#!/usr/bin/env python




# -------------------------------- WebLogo --------------------------------

#  Copyright (c) 2003-2004 The Regents of the University of California.
#  Copyright (c) 2005 Gavin E. Crooks
#  Copyright (c) 2006, The Regents of the University of California, through 
#  Lawrence Berkeley National Laboratory (subject to receipt of any required
#  approvals from the U.S. Dept. of Energy).  All rights reserved.

#  This software is distributed under the new BSD Open Source License.
#  <http://www.opensource.org/licenses/bsd-license.html>
#
#  Redistribution and use in source and binary forms, with or without 
#  modification, are permitted provided that the following conditions are met: 
#
#  (1) Redistributions of source code must retain the above copyright notice, 
#  this list of conditions and the following disclaimer. 
#
#  (2) Redistributions in binary form must reproduce the above copyright 
#  notice, this list of conditions and the following disclaimer in the 
#  documentation and or other materials provided with the distribution. 
#
#  (3) Neither the name of the University of California, Lawrence Berkeley 
#  National Laboratory, U.S. Dept. of Energy nor the names of its contributors 
#  may be used to endorse or promote products derived from this software 
#  without specific prior written permission. 
#
#  THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS" 
#  AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE 
#  IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE 
#  ARE DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT OWNER OR CONTRIBUTORS BE 
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#  POSSIBILITY OF SUCH DAMAGE. 

""" WebLogo is a tool for creating sequence logos from biological sequence
alignments.  It can be run on the command line, as a standalone webserver, as a
CGI webapp, or as a python library.

For help on the command line interface run
    ./codonlogo --help

To build a simple logo run
    ./codonlogo  < cap.fa > logo0.eps
    
To run as a standalone webserver at localhost:8080 
    ./codonlogo --serve


"""
import weblogolib

# Standard python voodoo for CLI
if __name__ == "__main__":
    ## Code Profiling. Uncomment these lines
    #import hotshot, hotshot.stats
    #prof = hotshot.Profile("stones.prof")
    #prof.runcall(main)
    #prof.close()
    #stats = hotshot.stats.load("stones.prof")
    #stats.strip_dirs()
    #stats.sort_stats('cumulative', 'calls')
    #stats.print_stats(40)
    #sys.exit()

    weblogolib.main()