PKG-INFO @ 7:8d676bbd1f2d
Uploaded
| author | davidmurphy |
|---|---|
| date | Mon, 16 Jan 2012 07:03:36 -0500 |
| parents | c55bdc2fb9fa |
| children |
comparison
equal
deleted
inserted
replaced
| 6:4a4aca3d57c9 | 7:8d676bbd1f2d |
|---|---|
| 1 Metadata-Version: 1.0 | |
| 2 Name: weblogo | |
| 3 Version: 3.0 | |
| 4 Summary: WebLogo3 : Sequence Logos Redrawn | |
| 5 Home-page: http://code.google.com/p/weblogo/ | |
| 6 Author: Gavin Crooks | |
| 7 Author-email: gec@threeplusone.com | |
| 8 License: UNKNOWN | |
| 9 Download-URL: http://weblogo.googlecode.com/svn/dist/weblogo-3.0.tar.gz | |
| 10 Description: | |
| 11 WebLogo (http://code.google.com/p/weblogo/) is a tool for creating sequence | |
| 12 logos from biological sequence alignments. It can be run on the command line, | |
| 13 as a standalone webserver, as a CGI webapp, or as a python library. | |
| 14 | |
| 15 The main WebLogo webserver is located at http://bespoke.lbl.gov/weblogo/ | |
| 16 | |
| 17 Please consult the manual for installation instructions and more information: | |
| 18 (Also located in the weblogolib/htdocs subdirectory.) | |
| 19 | |
| 20 http://bespoke.lbl.gov/weblogo/manual.html | |
| 21 | |
| 22 For help on the command line interface run | |
| 23 ./weblogo --help | |
| 24 | |
| 25 To build a simple logo run | |
| 26 ./weblogo < cap.fa > logo0.eps | |
| 27 | |
| 28 To run as a standalone webserver at localhost:8080 | |
| 29 ./weblogo --server | |
| 30 | |
| 31 To create a logo in python code: | |
| 32 >>> from weblogolib import * | |
| 33 >>> fin = open('cap.fa') | |
| 34 >>> seqs = read_seq_data(fin) | |
| 35 >>> data = LogoData.from_seqs(seqs) | |
| 36 >>> options = LogoOptions() | |
| 37 >>> options.title = "A Logo Title" | |
| 38 >>> format = LogoFormat(data, options) | |
| 39 >>> fout = open('cap.eps', 'w') | |
| 40 >>> eps_formatter( data, format, fout) | |
| 41 | |
| 42 | |
| 43 -- Distribution and Modification -- | |
| 44 This package is distributed under the new BSD Open Source License. | |
| 45 Please see the LICENSE.txt file for details on copyright and licensing. | |
| 46 The WebLogo source code can be downloaded from | |
| 47 http://code.google.com/p/weblogo/ | |
| 48 | |
| 49 WebLogo requires Python 2.3, 2.4 or 2.5, the corebio python toolkit for | |
| 50 computational biology (http://code.google.com/p/corebio), and the python | |
| 51 array package 'numpy' (http://www.scipy.org/Download) | |
| 52 | |
| 53 Platform: UNKNOWN | |
| 54 Classifier: Development Status :: 5 - Production/Stable | |
| 55 Classifier: Intended Audience :: Science/Research | |
| 56 Classifier: License :: OSI Approved :: BSD License | |
| 57 Classifier: Topic :: Scientific/Engineering :: Bio-Informatics | |
| 58 Classifier: Programming Language :: Python | |
| 59 Classifier: Natural Language :: English | |
| 60 Classifier: Operating System :: OS Independent | |
| 61 Classifier: Topic :: Software Development :: Libraries | |
| 62 Classifier: Topic :: Software Development :: Libraries :: Python Modules |