--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/test	Thu Oct 27 12:09:09 2011 -0400
@@ -0,0 +1,97 @@
+
+./codonlogo --version < baseline.txt > output.eps
+display output.eps
+./codonlogo --help < baseline.txt > output.eps
+display output.eps
+./codonlogo -f baseline.txt > output.eps
+display output.eps
+./codonlogo -o output.eps < baseline.txt 
+display output.eps
+./codonlogo -F  eps  < baseline.txt > output.eps
+display output.eps
+./codonlogo -F png < baseline.txt > output.png
+display output.png
+./codonlogo -F png_print  < baseline.txt > output.png
+display output.png
+./codonlogo -F pdf  < baseline.txt > output.pdf
+display output.pdf
+./codonlogo -F jpeg  < baseline.txt > output.eps
+display output.jpeg
+./codonlogo -F txt < baseline.txt > output.eps
+kate output.txt
+./codonlogo -m 1  < baseline.txt > output.eps
+display output.eps
+./codonlogo -m 4 < baseline.txt > output.eps
+display output.eps
+./codonlogo -T True < baseline.txt > output.eps
+display output.eps
+./codonlogo -T False < baseline.txt > output.eps
+display output.eps
+./codonlogo -U 'bits'  < baseline.txt > output.eps
+display output.eps
+./codonlogo -U 'nats' < baseline.txt > output.eps
+display output.eps
+./codonlogo -U 'digits' < baseline.txt > output.eps
+display output.eps
+./codonlogo -U 'kT' < baseline.txt > output.eps
+display output.eps
+./codonlogo -U 'kJ/mol' < baseline.txt > output.eps
+display output.eps
+./codonlogo -U 'kcal/mol' < baseline.txt > output.eps
+display output.eps
+./codonlogo -U 'probability'  < baseline.txt > output.eps
+display output.eps
+./codonlogo --weight 32 < baseline.txt > output.eps
+display output.eps
+./codonlogo -i 2 < baseline.txt > output.eps
+display output.eps
+./codonlogo -l 2 < baseline.txt > output.eps
+display output.eps
+./codonlogo -u 4 < baseline.txt > output.eps
+display output.eps
+./codonlogo -n 2 < baseline.txt > output.eps
+display output.eps
+./codonlogo -t "Testing" < baseline.txt > output.eps
+display output.eps
+./codonlogo --label "WHeeeeeee" < baseline.txt > output.eps
+display output.eps
+./codonlogo -X True < baseline.txt > output.eps
+display output.eps
+./codonlogo -X False < baseline.txt > output.eps
+display output.eps
+./codonlogo -x "Hello" < baseline.txt > output.eps
+display output.eps
+./codonlogo -S 7 < baseline.txt > output.eps
+display output.eps
+./codonlogo -Y True < baseline.txt > output.eps
+display output.eps
+./codonlogo -Y False < baseline.txt > output.eps
+display output.eps
+./codonlogo -y "World" < baseline.txt > output.eps
+display output.eps
+./codonlogo -E True < baseline.txt > output.eps
+display output.eps
+./codonlogo --fineprint "Testing" < baseline.txt > output.eps
+display output.eps
+./codonlogo --ticmarks 3 < baseline.txt > output.eps
+display output.eps
+./codonlogo --errorbars False < baseline.txt > output.eps
+display output.eps
+./codonlogo -W 40 < baseline.txt > output.eps
+display output.eps
+./codonlogo -H 200 < baseline.txt > output.eps
+display output.eps
+./codonlogo --box True < baseline.txt > output.eps
+display output.eps
+./codonlogo --box False < baseline.txt > output.eps
+display output.eps
+./codonlogo --resolution 1200 < baseline.txt > output.eps
+display output.eps
+./codonlogo --scale-width YES < baseline.txt > output.eps
+display output.eps
+./codonlogo --scale-width NO < baseline.txt > output.eps
+display output.eps
+./codonlogo --debug True < baseline.txt > output.eps
+display output.eps
+./codonlogo --debug False < baseline.txt > output.eps
+display output.eps