Mercurial > repos > davidmurphy > codonlogo
diff corebio/seq_io/null_io.py @ 4:4d47ab2b7bcc
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author | davidmurphy |
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date | Fri, 13 Jan 2012 07:18:19 -0500 |
parents | c55bdc2fb9fa |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/corebio/seq_io/null_io.py Fri Jan 13 07:18:19 2012 -0500 @@ -0,0 +1,57 @@ +#!/usr/bin/env python + +# Copyright (c) 2005 Gavin E. Crooks <gec@threeplusone.com> +# +# This software is distributed under the MIT Open Source License. +# <http://www.opensource.org/licenses/mit-license.html> +# +# Permission is hereby granted, free of charge, to any person obtaining a +# copy of this software and associated documentation files (the "Software"), +# to deal in the Software without restriction, including without limitation +# the rights to use, copy, modify, merge, publish, distribute, sublicense, +# and/or sell copies of the Software, and to permit persons to whom the +# Software is furnished to do so, subject to the following conditions: +# +# The above copyright notice and this permission notice shall be included +# in all copies or substantial portions of the Software. +# +# THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR +# IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY, +# FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE +# AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER +# LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM, +# OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN +# THE SOFTWARE. +# + +"""Null sequence IO. Acts like /dev/null. Read returns empty sequences or sequence lists, writes do nothing.""" + + +from corebio.seq import Seq, SeqList + +names = () +extensions = () + +def read(fin, alphabet=None): + assert fin is not None # Do something with arguments to quite pychecker + if alphabet is not None : pass + return SeqList([]) + +def iterseq(fin, alphabet=None) : + assert fin is not None + if alphabet is not None : pass + yield Seq('') + return + +def write(fout, seqs): + assert fout is not None + assert seqs is not None + return + + +def writeseq(fout, seq): + assert fout is not None + assert seq is not None + return + + \ No newline at end of file