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date Thu, 27 Oct 2011 12:09:09 -0400
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1 ===============================================================================
2
3 CoreBio and WebLogo : Copyrights and Licenses
4
5 ===============================================================================
6
7 This package is distributed under the new BSD Open Source License. Much
8 of the code was written by Gavin E. Crooks, Gary Hon, Steven Brenner, John-Marc
9 Chandonia, Liana Lareau, David Ding, Clare Gollnick,David Murphy and other contributers.
10
11
12 Copyright Notice
13 ================
14 Copyright (c) 2006, The Regents of the University of California, through
15 Lawrence Berkeley National Laboratory (subject to receipt of any required
16 approvals from the U.S. Dept. of Energy). All rights reserved.
17
18 Parts of this software package are covered by the individual copyrights of the
19 contributers. Please refer to individual source code files for further details.
20
21 NOTICE. This software was developed under funding from the U.S. Department of
22 Energy. As such, the U.S. Government has been granted for itself and others
23 acting on its behalf a paid-up, nonexclusive, irrevocable, worldwide license in
24 the Software to reproduce, prepare derivative works, and perform publicly and
25 display publicly. Beginning five (5) years after the date permission to assert
26 copyright is obtained from the U.S. Department of Energy, and subject to any
27 subsequent five (5) year renewals, the U.S. Government is granted for itself
28 and others acting on its behalf a paid-up, nonexclusive, irrevocable, worldwide
29 license in the Software to reproduce, prepare derivative works, distribute
30 copies to the public, perform publicly and display publicly, and to permit
31 others to do so.
32
33
34 The new BSD Open Source License
35 ===============================
36
37 # Copyright (c) 2006, The Regents of the University of California, through
38 # Lawrence Berkeley National Laboratory (subject to receipt of any required
39 # approvals from the U.S. Dept. of Energy). All rights reserved.
40
41 # This software is distributed under the new BSD Open Source License.
42 # <http://www.opensource.org/licenses/bsd-license.html>
43 #
44 # Redistribution and use in source and binary forms, with or without
45 # modification, are permitted provided that the following conditions are met:
46 #
47 # (1) Redistributions of source code must retain the above copyright notice,
48 # this list of conditions and the following disclaimer.
49 #
50 # (2) Redistributions in binary form must reproduce the above copyright
51 # notice, this list of conditions and the following disclaimer in the
52 # documentation and or other materials provided with the distribution.
53 #
54 # (3) Neither the name of the University of California, Lawrence Berkeley
55 # National Laboratory, U.S. Dept. of Energy nor the names of its contributors
56 # may be used to endorse or promote products derived from this software
57 # without specific prior written permission.
58 #
59 # THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS"
60 # AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE
61 # IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE
62 # ARE DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT OWNER OR CONTRIBUTORS BE
63 # LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR
64 # CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF
65 # SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS
66 # INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN
67 # CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE)
68 # ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE
69 # POSSIBILITY OF SUCH DAMAGE.
70
71
72
73 The MIT Open Source License
74 ===========================
75
76 Parts of the code are covered by the MIT license, which is equivalent to the
77 BSD license apart from the third, no promotion clause. Please refer to
78 individual source code files for further details.
79
80 # Copyright (c) 2003-2004 The Regents of the University of California.
81 # Copyright (c) 2005 Gavin E. Crooks
82 # Copyright (c) 2006 David Ding
83 # Copyright (c) 2006 Clare Gollnick
84 # Copyright (c) 2002-2005 ActiveState Corp.
85
86 # This software is distributed under the MIT Open Source License.
87 # <http://www.opensource.org/licenses/mit-license.html>
88 #
89 # Permission is hereby granted, free of charge, to any person obtaining a
90 # copy of this software and associated documentation files (the "Software"),
91 # to deal in the Software without restriction, including without limitation
92 # the rights to use, copy, modify, merge, publish, distribute, sublicense,
93 # and/or sell copies of the Software, and to permit persons to whom the
94 # Software is furnished to do so, subject to the following conditions:
95 #
96 # The above copyright notice and this permission notice shall be included
97 # in all copies or substantial portions of the Software.
98 #
99 # THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR
100 # IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY,
101 # FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE
102 # AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER
103 # LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING
104 # FROM, OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS
105 # IN THE SOFTWARE.
106
107
108
109 The Biopython License (biopython.org)
110 =====================================
111 Parts of the code are covered by the biopython license, which is functionally
112 equivalent to the BSD license.
113
114
115 # Biopython License Agreement
116 #
117 # Permission to use, copy, modify, and distribute this software and its
118 # documentation with or without modifications and for any purpose and
119 # without fee is hereby granted, provided that any copyright notices
120 # appear in all copies and that both those copyright notices and this
121 # permission notice appear in supporting documentation, and that the
122 # names of the contributors or copyright holders not be used in
123 # advertising or publicity pertaining to distribution of the software
124 # without specific prior permission.
125
126 # THE CONTRIBUTORS AND COPYRIGHT HOLDERS OF THIS SOFTWARE DISCLAIM ALL
127 # WARRANTIES WITH REGARD TO THIS SOFTWARE, INCLUDING ALL IMPLIED
128 # WARRANTIES OF MERCHANTABILITY AND FITNESS, IN NO EVENT SHALL THE
129 # CONTRIBUTORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY SPECIAL, INDIRECT
130 # OR CONSEQUENTIAL DAMAGES OR ANY DAMAGES WHATSOEVER RESULTING FROM LOSS
131 # OF USE, DATA OR PROFITS, WHETHER IN AN ACTION OF CONTRACT, NEGLIGENCE
132 # OR OTHER TORTIOUS ACTION, ARISING OUT OF OR IN CONNECTION WITH THE USE
133 # OR PERFORMANCE OF THIS SOFTWARE.
134
135