Mercurial > repos > davidmurphy > codonlogo

comparison setup.py @ 0:c55bdc2fb9fa

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author davidmurphy
date Thu, 27 Oct 2011 12:09:09 -0400
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-1:000000000000 0:c55bdc2fb9fa
1 #!/usr/bin/env python
2
3 import sys
4
5 from distutils.core import setup
6 from distutils.core import Extension
7 from distutils.command.build import build
8 from distutils.command.install_data import install_data
9
10 # Supress warning that distutils generates for the install_requires option
11 import warnings
12 warnings.simplefilter('ignore', UserWarning, lineno =236)
13
14 # check dependancies
15 if not hasattr(sys, 'version_info') or sys.version_info < (2,3,0,'final'):
16 raise SystemExit, \
17 "Dependancy error: CodonLogo requires Python 2.3 or later."
18
19
20 from weblogolib import __version__
21
22 def main() :
23 long_description = open("README.txt").read()
24
25
26 setup(
27 name = "codonlogo",
28 version = __version__,
29 description = "CodonLogo: WebLogo3 messed around with",
30 long_description = long_description,
31 maintainer = "David Murphy",
32 maintainer_email = "Murphy.David@gmail.com",
33 classifiers =[
34 'Development Status :: Alpha',
35 'Intended Audience :: Science/Research',
36 'License :: OSI Approved :: BSD License',
37 'Topic :: Scientific/Engineering :: Bio-Informatics',
38 'Programming Language :: Python',
39 'Natural Language :: English',
40 'Operating System :: OS Independent',
41 'Topic :: Software Development :: Libraries',
42 'Topic :: Software Development :: Libraries :: Python Modules',
43 ],
44
45 scripts = [ 'codonlogo', ],
46 packages = [ 'weblogolib',],
47 data_files = ['weblogolib/htdocs/*.*','weblogolib/template.eps'],
48 install_requires=['numpy', 'corebio'],
49
50 cmdclass= {"install_data" : _install_data},
51 )
52
53
54 # Python 2.3 compatability
55 # Rework the install_data command to act like the package_data distutils
56 # command included with python 2.4.
57 # Adapted from biopython, which was adapted from mxtexttools
58 class _install_data(install_data):
59 def finalize_options(self):
60 if self.install_dir is None:
61 installobj = self.distribution.get_command_obj('install')
62 # Use install_lib rather than install_platlib because we are
63 # currently a pure python distribution (No c extensions.)
64 self.install_dir = installobj.install_lib
65 #print installobj.install_lib
66 install_data.finalize_options(self)
67
68 def run (self):
69 import glob
70 import os
71 if not self.dry_run:
72 self.mkpath(self.install_dir)
73 data_files = self.get_inputs()
74 for entry in data_files:
75 if type(entry) is not type(""):
76 raise ValueError("data_files must be strings")
77 # Unix- to platform-convention conversion
78 entry = os.sep.join(entry.split("/"))
79 filenames = glob.glob(entry)
80 for filename in filenames:
81 dst = os.path.join(self.install_dir, filename)
82 dstdir = os.path.split(dst)[0]
83 if not self.dry_run:
84 self.mkpath(dstdir)
85 outfile = self.copy_file(filename, dst)[0]
86 else:
87 outfile = dst
88 self.outfiles.append(outfile)
89
90 if __name__ == '__main__' :
91 main()
92
93