Mercurial > repos > davidmurphy > codonlogo
comparison README.txt @ 0:c55bdc2fb9fa
Uploaded
| author | davidmurphy |
|---|---|
| date | Thu, 27 Oct 2011 12:09:09 -0400 |
| parents | |
| children |
comparison
equal
deleted
inserted
replaced
| -1:000000000000 | 0:c55bdc2fb9fa |
|---|---|
| 1 | |
| 2 CodonLogo (http://recode.ucc.ie/CodonLogo) is a tool for creating sequence | |
| 3 logos from biological sequence alignments. It can be run on the command line, | |
| 4 as a standalone webserver or as a CGI webapp. | |
| 5 | |
| 6 | |
| 7 For help on the command line interface run | |
| 8 ./codonlogo --help | |
| 9 | |
| 10 To build a simple logo run | |
| 11 ./codonlogo < cap.fa > logo0.eps | |
| 12 | |
| 13 To run as a standalone webserver at localhost:8080 | |
| 14 ./codonlogo --server | |
| 15 | |
| 16 | |
| 17 -- Distribution and Modification -- | |
| 18 This package is distributed under the new BSD Open Source License. | |
| 19 Please see the LICENSE.txt file for details on copyright and licensing. | |
| 20 The CodonLogo source code can be downloaded from | |
| 21 http://recode.ucc.ie/CodonLogo | |
| 22 | |
| 23 CodonLogo requires Python 2.6 or 2.7, the corebio python toolkit for | |
| 24 computational biology (http://code.google.com/p/corebio), and the python | |
| 25 array package 'numpy' (http://www.scipy.org/Download) |