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Minor alterations to the galaxy interface with some better examples and error messages added.
author davidmurphy
date Mon, 30 Jan 2012 08:17:57 -0500
parents c55bdc2fb9fa
children
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<!DOCTYPE HTML PUBLIC "-//W3C//DTD HTML 4.01//EN"
    "http://www.w3.org/TR/html4/transitional.dtd">
 
<html>
<head>
<link rel="stylesheet" type="text/css" href="logo.css" >
<title>CodonLogo - Examples</title>
<meta name="author" content="Gavin E. Crooks" >
<meta name="author" content="Steven E. Brenner" >
<meta name="ID" content="$ID:" >

<style type="text/css">
img {
    display: block;
    margin-left: auto;
    margin-right: auto }

</style>
</head>

<body>

<table width="80%" border = '0' cellspacing='0' cellpadding='1' align="center">
<tr><td >
<h1> CodonLogo 1.0: Examples</h1>

</td><td align = "right"> 
    &middot; 
  <a href="./">about</a>&nbsp;&middot;
  <a href="create.cgi">create</a>&nbsp;&middot; 
  <a class="selected" href="examples.html">examples</a>&nbsp;&middot; 
  <a href="manual.html">manual</a>&nbsp;&middot; 
<br>
&nbsp;
</td></tr>


<tr><td colspan="2" class="discourse" >

<ul>
  <li> <a href="#CAP">CAP HTH motif</a> </li>
 <li>  <a href="#trans">Transcription Factors</a> </li>
  <li> <a href="#promoters"><i>E. coli</i> Promoters</a> </li> 
  <li> <a href="#globins">Globins</a>  </li>
  <li> <a href="#HTH">HTH motif</a>  </li>
  <li> <a href="#splice">Splice Signals</a> </li> 
</ul>
<p> 
The <strong>Edit Logo</strong> buttons will transfer the relevant
sequence data to the <a class="in" href="create.cgi">Logo creation form</a>. 
There you can examine the sequence data and recreate the logo for 
yourself. 
<!--Additional examples can be found at the 
<a href="http://www.lecb.ncifcrf.gov/~toms/sequencelogo.html">Sequence Logo
Gallery</a>.-->
</p>


<!--<hr >
<a name="CAP"></a>
<a name="CAP_HTH"></a>
<h2>Catobolite Activator Protein (CAP)</h2>

<img  alt="Catobolite Activator Protein (CAP) Logo"  src="examples/cap_hth.png">
<p>
The helix-turn-helix motif from the CAP family of homodimeric DNA
binding proteins.  CAP (Catabolite Activator Protein, also known as
CRP for cAMP Receptor Protein) is a transcription promoter that binds
at more than 100 sites within the <i>E.&nbsp;coli</i> genome.  Residues 1-7
form the first helix, 8-11 the turn and 12-20 form the DNA recognition
helix.  The glycine at position 9 appears to be
critical in forming the turn.  Positions 4, 8, 10, 15 and 19 are
partially or completely buried, and therefore tend to be populated by
hydrophobic amino acids, which are colored black.  Positions 11-14, 17
and 20 interact directly with bases in the major groove
and are critical to the sequence specific binding of the
protein.  The data for this logo consists of 100 sequences from the
full Pfam alignment of this family (Accession number
PF00325).  A few sequences with rare insertions were removed for
convenience.  
</p>-->

<!--
# Pfam 7.1 crp
# Accession number: PF00325
# Bacterial regulatory proteins, crp family
#
# Description 
# Numerous bacterial transcription regulatory
#  proteins bind DNA via a helix-turn-helix (HTH)
# motif. These proteins are very diverse, but 
# for convenience may be grouped into subfamilies on
# the basis of sequence similarity. One such 
# family groups together a range of proteins, including
# anr, crp, clp, cysR, fixK, flp, fnr, fnrN, hlyX and 
# ntcA [MEDLINE:91064083], [MEDLINE:93181282], 
# [MEDLINE:91008963]. Within this family, the HTH motif is situated
# towards the C-terminus.                      
# This is the full Pfam alignment, less a couple of inserts
# 102 sequences.
#
# http://pfam.wustl.edu/cgi-bin/getdesc?name=crp
#
# Introduction to protein structure, 1st edition, contains
# some more information.
# First number is sequence number is -5
# First Helix: 1-7, Turn: 8-11, 2nd (DNA recognition) 12-20
#
-->

<!--
<form method="post" action="create.cgi">
<input type="submit" name="cmd_edit" value="Edit Logo" >
<input type="hidden" name="logo_title" value="The DNA-binding helix-turn-helix motif of the CAP family" >
<input type="hidden" name="first_index" value="-5" >
<input type="hidden" name="logo_start" value="1" >
<input type="hidden" name="logo_end" value="20" >
<input type="hidden" name="show_xaxis" value="true" >
<input type="hidden" name="show_yaxis" value="true" >
<input type="hidden" name="show_errorbars" value="true" >
<input type="hidden" name="show_fineprint" value="true" >
<input type="hidden" name="scale_width" value="true" >
<input type="hidden" name="sequences" value=">Q9EXQ1/196-227 
LTMT.-RGDIGNYLGLTVETISRLLGRFQKLGVL
>Q46158/72-92 
LTMT.-RGDIGNYLGLTVETISR-----------
>Q46157/72-92 
LTMT.-RGDIGNYLGLTVETISR-----------
>Q46159/72-92 
LTMT.-RGDIGNYLGLTVETISR-----------
>Q47948/72-92 
LTMT.-RGDIGNYLGLTVETISR-----------
>FNR_HAEIN/196-227 
LTMT.-RGDIGNYLGLTVETISRLLGRFQKLGVI
>ETRA_SHEPU/193-224 
LTMT.-RGDIGNYLGLTVETISRLLGRFQKSGLI
>FNR_SALTY/193-224 
LTMT.-RGDIGNYLGLTVETISRLLGRFQKSGML
>Q9LA24/207-238 
LTMT.-RGDIGNYLGLTVETISRLLGRFQKSGML
>Q9AQ50/193-224 
LTMT.-RGDIGNYLGLTVETISRLLGRFQKSGML
>FNR_ECOLI/193-224 
LTMT.-RGDIGNYLGLTVETISRLLGRFQKSGML
>HLYX_ACTPL/192-223 
LTMT.-RGDIGNYLGLTIETISRLLGRFQKSGMI
>O31204/192-223 
LTMT.-RGDIGNYLGLTIETISRLLGRFQKSGMI
>Q9L801/192-223 
LTMT.-RGDIGNYLGLTIETISRLLGRFQKSGMI
>Q9KS27/193-224 
LTMT.-RGDIGNYLGLTVETISRLLGRFQKSEIL
>Q9CMY2/212-243 
LTMT.-RGDIGNYLGLTVETISRLLGRLQKMGIL
>Q44500/188-219 
LAMS.-RNEIGNYLGLAVETVSRVFSRFQQNELI
>ANR_PSEAE/188-219 
LAMS.-RNEIGNYLGLAVETVSRVFTRFQQNGLI
>O85222/188-219 
LSMS.-RNEIGNYLGLAVETVSRVFTRFQQNELI
>FNRA_PSEST/188-219 
LPMS.-RNEIGNYLGLAVETVSRVFTRFQQNGLL
>BTR_BORPE/186-217 
VRMS.-REEIGNYLGLTLETVSRLFSRFGREGLI
>Q9JQQ8/187-218 
LRMS.-REEIGSYLGLKLETVSRTLSKFHQEGLI
>O69245/180-211 
LPMC.-RRDIGDYLGLTLETVSRALSQLHTQGIL
>Q9AMR4/161-192 
LPMS.-RRDIADYLGLTVETVSRAVSQLHTDGVL
>FIXK_BRAJA/185-216 
LPMS.-RQDIADYLGLTIETVSRTFTKLERHGAI
>AADR_RHOPA/187-218 
LPMG.-RQDIADFLGLTIETVSRTFTKLEREKLI
>FIXK_RHIME/159-190 
LPMS.-RQDIADYLGLTIETVSRVVTKLKERSLI
>FIXK_AZOCA/196-227 
LAMS.-RQDIADFLGLTIETVSRTLTYLEEQGTI
>Q9AA54/164-195 
VPMS.-RQDMADYLGLTIETVSRTLTSLQDEGLI
>Q988V4/163-194 
LPMS.-RMDIGDYLGLTIETVSRVFTRLKDKGVI
>Q53170/175-206 
LPMT.-RLDVADYLGMTIETVSRTITKLAGSGVI
>Q989I4/189-220 
LPLT.-RADISDFLGLTNETVSRQLTRLRADGVI
>Q988R0/189-220 
LPLT.-RADIADFLGLTIETVSRQLTRLRTDGLI
>O06655/187-218 
LPLS.-RAEIADFLGLTIETVSRKLTKLRKSGVI
>O86069/185-216 
LPLS.-RAEIADFLGLTIETVSRQLTRLRKEGVI
>O86067/187-218 
LPLS.-RAEIADFLGLTIETVSRQMTRLRKWGVI
>Q52775/187-218 
LPLS.-RAEIADFLGLTIETVSRQMTRLRKSGVI
>FX24_RHILV/187-218 
LPLS.-RAEIADFLGLTIETVSRQMTRLRKIGVI
>FNRL_RHOSH/187-218 
LPLT.-REEMADYLGLTLETVSRQVSALKRDGVI
>Q51677/188-219 
LPLT.-REAMADYLGLTLETVSRQMSALKREGVI
>O33961/187-218 
LPLT.-REAMADYLGLTLETVSRQMSALKRDGVI
>O87372/155-185 
-SIS.-RADMADFLGLTTETVSRLLSAFHREQLI
>P95599/188-221 
LRVSmNRQDIADHLGLTIETLAHTVTKLASRNIV
>Q52823/185-216 
VPMS.-RQDIADHLGLTIETVSRTLTKLASRNVV
>Q9FDG3/192-223 
VPMN.-RQDIADHLGLTIETVSRTITKLAARNIV
>O84975/207-238 
LRMS.-REDIASYLGLRLETVCRSVARLRAQDVV
>Q53240/186-217 
FPIT.-RQNISEMTGTTLHTVSRLLSAWEREGIV
>O52578/162-191 
--IS.-RQDIAEMTGTTLHTVSRILSAWEQLGFV
>Q9KWP8/153-184 
FPIT.-KQDIAEMTGTTLHTVSRILTGWEAQGFV
>O66781/189-220 
LPLT.-RQDIAEMTGTTVETTIRVMSKWKKQGII
>Q982N1/28-58 
-PIA.-RGEIASRVGLTVQTVSTIVRELEEQGYI
>P96094/179-210 
LPAK.-KAMIAARLGLTPETFSRVLKRLREEHLI
>FLP_LACCA/168-199 
VPMA.-WTQLADYLGTTPETVSRTLKRLAEEKLI
>Q97IX9/173-206 
INMElSITYLADMLGSKRETVSRQLKLLTEKNLV
>Q9CE44/171-202 
IPMK.-LKELANYIGTSPETISRKIKVFEENKII
>Q9S392/178-209 
IPMK.-MKDLATFIGTTPETISRKFKILEEKGFI
>Q9S393/178-209 
IPMT.-LKDLSAFIGTTPETISRKLRLLEEKGLV
>Q98GX3/209-240 
LPLS.-QAELADVLGLSVVHMNRVIGALRKVGVV
>Q9XDD3/182-213 
CPLT.-QGELADALGLTPIHINRMLRELREDNLL
>NTCA_ANASP/172-203 
LKLS.-HQAIAEAIGSTRVTVTRLLGDLREKKMI
>NTCA_SYNP7/171-202 
LKLS.-HQAIAEAIGSTRVTVTRLLGDLRESKLI
>NTCA_SYNY3/174-205 
LKLS.-HQAIAEAIGSTRVTVTRLLGDLREGNMI
>P94611/175-206 
LKLS.-HQAIAEAIGSTRVTVTRLLGDLRQEEMI
>Q9L627/170-201 
LKLS.-HQAIAEAIGSTRVTVTRLLGDLRQDEMI
>Q9AG80/172-203 
LKLS.-HQAIAEAIGSTRVTVTRLLGDLRQDKMI
>O30778/173-204 
LRLS.-HQAIAEAIGSTRVTITRLLGDLRNSGLV
>Q9KI45/189-220 
FPLT.-HAQIGSAIGSTRVTVTRLMGKLRQRGLI
>CYSR_SYNP7/152-183 
IPLT.-HQVIAELSGSTRVTTTRLLGEFRQAGRI
>CYSR_SYNY3/160-191 
VRLT.-HQMLANAIGTTRVTVTRLLGEFQTQGKV
>Q55322/177-208 
LRLT.-HQEMASALSTTRVTVTRVIGLLRDEGWL
>Q9RTV7/201-231 
-RIS.-HQDLAHSVGSTRETITKLLGDFRTRGLL
>Q9TLZ6/157-188 
IYIS.-QHDIASILSTTRSTITRLINQLRKDNII
>FNR_BACSU/174-205 
IVLT.-NQDLAKFCAAARESVNRMLGDLRKKGVI
>O86128/173-204 
IVLT.-NQDLAKFCAAARESINRMLSDLRKNGVI
>Q9KG81/173-204 
IVLT.-NQELANFCAAARESVNRMLGELRKLGVI
>CRP_PASMU/165-196 
IKIT.-RQEIGQMVGCSRETVGRILKMLEDQHLI
>Q48301/170-201 
IKIT.-RQEIGQMVGCSRETVGRILKMLEDQHLI
>CRP_HAEIN/180-211 
IKIT.-RQEIGQMVGCSRETVGRIIKMLEDQNLI
>Q51859/180-211 
IKIT.-RQEIGQMVGCSRETVGRIIKMLEDEGLI
>Q9F435/166-197 
IKIT.-RQEIGQIVGCSRETVGHILKMLEDQNLI
>CRP_ECOLI/166-197 
IKIT.-RQEIGQIVGCSRETVGRILKMLEDQNLI
>CRP_SALTY/166-197 
IKIT.-RQEIGQIVGCSRETVGRILKMLEDQNLI
>O07097/166-197 
IKIT.-RQEIGQIVGCSRETVGRILKMLEDQNLI
>Q9ALY5/166-197 
IKIT.-RQEIGQIVGCSRETVGRILKMLEEQNLI
>O34015/166-197 
IKIT.-RQEIGQIVGCSRETVGRILKMLEEQNLI
>Q9KNW6/166-197 
IKIT.-RQEIGQIVGCSRETVGRILKMLEEQNLI
>CLP_XANCP/186-217 
LRVS.-RQELARLVGCCAQMAGRVLKKLQADGLL
>Q9PD39/185-216 
LRVS.-RQELARLVGCSREMAGRVLKKLQADGLL
>Q9S6B5/186-217 
LRVS.-RQELARLVGCSREMAGRVLKKLQADGLL
>P71977/33-62 
--LS.-QAEIGERVGMARSTVSRILNALEDEGLV
>O28174/36-67 
VKIS.-SKELAEHIGQSLQTAARKLKELEDEGLI
>Q9CB91/174-204 
-DLT.-QEEIAQLVGASRETVNKALADFAHRGWI
>O69644/174-204 
-DLT.-QEEIAQLVGASRETVNKALADFAHRGWI
>Q9XA42/174-204 
-DLT.-QEELAQLVGASRETVNKALADFAQRGWL
>Q97TL8/136-167 
INCT.-HEDIGKAVGVSRVTVSRTLNKFSQYQWI
>Q99YT6/175-206 
FQLT.-TTDIAQISGTTRETVSHVLRDLKKQELI
>Q9RRX0/176-209 
LNLKlNQEDIARMVGATRETVSHSLSRLKKGGAI
>Q9K5F3/178-209 
CPIT.-AAEIAKISGTSRETVSAVLKKLRCEGVI
>P73234/185-215 
-NLP.-HRETAMLSGVTRETVTRTLGKLEKKGLI
>P74171/182-212 
-NLP.-HRELSSISGLARETVTRCLTKLEKRGLI
>Q981X4/78-109 
AKVT.-HDQIAAMVGSTRQWVTMMMKRFQKEGLV
" >
</form>-->



<!--<!--<img alt="CAP Binding Site Logo" 
src="examples/cap_dna.png" >
<p>
The two DNA recognition helixes of the CAP homodimer insert
themselves into consecutive turns of the major groove.  Several
consequences can be observed in this CAP binding site logo.  The logo
is approximately palindromic, which provides two very similar
recognition sites, one for each subunit of the dimer.  
However, the binding
site is not perfectly symmetric, possible due to the 
inherent asymmetry of the operon promoter region.
The displacement of the two parts is 11 base pairs, or approximately
one full turn of the DNA helix.  Additional interactions between the
protein and the first and last two bases occur within the DNA minor
groove, where it is difficult for the protein to distinguish A from T,
or G from C.
The data for this logo consists of 59 binding sites determined by 
<a href="#footprinting">DNA footprinting</a>.
<cite>
Robison, K., McGuire, A. M., Church, G. M. A comprehensive library of 
DNA-binding site matrices for 55 proteins applied to the
complete <i>Escherichia coli</i> K12 genome. Journal of Molecular Biology 
(1998) 284, 241-254. 
</cite>
</p>

<form method="post" action="create.cgi">
<input type="submit" name="cmd_edit" value="Edit Logo" >
<input type="hidden" name="first_index" value="-10" >
<input type="hidden" name="show_xaxis" value="true" >
<input type="hidden" name="show_yaxis" value="true" >
<input type="hidden" name="show_errorbars" value="true" >
<input type="hidden" name="show_fineprint" value="true" >
<input type="hidden" name="scale_width" value="true" >
<input type="hidden" name="logo_title" value="58 CAP Binding Sites" >
<input type="hidden" name="sequences" value="
>aldB -18->4
attcgtgatagctgtcgtaaag
>ansB 103->125
ttttgttacctgcctctaactt
>araB1 109->131
aagtgtgacgccgtgcaaataa
>araB2 147->169 
tgccgtgattatagacactttt
>cdd 1 107->129
atttgcgatgcgtcgcgcattt
>cdd 2 57->79
taatgagattcagatcacatat
>crp 1 115->137
taatgtgacgtcctttgcatac
>crp 2
gaaggcgacctgggtcatgctg
>cya 151->173 
aggtgttaaattgatcacgttt
>cytR 1 125->147
cgatgcgaggcggatcgaaaaa
>cytR 2 106->128
aaattcaatattcatcacactt
>dadAX 1 95->117
agatgtgagccagctcaccata
>dadAX 2 32->54
agatgtgattagattattattc
>deoP2 1 75->97
aattgtgatgtgtatcgaagtg
>deoP2 2 128->150 
ttatttgaaccagatcgcatta
>fur 136->158
aaatgtaagctgtgccacgttt
>gal 56->78
aagtgtgacatggaataaatta
>glpACB (glpTQ) 1 54->76  
ttgtttgatttcgcgcatattc
>glpACB (glpTQ) 2 94->116
aaacgtgatttcatgcgtcatt
>glpACB (glpTQ) 144->166 
atgtgtgcggcaattcacattt
>glpD (glpE) 95->117 
taatgttatacatatcactcta
>glpFK 1 120->142
ttttatgacgaggcacacacat
>glpFK 2 95->117
aagttcgatatttctcgttttt
>gut (srlA) 72->94
ttttgcgatcaaaataacactt
>ilvB 87->109
aaacgtgatcaacccctcaatt
>lac 1 (lacZ) 88->110
taatgtgagttagctcactcat
>lac 2 (lacZ) 16->38 
aattgtgagcggataacaattt
>malEpKp1 110->132
ttgtgtgatctctgttacagaa
>malEpKp2 139->161
TAAtgtggagatgcgcacaTAA
>malEpKp3 173->195
TTTtgcaagcaacatcacgAAA
>malEpKp4 205->227
GACctcggtttagttcacaGAA
>malT 121->143
aattgtgacacagtgcaaattc
>melR 52->74
aaccgtgctcccactcgcagtc
>mtl 302->324
TCTTGTGATTCAGATCACAAAG
>nag 156->178
ttttgtgagttttgtcaccaaa
>nupG2 97->119
aaatgttatccacatcacaatt
>nupG1 47->69
ttatttgccacaggtaacaaaa
>ompA 166->188
atgcctgacggagttcacactt
>ompR 161->183
taacgtgatcatatcaacagaa
>ptsH A 316->338
Ttttgtggcctgcttcaaactt
>ptsH B 188->210
ttttatgatttggttcaattct
>rhaS (rhaB) 161->183 
aattgtgaacatcatcacgttc
>rot 1 (ppiA) 182->204 
ttttgtgatctgtttaaatgtt
>rot 2 (ppiA) 129->151
agaggtgattttgatcacggaa
>tdcA 60->82
atttgtgagtggtcgcacatat
>tnaL 73->95
gattgtgattcgattcacattt
>tsx 2 146->168
gtgtgtaaacgtgaacgcaatc
>tsx 1 107->129
aactgtgaaacgaaacatattt
>uxuAB 165->187
TCTTGTGATGTGGTTAACCAAT
" >
</form>

<hr ><a name="trans"></a>
<h2><i>E. coli</i> Transcription Factor Binding Sites</h2>

<p>
The following logos (along with the <a href="#CAP">CAP logo</a> above) display
a selection of <i>E. coli</i> transcription factor binding sites determined 
by DNA footprinting. This data has been collated in the 
<a href="http://arep.med.harvard.edu/dpinteract/">DPInteract</a>
database and has been used to 
<a href="http://arep.med.harvard.edu/ecoli_matrices/">search for 
additional binding sites</a> within the <i>E. coli</i> genome.
</p>
<p>
<a name="footprinting"></a>
<cite>
Robison, K., McGuire, A. M., Church, G. M. A comprehensive library of 
DNA-binding site matrices for 55 proteins applied to the
complete <i>Escherichia coli</i> K12 genome. Journal of Molecular Biology 
(1998) 284, 241-254. 
</cite>
</p>

<a name="LexA"></a>
<img alt ="" src="examples/lexA.png"  ><br >
<form method="post" action="create.cgi">
<input type="submit" name="cmd_edit" value="Edit Logo" >
LexA repressor is closely related to CAP, and has similar DNA protein 
interactions.
<input type="hidden" name="logo_title" value="19 LexA Binding Sites" >
<input type="hidden" name="first_index" value="-9" >
<input type="hidden" name="show_xaxis" value="true" >
<input type="hidden" name="show_yaxis" value="true" >
<input type="hidden" name="show_errorbars" value="true" >
<input type="hidden" name="show_fineprint" value="true" >
<input type="hidden" name="scale_width" value="true" >
<input type="hidden" name="sequences" value="
>dinD 32->52
aactgtatataaatacagtt
>dinG 15->35 
tattggctgtttatacagta
>dinH 77->97
tcctgttaatccatacagca
>dinI 19->39
acctgtataaataaccagta
>lexA-1 28->48
tgctgtatatactcacagca
>lexA-2 7->27
aactgtatatacacccaggg
>polB(dinA) 53->73
gactgtataaaaccacagcc
>recA 59->79
tactgtatgagcatacagta
>recN-1 49->69
tactgtatataaaaccagtt
>recN-2 27->47
tactgtacacaataacagta
>recN-3 9-29
TCCTGTATGAAAAACCATTA
>ruvAB 49->69
cgctggatatctatccagca
>sosC 18->38
tactgatgatatatacaggt
>sosD 14->34
cactggatagataaccagca
>sulA 22->42
tactgtacatccatacagta
>umuDC 20->40
tactgtatataaaaacagta
>uvrA 83->103 
tactgtatattcattcaggt
>uvrB 75->95
aactgtttttttatccagta
>uvrD 57->77
atctgtatatatacccagct" >
</form>

<a name="hns"></a>
<!--<img alt ="" src="examples/hns.png" >-->
<!--<form method="post" action="create.cgi">
<input type="submit" name="cmd_edit" value="Edit Logo" >
H-NS: Histone like, nucleoid-associated DNA-binding protein.
<input type="hidden" name="logo_title" value="15 hns Binding Sites" >
<input type="hidden" name="first_index" value="-1" >
<input type="hidden" name="logo_start" value="1" >
<input type="hidden" name="show_xaxis" value="true" >
<input type="hidden" name="show_yaxis" value="true" >
<input type="hidden" name="show_errorbars" value="true" >
<input type="hidden" name="show_fineprint" value="true" >
<input type="hidden" name="scale_width" value="true" >
<input type="hidden" name="sequences" value="
>hns1
tAGGCTGATTT
>hns2
gAAAATTATTT
>hns3
gGGAGTTATTC
>hns4
aCAAATTATTT
>hns5
gCAACAGAGTA
>hns6
aCGCCTGAATA
>hns7
tCGAGAAAGTT
>hns8
tCGCCGGAATT
>hns9
tGGCATGAATA
>hns10
aTAAAGGAATC
>hns11
cTAATTTAATT
>hns12
gCAATTAAATT
>hns13
tGACATGAATC
>hns14
cTGGCTAATTT
>hns15
aCAACTGAATT" >
</form>


<a name="dnaA"></a>-->
<!--<img alt="" src="examples/dnaA.png" >-->
<!--<form method="post" action="create.cgi">
<input type="submit" name="cmd_edit" value="Edit Logo" >
DNA biosynthesis initiation binding protein.
<input type="hidden" name="logo_title" value="8 dnaA Binding Sites" >
<input type="hidden" name="logo_end" value="14" >
<input type="hidden" name="show_xaxis" value="true" >
<input type="hidden" name="show_yaxis" value="true" >
<input type="hidden" name="show_errorbars" value="true" >
<input type="hidden" name="show_fineprint" value="true" >
<input type="hidden" name="scale_width" value="true" >
<input type="hidden" name="sequences" value="
>dnaA_1 rpoH-1
aatttattcacaagc
>dnaA_2 rpoH-2
attttatccacaagt
>dnaA_3 nrd
gagttatccacaaag
>dnaA_4 oriC-R1
ttgttatccacaggg
>dnaA_5 oriC-R2
ggggttatacacaac
>dnaA_6 oriC-R3
ttctttggataacta
>dnaA_7 oriC-R4
gagttatccacagta
>dnaA_10   dnaA
gatttatccacagga" > 
</form>
-->

<!-- <a name="argR"></a> -->
<!--<img alt ="" src="examples/argR.png" >-->
<!--<form method="post" action="create.cgi">
<input type="submit" name="cmd_edit" value="Edit Logo" >
Arginine Repressor.
<input type="hidden" name="logo_title" value="17 ArgR Binding Sites" >
<input type="hidden" name="first_index" value="-8" >
<input type="hidden" name="show_xaxis" value="true" >
<input type="hidden" name="show_yaxis" value="true" >
<input type="hidden" name="show_errorbars" value="true" >
<input type="hidden" name="show_fineprint" value="true" >
<input type="hidden" name="scale_width" value="true" >
<input type="hidden" name="sequences" value="
>argA-1 32->50
acagaataaaaatacact
>argA-2 11->29 
ttcgaataatcatgcaaa
>argD-1 51->69
agtgattttttatgcata
>argD-2 30->48
tgtggttataatttcaca
>argECBH-1 26->44, argC 110->128
tatcaatattcatgcagt
>argECBH-2 47->65, argC 89->107
tatgaataaaaatacact
>argF-1 48->66
aatgaataattacacata
>argF-2 27->45
agtgaattttaattcaat
>argG-1 73->91
attaaatgaaaactcatt
>argG-2 52->70
tttgcataaaaattcagt
>argG-3 192->210
tgtgaatgaatatccagt
>argI-1 46->64
aatgaataatcatccata
>argI-2 25->43
attgaattttaattcatt
>argR-1 45->63
tttgcataaaaattcatc
>argR-2 24->42
tatgcacaataatgttgt
>carAB-1 32->50
tgtgaattaatatgcaaa
>carAB-2 11->29
agtgagtgaatattctct" >
</form>



<hr >
<a name="promoters"></a>
<h2><i>E. coli</i> Promoters (Transcription Start Signals)</h2>

<p>
<img alt="" src="examples/ecoli10.png"><br >
In prokaryotes the DNA sequence just upstream of the transcription start point
contains two important conserved regions. The first such region is centered
at around 35bp upstream and is involved in the initial recognition of the 
gene by RNA polymerase. -->
<!--The consensus sequence is TTGACAT, but the logo
indicates that a great deal of variation occurs. --> 
<!--The second region, sometimes
referred to as the Pribnow box, is centered at about 10bp upstream. The typical
separation between the -35 and -10 sites is 15-18 bp. 
See 
<a class="out" href="http://www.lecb.ncifcrf.gov/~toms/papers/baseflip/">baseflip: 
Strong Minor Groove Base Conservation in Sequence Logos
implies DNA Distortion or Base Flipping during Replication and
Transcription Initiation</a> for more information. This sequence data was kindly provided by Prof. Julia Brettschneider &lt;juliab@stat.berkeley.edu&gt;
</p>-->

<!--
<form method="post" action="create.cgi">
<input type="submit" name="cmd_edit" value="Edit Logo" >
 The -10 region of 350 E. coli promoters
<input type="hidden" name="logo_title" value="-10 region of 3E. coli promoters" >
<input type="hidden" name="first_index" value="-21" >
<input type="hidden" name="logo_start" value="0" >
<input type="hidden" name="logo_end" value="7" >
<input type="hidden" name="show_xaxis" value="true" >
<input type="hidden" name="show_yaxis" value="true" >
<input type="hidden" name="show_errorbars" value="true" >
<input type="hidden" name="show_fineprint" value="true" >
<input type="hidden" name="scale_width" value="true" >
<input type="hidden" name="sequences" value="> The -10 hexamers of 350 E.coli promoters
gatgacgtggtttacgaccccaTTTAGTagtcaaccgcagtgagtgagtc
>
ttgaaaccagacgtttcgccccTATTACagactcacaaccacatgatgac
>
ctggcggcgtagcgatgcgctgGTTACTctgaaaacggtctatgcaaatt
>
tgacttttagcgcccatatctcCAGAATgccgccgtttgccagaaattcg
>
gatttacgtcatcattgtgaatTAATATgcaaataaagtgagtgaatatt
>
agaatacagcttattgaataccCATTATgagttagccattaacgcgtcca
>
cgacgacggtttacgctttacgTATAGTggcgacaattttttttatcggg
>
ctgacgctttttatcgcaactcTCTACTgtttctccatacccgttttttt
>
atccgtttttgtatccagtaacTCTAAAagcatatcgcattcatctggag
>
ttttttattgaatgtagaatttTATTCTgaatgtgtgggctctctatttt
>
tattctgaatgtgtgggctctcTATTTTaggattaattaaaaaaatagag
>
tcttttcacctttcctcctgttTATTCTtattaccccgtgtttatgtctc
>
attgcttaagcaagatcggacgGTTAATgtgttttacacattttttccgt
>
gcgccacactaaggtaattcctTATGCTggcaatgtcgtgaccagtgata
>
tgcagcctgtgctcagcgcgtgTTTCATacgcaagtgcgtatcggcgcgc
>
tgcattcgctgccgcataccatTATTCTtgatctgacggaagtctttttg
>
ggacataaggtgaatactttgtTACTTTagcgtcacagacatgaaattgg
>
ttattgagctttccggcgagagTTCAATgggacaggttccagaaaactca
>
ttaaaaattgttaacaattttgTAAAATaccgacggatagaacgacccgg
>
taacacctcgtcaaaatcctgcTATTCTgcccgttgcggtactgggcatt
>
tctattttatattattccctgtTTTAATtaactctatcagggatggttta
>
gacagaggccctcaatccaaacGATAAAgggtgatgtgtttactgatatg
>
tgctatctcgctgacggacaggCAAATTgatgaccagcttttaaaccgac
>
tttgacatttcttttgcactggTAAACTaaatcacttttttttgtcccag
>
ttttctcgcgtccgcgatagcgTAAAATagcgccgtaacccccaggtcct
>
aatttctacctgtttaagcatcTCTGGTagacttcctgtaattgaatcga
>
tgcagtgctcatagcggtcattTATGTCagacttgtcgttttacagttcg
>
aacatatctcgcaagcctgtctTGTGTTgacaacattttctgctaaccct
>
ctctccctgacgcgggataaagTGGTATtctcaaacatatctcgcaagcc
>
tatatctttaacaatctcaggtTAAAAActttcctgttttcaacgggact
>
gttgcaaatgaataattacacaTATAAAgtgaattttaattcaataagtg
>
tgaacgtccaatcaataaccgcTTTAATagataaacaccgctgatgaatg
>
ttgctttttatcttcagatgaaTAGAATgcggcggattttttgggtttca
>
gtcataaggtaaaagtctcattTATGATgagttccattggatttacttat
>
ttaccttatgacaatcggcgagTAGTCTgcctctcattccagagacagac
>
tacactttatgcttccggctcgTATGTTgtgtggaattgtgagcggataa
>
cgcaaaacctttcgcggtatggCATGATagcgcccggaagagagtcaatt
>
taaagttgtcacggccgagactTATAGTcgctttgtttttattttttaat
>
ttcattcttgaatatttattggTATAGTaaggggtgtattgagattttca
>
atctcttggccttgctggtcgtTATCCTgcaagctatcactttattggct
>
taaatctgtcataaatctgacgCATAATgacgtcgcattaatgatcgcaa
>
tgcagggagagcgccccggcacTAGACTacccgcctcttattttagtctg
>
acatatttttgtgagcaatgatTTTTATaataggctcctctgtatacgaa
>
ttacagtaatgtaaccttcccgTAAAATgcccacacactttaaacgccac
>
tagcgtaacaacaaaagattgtTATGCTtgaaatatggtgatgccgtacc
>
tcccttgtccccatctctcccaCATCCTgtttttaaccttaaaatggcat
>
tgaggcaatcgcctgttggtggTATCGTttatcgctttttcaaaaaattc
>
gattgcagaaatatattgataaTATTATtgataactatttgcatttgcaa
>
aaatgcaaatagttatcaataaTATTATcaatatatttctgcaatcaatg
>
tgctggaaaattaatgtgctttTATAGTggcgcttattgttgtcaatatt
>
attatcactcccttttactggcTAAACCagaaaacttattttatcattca
>
tcacacactctgtagcagatgaTCTAACaatctgattacagaacatcggc
>
tgtcagcctgtcccgcttataaGATCATacgccgttatacgttgtttacg
>
tttcatttaggcgtggcaattcTATAATgatacgcattatctcaagagca
>
acagttattagtggtagacaagTTTAATaattcggattgctaagtacttg
>
acaaacattaccaggaaaagcaTATAATgcgtaaaagttatgaagtcggt
>
tgtaatgattttgtgaacagccTATACTgccgccaggtctccggaacacc
>
tgggcagcttcttcgtcaaattTATCATgtggggcatccttaccgctctg
>
ctttaaaaactgcccctgacacTAAGACagtttttaaaggttccttcgcg
>
ggaaatgggcatcaaaaagagaTAAATTgttctcgatcaaattggctgaa
>
ttacacattctgacggaagataTAGATTggaagtattgcattcactaaga
>
gtcacacttttcgcatctttgtTATGCTatggttatttcataccataagc
>
gtcacacttttcgcatctttgtTATGCTatggttatttcataccataagc
>
gttttttgttgttaattcggtgTAGACTtgtaaacctaaatcttttcaat
>
tgtaaaccaaattgaaaagattTAGGTTtacaagtctacaccgaattaac
>
caaaactggcacgattttttcaTATATGtgaatgtcacgcaggggatcgt
>
tttttcatcaggttttacgctaAATAATcactgtgttgagtgcacaattt
>
ttgacggctcgccctaattctcTAAATTgtatttctagagttggcgaggt
>
cgtgttacaaaaattcttttctTATGATgtagaacgtgcaacgcaattga
>
caaaaattcttttcttatgatgTAGAACgtgcaacgcaattgatgctcgc
>
gatggtgaacaagtacgcgaggGAGAATgagcatccattgctgtgtacgc
>
actcctcacttacacgtaatacTACTTTcgagtgaaaatctacctatctc
>
ggtggtggtttgttggttgggtTGACATactgggtcatttacctgcgtga
>
tatggtgctgccggtcgcgatgTTTGTTgccagcggttttgagcacagta
>
gcaaacctgatggtatgtctggCAGTATggatgagttattctggccgcag
>
tttctcatctataatgctttgtTAGTATctcgtcgccgacttaataaaga
>
tttctcatctataatgctttgtTAGTATctcgtcgccgacttaataaaga
>
tgataaaaccgatagccacaggAATAATgtattacctgtggtcgcaatcg
>
gagcaagtgattgaaaaagcgcTACAATacgcgcgccagaaattggctct
>
tggaattttgtaaatctcccgtTACCCTgatagcggacttcccttctgta
>
ttcaataaattgcgaaacaaggTATACTccagcagttcctgaagatgttt
>
acgcagcagtagcaaactaagcTATAAAttgcagcgcgaactggagcagc
>
tgttcagcgtacacgtgttagcTATCCTgcgtgcttcaataaaataaggc
>
ttgtaagttttcaactacgttgTAGACTttacatcgccaggggtgctcgg
>
ttcacacttgtaagttttcaacTACGTTgtagactttacatcgccagggg
>
gttgatctttgttgtcactggaTGTACTgtacatccatacagtaactcac
>
attagcatcgcatcaggcaatcAATAATgtcagatatgaaaagcggaaac
>
tggcatatgaaattttgaggatTACCCTacacttataggagttaccttac
>
acatggttgcacaaagttgcaaCATCATggatatttcacgataacgttaa
>
aaaatttaatgtaaatggtgtgTTAAATcgattgtgaataaccagcgctt
>
aaaatttaatgtaaatggtgtgTTAAATcgattgtgaataaccagcgctt
>
tgtgaataaccagcgcttccggCAGGATacggtcgccctggtaaaacata
>
aacggcaagtttcgacattgccGATAATaattttttggagactttagatg
>
catcactctgtcatctttccagTAGAAActaatgtcactgaaatggtgtt
>
gtcggaatggctggttatccatTAAAATagatcggatcgatataagcaca
>
tgcaaaggaaaacgtttccgctTATCCTttgtgtccggcaaaaacatccc
>
tgactctatgacgttacaaagtTAATATgcgcgccctatgcaaaaggtaa
>
tttcagagattatgaattgccgCATTATagcctaataacgcgcatctttc
>
ttcatgacggcaaacaatagggTAGTATtgacaagccaattacaaatcat
>
tgatctgctggcaagaacagacTACTGTatataaaaacagtataacttca
>
tgaataatattttcaactgagtTATCAAgatgtgattagattattattct
>
gatcatgcagctagtgcgatccTGAACTaaggttttctgatacttgaata
>
gatgcggtgctttcctggctgtTAGAATacgccccgtcgcgcctgactgg
>
agcgttaccgtccgctatcgtcTATGTTcaagttgtcttaattgccagaa
>
tttattgatcttacgcatcctgTATGATgcaagcagactaaccctatcaa
>
catcaaattgcctttagctacaGACACTaaggtggcagacatcgaaacga
>
gtttcagagcgttaccttgcccTTAAACattagcaatgtcgatttatcag
>
tgcacaactgaatttaaggctcTATTATtacctcaacaaaccaccccaat
>
taatgtagccaccaaatcatacTACAATttattaactgttagctataatg
>
tgctgaagaataattgaaatgaTATTATtaattccactgcctttggtaga
>
gaatatgattgctatttgcattTAAAATcgagacctggtttttctactga
>
cgtgacattttaacacgtttgtTACAAGgtaaaggcgacgccgcccatga
>
tgacaattaatcatcgaactagTTAACTagtacgcaagttcacgtaaaaa
>
ttgcgtatcggattttatcaggTACAGTgtgacgctttcgtcaatctggc
>
gacgctttcgtcaatctggcaaTAGATTtgcttgacattcgaccaaaatt
>
acattcgaccaaaattccgtcgTGCTATagcgcctgtaggccaagacctg
>
ggtgaaccccttctcgttatggCAAAATaagccaatacagaaccagcatt
>
gacagatttgtgccattccgtgAACGATcgacgcgtcgtgattaggtgaa
>
tttcaccagacttattcttagcTATTATagttatagagagcttacttccg
>
tcctgctatccaaatagtgtcaTATCATcatattaattgttcttttttca
>
gctgtgttattgacagttagcaTAAACTaggtgtgacgttaactatatgt
>
cgattccgtctctctgatgattGATGTTaattaacaatgtattcaccgaa
>
tgtccttgttcgataaacacaaTAAACTtgatcatgaaattgccagaaag
>
tatcctcgtgctgtttctcacgTAGTCTataatttcctttttaagcccac
>
tttgttaaaaaagtgtgtaggaTATTGTtactcgcttttaacagggcaac
>
ttacttcccgtaggattcttgcTTTAATagtgggattaatttccacatta
>
attacgcaacgataatagcgggTATAAGataaataaaaggtaaaacgttt
>
tttgtctcaccttttaatttgcTACCCTatccatacgcacaataaggcta
>
tccccttttcgtcaagatcggcCAAAATtccacgcttacactatttgcgt
>
attctcaacataaaaaactttgTGTAATacttgtaacgctacatggagat
>
ttcatccggttaaatatgcaaaGATAAAtgcgcagaaatgtgtttctcaa
>
gtgcattagcttatttttttgtTATCATgctaaccacccggcgaggtgtg
>
tgacttttatcgccgtagccttTTCAATaaaggtcttttgaagagtacca
>
ttaacgtttttaactttttaatTAGAATatagatacaggagagcacatat
>
taacggatgtatccgtttagtcTATGATatgtacagcacttttggcttcg
>
tcactttccgctgattcggtgcCAGACTgaaatcagcctataggaggaaa
>
gggcttgaaaaagcgcccaatgTATTCCaggcttatctaacacgctgata
>
cttaccgtcacattcttgatggTATAGTcgaaaactgcaaaagcacatga
>
accaactggcaaaattttgtccTAAACTtgatctcgacgaaatggctgca
>
catttttatcgtaattgcccttTAAAATtcggggcgccgaccccatgtgg
>
aaaattcggggcgccgaccccaTGTGGTctcaagcccaaaggaagagtga
>
ttgacgctgcgtaaggtttttgTAATTTtacaggcaaccttttattcact
>
ataaaataattttttcgatatcTAAAATaaatcgcgaaacgcaggggttt
>
ttgaaaatagtcgcgtaacccaTACGATgtgggtatcgcatattgcgttt
>
tttcgcaagctcgtaaaagcagTACAGTgcaccgtaagaaaattacaagt
>
tcttcatccttcgctggatatcTATCCAgcatttttttatcatacagcat
>
gacgagtacagttgcgtcgattTAGGAAaaatcttagataagtgtaaaga
>
cttcatgaccgtgaatagagtcCATCGTccctcctcaaaaaaagcctagc
>
tgacgaagcagccgttatgcctTAACCTgcgccgcagatatcactcataa
>
tgaaacattgatgtctctgtagCAACATaggggtaatcttactgacaaca
>
tgtctgaacgtgaattgcagatTATGCTgatgatcaccaagggccagaag
>
tcaaagttgcaataaaaaccgcTAATATacgaatgactaactatcagtag
>
gattaaaaaccctgcagaaacgGATAATcatgccgataactcatataacg
>
ctttgttgcgctcaagacgcagGATAATtagccgataagcagtagcgaca
>
tactttaagacaattccaggcaAATTATacaacactttacgggatagtaa
>
tttgtttcacatttctgtgacaTACTATcggatgtgcggtaattgtatgg
>
ttcacatttctgtgacatactaTCGGATgtgcggtaattgtatggaacag
>
ttcacatttctgtgacatactaTCGGATgtgcggtaattgtatggaacag
>
tgtgacatactatcggatgtgcGGTAATtgtatggaacaggagacacaca
>
tgtgacatactatcggatgtgcGGTAATtgtatggaacaggagacacaca
>
gctgattagcacggtgatatttGATACTctggcagacagcagaaataacg
>
taataaatagttaattaacgctCATCATtgtacaatgaactgtacaaaag
>
ttaaatctttgtgggatcagggCATTATcttacgtgatcagaataaacaa
>
ttatactttaataagtactttgTATACTtatttgcgaacattccaggccg
>
atataaagccacaacgggttcgTAAACTgttatcccattacatgattatg
>
gaagtcctgtattcagtgctgaCAAAATagccgccagcaagcagtcattt
>
tgataattgttatcgtttgcatTATCGTtacgccgcaatcaaaaaaggct
>
taacatttggattgataattgtTATCGTttgcattatcgttacgccgcaa
>
tggattattctgcatttttgggGAGAATggacttgccgactgattaatga
>
acctcaaactgcgcggctgtgtTATAATttgcgacctttgaatccgggat
>
tgcaagagggtcattttcacacTATCTTgcagtgaatcccaaacataccc
>
atttaatttatgaatgttttctTAACATcgcggcaactcaagaaacggca
>
aaatcacgtttcactttcgaatTATGAGcgaatatgcgcgaaatcaaaca
>
attagctgtataaaagaatttcTACAGTgattgtaaggttttttttattc
>
ccaaagtttcgggctgttatgtTTTAATgtgcaacattcatggtctgttg
>
acgagagttaaccggacaagtgTGCCATaatctcgcggccaggcatactt
>
tgttcggcgtacaagtgtacgcTATTGTgcattcgaaacttactctatgt
>
caacattccagctggtccgaccTATACTctcgccactggtctgatttcta
>
ggcgctacgctcaatgaaacatTTAAATactatacgacagcgacatttat
>
ttgaggaatcaggcgggagtgaTAGAATatcgcccacttaatttttccag
>
tgtcaacgaaaacaataatgcgTAAGGTagaaacccgaactacattgagg
>
tgcgcaatttgtcaacgaaaacAATAATgcgtaaggtagaaacccgaact
>
ttccgcatattctctgagcgggTATGCTacctgttgtatcccaatttcat
>
attcagcctgtcggaactggtaTTTAACcagactaattattttgatgcgc
>
attcagcctgtcggaactggtaTTTAACcagactaattattttgatgcgc
>
ggttcaattcttcctttagcggCATAATgtttaatgacgtacgaaacgtc
>
ttcttcctttagcggcataatgTTTAATgacgtacgaaacgtcagcggtc
>
tggcagttgaccgtggtaatgaTATGATttcacacctttaccagccaatg
>
gcttttaatgccataccaaacgTACCATtgagacacttgtttgcacagag
>
attgttgtatgcatgtttttttTATGCTttccttaagaacaactcacccc
>
cagaactcaatgcacaaggcagTATTAAcgtcgtcaattattcccaacat
>
ttgccgccttgaagaaaggaggTATAATccgtcgattttttttgtggctg
>
cgcaaacgtttgctttccctgtTAGAATtgcgccgaattttatttttcta
>
ccggaagctggttgcgtgaaatTAGAAAtttcgccgctgatccaaacctg
>
gggaagcgcctcgcttcccgtgTATGATtgaacccgcatggctcccgaaa
>
ttcccttcgccatttccttgagCAAACTttagctattcttatcaattatg
>
tgttatcgcacaatgattcggtTATACTgttcgccgttgtccaacaggac
>
ggaatgaattggcgttatgtgtTACGTTtagcagatcaaaagacaggcga
>
ggggcgcaaccggacagaatttTATAAActgctttcccgacacgagctgg
>
ttcgtcagcgcatcagattcttTATAATgacgcccgtttcccccccttgg
>
ttgtagtgtagaatgcggcgttTCTATTaatacagacgttaagctcagaa
>
gaataattgagggatgacctcaTTTAATctccagtagcaactttgatccg
>
gacagcgtgaaaacagtacgggTACTGTactaaagtcacttaaggaaaca
>
ttgaaaactttactttatgtgtTATCGTtacgtcatcctcgctgaggatc
>
ttgaaaccctgaaactgatcccCATAATaagcgaagttagcgagatgaat
>
ggaaatataataagtgatcgctTACACTacgcgacgaaatactttttttg
>
acgcaaataatttgtggtgatcTACACTgatactctgttgcattattcgc
>
tgcattattcgcctgaaaccacAATATTcaggcgttttttcgctatcttt
>
ttgcctcagattctcagtatgtTAGGGTagaaaaaagtgactatttccat
>
ttactttatttgtcactgtcgtTACTATatcggctgaaattaatgaggtc
>
taccttcccagtcaagaaaactTATCTTattcccacttttcagttaccag
>
ttgatactgtatgagcatacagTATAATtgcttcaacagaacatattgac
>
cttttaaatctttcaatctgatTAGATTaggttgccgtttggtaataaaa
>
gcggcagcgtggcggaaggttgTAAACTgcacctcgaagaacaagaggcc
>
tgcgtcgcaaccgacaattacgTATTCTgagtcttcgggtgaacagagtg
>
gttattttgccgcaggtcagcgTATCGTgaacatcttttccagtgttcag
>
tcattcgttctcttacgctcccTATAGTcgaaacatctgatggcaagaaa
>
taatccacaccgtttgccccgtTAACCTtaccttctcttctgttttatgg
>
tgtggcacaggtcatgttcgggTATACTgctttcccgtcttggttattcc
>
aaaacatttaccccaaaggggcTATTTTctcactcctgatttcaatagtg
>
tattacagagcgttttttatttGAAAATgaatccatgagttcatttcaga
>
ggtagaagctcaacggacaattTATAATggctcagattaaaaaaactaat
>
tgcgcaatctatccgcttacttTATGATgcgcaccagtcacggactgatg
>
acacctgcgtgagttgttcacgTATTTTttcactatgtcttactctctgc
>
tccttttattccacgtttcgctTATCCTagctgaagcgtttcagtcgatt
>
gttcgaggcaggtttgtacggtTATACTtatcttgaagatgagtaagtcc
>
aatttcccatacagagctaaggGATAATgcgtagcgttcacgtaactgga
>
tctccaaaatatattcacgttgTAAATTgtttaacgtcaaatttcccata
>
taacaaaaaaccagtccgcgaaGTTGATagaatcccatcatctcgcacgg
>
acaacagtaaaatcagagcgttTCTGCTtttactgatgtctggcggtcgg
>
ttacatcaacccgcattggtccTACACTgcgcggtaataaagcgaggtaa
>
cgcccctggagaaagcctcgtgTATACTcctcacccttataaaagtccct
>
tacaaagcagcagcaattgcagTAAAATtccgcaccattttgaaataagc
>
caccgggcaacttttagagcacTATCGTggtacaaataatgctgccaccc
>
aaaaactgtcgatgtgggacgaTATAGCagataagaatattgctgagcaa
>
gcacatatcctgttcatttcatTTTGATacacttcatgccgtcaatgagg
>
gtcttttgtactcgtgtactggTACAGTgcaatgcataacaacgcagtcg
>
tgcgataacaggtcgctacgagTAGAATactgccgcttaacgtcgcgtaa
>
tgcattttttacccaaaacgagTAGAATttgccacgtttcaggcgcgggg
>
tgacctgtatcagctttcccgaTAAGTTggaaatccgctggaagctttct
>
gtttctcaataacgaaatttgaTAAAATcccgctctttcataacattatt
>
ataaaaattcatctgtatgcacAATAATgttgtatcaaccaccatatcgg
>
tgattatcttccctgataagacCAGTATttagctgccaattgctacgaaa
>
acccatatccttgaagcggtgtTATAATgccgcgccctcgatatggggat
>
ttgcgttcggtggttaagtatgTATAATgcgcgggcttgtcgtagttgac
>
tgacaccttttcggcatcgcccTAAAATtcggcgtcctcatattgtgtga
>
agacacaaagcgaaagctatgcTAAAACagtcaggatgctacagtaatac
>
gccaaacccgctggagtattgaGATAATtttcagtctgactctcgcaata
>
tgacgcgcgcaggtatttagcaTACAAGgagtaccgatttgagagttggt
>
acacctaaaatgctatttctgcGATAATagcaaccgtttcgtgacaggaa
>
attgtatacttaagctgctgttTAATATgctttgtaacaatttaggctga
>
ggaaggtcaacatcgagcctggCAAACTagcgataacgttgtgttgaaaa
>
taacgccacgcttgaggtaacaGAGATTgttttacctgctggggagtggc
>
tttttctgtaattcgagcatgtCATGTTaccccgcgagcataaaacgcgt
>
tgtcatctttctgacaccttacTATCTTacaaatgtaacaaaaaagttat
>
ttttatgctgacaaaggcacttTTTTCTgtttatctatcaataaattcag
>
ttccaatatcataaaaatcgggTATGTTttagcagagtatgctgctaaag
>
ggtctgataaaacagtgaatgaTAACCTcgttgctcttaagctctggcac
>
gaacttgtggataaaatcacggTCTGATaaaacagtgaatgataacctcg
>
gaacttgtggataaaatcacggTCTGATaaaacagtgaatgataacctcg
>
cgcctgaataataaaagcgtgtTATACTctttccctgcaatgggttccgt
>
attgacggatcatccgggtcgcTATAAGgtaaggatggtcttaacactga
>
tgacttatccgcttcgaagagaGACACTacctgcaacaatcaggagcgca
>
tgacgttttcacattctgttgaCAGATTgtaggtcacgaggggcatttta
>
tgcatcacccgccaatgcgtggCTTAATgcacatcaacggtttgacgtac
>
gttttgtttggcttatcgctggCAAACTgtctgaaatcgcagcaataagg
>
ggacagttaaccgattcagtgcCAGATTtcgcagtatctacaaggtccgg
>
tgcggaaaaaacgcgcgcgaggCAGCATtgactttactaggtcgtgcacg
>
cgtcgcgacctataagtttgggTAATATgtgctggaatttgccctgtctg
>
atctcaggcctgatttgctgctGATTTTtacaatgcatgcctcacgcagg
>
ttgaaaagttcatttccagaccCATTTTtacatcgtagccgatgaggacg
>
agatgtttaccgtggaaaagggTAAAATaacggattaacccaagtataaa
>
gcatcaggacgttcgctattacTTAAATggtatgctgtttgaaaccgaag
>
tatgaaatttaccgtagaacgtGAGCATttattaaaaccgctacaacagg
>
tcagaagacggtggcggagtacTACAAGatcaaagtcgcggatctccttt
>
gcaggaaaaactggtcaccatcGACAATattcagaagacggtggcggagt
>
gcgttctttatcgccaagcgtcTACGATctaacgtacgtgagctggaagg
>
cccgcctcgcggcaggatcgttTACACTtagcgagttctggaaagtcctg
>
agacaaaaattggcttaatcgaTCTAATaaagatccaggacgatccttgc
>
ttgcgctttacccatcagcccgTATAATcctccacccggcgcgccatgct
>
tgactccggagtgtacaattatTACAATccggcctctttaatcacccatg
>
gttttttcaaggtgaagcggttTAAATTcgttctcaaattacagtcagga
>
gacaaaaggcgtgacgatggtcGAAAATggcgctttcgtcagcggggata
>
tggcagtctttctgcctaacgtTTTGTTtatgatatttgcctggcgtcac
>
ttgaaatcacgggggcgcaccgTATAATttgaccgctttttgatgcttga
>
gttttcccaactcagtcaggatTAAACTgtgggtcagcgaaacgtttcgc
>
ttatttttaaaaaacaacaattTATATTgaaattattaaacgcatcataa
>
ttgccagcccacggtcggtcgaCTTACTgtttagtcagttaaataaactg
>
ggaaatttattgcggaaattgaTATATTcacaacgtcacattgcaatttt
>
atatatcaatttccgcaataaaTTTCCTgtcatatagtgaattcaatctc
>
tcacattcaaatgcgattctgcTACAATcctccccccgttcgaagattga
>
ggacgcccggcgtgagtcatgcTAACTTagtgttgacttcgtattaaaca
>
ttacggtcaatcagcaaggtgtTAAATTgatcacgttttagaccattttt
>
ttggcatctctgacctcgctgaTATAATcagcaaatctgtatatataccc
>
gaaaaaatgttaaacccttcggTAAAGTgtctttttgcttcttctgacta
>
tgcatatttttaacacaaaataCACACTtcgactcatctggtacgaccag
>
gcgctttttatccgtaaaaagcTATAATgcactaaaatggtgcaacctgt
>
gcaccaacatggtgcttaatgtTTCCATtgaagcactatattggtgcaac
>
ggtaagaacctgacctcgtgatTACTATttcgccgtgttgacgacatcag
>
ttttcaatatcatttaattaacTATAATgaaccaactgcttacgcggcat
>
tctcgtttttgctcgttaacgaTAAGTTtacagcatgcctacaagcatcg
>
attgacgtccattaacacaatgTTTACTctggtgcctgacatttcaccga
>
tttcggttgacgcccttcggctTTTCCTtcatctttacatctggacgtct
>
gttgacacacctctggtcatgaTAGTATcaatattcatgcagtatttatg
>
tttattacgctcaacgttagtgTATTTTtattcataaatactgcatgaat
>
gcgctgaaacagtcaaagcggtTATGTTcatatgcggatggcgatttaca
>
gatagggataatcgttcattgcTATTCTacctatcgccatgaactatcgt
>
tggacatctgatgagcaatcccTACAATcgccgcgtactttaatttttca
>
gacagtaacttgttacaacctgTAGCATccacttgccggtcctgtgagtt
>
tgcatgaactcgcatgtctccaTAGAATgcgcgctacttgatgccgactt
>
gacgcaatgcgcactaaaagggCATCATttgatgccctttttgcacgctt
>
tgcacaaggcgtgagattggaaTACAATttcgcgccttttgtttttatgg
>
ttacgtgggcggtgattttgtcTACAATcttacccccacgtataatgctt
>
tttgactactgctgtgcctttcAATGCTtgtttctatcgacgacttaata
>
ttcgcgagcgttgcgcaaacgtTTTCGTtacaatgcgggcgaaaaataag
>
cgacattggcaaattttctggtTATCTTcagctatctggatgtctaaacg
>
ttgattttgcattttaaatgagTAGTCTtagttgtgctgaacgaaaagag
>
accacagatgcgtttatgccagTATGGTttgttgaatttttattaaatct
>
ttgacaaccgccccgctcacccTTTATTtataaatgtactacctgcgcta
>
tggaaagaggttgccgtataaaGAAACTagagtccgtttaggtgttttca
>
tttaagccatctcctgatgacgCATAGTcagcccatcatgaatgttgctg
>
tccaaaatcgccttttgctgtaTATACTcacagcataactgtatatacac
>
attcattcaggtcaatttgtgtCATAATtaaccgtttgtgatcgccggta
>
gaatgcattacccggagtgttgTGTAACaatgtctggccaggtttgtttc
>
ggtaatggtacaatcgcgcgttTACACTtattcagaacgatttttttcag
>
acctcaagttaacttgaggaatTATACTccccaacagatgaattaacgaa
>
ataaaatgtggcataaaagatgCATACTgtagtcgagagcgcgtatgcgt
>
tgatcacaaatttaaacactggTAGGGTaaaaaggtcattaactgcccaa
>
agtcatcctccctcactcctgcCATAATtctgatattccaggaaagagag
>
ctgtgatctattcagcaaaaatTTAAATaggattatcgcgagggttcaca
>
gtaagcgttagtttcgataagaTAAACTgagttactaatagtcgaggcag
>
ttgaggtaagcgttagtttcgaTAAGATaaactgagttactaatagtcga
>
ggattaatccttttttcgtgagTAATCTtatcgccagtttggtctggtca
>
cggtagaaatcctcaagcagcaTATGATctcgggtattcggtcgatgcag
>
ttgtcacgctgattggtgtcgtTACAATctaacgcatcgccaatgtaaat
>
gtcatgaatccatggcagtgacCATACTaatggtgactgccattgatgga
>
ttttcaaagcgtaaaattgtggCATTCTtcactgttctataagtaagacg
>
ggcattcacaaatgcgcaggggTAAAACgtttcctgtagcaccgtgagtt
>
tttcctgtagcaccgtgagttaTACTTTgtataacttaaggaggtgcaga
>
ttgcgccgcttctgacgatgagTATAATgccggacaatttgccgggagga
>
gccaccgctttcacagaagtggTAGACTtcgttccttatgaagattctct
>
taaggaaaataattcttatttcGATTGTcctttttacccttctcgttcga
>
tggaaacaattttatttccaatTGTAATgataaccattctcatattaata
>
ggcgtttgtatggcaacgttatTATAATtaacagttgctactccatttaa
>
gaacatcgatctcgtcttgtgtTAGAATtctaacatacggttgcaacaac
>
aagtgtgttgcggagtagatgtTAGAATactaacaaactcgcaaggtgaa
>
tcgccgtatcagcgaataacggTATACTgatctgatcatttaaatttgaa
>
ttgcttctggcaacattaagtcTCAAATtttcaaagggtggaagatggct
>
gccagaagcaatggatacaaggTAGCCTcatgcgttattttccctgcttc
>
ttactgatccgcacgtttatgaTATGCTatcgtactctttagcgagtaca
" >
</form>-->


<!--
<hr >
<a name="globins"></a>
<h2>Globins</h2>
<img  alt="" src="examples/globins.png" ><br >
The end of the B helix through the beginning of the D helix of 34 globins. This 
sequence data was taken from 
<a href="http://www.lecb.ncifcrf.gov/~toms/paper/logopaper/">Sequence Logos: A New Way to Display Consensus Sequences</a>.<br ><br >
<form method="post" action="create.cgi">
<input type="submit" name="cmd_edit" value="Edit Logo" >
<input type="hidden" name="logo_start" value="61" >
<input type="hidden" name="logo_end" value="83" >
<input type="hidden" name="show_xaxis" value="true" >
<input type="hidden" name="show_yaxis" value="true" >
<input type="hidden" name="show_errorbars" value="true" >
<input type="hidden" name="show_fineprint" value="true" >
<input type="hidden" name="scale_width" value="true" >
<input type="hidden" name="sequences" value="
>Lamprey GLOBIN V - SEA LAMPREY
PIVDTGSVA-P------------------LSAAEKTKIRSAWAPVYSTY---ETSGVDILVKFFTSTPAAQEFFPKFKGL
TT-----ADQLKKSA---DVRWHA-ERIINAVNDAVASMDDTEKMS--MKL-RDLSGKH----AKSFQV-----DPQYFK
VLAAVI-AD-TVAAGD--AGFEKLMSM------I---CILLR----S-----A-----Y------------
>Hagfish GLOBIN III - ATLANTIC HAGFISH
PITDHGQPP-T------------------LSEGDKKAIRESWPQIYKNF---EQNSLAVLLEFLKKFPKAQDSFPKFSAK
KS-------HLEQDP---AVKLQA-EVIINAVNHTIGLMDKEAAMK--KYL-KDLSTKH----STEFQV-----NPDMFK
ELSAVF-VS-TMG-GK--AAYEKLFSI------I---ATLLR----S-----T-----YDA----------
>Frog HEMOGLOBIN BETA CHAIN - EDIBLE FROG
----------GS-----------------------DLVSGFWGKV--DA---HKIGGEALARLLVVYPWTQRYFTTFGNL
GSADAIC-----HNA---KVLAHG-EKVLAAIGEGLKHPENLKAHY--AKL-SEYHSNK----LHVDPANFRLLGNVFIT
VLARHF-QH-EFTPELQ-HALEAHFCA------V---GDALA----K-----A-----YH-----------
>African Elephant HEMOGLOBIN BETA CHAIN - AFRICAN ELEPHANT
----------VN-----------------LTAAEKTQVTNLWGKV--NV---KELGGEALSRLLVVYPWTRRFFEHFGDL
STAEAVL-----HNA---KVLAHG-EKVLTSFGEGLKHLDNLKGTF--ADL-SELHCDK----LHVDPENFRLLGNVLVI
VLARHF-GK-EFTPDVQ-AAYEKVVAG------V---ANALA----H-----K-----YH-----------
>Goat HEMOGLOBIN BETA-A CHAIN - GOAT
----------M------------------LTAEEKAAVTGFWGKV--KV---DEVGAEALGRLLVVYPWTQRFFEHFGDL
SSADAVM-----NNA---KVKAHG-KKVLDSFSNGMKHLDDLKGTF--AQL-SELHCDK----LHVDPENFKLLGNVLVV
VLARHH-GS-EFTPLLQ-AEFQKVVAG------V---ANALA----H-----R-----YH-----------
>Primate HEMOGLOBIN BETA CHAIN - HUMAN, CHIMPANZEES, AND GORILLA
----------VH-----------------LTPEEKSAVTALWGKV--NV---DEVGGEALGRLLVVYPWTQRFFESFGDL
STPDAVM-----GNP---KVKAHG-KKVLGAFSDGLAHLDNLKGTF--ATL-SELHCDK----LHVDPENFRLLGNVLVC
VLAHHF-GK-EFTPPVQ-AAYQKVVAG------V---ANALA----H-----K-----YH-----------
>Gibbon HEMOGLOBIN BETA CHAIN - COMMON GIBBON (TENTATIVE SEQUENCE)
----------VH-----------------LTPEEKSAVTALWGKV--NV---DEVGGEALGRLLVVYPWTQRFFESFGDL
STPDAVM-----GNP---KVKAHG-KKVLGAFSDGLAHLDNLKGTF--AQL-SELHCDK----LHVDPENFRLLGNVLVC
VLAHHF-GK-EFTPQVQ-AAYQKVVAG------V---ANALA----H-----K-----YH-----------
>Dog HEMOGLOBIN BETA CHAIN - DOG AND COYOTE
----------VH-----------------LTAEEKSLVSGLWGKV--NV---DEVGGEALGRLLIVYPWTQRFFDSFGDL
STPDAVM-----SNA---KVKAHG-KKVLNSFSDGLKNLDNLKGTF--AKL-SELHCDK----LHVDPENFKLLGNVLVC
VLAHHF-GK-EFTPQVQ-AAYQKVVAG------V---ANALA----H-----K-----YH-----------
>Horse HEMOGLOBIN BETA CHAIN - HORSE
----------VQ-----------------LSGEEKAAVLALWDKV--NE---EEVGGEALGRLLVVYPWTQRFFDSFGDL
SNPGAVM-----GNP---KVKAHG-KKVLHSFGEGVHHLDNLKGTF--AAL-SELHCDK----LHVDPENFRLLGNVLVV
VLARHF-GK-DFTPELQ-ASYQKVVAG------V---ANALA----H-----K-----YH-----------
>Human, Chimp HEMOGLOBIN GAMMA CHAINS - HUMAN AND CHIMPANZEE
----------GH-----------------FTEEDKATITSLWGKV--NV---EDAGGETLGRLLVVYPWTQRFFDSFGNL
SSASAIM-----GNP---KVKAHG-KKVLTSLGDAIKHLDDLKGTF--AQL-SELHCDK----LHVDPENFKLLGNVLVT
VLAIHF-GK-EFTPEVQ-ASWQKMVTA------V---ASALS----S-----R-----YH-----------
>Nile Crocodile HEMOGLOBIN BETA CHAIN - NILE CROCODILE
----------AS-----------------FDPHEKQLIGDLWHKV--DV---AHCGGEALSRMLIVYPWKRRYFENFGDI
SNAQAIM-----HNE---KVQAHG-KKVLASFGEAVCHLDGIRAHF--ANL-SKLHCEK----LHVDPENFKLLGDIIII
VLAAHY-PK-DFGLECH-AAYQKLVRQ------V---AAALA----A-----E-----YH-----------
>Chicken HEMOGLOBIN BETA CHAIN - CHICKEN
----------VH-----------------WTAEEKQLITGLWGKV--NV---AECGAEALARLLIVYPWTQRFFASFGNL
SSPTAIL-----GNP---MVRAHG-KKVLTSFGDAVKNLDNIKNTF--SQL-SELHCDK----LHVDPENFRLLGDILII
VLAAHF-SK-DFTPECQ-AAWQKLVRV------V---AHALA----R-----K-----YH-----------
>NA Opossum HEMOGLOBIN BETA CHAIN - NORTH AMERICAN OPOSSUM
----------VH-----------------LTSEEKNCITTIWSKV--QV---DQTGGEALGRMLVVYPWTTRFFGSFGDL
SSPGAVM-----SNS---KVQAHG-AKVLTSFGEAVKHLDDLKGTY--AKL-SELHCDK----LHVDPENFKMLG-IIVI
CLAEHF-GK-DFTPECV-A--WKLVAG------V---AHALA----H-----K-----YH-----------
>Carp HEMOGLOBIN BETA CHAINS - CARP
----------VE-----------------WTDAERSAIIALWGKL--NP---DELGPEALARCLIVYPWTQRFFASYGNL
SSPAAIM-----GNP---KVAAHG-RTVEGGLMRAIKDMDNIKATY--APL-SVMHSEK----LHVDPDNFRLLADCITV
CAAMKFGPS-GFSPNVQ-EAWQKFLSV------V---VNALK----R-----Q-----YH-----------
>Shark HEMOGLOBIN BETA CHAIN - PORT JACKSON SHARK
----------VH-----------------WSEVELHEITTTWKSI--DK---HSLGAKALARMFIVYPWTTRYFGNLKEF
TA----------CSY---GVKEHA-KKVTGALGVAVTHLGDVKSQF--TDL-SKKHAEE----LHVDVESFKLLAKCFVV
ELGILL-KD-KFAPQTQ-AIWEKYFGV------V---VDAIS----K-----E-----YH-----------
>Shark HEMOGLOBIN ALPHA CHAIN - PORT JACKSON SHARK
----------S-TSTSTSD----------YSAADRAELAALSKVLAQNA---EAFGAEALARMFTVYAATKSYFKDYKDF
TA----------AAP---SIKAHG-AKVVTALAKACDHLDDLKTHL--HKL-ATFHGSE----LKVDPANFQYLSYCLEV
ALAVHL--T-EFSPETH-CALDKFLTN------V---CHELS----S-----R-----YR-----------
>Carp HEMOGLOBIN ALPHA CHAIN - CARP
----------S------------------LSDKDKAAVKIAWAKISPKA---DDIGAEALGRMLTVYPQTKTYFAHWADL
SP----------GSG---PVKHGK-KVIMGAVGDAVSKIDDLVGGL--ASL-SELHASK----LRVDPANFKILANHIVV
GIMFYL-PG-DFPPEVH-MSVDKFFQN------L---ALALS----E-----K-----YR-----------
>Bullfrog HEMOGLOBIN ALPHA CHAIN - BULLFROG TADPOLE
----------S------------------LSASEKAAVLSIVGKIGSQG---SALGSEALTRLFLSFPQTKTYFPHF-DL
TP----------GSA---DLNTHG-GKIINALAGAANHLDDLAGNL--SSL-SDLHAYN----LRVDPGNFPLLAHIIQV
VLATHF-PG-DFTAEVQ-AAWDKFLAL------V---SAVLT----S-----K-----YR-----------
>Nile Crocodile HEMOGLOBIN ALPHA CHAIN - NILE CROCODILE
----------V------------------LSSDDKCNVKAVWSKVAGHL---EEYGAEALERMFCAYPQTKIYFPHF-DL
SH----------GSA---QIRAHG-KKVFAALHEAVNHIDDLPGAL--CRL-SELHAHS----LRVDPVNFKFLAQCVLV
VVAIHH-PG-SLTPEVH-ASLDKFLCA------V---SSVLT----S-----K-----YR-----------
>Ostrich HEMOGLOBIN ALPHA CHAIN - OSTRICH
----------V------------------LSGTDKTNVKGIFSKISSHA---EEYGAETLERMFITYPQTKTYFPHF-DL
HH----------GSA---QIKAHG-KKVANALIEAVNHIDDISGAL--SKL-SDLHAQK----LRVDPVNFKLLGQCFLV
VVAIHH-PS-ALTPEVH-ASLDKFLCA------V---GAVLT----A-----K-----YR-----------
>Kangaroo HEMOGLOBIN ALPHA CHAIN - EASTERN GRAY KANGAROO
----------V------------------LSAADKGHVKAIWGKVGGHA---GEYAAEGLERTFHSFPTTKTYFPHF-DL
SH----------GSA---QIQAHG-KKIADALGQAVEHIDDLPGTL--SKL-SDLHAHK----LRVDPVNFKLLSHCLLV
TFAAHL-GD-AFTPEVH-ASLDKFLAA------V---STVLT----S-----K-----YR-----------
>Armadillo HEMOGLOBIN ALPHA CHAIN - NINE-BANDED ARMADILLO
----------V------------------LSAADKTHVKAFWGKVGGHA---AEFGAEALERMFASFPPTKTYFSHM-DL
SH----------GSA---QVKAHG-KKVADALTLAVGHLDDLPGAL--STL-SDLHAHK----LRVDPVNFKFLSHCLLV
TLACHL-PD-DFTPAVH-ASMDKFMAG------V---STVLV----S-----K-----YR-----------
>Horse HEMOGLOBIN ALPHA CHAINS - HORSE
----------V------------------LSAADKTNVKAAWSKVGGHA---GEYGAEALERMFLGFPTTKTYFPHF-DL
SH----------GSA---QVKAHG-KKVGDALTLAVGHLDDLPGAL--SNL-SDLHAHK----LRVDPVNFKLLSHCLLS
TLAVHL-PN-DFTPAVH-ASLDKFLSS------V---STVLT----S-----K-----YR-----------
>Primate HEMOGLOBIN ALPHA CHAIN - HUMAN AND CHIMPANZEES
----------V------------------LSPADKTNVKAAWGKVGAHA---GEYGAEALERMFLSFPTTKTYFPHF-DL
SH----------GSA---QVKGHG-KKVADALTNAVAHVDDMPNAL--SAL-SDLHAHK----LRVDPVNFKLLSHCLLV
TLAAHL-PA-EFTPAVH-ASLDKFLAS------V---STVLT----S-----K-----YR-----------
>Macaque HEMOGLOBIN ALPHA CHAIN - RHESUS MACAQUE AND JAPANESE MACAQUE
----------V------------------LSPADKSNVKAAWGKVGGHA---GEYGAEALERMFLSFPTTKTYFPHF-DL
SH----------GSA---QVKGHG-KKVADALTLAVGHVDDMPNAL--SAL-SDLHAHK----LRVDPVNFKLLSHCLLV
TLAAHL-PA-EFTPAVH-ASLDKFLAS------V---STVLT----S-----K-----YR-----------
>Badger HEMOGLOBIN ALPHA CHAIN - EURASIAN BADGER
----------V------------------LSPADKANIKATWDKIGGHA---GEYGGEALERTFASFPTTKTYFPHF-DL
SH----------GSA---QVKGHG-KKVADALTNAVAHLDDLPGAL--SAL-SDLHAYK----LRVDPVNFKLLSHCLLV
TLACHH-PA-EFTPAVH-ASLDKFLSS------V---STVLT----S-----K-----YR-----------
>Ind Elephant HEMOGLOBIN ALPHA CHAIN - INDIAN ELEPHANT
----------V------------------LSDKDKTNVKATWSKVGDHA---SDYVAEALERMFFSFPTTKTYFPHF-DL
SH----------GSG---QVKGHG-KKVGEALTQAVGHLDDLPSAL--SAL-SDLHAHK----LRVDPVNFKLLSHCLLV
TLSSHQ-PT-EFTPEVH-ASLDKFLSN------V---STVLT----S-----K-----YR-----------
>Hyrax HEMOGLOBIN ALPHA CHAIN - ABYSSINIAN HYRAX
----------V------------------LSAADKNNVKGAWEKVGTHA---GEYGAEALERMFLSFPTTKTYFPHF-DL
TH----------GSA---QVKAHG-QKVGAALTKAVGHLDDLPNAL--SDL-SDLHAHK----LRVDPVNFKLLSHCLLV
TLSRHL-PEQEFTPAVH-ASLDKFFSN------V---STVLT----S-----K-----YR-----------
>Tuna MYOGLOBIN - YELLOWFIN TUNA
----------A----------------------DFDAVLKCWGPVEADY---TTMGGLVLTRLFKEHPETQKLFPKFAGI
-A-----QADIAGNA---AISAHG-ATVLKKLGELLKAKGSHAAIL--KPL-ANSHATK----HKIPINNFKLISEVLVK
VMHEK---A-GLDAGGQ-TALRNVMGI------I---IADLE----ANYKELG-----FSG----------
>Shark MYOGLOBIN - PORT JACKSON SHARK
----------T----------------------EWEHVNKVWAVVEPDI---PAVGLAILLRLFKEHKETKDLFPKFKEI
-P-----VQQLGNNE---DLRKHG-VTVLRALGNILKQKGKHSTNV--KEL-ADTHINK----HKIPPKNFVLITNIAVK
VLTEMY-PS-DMTGPMQ-ESFSKVFTV------I---CSDLE----TLYKEAN-----FQG----------
>Turtle MYOGLOBIN - MAP TURTLE
----------G------------------LSDDEWHHVLGIWAKVEPDL---SAHGQEVIIRLFQVHPETQERFAKFKNL
KT-----IDELRSSE---EVKKHG-TTVLTALGRILKLKNNHEPEL--KPL-AESHATK----HKIPVKYLEFICEIIVK
VIAEKH-PS-DFGADSQ-AAMRKALEL------F---RNDMA----SKYKEFG-----FQG----------
>Chicken MYOGLOBIN - CHICKEN
----------G------------------LSDQEWQQVLTIWGKVEADI---AGHGHEVLMRLFHDHPETLDRFDKFKGL
KT-----EPDMKGSE---DLKKHG-QTVLTALGAQLKKKGHHEADL--KPL-AQTHATK----HKIPVKYLEFISEVIIK
VIAEKH-AA-DFGADSQ-AAMKKALEL------F---RDDMA----SKYKEFG-----FQG----------
>Dog MYOGLOBIN - DOG, BAT-EARED FOX, AFRICAN HUNTING DOG, AND CAPE FOX
----------G------------------LSDGEWQIVLNIWGKVETDL---AGHGQEVLIRLFKNHPETLDKFDKFKHL
KT-----EDEMKGSE---DLKKHG-NTVLTALGGILKKKGHHEAEL--KPL-AQSHATK----HKIPVKYLEFISDAIIQ
VLQSKH-SG-DFHADTE-AAMKKALEL------F---RNDIA----AKYKELG-----FQG----------
>Badger MYOGLOBIN - EURASIAN BADGER
----------G------------------LSDGEWQLVLNVWGKVEADL---AGHGQEVLIRLFKGHPETLEKFDKFKHL
KS-----EDEMKGSE---DLKKHG-NTVLTALGGILKKKGHQEAEL--KPL-AQSHATK----HKIPVKYLEFISDAIAQ
VLQSKH-PG-NFAAEAQ-GAMKKALEL------F---RNDIA----AKYKELG-----FQG----------
>Dolphin MYOGLOBIN - SADDLEBACK DOLPHIN
----------G------------------LSDGEWQLVLNVWGKVEADV---AGHGQDILIRLFKGHPETLEKFDKFKHL
KT-----EADMKASE---DLKKHG-DTVLTALGAILKKKGHHDAEL--KPL-AQSHATK----HKIPIKYLEFISEAIIH
VLHSRH-PA-QFGADAQ-GAMNKALEL------F---RKDIA----AKYKELG-----FHG----------
>Horse, Zebra MYOGLOBIN - HORSE AND PLAINS ZEBRA
----------G------------------LSDGEWQQVLNVWGKVEADI---AGHGQEVLIRLFTGHPETLEKFDKFKHL
KT-----EAEMKASE---DLKKHG-TVVLTALGGILKKKGHHEAEL--KPL-AQSHATK----HKIPIKYLEFISDAIIH
VLHSKH-PG-NFGADAQ-GAMTKALEL------F---RNDIA----AKYKELG-----FQG----------
>African Elephant MYOGLOBIN - AFRICAN ELEPHANT
----------G------------------LSDGEWELVLKTWGKVEADI---PGHGEFVLVRLFTGHPETLEKFDKFKHL
KT-----EGEMKASE---DLKKQG-VTVLTALGGILKKKGHHEAEI--QPL-AQSHATK----HKIPIKYLEFISDAIIH
VLQSKH-PA-EFGADAQ-AAMKKALEL------F---RNDIA----AKYKELG-----FQG----------
>Aardvark MYOGLOBIN - AARDVARK
----------G------------------LSDAEWQLVLNVWGKVEADI---PGHGQDVLIRLFKGHPETLEKFDRFKHL
KT-----EDEMKASE---DLKKHG-TTVLTALGGILKKKGQHEAEI--QPL-AQSHATK----HKIPVKYLEFISEAIIQ
VIQSKH-SG-DFGADAQ-GAMSKALEL------F---RNDIA----AKYKELG-----FQG----------
>Human MYOGLOBIN - HUMAN
----------G------------------LSDGEWQLVLNVWGKVEADI---PGHGQEVLIRLFKGHPETLEKFDKFKHL
KS-----EDEMKASE---DLKKHG-ATVLTALGGILKKKGHHEAEI--KPL-AQSHATK----HKIPVKYLEFISECIIQ
VLQSKH-PG-DFGADAQ-GAMNKALEL------F---RKDMA----SNYKELG-----FQG----------
>Macaque MYOGLOBIN - CRAB-EATING MACAQUE (TENTATIVE SEQUENCE)
----------G------------------LSDGEWQLVLNVWGKVEADI---PSHGQEVLIRLFKGHPETLEKFDKFKHL
KS-----EDEMKASE---DLKKHG-VTVLTALGGILKKKGHHEAEI--KPL-AQSHATK----HKIPVKYLELISESIIQ
VLQSKH-PG-DFGADAQ-GAMNKALEL------F---RNDMA----AKYKELG-----FQG----------
>NA Opossum MYOGLOBIN - NORTH AMERICAN OPOSSUM
----------G------------------LSDGEWQLVLNAWGKVEADI---PGHGQEVLIRLFKGHPETLEKFDKFKHL
KS-----EDEMKASE---DLKKHG-ATVLTALGNILKKKGNHEAEL--KPL-AQSHATK----HKISVQFLEFISEAIIQ
VIQSKH-PG-DFGGDAQ-AAMGKALEL------F---RNDMA----AKYKELG-----FQG----------
>Earthworm GLOBIN AIII - COMMON EARTHWORM
---------KK------------------QCGVLEGLKVKSEWGRAYGS---GHDREAFSQAIWRATFAQVPESRSLFKR
VH-----GDH-TSDP---AFIAHA-ERVLGGLDIAISTLDQPATLK--EEL-DHLQVQHEG--RKIPDNYFDAFKTAILH
VVAAQL-GE-RCYSNN--EEIHDAIACDGFARVL---PQVLE----R-----G-----IKGHH--------
> SMALL CHAIN - TYLORRHYNCHUS HETEROCHAETUS
----------T------------------DCGILQRIKVKQQWAQVYSV---GESRTDFAIDVFNNFFRTNPD-RSLFNR
VN-----GDN-VYSP---EFKAHM-VRVFAGFDILISVLDDKPVLD--QAL-AHYAAFH----KQFGTIPFKAFGQTMFQ
TIAEHI--------HG--ADIGAWRAC------Y---AEQIV----T-----G-----ITA----------
>BloodwormGLOBIN, MAJOR MONOMERIC COMPONENT - BLOODWORM
----------G------------------LSAAQRQVIAATWKDIAGND---NGAGVGKDCLI--KHLSAHPQMAAVFGF
SG-----ASD-PAVA---DLGAKV-LAIGVAVSHLGDGKMVAQMKA--VGV-RHKGYGN----KHIKGQYFEPLGASLLS
AMEHRI-GG-KMNAAA-KDAWAAAYAD------I---SGALI----S-----G-----LQS----------
>Whelk GLOBIN - WHELK
----------G------------------LDGAQKTALKESWKVLGADGPTMMKNGSLLFGLLFKTYPDTKKHFKHFDDA
TF-----AAM-DTTG---VGKAHG-VAVFSGLGSMICSIDDDDCV---GLA-KKLSRNH--LARGVSAADF-KLLEAVFK
FLDEAT-QR-KATDAQ-KDADGALLTM------L---IKA------------H-----V------------
>Snail GLOBIN - WATER SNAIL
----------S------------------LQPASKSALASSWKTLAKDAATIQNNGATLFSLLFKQFPDTRNYFTHFGNM
SD-----AEM-KTTG---VGKAHS-MAVFAGIGSMIDSMDDADCMN--GLA-LKLSRNH--IQRKIGASRFGEMRQVFPN
FLDEAL-GG-GASGDV-KGAWDALLAY------LQDNKQA------------Q-----A----L-------
>Clam GLOBIN I - BLOOD CLAM
----------P--------SVQGAAAQ--LTADVKKDLRDSWKVIGSDK---KGNGVALMTTLFADNQETIGYFKRLGNV
SQ-----GM---AND---KLRGHS-ITLMYALQNFIDQLDNTDDLV--CVV-EKFAVNH--ITRKISAAEFGKINGP---
-IKKVL-AS-KNFGDK-YANAWAKLVA------V---VQA------------A-----L------------
>Midge larvaGLOBIN CTT-II BETA - MIDGE LARVA
----------A------------------PLSADEASLV---RGSWAQV---KHSEVDILYYIFKANPDIMAKFPQFAGK
DL-----ETL-KGTGQFATHAGRI-VGFVSEIVALMGNSANMPAME--TLI-KDMAANH--KARGIPKAQFNEFRASLVS
YLQSKV----SWNDSL-GAAWTQGLDN------V---FNMMF----S-----Y-----L------------
>Midge larva GLOBINS CTT-I AND CTT-IA - MIDGE LARVA
----------G------------------P-SGDQIAAA---KASWNTV---KNNQVDILYAVFKANPDIQTAFSQFAGK
DL-----DSI-KGTPDFSKHAGRV-VGLFSEVMDLLGNDANTPTIL--AKA-KDFGKSH--KSRASP-AQLDNFRKSLVV
YLKGAT----KWDSAV-ESSWAPVLDF------V---FSTLK----N-----E-----L------------
>Bacteria BACTERIAL HEMOGLOBIN - VITREOSCILLA SP
-----------------------------MLDQQTINII---KATVPVL---KEHGVTITTTFYKNLFAKHPEVRPLFDM
GR-----Q---ESLEQ-------P-KALAMTVLAAAQNIENLPAIL--PAV-KKIAVKH--CQAGVAAAHYPIVGQELLG
AIKEVL-GD-AATDDI-LDAWGKAYGV------I---ADVFI----Q-----VEADLYA-----Q-AVE--
>P andersonii ONLEGUME HEMOGLOBIN I - PARASPONIA ANDERSONII
----------V----------------NKVFTEEQEALV---VKAWAVM---KKNSAELGLQFLK-IFEIAPSAKNLFSY
LK-----DSP-VPLEQNPKLKPHA-TTFVMTTESAVQLRKAGKVTVK-ESDLKRIGAIH--FKTGVVNEHFEVTRFALLE
TIKEAV-PE-MWSPEM-KNAWGVAYDQ------L---VAAIK----F-----E-----M-----KPSST--
>Yellow Lupin LEGHEMOGLOBIN I - YELLOW LUPIN
----------G------------------VLTDVQVALV---KSSFEEF---NANIPKNTHRFFTLVLEIAPGAKDLFSF
LK-----GSS-EVPQNNPDLQAHAGKVFKLTYEAAIQLEVNGAVAS--DATLKSLGSVH--VSKGVVDAHFPVVKEAILK
TIKEVV-GD-KWSEEL-NTAWTIAYDE------L---AIIIK----K-----E-----M-----K-DAA--
>Garden Pea LEGHEMOGLOBIN I - GARDEN PEA
----------G-------------------FTDKQEALV---NSSSE-F---KQNLPGYSILFYTIVLEKAPAAKGLFSF
LK-----DTA-GVE-DSPKLQAHAEQVFGLVRDSAAQLRTKGEVVL-GNATL---GAIH--VQKGVTNPHFVVVKEALLQ
TIKKAS-GN-NWSEEL-NTAWEVAYDG------L---ATAIKKAMKT---------------------A--
>Broad Bean LEGHEMOGLOBIN I - BROAD BEAN
----------G-------------------FTEKQEALV---NSSSQLF---KQNPSNYSVLFYTIILQKAPTAKAMFSF
LK-----DSA-GVV-DSPKLGAHAEKVFGMVRDSAVQLRATGEVVL--DGKD---GSIH--IQKGVLDPHFVVVKEALLK
TIKEAS-GD-KWSEEL-SAAWEVAYDG------L---ATAIK----A---------------------A--
>Soybean LEGHEMOGLOBIN C1 - SOYBEAN
----------G------------------AFTEKQEALV---SSSFEAF---KANIPQYSVVFYNSILEKAPAAKDLFSF
LA-----NGV-DPT--NPKLTGHAEKLFALVRDSAGQLKTNGTVVA--DAAL---VSIH--AQKAVTDPQFVVVKEALLK
TIKEAV-GG-NWSDEL-SSAWEVAYDE------L---AAAIK----K---------------------A--
>Kidney Bean LEGHEMOGLOBIN A - KIDNEY BEAN
----------G------------------AFTEKQEALV---NSSWEAF---KGNIPQYSVVFYTSILEKAPAAKNLFSF
LA-----NGV-DPT--NPKLTAHAESLFGLVRDSAAQLRANGAVVA--DAAL---GSIH--SQKGVSNDQFLVVKEALLK
TLKQAV-GD-KWTDQL-STALELAYDE------L---AAAIK----K---------------------AYA
" >
</form>
<br >
<br >-->

<!--


<hr >
<a name="HTH"></a>
<h2>HTH Proteins</h2>
<img alt="" src="examples/hth.png" > <br >
Helix-Turn-Helix DNA binding motifs found by the
Gibbs
sampling system. Compared to the <a href="#CAP_HTH">CAP HTH logo</a> 
there is much less sequence conservation within the DNA binding helix (11-17),
as might be expected for a diverse sample of proteins.
<form method="post" action="create.cgi">
<input type="submit" name="cmd_edit" value="Edit Logo" >
<input type="hidden" name="logo_title" value ="Helix-Turn-Helix Motifs" >
<input type="hidden" name="first_index" value ="-11" >
<input type="hidden" name="logo_start" value ="1" >
<input type="hidden" name="logo_end" value ="17" >
<input type="hidden" name="yaxis_scale" value ="2.0" >
<input type="hidden" name="show_xaxis" value="true" >
<input type="hidden" name="show_yaxis" value="true" >
<input type="hidden" name="show_errorbars" value="true" >
<input type="hidden" name="show_fineprint" value="true" >
<input type="hidden" name="scale_width" value="true" >
<input type="hidden" name="sequences" value=">A25944 DNA-directed RNA polymerase sigma-37 chain - Bacillu 223-240
iidltyiqnk SQKETGDILGISQMHVSR lqrkavkklr  
>A28627 spoIIIC protein - Bacillus subtilis  94-111
rfgldlkkek TQREIAKELGISRSYVSR iekralmkmf  
>A32837 *Transcriptional activator nahR - Pseudomonas putida  22-39
vvfnqllvdr RVSITAENLGLTQPAVSN alkrlrtslq   
>A23450 Antennapedia homeotic protein - Fruit fly (Drosophil 326-343
fhfnryltrr RRIEIAHALCLTERQIKI wfqnrrmkwk  
>B26499 Regulatory protein ntrC - Bradyrhizobium sp. 449-466
ltaalaatrg NQIRAADLLGLNRNTLRK kirdldiqvy  
>BVECDA dicA protein - Escherichia coli | 1551.0 1.0 1.0 1.0  22-39
iryrrknlkh TQRSLAKALKISHVSVSQ wergdseptg   
>C29010 Mercuric resistance operon regulatory merD protein -   5-22
------mnay TVSRLALDAGVSVHIVRD yllrgllrpv   
>DNECFS DNA-binding protein fis - Escherichia coli | 928.0 1  73-90
ldmvmqytrg NQTRAALMMGINRGTLRK klkkygmn--     
>JEBY1 Mating hormone a1 - Yeast (Saccharomyces cerevisiae)   99-116
frrkqslnsk EKEEVAKKCGITPLQVRV wfinkrmrsk  
>QCBP2L Regulatory protein cII - Phage lambda | 1559.0 2.0 1  25-42
sallnkiaml GTEKTAEAVGVDKSQISR wkrdwipkfs   
>QRECC cAMP receptor protein (CAP) - Escherichia coli | 1507 169-186
thpdgmqiki TRQEIGQIVGCSRETVGR ilkmledqnl  
>RCBPL Regulatory protein cro - Phage lambda | 1555.0 1.0 1.  15-32
itlkdyamrf GQTKTAKDLGVYQSAINK aihagrkifl   
>RGBP22 Regulatory protein cro - Phage P22 | 1556.0 1.0 1.0   12-29
ykkdvidhfg TQRAVAKALGISDAAVSQ wkevipekda   
>RGECA Arabinose operon regulatory protein - Escherichia col 196-213
isdhladsnf DIASVAQHVCLSPSRLSH lfrqqlgisv  
>RGECF Regulatory protein fnr - Escherichia coli | 1507.0 1. 196-213
fsprefrltm TRGDIGNYLGLTVETISR llgrfqksgm  
>RGECH Heat shock regulatory protein - Escherichia coli | 30 252-269
arwldednks TLQELADRYGVSAERVRQ leknamkklr  
>RGKBCP Nitrogen assimilation regulatory protein - Klebsiell 444-461
lttalrhtqg HKQEAARLLGWGRNTLTR klkelgme--    
>RPECCT cyt repressor - Escherichia coli | 1291.0 3.0 1.0 1.  11-28
mkakkqetaa TMKDVALKAKVSTATVSR almnpdkvsq   
>RPECDO Deo operon repressor - Escherichia coli | 1536.0 1.0  23-40
lqelkrsdkl HLKDAAALLGVSEMTIRR dlnnhsapvv   
>RPECG gal repressor - Escherichia coli | 1291.0 4.0 1.0 1.0   3-20
--------ma TIKDVARLAGVSVATVSR vinnspkase   
>RPECL lac repressor - Escherichia coli | 1291.0 2.0 1.0 1.0   5-22
------mkpv TLYDVAEYAGVSYQTVSR vvnqashvsa   
>RPECTN TetR repressor - Escherichia coli transposon Tn10 |   26-43
llnevgiegl TTRKLAQKLGVEQPTLYW hvknkralld   
>RPECW trp repressor - Escherichia coli | 1534.0 1.0 1.0 1.0  67-84
iveellrgem SQRELKNELGAGIATITR gsnslkaapv   
>S02513 Regulatory protein nifA - Klebsiella pneumoniae 495-512
liaalekagw VQAKAARLLGMTPRQVAY riqimditmp  
>S07337 *spoIIG protein - Bacillus subtilis 205-222
rfglvgeeek TQKDVADMMGISQSYISR lekriikrlr  
>S07958 *DNA-invertase - Escherichia coli 160-177
qagrliaagt PRQKVAIIYDVGVSTLYK tfpagdk---     
>S08477 Regulatory protein purR - Escherichia coli   3-20
-------ma TIKDVAKRANVSTTTVSH vinktrfvae-   
>S09205 *ebgR protein - Escherichia coli   3-20
--------ma TLKDIAIEAGVSLATVSR vlnddptlnv   
>S11945 *lexA repressor - Escherichia coli  27-44
dhisqtgmpp TRAEIAQRLGFRSPNAAE ehlkalarkg   
>Z1BPC2 Regulatory protein cI - Phage P22 | 1559.0 1.0 1.0 1  25-42
ssilnriair GQRKVADALGINESQISR wkgdfipkmg
" >
</form>

<br ><br >
<hr >
<a name="splice"></a>
<h2>Human Splice Sites</h2>

<img   alt="" src="examples/exon-intron.png" ><img   alt="" src="examples/intron-exon.png" > <br >
<br >
These logos show a small sample of Human intron-exon 
splice boundaries. Sequences of experimentally 
confirmed genes were extracted from 
<a href="http://mcb.harvard.edu/gilbert/EID/">EID: the Exon-Intron
database</a>.
Additional discussion of the features in this logo can be found in 
the paper
<a href="http://www.lecb.ncifcrf.gov/~toms/paper/splice/">
Features of spliceosome evolution...</a>-->
<!--
<form method="post" action="create.cgi">
<input type="submit" name="cmd_edit" value="Edit Logo" >
Exon-Intron (Donor) Sites
<input type="hidden" name="logo_title" value="exon | intron" >
<input type="hidden" name="first_index" value="-11" >
<input type="hidden" name="logo_start" value="-6" >
<input type="hidden" name="logo_end" value="8" >
<input type="hidden" name="show_xaxis" value="true" >
<input type="hidden" name="show_yaxis" value="true" >
<input type="hidden" name="show_errorbars" value="true" >
<input type="hidden" name="show_fineprint" value="true" >
<input type="hidden" name="scale_width" value="true" >
<input type="hidden" name="sequences" value="
> 19082_AF115399
GGATCGACCCTgtaagtttt
> 45328_AB000381
GCGCGCTCAGTgtaagtatc
> 45328_AB000381
AATCTCCATTCgtaagtacc
> 45330_AB001517
ACTGGACGCTGgtaaggact
> 45331_AB001517
TCGCTTACCGGgtgagcgcg
> 45331_AB001517
GACCTTAAAAAgtaagtatg
> 45331_AB001517
CGTCGATGAAGgtacttgcc
> 45331_AB001517
CCTGATGGCAGgtaaggggg
> 45331_AB001517
GATGACTCCAGgtgcggcct
> 45331_AB001517
ACAGCCTGGACgtatgtccc
> 45331_AB001517
CGGCTGGCCAAgtaggtctc
> 45331_AB001517
CACTCCCTGAGgtaagcctt
> 45331_AB001517
TGGCTGTTCAGgtttgtccc
> 45331_AB001517
ACGACGGCAAGgtaggctcc
> 45331_AB001517
GACCTTCACAGgtgatgttt
> 45331_AB001517
GGCTCCTTGATgtaagcacc
> 45331_AB001517
GACCTCTGATGgtgagcacg
> 45331_AB001517
GCCAAGGGGAAgtgagtgtc
> 45331_AB001517
ACGCCATGGAGgtgagccgc
> 45331_AB001517
CGTCAGGAAAGgtgagcaga
> 45331_AB001517
CTCTCCCACTGgtgagcact
> 45331_AB001517
CAGGGGCGAGAgtgagttgg
> 45331_AB001517
CTGAAGTCCAGgtagagggt
> 45331_AB001517
CTGTCGAAACTgtacgtgtg
> 45332_AB001517
GGGTCGCGCTGgtgagtgga
> 45332_AB001517
GAGGCCTCGGCgtaagtcct
> 45332_AB001517
GGCGAGAGCAGgtgtggggg
> 45332_AB001517
GCTAAAAACCTgtgcgtatt
> 45332_AB001517
AAGCCCATCGGgtgtgtaca
> 45333_AB001517
GGGTCGCGCTGgtgagtgga
> 45333_AB001517
GAGGCCTCGGCgtaagtcct
> 45333_AB001517
GGCGAGAGCAGgtgtggggg
> 45333_AB001517
GCTAAAAACCTgtgcgtatt
> 45334_AB001523
CATCGTCACCTgtgagtgcc
> 45334_AB001523
GAATGGAGAAGgtatgagtt
> 45334_AB001523
CAGAGTGCTGTgtgagtacc
> 45334_AB001523
CAGAGTGACAGgtaagtgta
> 45334_AB001523
TCATGGTTCAGgtacttgac
> 45334_AB001523
CGGGGCCGGGGgtgagtagt
> 45334_AB001523
AGCTCTTAGAAgtgagtcgg
> 45334_AB001523
CCACAGAAAAGgtgcctacc
> 45334_AB001523
ACCAGAAACAGgtacttttt
> 45334_AB001523
AACACTACTTAgtaagtatt
> 45334_AB001523
GAGTTTTACATgtaattgat
> 45334_AB001523
CAAATTGAAAAgtatccttt
> 45334_AB001523
AGACAGCCCAGgtaagacca
> 45334_AB001523
TCAGGACTCAGgtatgcgtt
> 45334_AB001523
GCCGCTGGCTGgtgagtggg
> 45334_AB001523
CAACACGAGAGgtgaggtgc
> 45334_AB001523
CAGACCACAAAgtgagtagg
> 45334_AB001523
TCAGGAACACGgtaacggag
> 45334_AB001523
AGTCCCAGCAGgtaaacatt
> 45334_AB001523
AAAATTTTTTTgtaagtgat
> 45334_AB001523
TATGTATGAAGgtaggtggt
> 45334_AB001523
ACTGGACGCTGgtaaggact
> 45335_AB001523
TCGCTTACCGGgtgagcgcg
> 45337_AB00189S
TGTGGTACCTGgtgagtagg
> 45337_AB00189S
CCCCAAATTATgtaagtcaa
> 45337_AB00189S
AATGAAAATAAgtacgtcac
> 45338_AB00189S
TGTGGTACCTGgtgagtagg
> 45338_AB00189S
CCCCAAATTATgtaagtcaa
> 45338_AB00189S
AATGAAAATAAgtacgtcac
> 45338_AB00189S
GGAGAAGCAAGgtcagtggc
> 45339_AB00189S
TGTGGTACCTGgtgagtagg
> 45339_AB00189S
CCCCAAATTATgtaagtcaa
> 45339_AB00189S
AATGAAAATAAgtacgtcac
> 45339_AB00189S
GGAGAAGCAAGgtcagtggc
> 45340_AB00189S
TGTGGTACCTGgtgagtagg
> 45340_AB00189S
CCCCAAATTATgtaagtcaa
> 45340_AB00189S
AATGAAAATAAgtacgtcac
> 45341_AB00189S
TGTGGTACCTGgtgagtagg
> 45341_AB00189S
CCCCAAATTATgtaagtcaa
> 45341_AB00189S
AATGAAAATAAgtacgtcac
> 45341_AB00189S
AAGACCAGCAGgtaatgcat
> 45342_AB00189S
TGTGGTACCTGgtgagtagg
> 45342_AB00189S
CCCCAAATTATgtaagtcaa
> 45342_AB00189S
AATGAAAATAAgtacgtcac
> 45342_AB00189S
AGATTACACAGgtaatgagc
> 45342_AB00189S
AAGACCAGCAGgtaatgcat
> 45342_AB00189S
GTGTGTCGAAGgtacggtcc
> 45342_AB00189S
GTGCAGCAACGgtgagcagc
> 45343_AB00189S
TGTGGTACCTGgtgagtagg
> 45343_AB00189S
CCCCAAATTATgtaagtcaa
> 45343_AB00189S
AATGAAAATAAgtacgtcac
> 45343_AB00189S
AAGACCAGCAGgtaatgcat
> 45343_AB00189S
GTGTGTCGAAGgtacggtcc
> 45343_AB00189S
GTGCAGCAACGgtgagcagc
> 45344_AB00189S
TGTGGTACCTGgtgagtagg
> 45344_AB00189S
CCCCAAATTATgtaagtcaa
> 45344_AB00189S
AATGAAAATAAgtacgtcac
> 45344_AB00189S
AGATTACACAGgtaatgagc
> 45344_AB00189S
AAGACCAGCAGgtaatgcat
> 45345_AB002059
TATGTGGTAGGgtaagagag
> 45345_AB002059
AGCCACCTCAGgtgggggcc
> 45345_AB002059
GATGCCCAGAGgtgagttta
> 45345_AB002059
ACACAGCCACGgtaactgtg
> 45345_AB002059
GTTGTGCCCTCgtaagtgtc
> 45345_AB002059
AACTTCTCTAAgtaagcaga
> 45345_AB002059
TGGCGTTGCTGgtgggtccc" >
</form>-->


<!--
<form method="post" action="create.cgi">
<input type="submit" name="cmd_edit" value="Edit Logo" >
Intron-Exon (Acceptor) Sites
<input type="hidden" name="logo_title" value="intron | exon" >
<input type="hidden" name="first_index" value="-21" >
<input type="hidden" name="logo_start" value="-20" >
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<input type="hidden" name="sequences" value="
> 19082_AF115399
ttctctgaaatatgaatttagACTGGTACTTATCATGGAG
> 45328_AB000381
gcctgctttctcccctctcagGGACTTACAGTTTGAGATG
> 45328_AB000381
cattgctgcttctttttttagGCATAAATTCTCGTGAACT
> 45330_AB001517
aacttcctgtgtgttttgcagACAGCTGGATAGAAAACGA
> 45331_AB001517
acaattttgttttcttcacagTTTTCAAATTTGCTGGGTA
> 45331_AB001517
tgtggtttttgtctttatcagCAACAAATCTGACACGCTG
> 45331_AB001517
gtgacctctggcgtcctgcagGGGGCGATGCGCTGCTGGT
> 45331_AB001517
atgtccgcgttccttccatagGAAGTTTGTTGTCACAAAG
> 45331_AB001517
tgccatctccctcttttccagGTGCTTTGTGGTTGGGAGC
> 45331_AB001517
accctgtgcttccccttgcagCTGTACTCACTCAGCCAGG
> 45331_AB001517
tcttctctctcgtcaattcagGTACTTCTTCAATAAAGAA
> 45331_AB001517
ttacaggcccgttctctgcagCATTTCAGATCAGAGCATC
> 45331_AB001517
cagcttcccccgtgtgcacagGCCTGGGCCAGCTGCTGGT
> 45331_AB001517
gcccctcctgtcctgcctcagGTCAAGGTGTGGAACACCC
> 45331_AB001517
gaccttgcctcttctctgcagGTACCGAAACTTCCGCACC
> 45331_AB001517
cgcctccttgctctacggtagGTTTTGTCTGGACACGAAG
> 45331_AB001517
ttactttgcatctctgtttagCTCTGGCTGTGACTTTTCG
> 45331_AB001517
ccatgtctcctctccacccagGGCCTTCACCGCCCTGTGC
> 45331_AB001517
ccactgcttttgctgttctagGAATTTTTGAACCGAAGAA
> 45331_AB001517
taacggttcttttttccccagGTGACATGAGTTCTCGGCA
> 45331_AB001517
aagcactgcttaatttcccagGGCGCTGCTGGGCGGCCAC
> 45331_AB001517
tgattttttctccttttgcagTTGAAGTGGTCACCTCCTC
> 45331_AB001517
cttagggagtctccctttcagAGCCGGGACGCTGCTGCCT
> 45331_AB001517
catcccctgtgtgattgacagCTGTAGCTGGAACCACTAT
> 45332_AB001517
cagctcccgctcctctcgcagGTGCTGTCTGGATGCGGAG
> 45332_AB001517
ctctggttttcccccgtgcagGATCCTGGTGCACCTGAGC
> 45332_AB001517
ttgccctgtgctctttcccagGAATGTTTTGACCGAGTCT
> 45332_AB001517
aggccttttgtctcccggtagGAGCACGTTTGCCGTGGAC
> 45332_AB001517
cgtgttcttttcgcctttcagCTTGTGCTGCATTGCACCT
> 45333_AB001517
cagctcccgctcctctcgcagGTGCTGTCTGGATGCGGAG
> 45333_AB001517
ctctggttttcccccgtgcagGATCCTGGTGCACCTGAGC
> 45333_AB001517
ttgccctgtgctctttcccagGAATGTTTTGACCGAGTCT
> 45333_AB001517
cgtgttcttttcgcctttcagCTTGTGCTGCATTGCACCT
> 45334_AB001523
atttctttcttcccttcatagGTGCTGGAGATCAGAATTT
> 45334_AB001523
acttcaaacaattgtttacagGTCCTATGGCCGGGCTCCG
> 45334_AB001523
cagtgacttgtttgtttttagGATACCGAAGTGTATAAAG
> 45334_AB001523
agtctgttcatgtctttgcagGTGTGTTGTGCTCTCCGAC
> 45334_AB001523
aaacgtatcttgggcgaatagGAGGAGCTTGCCTTTGTTT
> 45334_AB001523
tcatgatgtgtgtttgtttagATGGTGCCAACTGGCTGAC
> 45334_AB001523
ttcgcatttgcacccccacagGTCTCTGTCCCACCTGGTG
> 45334_AB001523
attgtggatttatcttaacagTTAAAGTCCTTGGGCTATC
> 45334_AB001523
tctcgtttctttctgtttaagCCAACACAGCTCAGAGTCC
> 45334_AB001523
tgtgtttttacttccccacagGATTTGTCCCATGCCACCA
> 45334_AB001523
actgtttgttgactttgcaagGAGGAAAAAGGCTCCACAA
> 45334_AB001523
ctccttacctctccgctccagCTACCTGCAGACCAGCAGC
> 45334_AB001523
tacgataatgtctatttacagGTCATAAGATAGTGCTACC
> 45334_AB001523
tgcctgattctttgactctagGCCAAGGAACCTGGAACGT
> 45334_AB001523
ccacgatctcttttcctttagATAGCCTTCTGGCAGGCAT
> 45334_AB001523
gactttttctgtccttcgtagAACAGTCTTCTGAGGCCGC
> 45334_AB001523
gtctttgtgcttcctcctcagGTGTCGATTGACTGCCCGT
> 45334_AB001523
ctttttgtttttccactttagGAAATATGTTCAAGTTTGT
> 45334_AB001523
gacccccaactctctttccagCCCATCTACAGCAAGCAGT
> 45334_AB001523
ttctctccctttcctgcccagACATTATACAACGTGAAGG
> 45334_AB001523
catcgcttcctctcgtttcagTTGTCGACAACAGTAGCAA
> 45334_AB001523
aacttcctgtgtgttttgcagACAGCTGGATAGAAAACGA
> 45335_AB001523
acaattttgttttcttcacagTTTTCAAATTTGCTGGGTA
> 45337_AB00189S
ttgtgtctttcgtgcttacagCATTGTGGCGACAAGAACA
> 45337_AB00189S
caccacgattccatttcttagGATTCCTACGCCAGCTACG
> 45337_AB00189S
tggttttttcctttgtttcagACACGGCACTCGTTGTGCG
> 45338_AB00189S
ttgtgtctttcgtgcttacagCATTGTGGCGACAAGAACA
> 45338_AB00189S
caccacgattccatttcttagGATTCCTACGCCAGCTACG
> 45338_AB00189S
tggttttttcctttgtttcagACACGGCACTCGTTGTGCG
> 45338_AB00189S
aatgcattctttacccattagGTGATCTTGAGACTCCTGT
> 45339_AB00189S
ttgtgtctttcgtgcttacagCATTGTGGCGACAAGAACA
> 45339_AB00189S
caccacgattccatttcttagGATTCCTACGCCAGCTACG
> 45339_AB00189S
tggttttttcctttgtttcagACACGGCACTCGTTGTGCG
> 45339_AB00189S
aatgcattctttacccattagGTGATCTTGAGACTCCTGT
> 45340_AB00189S
ttgtgtctttcgtgcttacagCATTGTGGCGACAAGAACA
> 45340_AB00189S
caccacgattccatttcttagGATTCCTACGCCAGCTACG
> 45340_AB00189S
tggttttttcctttgtttcagACACGGCACTCGTTGTGCG
> 45341_AB00189S
ttgtgtctttcgtgcttacagCATTGTGGCGACAAGAACA
> 45341_AB00189S
caccacgattccatttcttagGATTCCTACGCCAGCTACG
> 45341_AB00189S
tggttttttcctttgtttcagACACGGCACTCGTTGTGCG
> 45341_AB00189S
ctcctgcctttgctcctacagGAAGTGCGTGAGTGTGTGC
> 45342_AB00189S
ttgtgtctttcgtgcttacagCATTGTGGCGACAAGAACA
> 45342_AB00189S
caccacgattccatttcttagGATTCCTACGCCAGCTACG
> 45342_AB00189S
tggttttttcctttgtttcagACACGGCACTCGTTGTGCG
> 45342_AB00189S
-ggcaatttgcactcacacagCTCAATCCACCCCAGGCTC
> 45342_AB00189S
ctcctgcctttgctcctacagGAAGTGCGTGAGTGTGTGC
> 45342_AB00189S
aggaacggtatcttcccacagGTGTGACGAGAACTGCTTG
> 45342_AB00189S
tttcctgatgcggggccccagCTGACGAGACATTCTGCGA
> 45343_AB00189S
ttgtgtctttcgtgcttacagCATTGTGGCGACAAGAACA
> 45343_AB00189S
caccacgattccatttcttagGATTCCTACGCCAGCTACG
> 45343_AB00189S
tggttttttcctttgtttcagACACGGCACTCGTTGTGCG
> 45343_AB00189S
ctcctgcctttgctcctacagGAAGTGCGTGAGTGTGTGC
> 45343_AB00189S
aggaacggtatcttcccacagGTGTGACGAGAACTGCTTG
> 45343_AB00189S
tttcctgatgcggggccccagCTGACGAGACATTCTGCGA
> 45344_AB00189S
ttgtgtctttcgtgcttacagCATTGTGGCGACAAGAACA
> 45344_AB00189S
caccacgattccatttcttagGATTCCTACGCCAGCTACG
> 45344_AB00189S
tggttttttcctttgtttcagACACGGCACTCGTTGTGCG
> 45344_AB00189S
-ggcaatttgcactcacacagCTCAATCCACCCCAGGCTC
> 45344_AB00189S
ctcctgcctttgctcctacagGAAGTGCGTGAGTGTGTGC
> 45345_AB002059
tgcccgacttctcctccccagGTGGGCGCTCCTCGCCAAA
> 45345_AB002059
accttgagacttgcctcctagGGAGAGAACGTGTTCTTCT
> 45345_AB002059
ctgctctctctcccacctcagCACCCGTCCGTCCCACTGG
> 45345_AB002059
agttcatcttttgttttctagGTGTAAAAACAGGCCAGTG
> 45345_AB002059
tcacctcccttccacctgcagGAGGCCCCTGCTGGCCCAG
> 45345_AB002059
gacctttcccactcctcccagGTCCAATGCCTTGGAGACC
> 45345_AB002059
aaagctatgtgctatgtgcagGGTGGCTCTGTAGGCATCA
> 45345_AB002059
agccttctttcctgcccacagGACAGCCACTCACTGGTGG
" >
</form>-->-->

</td></tr>





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