# HG changeset patch
# User davidmurphy
# Date 1327068220 18000
# Node ID 5149eb3a89c2e75b747fa978c94674296c26907a
# Parent  8d676bbd1f2d4f2673a0f024f648f6d1e79c28b0
Uploaded

diff -r 8d676bbd1f2d -r 5149eb3a89c2 Codonlogo.xml
--- a/Codonlogo.xml	Mon Jan 16 07:03:36 2012 -0500
+++ b/Codonlogo.xml	Fri Jan 20 09:03:40 2012 -0500
@@ -1,27 +1,37 @@
 <tool id="codonlogo" name="Codon Logo" version="3">
   <description>generator for fasta (eg Clustal alignments)</description>
-  <command interpreter="python -W ignore::DeprecationWarning"> 
-    codonlogo -F $outformat -s $size -f $input -o $output -t "$logoname" -m $frame -n $stacks -X $showxaxis --show-yaxis $showyaxis --errorbars $errorbars 
+  <command interpreter="/usr/tmp/bin/python2.7 -W ignore::DeprecationWarning"> 
+    codonlogo -F $outformat -s $size -f $input -o $output -t "$logoname" -m $frame -n $stacks -X $showxaxis --show-yaxis $showyaxis --errorbars $errorbars -G $strict --fineprint "$fineprint" --stack-width $stackwidth --stack-height $stackheight --box $box --resolution $resolution --scale-width $scalewidth
 
     #if str($ylabel) != ''
-    -x $xlabel 
+    -x "$xlabel" 
     #end if
     
     #if str( $ylabel) != ''
-    -y $ylabel 
+    -y "$ylabel"
     #end if
-    #if $range.mode == 'part'
+    
+    #if str($range.mode) == 'part'
     -l "$range.seqstart" -u "$range.seqend" 
     #end if
-    #if $comp.mode == 'equiprobable'
+    #if str($comp.mode) == 'equiprobable'
     --composition 'equiprobable' 
     #end if
-    #if $comp.mode == 'none'
+    #if str($comp.mode) == 'none'
     --composition 'none' 
     #end if
-    #if $comp.mode == 'file'
+    #if str($comp.mode) == 'file'
     -R $compfile 
     #end if
+    #if str($comp.mode) == 'Escherichiacoli'
+    -R Escherichiacoli.txt
+    #end if
+    #if str($comp.mode) == 'Saccharomycescerevisiae'
+    -R Saccharomycescerevisiae.txt
+    #end if
+    #if str($comp.mode) == 'Homosapiens'
+    -R Homosapiens.txt
+    #end if
     
     #if $colours.colour == 'part'
     
@@ -322,7 +332,7 @@
   </command>
   <inputs>
     <page>
-      <param format="fasta" name="input" type="data" label="txt" />
+      <param format="text" name="input" type="data" label="Input file.(must be an aligned fasta file of sequences the same length, recommended to use sequences aligned by codon)" />
       
       <param name="logoname" label="Title for output Sequence Logo" type="text" size="50" value="" />
       
@@ -334,13 +344,15 @@
       <option value="eps">EPS</option>
       <option value="txt">Text (shows the detailed calculations for each position - no image)</option>
     </param>
+    <param name="resolution" size="5" type="integer" value="96" label="Bitmap resolution in dots per inch (DPI).For high quality printable PNG this should be set to 600" />
+
     <param name="frame" type="select" label="Frame to view the alignment. If reverse complement is selected then codonlogo will read from the last symbol in the sequences backwards and replace each base with it's complement." >
       <option value="0" selected="True">0</option>
       <option value="1">+1</option>
-      <option value="2">-1</option>
+      <option value="2">+2</option>
       <option value="3">reverse complement 0</option>
       <option value="4">reverse complement +1</option>
-      <option value="5">reverse complement -1</option>
+      <option value="5">reverse complement +2</option>
     </param>
     <param name="stacks" size="5" type="integer" value="20" label="Number of stacks per line, default 20" />
     <param name="showxaxis" type="select" display="radio" label="Display sequence numbers along x-axis?" >
@@ -350,9 +362,15 @@
     <param name="xlabel" label="X-axis label" type="text" size="50" value="" />
     <param name="ylabel" label="Y-axis label" type="text" size="50" value="" />
     
-    <param name="fineprint" label="The fine print." type="text" size="50" value="CodonLogo 1.0" />
+    <param name="fineprint" label="The fine print." type="text" size="50" value="CodonLogo 1.1" />
+    
+    <param name="stackwidth" size="5" type="float" value="40.0" label="Width of a logo stack" />
     
-    
+    <param name="stackheight" size="5" type="integer" value="100" label="height of a logo stack" />
+     <param name="box" type="select" display="radio" label="Draw boxes around symbols?" >
+        <option value="True" >Yes</option>
+        <option value="False" selected="True">No</option>
+      </param>
       <param name="showyaxis" type="select" display="radio" label="Display entropy scale along y-axis?" >
         <option value="True" selected="True">Yes</option>
         <option value="False">No</option>
@@ -361,6 +379,14 @@
         <option value="True" selected="True">Yes</option>
         <option value="False">No</option>
       </param>
+      <param name="scalewidth" type="select" display="radio" label="Scale the visible stack width by the fraction of symbols in the column?" >
+        <option value="True" selected="True">Yes</option>
+        <option value="False">No</option>
+      </param>
+      <param name="strict" type="select" display="radio" label="Allow gaps which are not in groups of 3/ allow codons with ambiguous nucleotides." >
+        <option value="False" selected="True">Yes</option>
+        <option value="True" >No</option>
+      </param>
   <conditional name="range">
         <param name="mode" type="select" label="Include entire sequence (default) or specify a subsequence range to use">
           <option value="complete" selected="true">complete sequence</option>
@@ -369,10 +395,10 @@
         <when value="complete">
         </when>
         <when value="part">    
-           <param name="seqstart" size="5" type="integer" value="1" help="WARNING: Specifying indexes outside the sequence lengths will cause unpredictable but bad consequences!" 
-             label="Index (eg 1=first letter) of the start of the sequence range to include in the logo">
+           <param name="seqstart" size="5" type="integer" value="1" help="WARNING: Specifying codon numbers outside the sequence lengths will cause unpredictable but bad consequences!" 
+             label="Index_start (eg 1=first codon) of the start of the sequence range to include in the logo">
            </param>
-           <param name="seqend" size="5" type="integer" value="99999" label="Index (eg 75=75th letter) of the end of the sequence range to include in the logo" >
+           <param name="seqend" size="5" type="integer" value="99999" label="Index_end (eg 75=75th codon) of the end of the sequence range to include in the logo" >
            </param> 
         </when>
     </conditional>
@@ -381,6 +407,9 @@
         
         <option value="equiprobable" >equiprobable</option>
         <option value="none" >none</option>
+<!--	<option value="Escherichiacoli" >Escherichiacoli</option>
+	<option value="Homosapiens" >Homosapiens</option>
+	<option value="Saccharomycescerevisiae" >Saccharomycescerevisiae</option>-->
         <option value="file">from file</option>
         
       </param>
diff -r 8d676bbd1f2d -r 5149eb3a89c2 README.txt
--- a/README.txt	Mon Jan 16 07:03:36 2012 -0500
+++ b/README.txt	Fri Jan 20 09:03:40 2012 -0500
@@ -1,38 +1,51 @@
-
-CodonLogo (http://recode.ucc.ie/CodonLogo) is a tool for creating sequence 
-logos from biological sequence alignments.  It can be run on the command line,
-as a standalone webserver or as a CGI webapp.
-
-
-For help on the command line interface run
-    ./codonlogo --help
-
-To build a simple logo run
-    ./codonlogo  < cap.fa > logo.eps
-
-
-To run as a standalone webserver at localhost:8080 
-    ./codonlogo --server
-
-
-An example file of probabilities is included, examplepriorfile.txt
-It can be used with the following command.
-
-    ./codonlogo --prior examplepriorfile.txt < cap.fa > logo.eps
-
-
-There is a known issue with GPL Ghostscript 9.04 which affects some users which may cause ghostscript to segfault. 
-This is not believed to be a problem with CodonLogo.
-This is being investigated. if you encounter this problem it's recommended to downgrade to version 9.01 or earlier of ghostscript.
-
-
-
--- Distribution and Modification --
-This package is distributed under the new BSD Open Source License. 
-Please see the LICENSE.txt file for details on copyright and licensing.
-The CodonLogo source code can be downloaded from 
-http://recode.ucc.ie/CodonLogo
-
-CodonLogo requires Python 2.6 or 2.7, the corebio python toolkit for
-computational biology (http://code.google.com/p/corebio), and the python
-array package 'numpy' (http://www.scipy.org/Download)
+
+CodonLogo (http://recode.ucc.ie/CodonLogo) is a tool for creating sequence 
+logos from biological sequence alignments.  It can be run from the command line as a standalone webserver or as a CGI webapp.
+
+
+For help on the command line interface run
+    ./codonlogo --help
+
+To build a simple logo run
+    ./codonlogo  < cap.fa > logo.eps
+
+
+To run as a standalone webserver at localhost:8080 
+    ./codonlogo --server
+
+
+An example file of probabilities is included, examplepriorfile.txt
+It can be used with the following command.
+
+    ./codonlogo --prior ./examples/Escherichiacoli.txt < cap.fa > logo.eps
+
+
+examplepriorfile contains the frequencies for codons in human CDS regions. 
+
+
+KNOWN ISSUES:
+
+There is a known issue with GPL Ghostscript 9.04 which affects some users which may cause ghostscript to segfault or prevent codonlogos from being generated in anything other than eps format. 
+
+This is believed to be an issue with ghostscript and a bug report has been submitted to the ghostscript mailing list.
+This is being investigated. if you encounter this problem it's recommended to downgrade to version 9.01 of ghostscript or earlier .
+
+
+
+For converting files to a suitable format the following sites can be used:
+
+http://genome.nci.nih.gov/tools/reformat.html
+http://www-bimas.cit.nih.gov/molbio/readseq/
+
+
+
+
+-- Distribution and Modification --
+This package is distributed under the new BSD Open Source License. 
+Please see the LICENSE.txt file for details on copyright and licensing.
+The CodonLogo source code can be downloaded from 
+http://recode.ucc.ie/CodonLogo
+
+CodonLogo requires Python 2.6 or 2.7, the corebio python toolkit for
+computational biology (http://code.google.com/p/corebio), and the python
+array package 'numpy' (http://www.scipy.org/Download)
diff -r 8d676bbd1f2d -r 5149eb3a89c2 README.txt~
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/README.txt~	Fri Jan 20 09:03:40 2012 -0500
@@ -0,0 +1,47 @@
+
+CodonLogo (http://recode.ucc.ie/CodonLogo) is a tool for creating sequence 
+logos from biological sequence alignments.  It can be run on the command line,
+as a standalone webserver or as a CGI webapp.
+
+
+For help on the command line interface run
+    ./codonlogo --help
+
+To build a simple logo run
+    ./codonlogo  < cap.fa > logo.eps
+
+
+To run as a standalone webserver at localhost:8080 
+    ./codonlogo --server
+
+
+An example file of probabilities is included, examplepriorfile.txt
+It can be used with the following command.
+
+    ./codonlogo --prior examplepriorfile.txt < cap.fa > logo.eps
+
+
+examplepriorfile contains the frequencies for codons in human CDS regions. 
+
+
+There is a known issue with GPL Ghostscript 9.04 which affects some users which may cause ghostscript to segfault. 
+This is not believed to be a problem with CodonLogo.
+This is being investigated. if you encounter this problem it's recommended to downgrade to version 9.01 or earlier of ghostscript.
+
+For converting files to a suitable format the following sites can be used:
+
+http://genome.nci.nih.gov/tools/reformat.html
+http://www-bimas.cit.nih.gov/molbio/readseq/
+
+
+
+
+-- Distribution and Modification --
+This package is distributed under the new BSD Open Source License. 
+Please see the LICENSE.txt file for details on copyright and licensing.
+The CodonLogo source code can be downloaded from 
+http://recode.ucc.ie/CodonLogo
+
+CodonLogo requires Python 2.6 or 2.7, the corebio python toolkit for
+computational biology (http://code.google.com/p/corebio), and the python
+array package 'numpy' (http://www.scipy.org/Download)
diff -r 8d676bbd1f2d -r 5149eb3a89c2 examplepriorfile.txt
--- a/examplepriorfile.txt	Mon Jan 16 07:03:36 2012 -0500
+++ /dev/null	Thu Jan 01 00:00:00 1970 +0000
@@ -1,64 +0,0 @@
-AAA 1
-AAC 1.5
-AAG 0.5
-AAT 1
-ACA 1
-ACC 1
-ACG 1
-ACT 1
-AGA 1
-AGC 1
-AGG 1
-AGT 1
-ATA 1
-ATC 1
-ATG 1
-ATT 1
-CAA 1
-CAC 1
-CAG 1
-CAT 1
-CCA 1
-CCC 1
-CCG 1
-CCT 1
-CGA 1
-CGC 1
-CGG 1
-CGT 1
-CTA 1
-CTC 1
-CTG 1
-CTT 1
-GAA 1
-GAC 1
-GAG 1
-GAT 1
-GCA 1
-GCC 1
-GCG 1
-GCT 1
-GGA 1
-GGC 1
-GGG 1
-GGT 1
-GTA 1
-GTC 1
-GTG 1
-GTT 1
-TAA 1
-TAC 1
-TAG 1
-TAT 1
-TCA 1
-TCC 1
-TCG 1
-TCT 1
-TGA 1
-TGC 1
-TGG 1
-TGT 1
-TTA 1
-TTC 1
-TTG 1
-TTT 1
diff -r 8d676bbd1f2d -r 5149eb3a89c2 examples/Escherichiacoli.txt
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/examples/Escherichiacoli.txt	Fri Jan 20 09:03:40 2012 -0500
@@ -0,0 +1,64 @@
+UUU	19.7
+UUC	15
+UUA	15.2
+UUG	11.9
+CUU	11.9
+CUC	10.5
+CUA	5.3
+CUG	46.9
+AUU	30.5
+AUC	18.2
+AUA	3.7
+AUG	24.8
+GUU	16.8
+GUC	11.7
+GUA	11.5
+GUG	26.4
+UCU	5.7
+UCC	5.5
+UCA	7.8
+UCG	8
+CCU	8.4
+CCC	6.4
+CCA	6.6
+CCG	26.7
+ACU	8
+ACC	22.8
+ACA	6.4
+ACG	11.5
+GCU	10.7
+GCC	31.6
+GCA	21.1
+GCG	38.5
+UAU	16.8
+UAC	14.6
+UAA	1.8
+UAG	0
+CAU	15.8
+CAC	13.1
+CAA	12.1
+CAG	27.7
+AAU	21.9
+AAC	24.4
+AAA	33.2
+AAG	12.1
+GAU	37.9
+GAC	20.5
+GAA	43.7
+GAG	18.4
+UGU	5.9
+UGC	8
+UGA	1
+UGG	10.7
+CGU	21.1
+CGC	26
+CGA	4.3
+CGG	4.1
+AGU	7.2
+AGC	16.6
+AGA	1.4
+AGG	1.6
+GGU	21.3
+GGC	33.4
+GGA	9.2
+GGG	8.6
\ No newline at end of file
diff -r 8d676bbd1f2d -r 5149eb3a89c2 examples/Galaxy-Workflow-Figure.ga
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/examples/Galaxy-Workflow-Figure.ga	Fri Jan 20 09:03:40 2012 -0500
@@ -0,0 +1,118 @@
+{
+    "a_galaxy_workflow": "true", 
+    "annotation": "Generates part B", 
+    "format-version": "0.1", 
+    "name": "Figure", 
+    "steps": {
+        "0": {
+            "annotation": "", 
+            "id": 0, 
+            "input_connections": {}, 
+            "inputs": [
+                {
+                    "description": "", 
+                    "name": "Input Dataset"
+                }
+            ], 
+            "name": "Input dataset", 
+            "outputs": [], 
+            "position": {
+                "left": 197, 
+                "top": 384
+            }, 
+            "tool_errors": null, 
+            "tool_id": null, 
+            "tool_state": "{\"name\": \"Input Dataset\"}", 
+            "tool_version": null, 
+            "type": "data_input", 
+            "user_outputs": []
+        }, 
+        "1": {
+            "annotation": "", 
+            "id": 1, 
+            "input_connections": {
+                "input": {
+                    "id": 0, 
+                    "output_name": "output"
+                }
+            }, 
+            "inputs": [], 
+            "name": "Codon Logo", 
+            "outputs": [
+                {
+                    "name": "output", 
+                    "type": "pdf"
+                }
+            ], 
+            "position": {
+                "left": 580, 
+                "top": 228
+            }, 
+            "post_job_actions": {}, 
+            "tool_errors": null, 
+            "tool_id": "codonlogo", 
+            "tool_state": "{\"outformat\": \"\\\"pdf\\\"\", \"frame\": \"\\\"0\\\"\", \"size\": \"\\\"large\\\"\", \"__page__\": 0, \"colours\": \"{\\\"colour\\\": \\\"no\\\", \\\"__current_case__\\\": 0}\", \"strict\": \"\\\"False\\\"\", \"logoname\": \"\\\"0 Frame\\\"\", \"ylabel\": \"\\\"\\\"\", \"input\": \"null\", \"stackheight\": \"\\\"100\\\"\", \"scalewidth\": \"\\\"True\\\"\", \"showyaxis\": \"\\\"True\\\"\", \"comp\": \"{\\\"mode\\\": \\\"equiprobable\\\", \\\"__current_case__\\\": 1}\", \"showxaxis\": \"\\\"True\\\"\", \"stackwidth\": \"\\\"40.0\\\"\", \"box\": \"\\\"False\\\"\", \"fineprint\": \"\\\"\\\"\", \"range\": \"{\\\"seqend\\\": \\\"16\\\", \\\"mode\\\": \\\"part\\\", \\\"__current_case__\\\": 1, \\\"seqstart\\\": \\\"6\\\"}\", \"xlabel\": \"\\\"\\\"\", \"errorbars\": \"\\\"True\\\"\", \"resolution\": \"\\\"96\\\"\", \"stacks\": \"\\\"20\\\"\"}", 
+            "tool_version": "3", 
+            "type": "tool", 
+            "user_outputs": []
+        }, 
+        "2": {
+            "annotation": "", 
+            "id": 2, 
+            "input_connections": {
+                "input": {
+                    "id": 0, 
+                    "output_name": "output"
+                }
+            }, 
+            "inputs": [], 
+            "name": "Codon Logo", 
+            "outputs": [
+                {
+                    "name": "output", 
+                    "type": "pdf"
+                }
+            ], 
+            "position": {
+                "left": 580, 
+                "top": 360
+            }, 
+            "post_job_actions": {}, 
+            "tool_errors": null, 
+            "tool_id": "codonlogo", 
+            "tool_state": "{\"outformat\": \"\\\"pdf\\\"\", \"frame\": \"\\\"1\\\"\", \"size\": \"\\\"large\\\"\", \"__page__\": 0, \"colours\": \"{\\\"colour\\\": \\\"no\\\", \\\"__current_case__\\\": 0}\", \"strict\": \"\\\"False\\\"\", \"logoname\": \"\\\"+1 Frame\\\"\", \"ylabel\": \"\\\"\\\"\", \"input\": \"null\", \"stackheight\": \"\\\"100\\\"\", \"scalewidth\": \"\\\"True\\\"\", \"showyaxis\": \"\\\"True\\\"\", \"comp\": \"{\\\"mode\\\": \\\"equiprobable\\\", \\\"__current_case__\\\": 1}\", \"showxaxis\": \"\\\"True\\\"\", \"stackwidth\": \"\\\"40.0\\\"\", \"box\": \"\\\"False\\\"\", \"fineprint\": \"\\\"\\\"\", \"range\": \"{\\\"seqend\\\": \\\"16\\\", \\\"mode\\\": \\\"part\\\", \\\"__current_case__\\\": 1, \\\"seqstart\\\": \\\"6\\\"}\", \"xlabel\": \"\\\"\\\"\", \"errorbars\": \"\\\"True\\\"\", \"resolution\": \"\\\"96\\\"\", \"stacks\": \"\\\"20\\\"\"}", 
+            "tool_version": "3", 
+            "type": "tool", 
+            "user_outputs": []
+        }, 
+        "3": {
+            "annotation": "", 
+            "id": 3, 
+            "input_connections": {
+                "input": {
+                    "id": 0, 
+                    "output_name": "output"
+                }
+            }, 
+            "inputs": [], 
+            "name": "Codon Logo", 
+            "outputs": [
+                {
+                    "name": "output", 
+                    "type": "pdf"
+                }
+            ], 
+            "position": {
+                "left": 580, 
+                "top": 493
+            }, 
+            "post_job_actions": {}, 
+            "tool_errors": null, 
+            "tool_id": "codonlogo", 
+            "tool_state": "{\"outformat\": \"\\\"pdf\\\"\", \"frame\": \"\\\"2\\\"\", \"size\": \"\\\"large\\\"\", \"__page__\": 0, \"colours\": \"{\\\"colour\\\": \\\"no\\\", \\\"__current_case__\\\": 0}\", \"strict\": \"\\\"False\\\"\", \"logoname\": \"\\\"+2 Frame\\\"\", \"ylabel\": \"\\\"\\\"\", \"input\": \"null\", \"stackheight\": \"\\\"100\\\"\", \"scalewidth\": \"\\\"True\\\"\", \"showyaxis\": \"\\\"True\\\"\", \"comp\": \"{\\\"mode\\\": \\\"equiprobable\\\", \\\"__current_case__\\\": 1}\", \"showxaxis\": \"\\\"True\\\"\", \"stackwidth\": \"\\\"40.0\\\"\", \"box\": \"\\\"False\\\"\", \"fineprint\": \"\\\"\\\"\", \"range\": \"{\\\"seqend\\\": \\\"16\\\", \\\"mode\\\": \\\"part\\\", \\\"__current_case__\\\": 1, \\\"seqstart\\\": \\\"6\\\"}\", \"xlabel\": \"\\\"\\\"\", \"errorbars\": \"\\\"True\\\"\", \"resolution\": \"\\\"96\\\"\", \"stacks\": \"\\\"20\\\"\"}", 
+            "tool_version": "3", 
+            "type": "tool", 
+            "user_outputs": []
+        }
+    }
+}
\ No newline at end of file
diff -r 8d676bbd1f2d -r 5149eb3a89c2 examples/Galaxy53-[_2_Frame_output.pdf](1).pdf
Binary file examples/Galaxy53-[_2_Frame_output.pdf](1).pdf has changed
diff -r 8d676bbd1f2d -r 5149eb3a89c2 examples/Galaxy54-[_1_Frame_output.pdf].pdf
Binary file examples/Galaxy54-[_1_Frame_output.pdf].pdf has changed
diff -r 8d676bbd1f2d -r 5149eb3a89c2 examples/Galaxy55-[0_Frame_output.pdf].pdf
Binary file examples/Galaxy55-[0_Frame_output.pdf].pdf has changed
diff -r 8d676bbd1f2d -r 5149eb3a89c2 examples/Homosapiens.txt
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/examples/Homosapiens.txt	Fri Jan 20 09:03:40 2012 -0500
@@ -0,0 +1,64 @@
+UUU	17.6
+UUC	20.3
+UUA	7.7
+UUG	12.9
+CUU	13.2
+CUC	19.6
+CUA	7.2
+CUG	39.6
+AUU	16
+AUC	20.8
+AUA	7.5
+AUG	22
+GUU	11
+GUC	14.5
+GUA	7.1
+GUG	28.1
+UCU	15.2
+UCC	17.7
+UCA	12.2
+UCG	4.4
+CCU	17.5
+CCC	19.8
+CCA	16.9
+CCG	6.9
+ACU	13.1
+ACC	18.9
+ACA	15.1
+ACG	6.1
+GCU	18.4
+GCC	27.7
+GCA	15.8
+GCG	7.4
+UAU	12.2
+UAC	15.3
+UAA	1
+UAG	0.8
+CAU	10.9
+CAC	15.1
+CAA	12.3
+CAG	34.2
+AAU	17
+AAC	19.1
+AAA	24.4
+AAG	31.9
+GAU	21.8
+GAC	25.1
+GAA	29
+GAG	39.6
+UGU	10.6
+UGC	12.6
+UGA	1.6
+UGG	13.2
+CGU	4.5
+CGC	10.4
+CGA	6.2
+CGG	11.4
+AGU	12.1
+AGC	19.5
+AGA	12.2
+AGG	12
+GGU	10.8
+GGC	22.2
+GGA	16.5
+GGG	16.5
\ No newline at end of file
diff -r 8d676bbd1f2d -r 5149eb3a89c2 examples/Saccharomycescerevisiae.txt
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/examples/Saccharomycescerevisiae.txt	Fri Jan 20 09:03:40 2012 -0500
@@ -0,0 +1,64 @@
+UUU	26.1
+UUC	18.4
+UUA	26.2
+UUG	27.2
+CUU	12.3
+CUC	5.4
+CUA	13.4
+CUG	10.5
+AUU	30.1
+AUC	17.2
+AUA	17.8
+AUG	20.9
+GUU	22.1
+GUC	11.8
+GUA	11.8
+GUG	10.8
+UCU	23.5
+UCC	14.2
+UCA	18.7
+UCG	8.6
+CCU	13.5
+CCC	6.8
+CCA	18.3
+CCG	5.3
+ACU	20.3
+ACC	12.7
+ACA	17.8
+ACG	8
+GCU	21.2
+GCC	12.6
+GCA	16.2
+GCG	6.2
+UAU	18.8
+UAC	14.8
+UAA	1.1
+UAG	0.5
+CAU	13.6
+CAC	7.8
+CAA	27.3
+CAG	12.1
+AAU	35.7
+AAC	24.8
+AAA	41.9
+AAG	30.8
+GAU	37.6
+GAC	20.2
+GAA	45.6
+GAG	19.2
+UGU	8.1
+UGC	4.8
+UGA	0.7
+UGG	10.4
+CGU	6.4
+CGC	2.6
+CGA	3
+CGG	1.7
+AGU	14.2
+AGC	9.8
+AGA	21.3
+AGG	9.2
+GGU	23.9
+GGC	9.8
+GGA	10.9
+GGG	6
\ No newline at end of file
diff -r 8d676bbd1f2d -r 5149eb3a89c2 examples/alignment_real.txt
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/examples/alignment_real.txt	Fri Jan 20 09:03:40 2012 -0500
@@ -0,0 +1,857 @@
+GATAATCTGGCGCTGAAGGAACTGCTCTCAAAAAACTTCTGACGCCCGAGGTTAAGCGGC
+GATATGGAAGCGTTGAAGGTTGTCGTCAAGGGAAAGCCCTGAGCCCGCAAGCCAAACGCG
+GATATGGAAGCGTTGAAGGTTGTCGTCAAGGGAAAGCCCTGAGCCCGCAAGCCAAACGCG
+GACATGGAAGCGCTGAAGGTGGTGGTCAAGGGAAAGCCCTGAGCCCACAAGCCAAGCGCG
+GATATGGAAGCGTTGAAGGTTGTCGTCAAGGGAAAGCCCTGAGCCCGCAAGCCAAACGCG
+GACAAGCACATGCTCCAGGAGGTCCTTCGAAAAAAATTCTAAGGCCCGCGGCGTTGCGAC
+GACAAGGCGGCGCTTCAGGATCTGCTAAGCCGAAAGTAGTCAGCCCGCAGGCCAAACGCG
+CAGACGGATATCCTGAAGGAAGCCCTTGGAAAAAAATGAAGCGGCCAGCCCAGCGCCGGG
+GATATGGAAGCGTTGAAGGTTGTCGTCAAGGGAAAGCCCTGAGCCCGCAAGCCAAACGCG
+GATAAGGAAATGCTGCAGGATGTCATCCGAAAAAAGTTCTGAGGCCGCTGCAGAAGCGTG
+GAAAACCATGCATTGAAGGATGTCATCGCAAAAAAGCTGTAGACCCGGCGCATAAGCGCC
+CAGACGGATATCCTGAAGGAAGCCCTTGGAAAAAAATGAAGCGGCCAGCCCAGCGCCGGG
+GATATGGAAGCGTTGAAGGTTGTCGTCAAGGGAAAGCCCTGAGCCCGCAAGCCAAACGCG
+GATATGGAAGCGTTGAAGGTCGTCGTCAAGGGAAAGCCCTGAGCCCGCAAGCCAAACGCG
+GATATGGAAGCGTTGAAGGTTGTCGTCAAGGGAAAGCCCTGAGCCCGCAAGCCAAACGCG
+GATATGGAAGCGTTGAAGGTTGTCGTCAAGGGAAAGCCCTGAGCCCGCAAGCCAAACGCG
+CAGACGGATATCCTGAAGGAAGCCCTTGGAAAAAAATGAAGCGGCCAGCCCAGCGCCGGG
+CAGACGGATATCCTGAAGGAAGCCCTTGGAAAAAAATGAAGCGGCCAGCCCAGCGCCGGG
+GACAAGGTCATGCTGCAGGATGTTCTGAGAAAAAAGCTCTAAGGCCGGCGCAGCGCAAAG
+GACATGGAAGCGCTGAAGGTGGTGGTCAAGGGAAAGCCCTGAGCCCGCAAGCCAAGCGCG
+GATATGGAAGCGTTGAAGGTTGTCGTCAAGGGAAAGCCCTGAGCCCGCAAGCCAAACGCG
+CAGACGGATATCCTGAAGGAAGCCCTTGGAAAAAAATGAAGCGGCCAGCCCAGCGCCGGG
+GATATGGAAGCGTTGAAGGTTGTCGTCAAGGGAAAGCCCTGAGCCCGCAAGCCAAACGCG
+GACAAAGAGATGCTGCAGGAGGTTATCAAAAAAAAGTTCTAAGGCCGGCGCAGAAGCGCG
+CAGACGGATATCCTGAAGGAAGCCCTTGGAAAAAAATGAAGCGGCCAGCCCAGCGCCGGG
+CTCGACAATGCTGCCTTGAAAGACCTTTTGGGAAAGAAGTGGTGACGCCCGCGGCCAAGC
+CTCGACAACGCCGCGTTGAAAGACCTTTTGGGAAAGAAGTGGTGACGCCCGCAGCCCAGC
+CAGACGGATATCCTGAAGGAAGCCCTTGGAAAAAAATGAAGCGGCCAGCCCAGCGCCGGG
+AGCACCGATCTCCTGAAGGAAGCCCTCGCAAAAAAATGGTGAGGCCATCGCAACGTCGCG
+CTCGACAACGCCGCGTTGAAAGACCTTTTGGGAAAGAAGTGGTGACGCCCGCAGCCCAGC
+CAGACGGATATCCTGAAGGAAGCCCTTGGAAAAAAATGAAGCGGCCAGCCCAGCGCCGGG
+GATATGGAAGCGTTGAAGGTTGTCGTCAAGGGAAAGCCCTGAGCCCGCAAGCCAAACGCG
+GATATGGAAGCGTTGAAGGTTGTCGTCAAGGGAAAGCCCTGAGCCCGCAAGCCAAACGCG
+GATAATCAACTTCTTAAAGATCTCTTCACAAAAAAAGGCTGGGCCCTGCCACCCAAAGAC
+GATATGGAAGCGTTGAAGGTTGTCGTCAAGGGAAAGCCCTGAGCCCGCAAGCCAAACGCG
+GATATGGAAGCGTTGAAGGTTGTCGTCAAGGGAAAGCCCTGAGCCCGCAAGCCAAACGCG
+AAATCAGATATCCTACAGGATGCCATTTCAAAAAAGTGGTAGCGCCCTCTAGGCGCAAAG
+GATATGGAAGCGTTGAAGGTTGTCGTCAAGGGAAAGCCCTGAGCCCGCAAGCCAAACGCG
+AGTACCGACCTGCTGAAGGAAGCGCTCGCAAAAAAATGGTGAGGCCATCTCAGCGACGCG
+GATATGGAAGCGTTGAAGGTTGTCGTCAAGGGAAAGCCCTGAGCCCGCAAGCCAAACGCG
+GATATGGAAGCGTTGAAGGTTGTCGTCAAGGGAAAGCCCTGAGCCCGCAAGCCAAACGCG
+GATAACCAAATACTCAAAGAGATTTTCGTAAAAAAGGGCTGGGCTCTGCCGCAAAAAGGG
+GACGTGGCCACGCTGCGTGAGGCGCTGGGAAAAAACTTCTGACGCCCGGCGCACGGAGAA
+GATATGGAAGCGTTGAAGGTTGTCGTCAAGGGAAAGCCCTGAGCCCGCAAGCCAAACGCG
+GATATGGAAGCGTTGAAGGTTGTCGTCAAGGGAAAGCCCTGAGCCCGCAAGCCAAACGCG
+AGTACCGACCTGCTGAAGGAAGCGCTCGCAAAAAAATGGTGAGGCCATCTCAGCGACGCG
+AAGGCCGAGATCGTGACGGAGACGCTTGAAAAAAAGTGGTGAGGCCATCTCGCCGCCGCG
+CAGACGGATATCCTGAAGGAAGCCCTTGGAAAAAAATGAAGCGGCCAGCCCAGCGCCGGG
+GATATGGAAGCGTTGAAGGTTGTCGTCAAGGGAAAGCCCTGAGCCCGCAAGCCAAACGCG
+CAGACGGATATCCTGAAGGAAGCCCTTGGAAAAAAATGAAGCGGCCAGCCCAGCGCCGGG
+GATATGGAAGCGTTGAAGGTCGTCGTCAAGGGAAAGCCCTGAGCCCGCAAGCCAAACGCG
+CAGACGGATATCCTGAAGGAAGCCCTTGGAAAAAAATGAAGCGGCCAGCCCAGCGCCGGG
+CAGACGGATATCCTGAAGGAAGCCCTTGGAAAAAAATGAAGCGGCCAGCCCAGCGCCGGG
+GAAAATAAAGCAATGAAGGACTTAATAGAAAAAAAGCTCTAAGGCCGCAGGAAAGACGTG
+CAGACGGATATCCTGAAGGAAGCCCTTGGAAAAAAATGAAGCGGCCAGCCCAGCGCCGGG
+GAGAACCGGGCACTGAAAGACGTTATCGAAAAAAAGCTTTAAAACCAGCCTGTAAGCGTG
+GAAAACCATGCATTGAAGGATGTCATCGCAAAAAAACTGTAGACCCGGCGCACAAGCGCC
+CAGACGGATATCCTGAAGGAAGCCCTTGGAAAAAAATGAAGCGGCCAGCCCAGCGCCGGG
+GAATGCCGGGCGCTGAAAGACGTCATCGAAAAAAAGCTTTAAAACCAGCGATAAAGCGTG
+GATATGGAAGCGTTGAAGGTTGTCGTCAAGGGAAAGCCCTGAGCCCGCAAGCCAAACGCG
+GACAAAGAGATGCTGCAGGAGGTTATCAAAAAAAAGTTCTAAGGCCGGCGCAGAAGCGCG
+AAGGCCGAGATCGTGACGGAGGCGCTCGAAAAAAAGTGGTGAGGCCATCTCGCCGCCGCG
+GATATGGAAGCGTTGAAGGTTGTCGTCAAGGGAAAGCCCTGAGCCCGCAAGCCAAACGCG
+GATATGGAAGCGTTGAAGGTTGTCGTCAAGGGAAAGCCCTGAGCCCGCAAGCCAAACGCG
+GACAAAGCGGCGTTGAAGGATCTTCTGGCAAAAAAGTTCTGACGCCCGCCGCGCAGCGGG
+CAGGCCGACCTGCTTCGAGAGGCTCTTGGAAAAAAGTGACGCGGCCAGCTCGACGCCGGG
+GATATGGAAGCGTTGAAGGTTGTCGTCAAGGGAAAGCCCTGAGCCCGCAAGCCAAACGCG
+GATATGGAAGCGTTGAAGGTTGTCGTCAAGGGAAAGCCCTGAGCCCGCAAGCCAAACGCG
+GAATGCCGCGCCCTGAAAGACGTTATTGAAAAAAAACTTTAAAACCAGCGATAAAGCGTG
+GATAAGGAGGCGCTTCAGGTGGCTCTGGGGCGAAAGTACTGACGACAGACCAGAAGCGGG
+GATATGGAAGCGTTGAAGGTTGTCGTCAAGGGAAAGCCCTGAGCCCGCAAGCCAAACGCG
+GATATGGAAGCGTTGAAGGTTGTCGTCAAGGGAAAGCCCTGAGCCCGCAAGCCAAACGCG
+GATATGGAAGCGTTGAAGGTTGTCGTCAAGGGAAAGCCCTGAGCCCGCAAGCCAAACGCG
+GATATGGAAGCGTTGAAGGTTGTCGTCAAGGGAAAGCCCTGAGCCCGCAAGCCAAACGCG
+CAGACGGATATCCTGAAGGAAGCCCTTGGAAAAAAATGAAGCGGCCAGCCCAGCGCCGGG
+CAGACGGATATCCTGAAGGAAGCCCTTGGAAAAAAATGAAGCGGCCAGCCCAGCGCCGGG
+CAGACGGATATCCTGAAGGAAGCCCTTGGAAAAAAATGAAGCGGCCAGCCCAGCGCCGGG
+GATAACGCGGCGCTGAAGGATCTACTGTCTCGAAAGTAGCAAGCCCGCAGGCCAAGCGCG
+CAGACGGATATCCTGAAGGAAGCCCTTGGAAAAAAATGAAGCGGCCAGCCCAGCGCCGGG
+GATATGGAAGCGTTGAAGGTTGTCGTCAAGGGAAAGCCCTGAGCCCGCAAGCCAAACGCG
+GATATGGAAGCGTTGAAGGTTGTCGTCAAGGGAAAGCCCTGAGCCCGCAAGCCAAACGCG
+GATAAGGAAATGCTGCAGGATGTCATCCGAAAAAAGTTCTGAGGCCGCTGCAGAAGCGTG
+GATATGGAAGCGTTGAAGGTTGTCGTCAAGGGAAAGCCCTGAGCCCGCAAGCCAAACGCG
+CAGACGGATATCCTGAAGGAAGCCCTTGGAAAAAAATGAAGCGGCCAGCCCAGCGCCGGG
+GATAAGGAAATGCTGCAGGATGTCATCCGAAAAAAGTTCTGAGGCCGCTGCAGAAGCGCG
+GATATGGAAGCGTTGAAGGTTGTCGTCAAGGGAAAGCCCTGAGCCCGCAAGCCAAACGCG
+GATATGGAAGCGTTGAAGGTTGTCGTCAAGGGAAAGCCCTGAGCCCGCAAGCCAAACGCG
+GATATGGAAGCGTTGAAGGTTGTCGTCAAGGGAAAGCCCTGAGCCCGCAAGCCAAACGCG
+GATATGGAAGCGTTGAAGGTTGTCGTCAAGGGAAAGCCCTGAGCCCGCAAGCCAAACGCG
+GATATGGAAGCGTTGAAGGTTGTCGTCAAGGGAAAGCCCTGAGCCCGCAAGCCAAACGCG
+GATATGGAAGCGTTGAAGGTTGTCGTCAAGGGAAAGCCCTGAGCCCGCAAGCCAAACGCG
+GATATGGAAGCGTTGAAGGTCGTCGTCAAGGGAAAGCCCTGAGCCCGCAAGCCAAACGCG
+CAGACGGATATCCTGAAGGAAGCCCTTGGAAAAAAATGAAGCGGCCAGCCCAGCGCCGGG
+GATATGGAAGCGTTGAAGGTTGTCGTCAAGGGAAAGCCCTGAGCCCGCAAGCCAAACGCG
+GATATGGAAGCGTTGAAGGTTGTCGTCAAGGGAAAGCCCTGAGCCCGCAAGCCAAACGCG
+GATATGGAAGCGTTGAAGGTTGTCGTCAAGGGAAAGCCCTGAGCCCGCAAGCCAAACGCG
+AGTACCGACCTGCTGAAGGAAGCGCTCGCAAAAAAATGGTGAGGCCATCTCAGCGACGCG
+GATATGGAAGCGTTGAAGGTTGTCGTCAAGGGAAAGCCCTGAGCCCGCAAGCCAAACGCG
+GACGTGGCCACGCTGCGTGAGGCGCTGGGAAAAAACTTCTGACGCCCGGCGCACGGAGAA
+GACATCGAGTCGCTGAAAGTGGTCGCTCGGGGAAAAGGGTAAGCCCGACAGCACGGCGGG
+CAGACGGATATCCTGAAGGAAGCCCTTGGAAAAAAATGAAGCGGCCAGCCCAGCGCCGGG
+AGTACCGACCTGCTGAAGGAAGCGCTCGCAAAAAAATGGTGAGGCCATCTCAGCGACGCG
+GATATGGAAGCGTTGAAGGTTGTCGTCAAGGGAAAGCCCTGAGCCCGCAAGCCAAACGCG
+GATATGGAAGCGTTGAAGGTTGTCGTCAAGGGAAAGCCCTGAGCCCGCAAGCCAAACGCG
+CAGACGGATATCCTGAAGGAAGCCCTTGGAAAAAAATGAAGCGGCCAGCCCAGCGCCGGG
+GACGTGGCCACGCTGCGTGAGGCGCTGGGAAAAAACTTCTGACGCCCGGCGCACGGAGAA
+GATATGGAAGCGTTGAAGGTTGTCGTCAAGGGAAAGCCCTGAGCCCGCAAGCCAAACGCG
+GAAAACCATGCATTGAAGGATGTCATCGCAAAAAAGCTGTAGACCCGGCGCATAAGCGCC
+GACATGGAAGCGCTGAAGGTGGTGGTCAAGGGAAAGCCCTGAGCCCGCAAGCCAAGCGCG
+GATATGGAAGCGTTGAAGGTTGTCGTCAAGGGAAAGCCCTGAGCCCGCAAGCCAAACGCG
+GATATGGAAGCGTTGAAGGTTGTCGTCAAGGGAAAGCCCTGAGCCCGCAAGCCAAACGCG
+GATATGGAAGCGTTGAAGGTTGTCGTCAAGGGAAAGCCCTGAGCCCGCAAGCCAAACGCG
+GACGTGGCCACGCTGCGTGAGGCGCTGGGAAAAAACTTCTGACGCCCGGCGCACGGAGAA
+GATATGGAAGCGTTGAAGGTTGTCGTCAAGGGAAAGCCCTGAGCCCGCAAGCCAAACGCG
+GATATGGAAGCGTTGAAGGTTGTCGTCAAGGGAAAGCCCTGAGCCCGCAAGCCAAACGCG
+CAGACGGATATCCTGAAGGAAGCCCTTGGAAAAAAATGAAGCGGCCAGCCCAGCGCCGGG
+GATATGGAAGCGTTGAAGGTTGTCGTCAAGGGAAAGCCCTGAGCCCGCAAGCCAAACGCG
+GATATGGAAGCGTTGAAGGTTGTCGTCAAGGGAAAGCCCTGAGCCCGCAAGCCAAACGCG
+GAGAACCGGGCGCTGAAAGACGTTATCGAAAAAAAGCTTTAAAACCAGCCTTTAAGCGTG
+CAGACGGATATCCTGAAGGAAGCCCTTGGAAAAAAATGAAGCGGCCAGCCCAGCGCCGGG
+CAGACGGATATCCTGAAGGAAGCCCTTGGAAAAAAATGAAGCGGCCAGCCCAGCGCCGGG
+GATATGGAAGCGTTGAAGGTTGTCGTCAAGGGAAAGCCCTGAGCCCGCAAGCCAAACGCG
+GACAAAGCTGCGCTTCAGGACCTTCTGAGCCGAAAGTAGCGAGCCCGCAGGCCAAGCGCG
+AAGGCCGATGTCATTCAGGAAGCCATGGCAAAAAAGTGGTAAAGCTGTCGCAACGTAAAG
+GATATGGAAGCGTTGAAGGTTGTCGTCAAGGGAAAGCCCTGAGCCCGCAAGCCAAACGCG
+GATATGGAAGCGTTGAAGGTTGTCGTCAAGGGAAAGCCCTGAGCCCGCAAGCCAAACGCG
+GATATGGAAGCGTTGAAGGTTGTCGTCAAGGGAAAGCCCTGAGCCCGCAAGCCAAACGCG
+GATATGGAAGCGTTGAAGGTTGTCGTCAAGGGAAAGCCCTGAGCCCGCAAGCCAAACGCG
+GATATGGAAGCGTTGAAGGTTGTCGTCAAGGGAAAGCCCTGAGCCCGCAAGCCAAACGCG
+GACAAGCACATCCTGCAGGACGTGCTCGCAAAAAAGCTCTGACGCCTGCTCGGCGACGCG
+GATATGGAAGCGTTGAAGGTTGTCGTCAAGGGAAAGCCCTGAGCCCGCAAGCCAAACGCG
+CAGACGGATATCCTGAAGGAAGCCCTTGGAAAAAAATGAAGCGGCCAGCCCAGCGCCGGG
+GATATGGAAGCGTTGAAGGTTGTCGTCAAGGGAAAGCCCTGAGCCCGCAAGCCAAACGCG
+GATAATCAACTTCTTAAAGATCTCTTCACAAAAAAAGGCTGGGCCCTGCCACCCAAAGAC
+AAGGCCGAGATCATCCAGGAAGCGATGGCAAAAAAGTGGTGAAGCCATCTCGGCGGCGAG
+GATATGGAAGCGTTGAAGGTTGTCGTCAAGGGAAAGCCCTGAGCCCGCAAGCCAAACGCG
+GATATGGAAGCGTTGAAGGTTGTCGTCAAGGGAAAGCCCTGAGCCCGCAAGCCAAACGCG
+CAGACGGATATCCTGAAGGAAGCCCTTGGAAAAAAATGAAGCGGCCAGCCCAGCGCCGGG
+GATATGGAAGCGTTGAAGGTTGTCGTCAAGGGAAAGCCCTGAGCCCGCAAGCCAAACGCG
+GATATGGAAGCGTTGAAGGTTGTCGTCAAGGGAAAGCCCTGAGCCCGCAAGCCAAACGCG
+GATATGGAAGCGTTGAAGGTTGTCGTCAAGGGAAAGCCCTGAGCCCGCAAGCCAAACGCG
+GATATGGAAGCGTTGAAGGTTGTCGTCAAGGGAAAGCCCTGAGCCCGCAAGCCAAACGCG
+AAGGCCGAGCTCCGTCAGGAAGCGCTGGAGGGAAAGTTGTAAGGCCATCTCAACGCCGGG
+CAGACGGATATCCTGAAGGAAGCCCTTGGAAAAAAATGAAGCGGCCAGCCCAGCGCCGGG
+GATATGGAAGCGTTGAAGGTTGTCGTCAAGGGAAAGCCCTGAGCCCGCAAGCCAAACGCG
+GATATGGAAGCGTTGAAGGTTGTCGTCAAGGGAAAGCCCTGAGCCCGCAAGCCAAACGCG
+GATATGGAAGCGTTGAAGGTTGTCGTCAAGGGAAAGCCCTGAGCCCGCAAGCCAAACGCG
+GACGTGGCCACGCTGCGTGAGGCGCTGGGAAAAAACTTCTGACGCCCGGCGCACGGAGAA
+GATATGGAAGCGTTGAAGGTTGTCGTCAAGGGAAAGCCCTGAGCCCGCAAGCCAAACGCG
+GATATGGAAGCGTTGAAGGTTGTCGTCAAGGGAAAGCCCTGAGCCCGCAAGCCAAACGCG
+GATATGGAAGCGTTGAAGGTTGTCGTCAAGGGAAAGCCCTGAGCCCGCAAGCCAAACGCG
+CAGACGGATATCCTGAAGGAAGCCCTTGGAAAAAAATGAAGCGGCCAGCCCAGCGCCGGG
+GATATGGAAGCGTTGAAGGTTGTCGTCAAGGGAAAGCCCTGAGCCCGCAAGCCAAACGCG
+CTGGACAATGCAGCCCTGAAGGATCTTCTGGGAAAGAAGTGGTGACGCCCGCGGCCAAGC
+GATATGGAAGCGTTGAAGGTTGTCGTCAAGGGAAAGCCCTGAGCCCGCAAGCCAAACGCG
+GATATGGAAGCGTTGAAGGTTGTCGTCAAGGGAAAGCCCTGAGCCCGCAAGCCAAACGCG
+GATATGGAAGCGTTGAAGGTTGTCGTCAAGGGAAAGCCCTGAGCCCGCAAGCCAAACGCG
+CAGACGGATATCCTGAAGGAAGCCCTTGGAAAAAAATGAAGCGGCCAGCCCAGCGCCGGG
+GATATGGAAGCGTTGAAGGTTGTCGTCAAGGGAAAGCCCTGAGCCCGCAAGCCAAACGCG
+GATATGGAAGCGTTGAAGGTTGTCGTCAAGGGAAAGCCCTGAGCCCGCAAGCCAAACGCG
+CAGACGGATATCCTGAAGGAAGCCCTTGGAAAAAAATGAAGCGGCCAGCCCAGCGCCGGG
+GAATGCCGGGCGCTGAAAGACGTCATCGAAAAAAAGCTTTAAANCCAGCGATAAAGCGTG
+GATATGGAAGCGTTGAAGGTTGTCGTCAAGGGAAAGCCCTGAGCCCGCAAGCCAAACGCG
+GAGAATACAGCCCTGAAGGATATTCTCTCAAAAAAGCTTTAAAGCCGTCGGAGAAGCGTA
+GATAAGGAAATGCTGCAGGATGTCATCCGAAAAAAGTTCTGAGGCCGCTGCAGAAGCGCG
+GATGCAGAGGCGCTGAAAGCGGCTTTAGGCCGAAAACGCTGAGCCCCCAGCAAAAGCGTG
+GATAAGGAAATGCTGCAGGATGTCATCCGAAAAAAGTTCTGAGGCCGCTGCAGAAGCGTG
+GATATGGAAGCGTTGAAGGTTGTCGTCAAGGGAAAGCCCTGAGCCCGCAAGCCAAACGCG
+GATATGGAAGCGTTGAAGGTTGTCGTCAAGGGAAAGCCCTGAGCCCGCAAGCCAAACGCG
+GACAAGCAGGCGCTGCAGCACCTTCTCGGAAAAAAATGGTAGGGCCCGCCGCGCTTCGCC
+CAGACGGATATCCTGAAGGAAGCCCTTGGAAAAAAATGAAGCGGCCAGCCCAGCGCCGGG
+GAAAACCATGCATTGAAGGATGTCATCGCAAAAAAGCTGTAGACCCGGCGCATAAGCGCC
+GACGTGGCCACGCTGCGTGAGGCGCTGGGAAAAAACTTCTGACGCCCGGCGCACGGAGAA
+CAGACGGATATCCTGAAGGAAGCCCTTGGAAAAAAATGAAGCGGCCAGCCCAGCGCCGGG
+GATAACCAAATACTCAAAGAGATTTTCGTAAAAAAGGGCTGGGCTCTGCCGCAAAAAGGG
+GATATGGAAGCGTTGAAGGTTGTCGTCAAGGGAAAGCCCTGAGCCCGCAAGCCAAACGCG
+CAGACGGATATCCTGAAGGAAGCCCTTGGAAAAAAATGAAGCGGCCAGCCCAGCGCCGGG
+CAGACGGATATCCTGAAGGAAGCCCTTGGAAAAAAATGAAGCGGCCAGCCCAGCGCCGGG
+GATATGGAAGCGTTGAAGGTTGTCGTCAAGGGAAAGCCCTGAGCCCGCAAGCCAAACGCG
+GACCGCTCCATGCTGCAGGATGTGCTCAAGCGAAAGTGGTGAGGCCCGCCGTTCGCCGTG
+GATATGGAAGCGTTGAAGGTTGTCGTCAAGGGAAAGCCCTGAGCCCGCAAGCCAAACGCG
+GACAAAGCGGCGTTGAAGGATCTTCTGGCAAAAAAGTTCTGACGCCCGCCGCGCAGCGGG
+CTCAAAGCGCAAATGCAGGAAGAGATCATAAAAAAGCTATAGCGCCTGCCCTTGAGCGCA
+GATATGGAAGCGTTGAAGGTTGTCGTCAAGGGAAAGCCCTGAGCCCGCAAGCCAAACGCG
+CAGACGGATATCCTGAAGGAAGCCCTTGGAAAAAAATGAAGCGGCCAGCCCAGCGCCGGG
+CAGACGGATATCCTGAAGGAAGCCCTTGGAAAAAAATGAAGCGGCCAGCCCAGCGCCGGG
+GATATGGAAGCGTTGAAGGTCGTCGTCAAGGGAAAGCCCTGAGCCCGCAAGCCAAACGCG
+AAATCAGATATCCTACAGGATGCTATGTCAAAAAAGTGGTAGCGCCGCTTGGGCGCAAAG
+GATATGGAAGCGTTGAAGGTTGTCGTCAAGGGAAAGCCCTGAGCCCGCAAGCCAAACGCG
+GATATGGAAGCGTTGAAGGTCGTCGTCAAGGGAAAGCCCTGAGCCCGCAAGCCAAACGCG
+CAGACGGATATCCTGAAGGAAGCCCTTGGAAAAAAATGAAGCGGCCAGCCCAGCGCCGGG
+GATATGGAAGCGTTGAAGGTTGTCGTCAAGGGAAAGCCCTGAGCCCGCAAGCCAAACGCG
+GATAAGGAAATGCTGCAGGATGTCATCCGAAAAAAGTTCTGAGGCCGCTGCAGAAGCGTG
+CTGGACAATGCAGCCCTGAAGGATCTTCTGGGAAAGAAGTGGTGACGCCCGCGGCCAAGC
+GATATGGAAGCGTTGAAGGTTGTCGTCAAGGGAAAGCCCTGAGCCCGCAAGCCAAACGCG
+GATAAGGAAATGCTGCAGGATGTCATCCGAAAAAAGTTCTGAGGCCGCTGCAGAAGCGTG
+GATATGGAAGCGTTGAAGGTTGTCGTCAAGGGAAAGCCCTGAGCCCGCAAGCCAAACGCG
+CAGACGGATATCCTGAAGGAAGCCCTTGGAAAAAAATGAAGCGGCCAGCCCAGCGCCGGG
+AGTACCGACCTGCTGAAGGAAGCGCTCGCAAAAAAATGGTGAGGCCATCTCAGCGACGCG
+GACATGGAAGCGCTGAAGGTGGTGGTCAAGGGAAAGCCCTGAGCCCGCAAGCCAAGCGCG
+GATATGGAAGCGTTGAAGGTTGTCGTCAAGGGAAAGCCCTGAGCCCGCAAGCCAAACGCG
+GATATGGAAGCGTTGAAGGTTGTCGTCAAGGGAAAGCCCTGAGCCCGCAAGCCAAACGCG
+GACGTGGCCACGCTGCGTGAGGCGCTGGGAAAAAACTTCTGACGCCCGGCGCACGGAGAA
+GATATGGAAGCGTTGAAGGTTGTCGTCAAGGGAAAGCCCTGAGCCCGCAAGCCAAACGCG
+CAGACGGATATCCTGAAGGAAGCCCTTGGAAAAAAATGAAGCGGCCAGCCCAGCGCCGGG
+GACAAGGAGATGCTGCAGGAAGTTATCAAAAAAAAGTTCTGAGGCCGGCTCAGAAGCGTC
+GATATGGAAGCGTTGAAGGTTGTCGTCAAGGGAAAGCCCTGAGCCCGCAAGCCAAACGCG
+CAGACGGATATCCTGAAGGAAGCCCTTGGAAAAAAATGAAGCGGCCAGCCCAGCGCCGGG
+GATATGGAAGCGTTGAAGGTTGTCGTCAAGGGAAAGCCCTGAGCCCGCAAGCCAAACGCG
+GATATGGAAGCGTTGAAGGTTGTCGTCAAGGGAAAGCCCTGAGCCCGCAAGCCAAACGCG
+GATATGGAAGCGTTGAAGGTTGTCGTCAAGGGAAAGCCCTGAGCCCGCAAGCCAAACGCG
+GAGAATCGGGCATTAAAAGACGTCATCGAAAAAAAGCTTTAAAACCAGCGATAAAGCGTG
+GACATGGAAGCGCTGAAGGTGGTGGTCAAGGGAAAGCCCTGAGCCCGCAAGCCAAGCGCG
+CAGACGGATATCCTGAAGGAAGCCCTTGGAAAAAAATGAAGCGGCCAGCCCAGCGCCGGG
+GAGAATTCGGCGATCAAGGATGTTCTGAACCGAAAATCCTGACGCCGTCGGCCAGGCGCG
+AGTACCGACCTGCTGAAGGAAGCGCTCGCAAAAAAATGGTGAGGCCATCTCAGCGACGCG
+GATATGGAAGCGTTGAAGGTCGTCGTCAAGGGAAAGCCCTGAGCCCGCAAGCCAAACGCG
+GAGTGCCGGGCACTGAAAGACGTCATCGAAAAAAAGCTTTAAAACCAGCGATAAAGCGTG
+GACAAGCACATCCTGCAGGACGTGCTCGCAAAAAAGCTCTGACGCCTGCTCGGCGACGCG
+GATAACGCTGCGCTGAAGGACCTGCTGGGCCGAAAGTGGTGAGCCCACAGGCGCGGCGCG
+GAAAACGAGGCATTGAAGGATGTCATCACAAAAAAGCTCTGAGGCCAGCCGAGAAGCGCG
+CAGACGGATATCCTGAAGGAAGCCCTTGGAAAAAAATGAAGCGGCCAGCCCAGCGCCGGG
+GATAAGGAAATGCTGCAGGATGTCATCCGAAAAAAGTTCTGAGGCCGCTGCAGAAGCGTG
+CAGACGGATATCCTGAAGGAAGCCCTTGGAAAAAAATGAAGCGGCCAGCCCAGCGCCGGG
+GACAACGTGGTGCTGAAGGATCTAGCCACAAAAAAATGGTAACGCCCGGCGCTAAGCGGG
+GATATGGAAGCGTTGAAGGTTGTCGTCAAGGGAAAGCCCTGAGCCCGCAAGCCAAACGCG
+GATATGGAAGCGTTGAAGGTTGTCGTCAAGGGAAAGCCCTGAGCCCGCAAGCCAAACGCG
+GACAAGCACATCCTGCAGGACGTGCTCGCAAAAAAGCTCTGACGCCTGCTCGGCGACGCG
+GAAAATAAAGCAATGAAGGACTTAATAGAAAAAAAGCTCTAAGGCCGCAGGAAAGACGTG
+CAGACGGATATCCTGAAGGAAGCCCTTGGAAAAAAATGAAGCGGCCAGCCCAGCGCCGGG
+GATAACGCGGCGCTGAAGGATCTACTGTCTCGAAAGTAGCAAGCCCGCAGGCCAAGCGCG
+GACGTGGCCACGCTGCGTGAGGCGCTGGGAAAAAACTTCTGACGCCCGGCGCACGGAGAA
+CAGACGGATATCCTGAAGGAAGCCCTTGGAAAAAAATGAAGCGGCCAGCCCAGCGCCGGG
+GATATGGAAGCGTTGAAGGTTGTCGTCAAGGGAAAGCCCTGAGCCCGCAAGCCAAACGCG
+GATGTGTCGACGCTGCGTGAGATGCTGGCAAAAAACTTCTGACGCCCGGTTCGAGGAGGA
+GATCACAAAATCCTGAAGGATATTGTCGAAAAAAAGCTGTGAAGCCAACTGTGCGTCGGG
+CAGACGGATATCCTGAAGGAAGCCCTTGGAAAAAAATGAAGCGGCCAGCCCAGCGCCGGG
+GATATGGAAGCGTTGAAGGTTGTCGTCAAGGGAAAGCCCTGAGCCCGCAAGCCAAACGCG
+CAGACGGATATCCTGAAGGAAGCCCTTGGAAAAAAATGAAGCGGCCAGCCCAGCGCCGGG
+GATAACCAAATACTCAAAGAGATTTTCGTAAAAAAGGGCTGGGCTCTGCCGCAAAAAGGG
+GATATGGAAGCGTTGAAGGTTGTCGTCAAGGGAAAGCCCTGAGCCCGCAAGCCAAACGCG
+GATATGGAAGCGTTGAAGGTTGTCGTCAAGGGAAAGCCCTGAGCCCGCAAGCCAAACGCG
+GAGAACGAGGCCTTGAAGGACGTCATTGCAAAAAAGCTTTGAGGCCAGCCGAGAAGCGCG
+GATAAGCAGATGCTTCAGGACGTTCTCTCAAAAAAGTTCTAAAGCCAGCCCAGAGGCGAA
+GATAAGGAAATGCTGCAGGATGTCATCCGAAAAAAGTTCTGAGGCCGCTGCAGAAGCGTG
+GATATGGAAGCGTTGAAGGTCGTCGTCAAGGGAAAGCCCTGAGCCCGCAAGCCAAACGCG
+GATATGGAAGCGTTGAAGGTTGTCGTCAAGGGAAAGCCCTGAGCCCGCAAGCCAAACGCG
+GAATGCCGGACGCTGAAAGATGTCATCGAAAAAAAGCTTTAAAACCAGCGATAAAGCGTG
+GACCGCTCCATGCTGCAGGATGTGCTCAAGCGAAAGTGGTGAGGCCCGCCGTTCGCCGTG
+GACATCCGGATGCTGAAGGATGTGAACTCAAAAAACTGGTAGAGCCCGCCACTCGTCGTG
+CAGACGGATATCCTGAAGGAAGCCCTTGGAAAAAAATGAAGCGGCCAGCCCAGCGCCGGG
+GACCGCTCCATGCTGCAGGATGTGCTCAAGCGAAAGTGGTGAGGCCCGCCGTTCGCCGTG
+GATATGGAAGCGTTGAAGGTTGTCGTCAAGGGAAAGCCCTGAGCCCGCAAGCCAAACGCG
+GATATGGAAGCGTTGAAGGTTGTCGTCAAGGGAAAGCCCTGAGCCCGCAAGCCAAACGCG
+GATATGGAAGCGTTGAAGGTTGTCGTCAAGGGAAAGCCCTGAGCCCGCAAGCCAAACGCG
+GATCATGAAATTCTTAAGGATGTCGTCGCAAAAAAACTTTAACGGTTCCCGAAAAACGTA
+GATATGGAAGCGTTGAAGGTTGTCGTCAAGGGAAAGCCCTGAGCCCGCAAGCCAAACGCG
+AAGGCCGAGATCATCCAGGAAGCGATGGCAAAAAAGTGGTGAAGCCATCTCGGCGGCGAG
+GATATGGAAGCGTTGAAGGTTGTCGTCAAGGGAAAGCCCTGAGCCCGCAAGCCAAACGCG
+GATATGGAAGCGTTGAAGGTTGTCGTCAAGGGAAAGCCTTGAGCCCGCAAGCCAAACGCG
+GATATGGAAGCGTTGAAGGTTGTCGTCAAGGGAAAGCCCTGAGCCCGCAAGCCAAACGCG
+AAAGCCGAGATTATTCAGGAAGCCATGATAAAAAAGTGGTAAAGCCTGCTCAGCGTCGAC
+GATATGGAAGCGTTGAAGGTCGTCGTCAAGGGAAAGCCCTGAGCCCGCAAGCCAAACGCG
+GATATGGAAGCGTTGAAGGTTGTCGTCAAGGGAAAGCCCTGAGCCCGCAAGCCAAACGCG
+CAGACGGATATCCTGAAGGAAGCCCTTGGAAAAAAATGAAGCGGCCAGCCCAGCGCCGGG
+GATATGGAAGCGTTGAAGGTTGTCGTCAAGGGAAAGCCCTGAGCCCGCAAGCCAAACGCG
+GATATGGAAGCGTTGAAGGTTGTCGTCAAGGGAAAGCCCTGAGCCCGCAAGCCAAACGCG
+GATATGGAAGCGTTGAAGGTTGTCGTCAAGGGAAAGCCCTGAGCCCGCAAGCCAAACGCG
+GACAAGGTGATGCTGCAGGAAGTTATCAAAAAA---------AGTTCTGAGGCCGGCTCA
+GATATGGAAGCGTTGAAGGTTGTCGTCAAGGGAAAGCCCTGAGCCCGCAAGCCAAACGCG
+GAAAATCGCGCGTTAAAAGACGTCATTGAAAAAAAGCTTTAAAACCAGCGATAAACGTGA
+GATATGGAAGCGTTGAAGGTTGTCGTCAAGGGAAAGCCCTGAGCCCGCAAGCCAAACGCG
+GACGTGGCCACGCTGCGTGAGGCGCTGGGAAAAAACTTCTGACGCCCGGCGCACGGAGAA
+GATATGGAAGCGTTGAAGGTTGTCGTCAAGGGAAAGCCCTGAGCCCGCAAGCCAAACGCG
+CAGACGGATATCCTGAAGGAAGCCCTTGGAAAAAAATGAAGCGGCCAGCCCAGCGCCGGG
+CAGACGGATATCCTGAAGGAAGCCCTTGGAAAAAAATGAAGCGGCCAGCCCAGCGCCGGG
+GATATGGAAGCGTTGAAGGTCGTCGTCAAGGGAAAGCCCTGAGCCCGCAAGCCAAACGCG
+AAGGCCGAGATCGTTGCGGAGGCGTTCGAAAAAACGTGGTGAAGCCATCTCGCCGCCGCG
+GAGAATTACGCACTGAAGGATCTCATTGAGAAAAAGCTCTGAGGCCACTGGATAAGCGCG
+GATATGGAAGCGTTGAAGGTTGTCGTCAAGGGAAAGCCCTGAGCCCGCAAGCCAAACGCG
+GATATGGAAGCGTTGAAGGTTGTCGTCAAGGGAAAGCCCTGAGCCCGCAAGCCAAACGCG
+GATAAGGAAATGCTGCAGGATGTCATCCGAAAAAAGTTCTGAGGCCGCTGCAGAAGCGCG
+GATAAGGAAATGCTGCAGGATGTCATCCGAAAAAAGTTCTGAGGCCGCTGCAGAAGCGTG
+GATATGGAAGCGTTGAAGGTTGTCGTCAAGGGAAAGCCCTGAGCCCGCAAGCCAAACGCG
+GACGTGGCCACGCTGCGTGAGGCGCTGGGAAAAAACTTCTGACGCCCGGCGCACGGAGAA
+CAGACGGATATCCTGAAGGAAGCCCTTGGAAAAAAATGAAGCGGCCAGCCCAGCGCCGGG
+CAGACGGATATCCTGAAGGAAGCCCTTGGAAAAAAATGAAGCGGCCAGCCCAGCGCCGGG
+GACAAAGCGGCGTTGAAGGATCTTCTGGCAAAAAAGTTCTGACGCCCGCCGCGCAGCGGG
+GATATGGAAGCGTTGAAGGTTGTCGTCAAGGGAAAGCCCTGAGCCCGCAAGCCAAACGCG
+GATATGGAAGCGTTGAAGGTTGTCGTCAAGGGAAAGCCCTGAGCCCGCAAGCCAAACGCG
+GACAAAGCGGCGTTGAAGGATCTTCTGGCAAAAAAGTTCTGACGCCCGCCGCGCAGCGGG
+CAGACGGATATCCTGAAGGAAGCCCTTGGAAAAAAATGAAGCGGCCAGCCCAGCGCCGGG
+GACAAGCACATCCTGCAGGACGTGCTCGCAAAAAAGCTCTGACGCCTGCTCGGCGACGCG
+AAAGCCGAGATCGTGACGGAGGCGCTCGAAAAAAAGTGGTGAGGCCATCTCGCCGCCGCG
+GACGTGGCCACGCTGCGTGAGGCGCTGGGAAAAAACTTCTGACGCCCGGCGCACGGAGAA
+CAGACGGATATCCTGAAGGAAGCCCTTGGAAAAAAATGAAGCGGCCAGCCCAGCGCCGGG
+GACAAAGAGATGCTGCAGGAGGTTATCAAAAAAAAGTTCTAAGGCCGGCGCAGAAGCGCG
+GATATGGAAGCGTTGAAGGTTGTCGTCAAGGGAAAGCCCTGAGCCCGCAAGCCAAACGCG
+GATATGGAAGCGTTGAAGGTTGTCGTCAAGGGAAAGCCCTGAGCCCGCAAGCCAAACGCG
+GATAACGCCGCGATGAAGGATCTGATCGCAAAAAAACTGTAGGGCCGGAGCAGAAGCGCG
+GATAACGCCGCGCTGAAGGACCTGCTGTCTCGAAAGTAGCAAGCCCGCAGGCCAAGCGCG
+GATATGGAAGCGTTGAAGGTTGTCGTCAAGGGAAAGCCCTGAGCCCGCAAGCCAAACGCG
+GATATGGAAGCGTTGAAGGTTGTCGTCAAGGGAAAGCCCTGAGCCCGCAAGCCAAACGCG
+CAGACGGATATCCTGAAGGAAGCCCTTGGAAAAAAATGAAGCGGCCAGCCCAGCGCCGGG
+GATATGGAAGCGTTGAAGGTTGTCGTCAAGGGAAAGCCCTGAGCCCGCAAGCCAAACGCG
+GATAACGCCGCGATGAAGGATCTGATCGCAAAAAAACTGTAGGGCCGGAGCAGAAGCGCG
+GATATGGAAGCGTTGAAGGTTGTCGTCAAGGGAAAGCCCTGAGCCCGCAAGCCAAACGCG
+GATATGGAAGCGTTGAAGGTTGTCGTCAAGGGAAAGCCCTGAGCCCGCAAGCCAAACGCG
+GATATGGAAGCGTTGAAGGTTGTCGTCAAGGGAAAGCCCTGAGCCCGCAAGCCAAACGCG
+GATATGGAAGCGTTGAAGGTTGTCGTCAAGGGAAAGCCCTGAGCCCGCAAGCCAAACGCG
+AAGTCAGATATCCTACAGGATGCTATGTCAAAAAAGTGGTAGCGCCGCTTGGGCGCAAAG
+AAGGCCGATGTCATTCAGGAAGCCATGGCAAAAAAGTGGTAAAGCTGTCGCAACGTAAAG
+GATATGGAAGCGTTGAAGGTTGTCGTCAAGGGAAAGCCCTGAGCCCGCAAGCCAAACGCG
+GATATGGAAGCGTTGAAGGTTGTCGTCAAGGGAAAGCCCTGAGCCCGCAAGCCAAACGCG
+GATATGGAAGCGTTGAAGGTTGTCGTCAAGGGAAAGCCCTGAGCCCGCAAGCCAAACGCG
+GATAAGGAGGCGCTTCAGGTGGCCCTGGGCCGAAAGTTTTGACGACAGACCAGAAGCGGG
+GATATGGAAGCGTTGAAGGTTGTCGTCAAGGGAAAGCCCTGAGCCCGCAAGCCAAACGCG
+CAGACGGATATCCTGAAGGAAGCCCTTGGAAAAAAATGAAGCGGCCAGCCCAGCGCCGGG
+GATATGGAAGCGTTGAAGGTTGTCGTCAAGGGAAAGCCCTGAGCCCGCAAGCCAAACGCG
+CAGACGGATATCCTGAAGGAAGCCCTTGGAAAAAAATGAAGCGGCCAGCCCAGCGCCGGG
+GATATGGAAGCGTTGAAGGTTGTCGTCAAGGGAAAGCCCTGAGCCCGCAAGCCAAACGCG
+CAGACGGATATCCTGAAGGAAGCCCTTGGAAAAAAATGAAGCGGCCAGCCCAGCGCCGGG
+CAGACGGATATCCTGAAGGAAGCCCTTGGAAAAAAATGAAGCGGCCAGCCCAGCGCCGGG
+GACAACGCGGCAATGAAGGACCTGATCGCAAAAAAACTCTAGGGCCGGCGCGTAAACGCG
+AGTACCGACCTGCTGAAGGAAGCGCTCGCAAAAAAATGGTGAGGCCATCTCAGCGACGCG
+GATATGGAAGCGTTGAAGGTTGTCGTCAAGGGAAAGCCCTGAGCCCGCAAGCCAAACGCG
+GATATGGAAGCGTTGAAGGTTGTCGTCAAGGGAAAGCCCTGAGCCCGCAAGCCAAACGCG
+CAGACGGATATCCTGAAGGAAGCCCTTGGAAAAAAATGAAGCGGCCAGCCCAGCGCCGGG
+GATAACGCCGCGATGAAGGATCTGATCGCAAAAAAACTGTAGGGCCGGAGCAGAAGCGCG
+GATATGGAAGCGTTGAAGGTTGTCGTCAAGGGAAAGCCCTGAGCCCGCAAGCCAAACGCG
+GATATGGAAGCGTTGAAGGTCGTCGTCAAGGGAAAGCCCTGAGCCCGCAAGCCAAACGCG
+GAAAACCATGCATTGAAGGATGTCATCGCAAAAAAGCTGTAGACCCGGCGCATAAGCGCC
+GACGTGGCCACGCTGCGTGAGGCGCTGGGAAAAAACTTCTGACGCCCGGCGCACGGAGAA
+GATATGGAAGCGTTGAAGGTTGTCGTCAAGGGAAAGCCCTGAGCCCGCAAGCCAAACGCG
+CAGACGGATATCCTGAAGGAAGCCCTTGGAAAAAAATGAAGCGGCCAGCCCAGCGCCGGG
+GACGTGGCCACGCTGCGTGAGGCGCTGGGAAAAAACTTCTGACGCCCGGCGCACGGAGAA
+CAGACGGATATCCTGAAGGAAGCCCTTGGAAAAAAATGAAGCGGCCAGCCCAGCGCCGGG
+GAATGCCGGGCGCTGAAAGACGTCATCGAAAAAAAGCTTTAAANCCAGCGATAAAGCGTG
+GATATGGAAGCGTTGAAGGTTGTCGTCAAGGGAAAGCCCTGAGCCCGCAAGCCAAACGCG
+GAGAACGAGGCCTTGAAGGACGTCATTGCAAAAAAGCTTTGAGGCCAGCCGAGAAGCGCG
+GATATGGAAGCGTTGAAGGTTGTCGTCAAGGGAAAGCCCTGAGCCCGCAAGCCAAACGCG
+GATATGGAAGCGTTGAAGGTTGTCGTCAAGGGAAAGCCCTGAGCCCGCAAGCCAAACGCG
+GATATGGAAGCGTTGAAGGTTGTCGTCAAGGGAAAGCCCTGAGCCCGCAAGCCAAACGCG
+GATATCCAGATGCTCAAGGAGATCAATTCAAAAAAGTGGTAACGCCCGAGGCGAAGCGCA
+GATATGGAAGCGTTGAAGGTTGTCGTCAAGGGAAAGCCCTGAGCCCGCAAGCCAAACGCG
+GATATGGAAGCGTTGAAGGTTGTCGTCAAGGGAAAGCCCTGAGCCCGCAAGCCAAACGCG
+GAAAACCATGCATTGAAGGATGTCATCGCAAAAAAACTGTAGACCCGGCGCACAAGCGCC
+GATATGGAAGCGTTGAAGGTTGTCGTCAAGGGAAAGCCCTGAGCCCGCAAGCCAAACGCG
+CAGACGGATATCCTGAAGGAAGCCCTTGGAAAAAAATGAAGCGGCCAGCCCAGCGCCGGG
+CTCGACAACGCCGCGTTGAAAGACCTTTTGGGAAAGAAGTGGTGACGCCCGCAGCCCAGC
+CAGACGGATATCCTGAAGGAAGCCCTTGGAAAAAAATGAAGCGGCCAGCCCAGCGCCGGG
+GATATGGAAGCGTTGAAGGTTGTCGTCAAGGGAAAGCCCTGAGCCCGCAAGCCAAACGCG
+CAGACGGATATCCTGAAGGAAGCCCTTGGAAAAAAATGAAGCGGCCAGCCCAGCGCCGGG
+GACAAGGCGATGCTGACCGACGTATTGAAAAAAAAGTGGTGAAGTCCTCGCCGAGGCGCC
+GACAAGCACATCCTGCAGGACGTGCTCGCAAAAAAGCTCTGACGCCTGCTCGGCGACGCG
+GATATGGAAGCGTTGAAGGTTGTCGTCAAGGGAAAGCCCTGAGCCCGCAAGCCAAACGCG
+GATATGGAAGCGTTGAAGGTTGTCGTCAAGGGAAAGCCCTGAGCCCGCAAGCCAAACGCG
+GATATGGAAGCGTTGAAGGTTGTCGTCAAGGGAAAGCCCTGAGCCCGCAAGCCAAACGCG
+CAGACGGATATCCTGAAGGAAGCCCTTGGAAAAAAATGAAGCGGCCAGCCCAGCGCCGGG
+GAAAACCATGCATTGAAGGATGTCATCGCAAAAAAGCTGTAGACCCGGCGCATAAGCGCC
+GAAAACCATGCATTGAAGGATGTCATCGCAAAAAAGCTGTAGACCCGGCGCATAAGCGCC
+GATAACGCCGCGCTGAAGGACCTGCTGTCTCGAAAGTAGCAAGCCCGCAGGCCAAGCGCG
+GATATGGAAGCGTTGAAGGTTGTCGTCAAGGGAAAGCCCTGAGCCCGCAAGCCAAACGCG
+GAATGCCGTGCGCTGAAAGACGTCATCGAGAAAAAGCTTTAAAACCAGCGATAAAGCGTG
+CAGACGGATATCCTGAAGGAAGCCCTTGGAAAAAAATGAAGCGGCCAGCCCAGCGCCGGG
+CAGACGGATATCCTGAAGGAAGCCCTTGGAAAAAAATGAAGCGGCCAGCCCAGCGCCGGG
+CAGACGGATATCCTGAAGGAAGCCCTTGGAAAAAAATGAAGCGGCCAGCCCAGCGCCGGG
+CAGACGGATATCCTGAAGGAAGCCCTTGGAAAAAAATGAAGCGGCCAGCCCAGCGCCGGG
+AAAGCCGAGATCGTGACGGAGGCGCTCGAAAAAAAGTGGTGAGGCCATCTCGCCGCCGCG
+GACCGCTCCATGCTGCAGGATGTGCTCAAGCGAAAGTGGTGAGGCCCGCCGTTCGCCGTG
+CAGACGGATATCCTGAAGGAAGCCCTTGGAAAAAAATGAAGCGGCCAGCCCAGCGCCGGG
+CAGACGGATATCCTGAAGGAAGCCCTTGGAAAAAAATGAAGCGGCCAGCCCAGCGCCGGG
+GATATGGAAGCGTTGAAGGTTGTCGTCAAGGGAAAGCCCTGAGCCCGCAAGCCAAACGCG
+CAGACGGATATCCTGAAGGAAGCCCTTGGAAAAAAATGAAGCGGCCAGCCCAGCGCCGGG
+CTGGACAACGTCGCGCTGAAGGATCTCCTGGGAAAGAAGTGGTGACGCCCGCTGCCGAGC
+GATATGGAAGCGTTGAAGGTTGTCGTCAAGGGAAAGCCCTGAGCCCGCAAGCCAAACGCG
+CAGACGGATATCCTGAAGGAAGCCCTTGGAAAAAAATGAAGCGGCCAGCCCAGCGCCGGG
+GATATGGAAGCGTTGAAGGTTGTCGTCAAGGGAAAGCCCTGAGCCCGCAAGCCAAACGCG
+GATATGGAAGCGTTGAAGGTTGTCGTCAAGGGAAAGCCCTGAGCCCGCAAGCCAAACGCG
+CAGACGGATATCCTGAAGGAAGCCCTTGGAAAAAAATGAAGCGGCCAGCCCAGCGCCGGG
+GACAAGGCCATGCTGCAGGATGTGCTGTCAAAAAAGCTCTGAAGCCTTCCCGGCGCCGTG
+GATAAGGAAATGCTGCAGGATGTCATCCGAAAAAAGTTCTGAGGCCGCTGCAGAAGCGTG
+GACATCGAGTCGCTGAAAGTGGTCGCCCGGGGAAAAGGGTAAGCCCGACAGCACGGCGGG
+GATATGGAAGCGTTGAAGGTTGTCGTCAAGGGAAAGCCCTGAGCCCGCAAGCCAAACGCG
+GATATGGAAGCGTTGAAGGTTGTCGTCAAGGGAAAGCCCTGAGCCCGCAAGCCAAACGCG
+GATATGGAAGCGTTGAAGGTTGTCGTCAAGGGAAAGCCCTGAGCCCGCAAGCCAAACGCG
+GACAAAGAGATGCTGCAGGAGGTACTGAAGCAAAAGTTCTGAGGCCGGCTCAGAAGCGCC
+GATATGGAAGCGTTGAAGGTTGTCGTCAAGGGAAAGCCCTGAGCCCGCAAGCCAAACGCG
+GATATGGAAGCGTTGAAGGTTGTCGTCAAGGGAAAGCCCTGAGCCCGCAAGCCAAACGCG
+GATATGGAAGCGTTGAAGGTTGTCGTCAAGGGAAAGCCCTGAGCCCGCAAGCCAAACGCG
+GATATGGAAGCGTTGAAGGTTGTCGTCAAGGGAAAGCCCTGAGCCCGCAAGCCAAACGCG
+GACGTGGCCACGCTGCGTGAGGCGCTGGGAAAAAACTTCTGACGCCCGGCGCACGGAGAA
+GATATGGAAGCGTTGAAGGTTGTCGTCAAGGGAAAGCCCTGAGCCCGCAAGCCAAACGCG
+AAGGCCGAGATCGTGGCGGAGGCGCTCGCAAAAAAAGATTGAGGCCATCTTGCCGGCGTG
+GATATGGAAGCGTTGAAGGTTGTCGTCAAGGGAAAGCCCTGAGCCCGCAAGCCAAACGCG
+GACGTGGCCACGCTGCGTGAGGCGCTGGGAAAAAACTTCTGACGCCCGGCGCACGGAGAA
+GATATGGAAGCGTTGAAGGTTGTCGTCAAGGGAAAGCCCTGAGCCCGCAAGCCAAACGCG
+GACAAGGCTGCGCTTCAGGACCTTTTGAGCCGAAAGTAGCAAGCCCGCAGGCCAAACGCG
+GATATGGAAGCGTTGAAGGTTGTCGTCAAGGGAAAGCCCTGAGCCCGCAAGCCAAACGCG
+GATCATGAAATTCTTAAGGATGTCGTCGCAAAAAAACTTTAACGGTTCCCGAAAAACGTA
+GATATGGAAGCGTTGAAGGTTGTCGTCAAGGGAAAGCCCTGAGCCCGCAAGCCAAACGCG
+GATATGGAAGCGTTGAAGGTTGTCGTCAAGGGAAAGCCCTGAGCCCGCAAGCCAAACGCG
+GATATGGAAGCGTTGAAGGTTGTCGTCAAGGGAAAGCCCTGAGCCCGCAAGCCAAACGCG
+CAGACGGATATCCTGAAGGAAGCCCTTGGAAAAAAATGAAGCGGCCAGCCCAGCGCCGGG
+GATAAGGAAATGCTGCAGGATGTCATCCGAAAAAAGTTCTGAGGCCGCTGCAGAAGCGTG
+GATATGGAAGCGTTGAAGGTTGTCGTCAAGGGAAAGCCCTGAGCCCGCAAGCCAAACGCG
+GATAAAGAGGCGCTTCAGGTGGCTCTTGGGCGAAAGTACTGACGACAGACCAGAAGCGGG
+GACCGGGAAGTTTTGAGGTCGGTGATTCGAAAAAACGGCTGGAGCTTGCCGGCCTGAGAG
+CAGACGGATATCCTGAAGGAAGCCCTTGGAAAAAAATGAAGCGGCCAGCCCAGCGCCGGG
+GATATTGTGGGCTTCAAGGCGGTGCTGTCAAAAAAGTGGTAGGCCCACAGGCGGAGCGAG
+GATATGGAAGCGTTGAAGGTTGTCGTCAAGGGAAAGCCCTGAGCCCGCAAGCCAAACGCG
+GATGCAGCCGCGCTCCGCGAGCTTCTTGCAAAAAAATGGTAGGGCCTGCCGCCAAGCGTG
+GATATGGAAGCGTTGAAGGTTGTCGTCAAGGGAAAGCCCTGAGCCCGCAAGCCAAACGCG
+GATATGGAAGCGTTGAAGGTTGTCGTCAAGGGAAAGCCCTGAGCCCGCAAGCCAAACGCG
+GATATGGAAGCGTTGAAGGTTGTCGTCAAGGGAAAGCCCTGAGCCCGCAAGCCAAACGCG
+GACAAGGCTGCGCTTCAGGACCTTTTGAGCCGAAAGTAGCAAGCCCGCAGGCCAAACGCG
+GATATGGAAGCGTTGAAGGTTGTCGTCAAGGGAAAGCCCTGAGCCCGCAAGCCAAACGCG
+GATATGGAAGCGTTGAAGGTTGTCGTCAAGGGAAAGCCCTGAGCCCGCAAGCCAAACGCG
+GATAAGGAAATGCTGCAGGATGTCATCCGAAAAAAGTTCTGAGGCCGCTGCAGAAGCGCG
+GAAGCCTCGGCGCTGCGCGAGCTTCTGTCAAAAAAATGGTAGGGCCCGCCGTTAAGCGCG
+AAAGCTGAAATACTCAAAGAGGCCATCGAAAAAAAGTGGTAAAGCCGTCGCGGCGGCGGG
+GATAAGGAAATGCTGCAGGATGTCATCCGAAAAAAGTTCTGAGGCCGCTGCAGAAGCGTG
+GATATGGAAGCGTTGAAGGTTGTCGTCAAGGGAAAGCCCTGAGCCCGCAAGCCAAACGCG
+GAATGCCGGGCGTTGAAAGATGTTATCGAAAAAAAGCTTTAAAACCAGCGATAAAGCGTG
+GATATGGAAGCGTTGAAGGTTGTCGTCAAGGGAAAGCCCTGAGCCCGCAAGCCAAACGCG
+GATATGGAAGCGTTGAAGGTTGTCGTCAAGGGAAAGCCCTGAGCCCGCAAGCCAAACGCG
+GATATGGAAGCGTTGAAGGTTGTCGTCAAGGGAAAGCCCTGAGCCCGCAAGCCAAACGCG
+CAGACGGATATCCTGAAGGAAGCCCTTGGAAAAAAATGAAGCGGCCAGCCCAGCGCCGGG
+GAAAACCATGCATTGAAGGATGTCATCGCAAAAAAGCTGTAGACCCGGCGCATAAGCGCC
+GATATGGAAGCGTTGAAGGTTGTCGTCAAGGGAAAGCCCTGAGCCCGCAAGCCAAACGCG
+CAGACGGATATCCTGAAGGAAGCCCTTGGAAAAAAATGAAGCGGCCAGCCCAGCGCCGGG
+CAGACGGATATCCTGAAGGAAGCCCTTGGAAAAAAATGAAGCGGCCAGCCCAGCGCCGGG
+GATATGGAAGCGTTGAAGGTTGTCGTCAAGGGAAAGCCCTGAGCCCGCAAGCCAAACGCG
+GAGAACGAGGCCTTGAAGGACGTCATTACAAAAAAGCTTTGAGGCCAGCCGAGAAGCGCG
+GACATCGAGTCGCTGAAAGTGGTCGCCCGGGGAAAAGGGTAAGCCCGACAGCACGGCGGG
+GATATGGAAGCGTTGAAGGTTGTCGTCAAGGGAAAGCCCTGAGCCCGCAAGCCAAACGCG
+CAGACGGATATCCTGAAGGAAGCCCTTGGAAAAAAATGAAGCGGCCAGCCCAGCGCCGGG
+GAATGCCGGGCGCTGAAAGACGTCATCGAAAAAAAGCTTTAAAACCAGCGATAAAGCGTG
+GATATGGAAGCGTTGAAGGTTGTCGTCAAGGGAAAGCCCTGAGCCCGCAAGCCAAACGCG
+CAGACGGATATCCTGAAGGAAGCCCTTGGAAAAAAATGAAGCGGCCAGCCCAGCGCCGGG
+GATATGGAAGCGTTGAAGGTTGTCGTCAAGGGAAAGCCCTGAGCCCGCAAGCCAAACGCG
+GATATGGAAGCGTTGAAGGTTGTCGTCAAGGGAAAGCCCTGAGCCCGCAAGCCAAACGCG
+GAGAATACAGCCCTGAAGGATATTCTCTCAAAAAAGCTTTAAAGCCGTCGGAGAAGCGTA
+GATATGGAAGCGTTGAAGGTTGTCGTCAAGGGAAAGCCCTGAGCCCGCAAGCCAAACGCG
+GACAATGCGGCGCTGAAGGATCTTCTCACAAAAAAATGGTGACGCCCGCCGTTCAGCGGG
+CAGACGGATATCCTGAAGGAAGCCCTTGGAAAAAAATGAAGCGGCCAGCCCAGCGCCGGG
+AAAGCTGAAATACTCAAAGAGGCCATCGAAAAAAAGTGGTAAAGCCGTCGCGGCGGCGGG
+CAGACGGATATCCTGAAGGAAGCCCTTGGAAAAAAATGAAGCGGCCAGCCCAGCGCCGGG
+GATATGGAAGCGTTGAAGGTTGTCGTCAAGGGAAAGCCCTGAGCCCGCAAGCCAAACGCG
+CAGACGGATATCCTGAAGGAAGCCCTTGGAAAAAAATGAAGCGGCCAGCCCAGCGCCGGG
+GATATGGAAGCGTTGAAGGTCGTCGTCAAGGGAAAGCCCTGAGCCCGCAAGCCAAACGCG
+GAGCACGAGGTCTTGAAGGACATCATAGCAAAAAAGCTCTGAGGCCAACCGAGAAGCGGG
+GAGCACGAGGTCTTGAAGGACATCATAGCAAAAAAGCTCTGAGGCCAACCGAGAAGCGGG
+GATAAGGAGGCGCTTCAGGTGGCTCTTGGGCGAAAGTACTGACGACAGACCAGAAGCGGG
+GATATGGAAGCGTTGAAGGTTGTCGTCAAGGGAAAGCCCTGAGCCCGCAAGCCAAACGCG
+GACAACGCGGCCATGAAGGATCTCATCGCAAAGAAACTCTAGGGCCGGCGCGCGAGCGCG
+GATAAGGAAATGCTGCAGGATGTCATCCGAAAAAAGTTCTGAGGCCGCTGCAGAAGCGCG
+GATATGGAAGCGTTGAAGGTTGTCGTCAAGGGAAAGCCCTGAGCCCGCAAGCCAAACGCG
+CAGAACGATCTGCTGAAGGAAGCCCTTGGAAAAAAGTGGTGAGGCCGTCTCAAAGACGCG
+GATATGGAAGCGTTGAAGGTTGTCGTCAAGGGAAAGCCCTGAGCCCGCAAGCCAAACGCG
+GATATGGAAGCGTTGAAGGTTGTCGTCAAGGGAAAGCCCTGAGCCCGCAAGCCAAACGCG
+GACAAGGAGATGCTGCAGGAGGTACTGAAGCAAAAGTTCTGAGGCCGGCTCAGAAGCGCC
+CAGACGGATATCCTGAAGGAAGCCCTTGGAAAAAAATGAAGCGGCCAGCCCAGCGCCGGG
+GATAACCAAATACTCAAAGAGATTTTCGTAAAAAAGGGCTGGGCTCTGCCGCAAAAAGGG
+GATATGGAAGCGTTGAAGGTTGTCGTCAAGGGAAAGCCCTGAGCCCGCAAGCCAAACGCG
+GATATGGAAGCGTTGAAGGTTGTCGTCAAGGGAAAGCCCTGAGCCCGCAAGCCAAACGCG
+GATATGGAAGCGTTGAAGGTTGTCGTCAAGGGAAAGCCCTGAGCCCGCAAGCCAAACGCG
+GATATGGAAGCGTTGAAGGTTGTCGTCAAGGGAAAGCCCTGAGCCCGCAAGCCAAACGCG
+GATATGGAAGCGTTGAAGGTTGTCGTCAAGGGAAAGCCCTGAGCCCGCAAGCCAAACGCG
+GATATGGAAGCGTTGAAGGTTGTCGTCAAGGGAAAGCCCTGAGCCCGCAAGCCAAACGCG
+GATATGGAAGCGTTGAAGGTTGTCGTCAAGGGAAAGCCCTGAGCCCGCAAGCCAAACGCG
+GATATGGAAGCGTTGAAGGTTGTCGTCAAGGGAAAGCCCTGAGCCCGCAAGCCAAACGCG
+GATATGGAAGCGTTGAAGGTCGTCGTCAAGGGAAAGCCCTGAGCCCGCAAGCCAAACGCG
+CAGACGGATATCCTGAAGGAAGCCCTTGGAAAAAAATGAAGCGGCCAGCCCAGCGCCGGG
+GATAATGTGGCTTTGAAGGATCTTTTATCAAAAAAGTGGTAGGCCCGCAGGCTAAGAGAA
+GATATGGAAGCGTTGAAGGTTGTCGTCAAGGGAAAGCCCTGAGCCCGCAAGCCAAACGCG
+CAGACGGATATCCTGAAGGAAGCCCTTGGAAAAAAATGAAGCGGCCAGCCCAGCGCCGGG
+CAGACGGATATCCTGAAGGAAGCCCTTGGAAAAAAATGAAGCGGCCAGCCCAGCGCCGGG
+CAGACGGATATCCTGAAGGAAGCCCTTGGAAAAAAATGAAGCGGCCAGCCCAGCGCCGGG
+GATATGGAAGCGTTGAAGGTTGTCGTCAAGGGAAAGCCCTGAGCCCGCAAGCCAAACGCG
+GACATGGAAGCGCTGAAGGTGGTGGTCAAGGGAAAGCCCTGAGCCCACAAGCCAAGCGCG
+GATATGGAAGCGTTGAAGGTTGTCGTCAAGGGAAAGCCCTGAGCCCGCAAGCCAAACGCG
+AGTACCGACCTGCTGAAGGAAGCGCTCGCAAAAAAATGGTGAGGCCATCTCAGCGACGCG
+GATATGGAAGCGTTGAAGGTTGTCGTCAAGGGAAAGCCCTGAGCCCGCAAGCCAAACGCG
+GAAAACCATGCATTGAAGGATGTCATCGCAAAAAAACTGTAGACCCGGCGCACAAGCGCC
+GATATGGAAGCGTTGAAGGTTGTCGTCAAGGGAAAGCCCTGAGCCCGCAAGCCAAACGCG
+CAGACGGATATCCTGAAGGAAGCCCTTGGAAAAAAATGAAGCGGCCAGCCCAGCGCCGGG
+GATATGGAAGCGTTGAAGGTTGTCGTCAAGGGAAAGCCCTGAGCCCGCAAGCCAAACGCG
+CAGACGGATATCCTGAAGGAAGCCCTTGGAAAAAAATGAAGCGGCCAGCCCAGCGCCGGG
+GACGTGGCCACGCTGCGTGAGGCGCTGGGAAAAAACTTCTGACGCCCGGCGCACGGAGAA
+GATATGGAAGCGTTGAAGGTTGTCGTCAAGGGAAAGCCCTGAGCCCGCAAGCCAAACGCG
+GACAAAGCGGCGTTGAAGGATCTTCTGGCAAAAAAGTTCTGACGCCCGCCGCGCAGCGGG
+GATATGGAAGCGTTGAAGGTTGTCGTCAAGGGAAAGCCCTGAGCCCGCAAGCCAAACGCG
+GATATGGAAGCGTTGAAGGTTGTCGTCAAGGGAAAGCCCTGAGCCCGCAAGCCAAACGCG
+CAGACGGATATCCTGAAGGAAGCCCTTGGAAAAAAATGAAGCGGCCAGCCCAGCGCCGGG
+GATATGGAAGCGTTGAAGGTTGTCGTCAAGGGAAAGCCCTGAGCCCGCAAGCCAAACGCG
+GAAAATCGCGCGTTAAAAGACGTCATTGAAAAAAAGCTTTAAAACCAGCGATAAAGCGTG
+GACGTGGCCACGCTGCGTGAGGCGCTGGGAAAAAACTTCTGACGCCCGGCGCACGGAGAA
+GATATGGAAGCGTTGAAGGTTGTCGTCAAGGGAAAGCCCTGAGCCCGCAAGCCAAACGCG
+GATAAGGAAATGCTGCAGGATGTCATCCGAAAAAAGTTCTGAGGCCGCTGCAGAAGCGTG
+GATATGGAAGCGTTGAAGGTTGTCGTCAAGGGAAAGCCCTGAGCCCGCAAGCCAAACGCG
+CAGACGGATATCCTGAAGGAAGCCCTTGGAAAAAAATGAAGCGGCCAGCCCAGCGCCGGG
+AAAGCCGAGATCGTGACGGAGGCGCTCGAAAAAAAGTGGTGAGGCCATCTCGCCGCCGCG
+CAGACGGATATCCTGAAGGAAGCCCTTGGAAAAAAATGAAGCGGCCAGCCCAGCGCCGGG
+GATATGGAAGCGTTGAAGGTTGTCGTCAAGGGAAAGCCCTGAGCCCGCAAGCCAAACGCG
+GACATCGAGTCGCTGAAAGTGGTCGCCCGGGGAAAAGGGTAAGCCCGACAGCACGGCGGG
+GATATGGAAGCGTTGAAGGTTGTCGTCAAGGGAAAGCCCTGAGCCCGCAAGCCAAACGCG
+GATATGGAAGCGTTGAAGGTTGTCGTCAAGGGAAAGCCCTGAGCCCGCAAGCCAAACGCG
+GATATGGAAGCGTTGAAGGTTGTCGTCAAGGGAAAGCCCTGAGCCCGCAAGCCAAACGCG
+GATAAGGAAATGCTGCAGGATGTCATCCGAAAAAAGTTCTGAGGCCGCTGCAGAAGCGCG
+GACGTGGCCACGCTGCGTGAGGCGCTGGGAAAAAACTTCTGACGCCCGGCGCACGGAGAA
+GAAAACTATGCACTCAAGGATGTCATCGCAAAAAAGCTATAGACCCGGCGCACAAGCGCC
+CAGACGGATATCCTGAAGGAAGCCCTTGGAAAAAAATGAAGCGGCCAGCCCAGCGCCGGG
+GACGTGGCCACGCTGCGTGAGGCGCTGGGAAAAAACTTCTGACGCCCGGCGCACGGAGAA
+GAAGATAATGCGATTAAGGAGCTTGTCGCAAAAAAGTGATGATGACAGCAGAGAAGC---
+GATATGGAAGCGTTGAAGGTTGTCGTCAAGGGAAAGCCCTGAGCCCGCAAGCCAAACGCG
+GATATGGAAGCGTTGAAGGTTGTCGTCAAGGGAAAGCCCTGAGCCCGCAAGCCAAACGCG
+GACAACGCGATGCTGAAGGACCTCAATTCAAAAAAATGGTGACGCCCGCCGTGAAGCGGC
+GATATGGAAGCGTTGAAGGTTGTCGTCAAGGGAAAGCCCTGAGCCCGCAAGCCAAACGCG
+GATATGGAAGCGTTGAAGGTTGTCGTCAAGGGAAAGCCCTGAGCCCGCAAGCCAAACGCG
+GATATGGAAGCGTTGAAGGTTGTCGTCAAGGGAAAGCCCTGAGCCCGCAAGCCAAACGCG
+CAGACGGATATCCTGAAGGAAGCCCTTGGAAAAAAATGAAGCGGCCAGCCCAGCGCCGGG
+GACGTGGCCACGCTGCGTGAGGCGCTGGGAAAAAACTTCTGACGCCCGGCGCACGGAGAA
+GACAACGCCGTGCTGAAGGAAATTTCCTCAAAAAAATGGTGACGCCCGCCGCCAGGCGGA
+GATATGGAAGCGTTGAAGGTTGTCGTCAAGGGAAAGCCCTGAGCCCGCAAGCCAAACGCG
+GACGTGGCCACGCTGCGTGAGGCGCTGGGAAAAAACTTCTGACGCCCGGCGCACGGAGAA
+GATATGGAAGCGTTGAAGGTCGTCGTCAAGGGAAAGCCCTGAGCCCGCAAGCCAAACGCG
+GATATGGAAGCGTTGAAGGTTGTCGTCAAGGGAAAGCCCTGAGCCCGCAAGCCAAACGCG
+GATATGGAAGCGTTGAAGGTTGTCGTCAAGGGAAAGCCCTGAGCCCGCAAGCCAAACGCG
+CAGACGGATATCCTGAAGGAAGCCCTTGGAAAAAAATGAAGCGGCCAGCCCAGCGCCGGG
+GATATGGAAGCGCTGAAGGTTGTCGTCAAGGGAAAGCCCTGAGCCCGCAAGCCAAACGCG
+GACCGCTCCATGCTGCAGGATGTGCTCAAGCGAAAGTGGTGAGGCCCGCCGTTCGCCGTG
+AGTACCGACCTGCTGAAGGAAGCGCTCGCAAAAAAATGGTGAGGCCATCTCAGCGACGCG
+GATATGGAAGCGTTGAAGGTTGTCGTCAAGGGAAAGCCCTGAGCCCGCAAGCCAAACGCG
+GATAAGGAAATGCTGCAGGATGTCATCCGAAAAAAGTTCTGAGGCCGCTGCAGAAGCGTG
+GATATGGAAGCGTTGAAGGTTGTCGTCAAGGGAAAGCCCTGAGCCCGCAAGCCAAACGCG
+GATATGGAAGCGTTGAAGGTTGTCGTCAAGGGAAAGCCCTGAGCCCGCAAGCCAAACGCG
+GATATGGAAGCGTTGAAGGTTGTCGTCAAGGGAAAGCCCTGAGCCCGCAAGCCAAACGCG
+GATATGGAAGCGTTGAAGGTTGTCGTCAAGGGAAAGCCCTGAGCCCGCAAGCCAAACGCG
+GACAAGGTCATGCTGCAGGATGTTCTGAGAAAAAAGCTCTAAGGCCGGCGCAGCGCAAAG
+GATAACGCGGCGCTGAAGGATCTACTGTCTCGAAAGTAGCAAGCCCGCAGGCCAAGCGCG
+ATGCACCACGCGCTCAAGGACGTTGTTGACCGAAAGCTCTGACCCCGGAGCGTCGCGAGA
+GACGTGGCCACGCTGCGTGAGGCGCTGGGAAAAAACTTCTGACGCCCGGCGCACGGAGAA
+GAAAACGAGGCATTGAAGGATGTCATCACAAAAAAGCTCTGAGGCCAGCCGAGAAGCGCG
+GATCACAAAATCCTGAAGGATATTGTCGAAAAAAAGCTATGAAGCCATCTGTGAGACGGG
+GATATGGAAGCGTTGAAGGTTGTCGTCAAGGGAAAGCCCTGAGCCCGCAAGCCAAACGCG
+GATATGGAAGCGTTGAAGGTTGTCGTCAAGGGAAAGCCCTGAGCCCGCAAGCCAAACGCG
+ATGCACCATGCGTTGAAGGACGTCGTTGACCGAAAGCTCTGACCCCGCAGCGTCGGATTG
+GATATGGAAGCGTTGAAGGTTGTCGTCAAGGGAAAGCCCTGAGCCCGCAAGCCAAACGCG
+AGTACCGACCTGCTGAAGGAAGCGCTCGCAAAAAAATGGTGAGGCCATCTCAGCGACGCG
+GATAAGGAAATGCTGCAGGATGTCATCCGAAAAAAGTTCTGAGGCCGCTGCAGAAGCGTG
+CAGACGGATATCCTGAAGGAAGCCCTTGGAAAAAAATGAAGCGGCCAGCCCAGCGCCGGG
+CAAAACCAGGCCATGAAGGAGTTGTTTGCAAAAAAGGGTTGGTGACAGCAGAAAAGA---
+GATATGGAAGCGTTGAAGGTTGTCGTCAAGGGAAAGCCCTGAGCCCGCAAGCCAAACGCG
+GATATGGAAGCGTTGAAGGTTGTCGTCAAGGGAAAGCCCTGAGCCCGCAAGCCAAACGCG
+GATATGGAAGCGTTGAAGGTTGTCGTCAAGGGAAAGCCCTGAGCCCGCAAGCCAAACGCG
+GATATGGAAGCGTTGAAGGTTGTCGTCAAGGGAAAGCCCTGAGCCCGCAAGCCAAACGCG
+GAAAATAAAGCGATGAAGGATTTAATAGAAAAAAAGCTCTAAGGCCGCAGGAAAGGCGTG
+GATATGGAAGCGTTGAAGGTTGTCGTCAAGGGAAAGCCCTGAGCCCGCAAGCCAAACGCG
+GATATGGAAGCGTTGAAGGTTGTCGTCAAGGGAAAGCCCTGAGCCCGCAAGCCAAACGCG
+GACGTGGCCACGCTGCGTGAGGCGCTGGGAAAAAACTTCTGACGCCCGGCGCACGGAGAA
+GAGCACGAGGTCTTGAAGGACATCATAGCAAAAAAGCTCTGAGGCCAACCGAGAAGCGGG
+CTCAAAGCGCAAATGCAGGAAGAGATCATAAAAAAGCTATAGCGCCTGCCCTTGAGCGCA
+GATATGGAAGCGTTGAAGGTTGTCGTCAAGGGAAAGCCCTGAGCCCGCAAGCCAAACGCG
+GATATGGAAGCGTTGAAGGTTGTCGTCAAGGGAAAGCCCTGAGCCCGCAAGCCAAACGCG
+GATATGGAAGCGTTGAAGGTTGTCGTCAAGGGAAAGCCCTGAGCCCGCAAGCCAAACGCG
+GATATGGAAGCGTTGAAGGTTGTCGTCAAGGGAAAGCCCTGAGCCCGCAAGCCAAACGCG
+GACGTGGCCACGCTGCGTGAGGCGCTGGGAAAAAACTTCTGACGCCCGGCGCACGGAGAA
+GAAAACCAGGCCCTGCGTGATCTGATTGAAAAAAAGCTTTAGGGCCGCCAGAGAAACGCG
+GATATGGAAGCGTTGAAGGTTGTCGTCAAGGGAAAGCCCTGAGCCCGCAAGCCAAACGCG
+GATATGGAAGCGTTGAAGGTTGTCGTCAAGGGAAAGCCCTGAGCCCGCAAGCCAAACGCG
+GATATGGAAGCGTTGAAGGTTGTCGTCAAGGGAAAGCCCTGAGCCCGCAAGCCAAACGCG
+GATATGGAAGCGTTGAAGGTTGTCGTCAAGGGAAAGCCCTGAGCCCGCAAGCCAAACGCG
+CAGACGGATATCCTGAAGGAAGCCCTTGGAAAAAAATGAAGCGGCCAGCCCAGCGCCGGG
+CAGACGGATATCCTGAAGGAAGCCCTTGGAAAAAAATGAAGCGGCCAGCCCAGCGCCGGG
+AAAGCCGAAATCATTCAGGAGGCCATGGCAAAAAAGTGGTGACGCCATCGCGTCGAAAGC
+AGTACCGACCTGCTGAAGGAAGCGCTCGCAAAAAAATGGTGAGGCCATCTCAGCGACGCG
+CAGACGGATATCCTGAAGGAAGCCCTTGGAAAAAAATGAAGCGGCCAGCCCAGCGCCGGG
+CTCAAAGCGCAAATGCAGGAAGAGATCATAAAAAAGCTATAGCGCCTGCCCTTGAGCGCA
+GATATGGAAGCGTTGAAGGTTGTCGTCAAGGGAAAGCCCTGAGCCCGCAAGCCAAACGCG
+GATAAGGAAATGCTGCAGGATGTCATCCGAAAAAAGTTCTGAGGCCGCTGCAGAAGCGCG
+CAGACGGATATCCTGAAGGAAGCCCTTGGAAAAAAATGAAGCGGCCAGCCCAGCGCCGGG
+GATATGGAAGCGTTGAAGGTTGTCGTCAAGGGAAAGCCCTGAGCCCGCAAGCCAAACGCG
+GACAACGCCGTGCTGAAGGAAATTTCCTCAAAAAAATGGTGACGCCCGCCGCCAGGCGGA
+AGCGCCGACCTGCTGAAGGAGGCGATGGCAAAAAAATGGTGAGGCCATCTCAACGCCGGG
+GAGAACCGGGCGCTGAAAGACGTTATCGAAAAAAAGCTTTAAAACCAGCCTTTAAGCGTG
+GAATGCCGGGCGCTGAAAGACGTCATCGAAAAAAAGCTTTAAACCCAGCGATAAAGCGTG
+GATATGGAAGCGTTGAAGGTTGTCGTCAAGGGAAAGCCCTGAGCCCGCAAGCCAAACGCG
+GACGTGGCCACGCTGCGTGAGGCGCTGGGAAAAAACTTCTGACGCCCGGCGCACGGAGAA
+CAGACGGATATCCTGAAGGAAGCCCTTGGAAAAAAATGAAGCGGCCAGCCCAGCGCCGGG
+GATATGGAAGCGTTGAAGGTTGTCGTCAAGGGAAAGCCCTGAGCCCGCAAGCCAAACGCG
+AAGGCAGAGATTGTCAAGGAAGCCCTTGAAAAAAAGTGGTAAAGCCGTCTTGTCGCCGCA
+GATATGGAAGCGTTGAAGGTTGTCGTCAAGGGAAAGCCCTGAGCCCGCAAGCCAAACGCG
+GATATGGAAGCGTTGAAGGTTGTCGTCAAGGGAAAGCCCTGAGCCCGCAAGCCAAACGCG
+GATATGGAAGCGTTGAAGGTTGTCGTCAAGGGAAAGCCCTGAGCCCGCAAGCCAAACGCG
+GAAAACCATGCATTGAAGGATGTCATCGCAAAAAAGCTGTAGACCCGGCGCATAAGCGCC
+GAGGCGGCGGCGCTGAAGGAGCTCCTGTCAAAAAAATGGTAGGGCCCGCCGCCAGGCGCG
+GAAAACCATGCATTGAAGGATGTCATCGCAAAAAAACTGTAGACCCGGCGCACAAGCGCC
+GACGTGGCCACGCTGCGTGAGGCGCTGGGAAAAAACTTCTGACGCCCGGCGCACGGAGAA
+GATATGGAAGCGTTGAAGGTTGTCGTCAAGGGAAAGCCCTGAGCCCGCAAGCCAAACGCG
+CAGACGGATATCCTGAAGGAAGCCCTTGGAAAAAAATGAAGCGGCCAGCCCAGCGCCGGG
+GACAAGGCCATGCTGCAGGATGTGCTGTCAAAAAAGCTCTGAAGCCTTCCCGGCGCCGTG
+GATATGGAAGCGTTGAAGGTTGTCGTCAAGGGAAAGCCCTGAGCCCGCAAGCCAAACGCG
+GATATGGAAGCGTTGAAGGTTGTCGTCAAGGGAAAGCCCTGAGCCCGCAAGCCAAACGCG
+GAGAACCGGGCGCTGAAAGACGTTATCGAAAAAAAGCTTTAAAACCAGCCTTTAAGCGTG
+CAGACGGATATCCTGAAGGAAGCCCTTGGAAAAAAATGAAGCGGCCAGCCCAGCGCCGGG
+CAGACGGATATCCTGAAGGAAGCCCTTGGAAAAAAATGAAGCGGCCAGCCCAGCGCCGGG
+GATATGGAAGCGTTGAAGGTTGTCGTCAAGGGAAAGCCCTGAGCCCGCAAGCCAAACGCG
+CTCGACAATGCTGCCTTGAAAGACCTTTTGGGAAAGAAGTGGTGACGCCCGCGGCCAAGC
+CAGACGGATATCCTGAAGGAAGCCCTTGGAAAAAAATGAAGCGGCCAGCCCAGCGCCGGG
+CAGACGGATATCCTGAAGGAAGCCCTTGGAAAAAAATGAAGCGGCCAGCCCAGCGCCGGG
+GATATGGAAGCGTTGAAGGTTGTCGTCAAGGGAAAGCCCTGAGCCCGCAAGCCAAACGCG
+CAGACGGATATCCTGAAGGAAGCCCTTGGAAAAAAATGAAGCGGCCAGCCCAGCGCCGGG
+GATATGGAAGCGTTGAAGGTTGTCGTCAAGGGAAAGCCCTGAGCCCGCAAGCCAAACGCG
+GATATGGAAGCGTTGAAGGTTGTCGTCAAGGGAAAGCCCTGAGCCCGCAAGCCAAACGCG
+GATATGGAAGCGTTGAAGGTTGTCGTCAAGGGAAAGCCCTGAGCCCGCAAGCCAAACGCG
+GATATGGAAGCGTTGAAGGTTGTCGTCAAGGGAAAGCCCTGAGCCCGCAAGCCAAACGCG
+CAGACGGATATCCTGAAGGAAGCCCTTGGAAAAAAATGAAGCGGCCAGCCCAGCGCCGGG
+GATATGGAAGCGTTGAAGGTTGTCGTCAAGGGAAAGCCCTGAGCCCGCAAGCCAAACGCG
+GACAAGGAGATGCTGCAGGAGGTACTGAAGCAAAAGTTCTGAGGCCGGCTCAGAAGCGCC
+GAGCACGAGGTCTTGAAGGACATCATAGCAAAAAAGCTCTGAGGCCAACCGAGAAGCGGG
+GAAAACCATGCATTGAAGGATGTCATCGCAAAAAAACTGTAGACCCGGCGCACAAGCGCC
+GATATGGAAGCGTTGAAGGTTGTCGTCAAGGGAAAGCCCTGAGCCCGCAAGCCAAACGCG
+CAGACGGATATCCTGAAGGAAGCCCTTGGAAAAAAATGAAGCGGCCAGCCCAGCGCCGGG
+GATATGGAAGCGTTGAAGGTTGTCGTCAAGGGAAAGCCCTGAGCCCGCAAGCCAAACGCG
+CAGACGGATATCCTGAAGGAAGCCCTTGGAAAAAAATGAAGCGGCCAGCCCAGCGCCGGG
+GATATGGAAGCGTTGAAGGTTGTCGTCAAGGGAAAGCCCTGAGCCCGCAAGCCAAACGCG
+GATATGGAAGCGTTGAAGGTTGTCGTCAAGGGAAAGCCCTGAGCCCGCAAGCCAAACGCG
+GATATGGAAGCGTTGAAGGTTGTCGTCAAGGGAAAGCCCTGAGCCCGCAAGCCAAACGCG
+GATATGGAAGCGTTGAAGGTTGTCGTCAAGGGAAAGCCCTGAGCCCGCAAGCCAAACGCG
+GATATGGAAGCGTTGAAGGTTGTCGTCAAGGGAAAGCCCTGAGCCCGCAAGCCAAACGCG
+CTCAAAGCGCAAATGCAGGAAGAGATCATAAAAAAGCTATAGCGCCTGCCCTTGAGCGCA
+GATATGGAAGCGTTGAAGGTCGTCGTCAAGGGAAAGCCCTGAGCCCGCAAGCCAAACGCG
+CTGGACAACGTCGCGCTGAAGGATCTCCTGGGAAAGAAGTGGTGACGCCCGCTGCCGAGC
+GACATCGAGTCGCTGAAAGTGGTCGCCCGGGGAAAAGGGTAAGCCCGACAGCACGGCGGG
+AAGGCAGAGATCATCCAGGAAGCGATGGCAAAAAAGTGGTGAGGCCATCTTGCCGACGTA
+GAGCACGAGGTCTTGAAGGACATCATAGCAAAAAAGCTCTGAGGCCAACCGAGAAGCGGG
+GATATCCAGATGCTCAAGGAGATCAATTCAAAAAAGTGGTAACGCCCGAGGCGAAGCGCA
+GATATGGAAGCGTTGAAGGTTGTCGTCAAGGGAAAGCCCTGAGCCCGCAAGCCAAACGCG
+GATATGGAAGCGTTGAAGGTTGTCGTCAAGGGAAAGCCCTGAGCCCGCAAGCCAAACGCG
+GATAAGGAAATGCTGCAGGATGTCATCCGAAAAAAGTTCTGAGGCCGCTGCAGAAGCGCG
+GATATGGAAGCGTTGAAGGTTGTCGTCAAGGGAAAGCCCTGAGCCCGCAAGCCAAACGCG
+GATATGGAAGCGTTGAAGGTTGTCGTCAAGGGAAAGCCCTGAGCCCGCAAGCCAAACGCG
+GATATGGAAGCGTTGAAGGTTGTCGTCAAGGGAAAGCCCTGAGCCCGCAAGCCAAACGCG
+GATAACCAAATACTCAAAGAGATTTTCGTAAAAAAGGGCTGGGCTCTGCCGCAAAAAGGG
+GAAAATAAAGCAATGAAGGACTTAATAGAAAAAAAGCTCTAAGGCCGCAGGAAAGACGTG
+CAGACGGATATCCTGAAGGAAGCCCTTGGAAAAAAATGAAGCGGCCAGCCCAGCGCCGGG
+GATATGGAAGCGTTGAAGGTTGTCGTCAAGGGAAAGCCCTGAGCCCGCAAGCCAAACGCG
+GACATCGAGTCGCTGAAAGTGGTCGCCCGGGGAAAAGGGTAAGCCCGACAGCACGGCGGG
+GATATGGAAGCGTTGAAGGTTGTCGTCAAGGGAAAGCCCTGAGCCCGCAAGCCAAACGCG
+CAGACGGATATCCTGAAGGAAGCCCTTGGAAAAAAATGAAGCGGCCAGCCCAGCGCCGGG
+GAAAACCAAGCCTTGAAGGATGTGATCGCAAAAAAGTTATAAGGCCAGCCGACAAACGCG
+CAGACGGATATCCTGAAGGAAGCCCTTGGAAAAAAATGAAGCGGCCAGCCCAGCGCCGGG
+CAGACGGATATCCTGAAGGAAGCCCTTGGAAAAAAATGAAGCGGCCAGCCCAGCGCCGGG
+GAGAATCGGGCATTAAAAGACGTCATCGAAAAAAAGCTTTAAAACCAGCGATAAAGCGTG
+GATATGGAAGCGTTGAAGGTTGTCGTCAAGGGAAAGCCCTGAGCCCGCAAGCCAAACGCG
+CAGACGGATATCCTGAAGGAAGCCCTTGGAAAAAAATGAAGCGGCCAGCCCAGCGCCGGG
+GAGAACGAGGCCTTGAAGGACGTCATTGCAAAAAAGCTTTGAGGCCAGCCGAGAAGCGCG
+CAGACGGATATCCTGAAGGAAGCCCTTGGAAAAAAATGAAGCGGCCAGCCCAGCGCCGGG
+GATATGGAAGCGTTGAAGGTTGTCGTCAAGGGAAAGCCCTGAGCCCGCAAGCCAAACGCG
+CAAAACCAGGCCATGAAGGAGTTGTTTGCAAAAAAGGGTTGGTGACAGCAGAAAAGA---
+CAGACGGATATCCTGAAGGAAGCCCTTGGAAAAAAATGAAGCGGCCAGCCCAGCGCCGGG
+GATATGGAAGCGTTGAAGGTTGTCGTCAAGGGAAAGCCCTGAGCCCGCAAGCCAAACGCG
+GATATGGAAGCGTTGAAGGTTGTCGTCAAGGGAAAGCCCTGAGCCCGCAAGCCAAACGCG
+GAATGCCGGGCGCTGAAAGACGTCATCGAAAAAAAGCTTTAAANCCAGCGATAAAGCGTG
+GACAAGCACATCCTGCAGGATGTGCTCGCAAAAAAGCTCTGACGCCTGCTCGGCGACGCG
+GACGTGGCCACGCTGCGTGAGGCGCTGGGAAAAAACTTCTGACGCCCGGCGCACGGAGAA
+CAGACGGATATCCTGAAGGAAGCCCTTGGAAAAAAATGAAGCGGCCAGCCCAGCGCCGGG
+CAGACGGATATCCTGAAGGAAGCCCTTGGAAAAAAATGAAGCGGCCAGCCCAGCGCCGGG
+GATAATTGGGCGCTTAAAGAGCTTCTCGCAAAAAACTTCTAGAGCCCAAGGTCAGGCGGG
+GATATGGAAGCGTTGAAGGTTGTCGTCAAGGGAAAGCCCTGAGCCCGCAAGCCAAACGCG
+GATATGGAAGCGTTGAAGGTCGTCGTCAAGGGAAAGCCCTGAGCCCGCAAGCCAAACGCG
+GATATGGAAGCGTTGAAGGTTGTCGTCAAGGGAAAGCCCTGAGCCCGCAAGCCAAACGCG
+GATATGGAAGCGTTGAAGGTCGTCGTCAAGGGAAAGCCCTGAGCCCGCAAGCCAAACGCG
+GATATGGAAGCGTTGAAGGTTGTCGTCAAGGGAAAGCCCTGAGCCCGCAAGCCAAACGCG
+GATATGGAAGCGTTGAAGGTTGTCGTCAAGGGAAAGCCCTGAGCCCGCAAGCCAAACGCG
+GATATGGAAGCGTTGAAGGTTGTCGTCAAGGGAAAGCCCTGAGCCCGCAAGCCAAACGCG
+GAATGCCGTGCGCTGAAAGACGTCATCGAGAAAAAGCTTTAAAACCAGCGATAAAGCGTG
+GATATGGAAGCGTTGAAGGTTGTCGTCAAGGGAAAGCCCTGAGCCCGCAAGCCAAACGCG
+CAGACGGATATCCTGAAGGAAGCCCTTGGAAAAAAATGAAGCGGCCAGCCCAGCGCCGGG
+GATATGGAAGCGTTGAAGGTTGTCGTCAAGGGAAAGCCCTGAGCCCGCAAGCCAAACGCG
+CAGACGGATATCCTGAAGGAAGCCCTTGGAAAAAAATGAAGCGGCCAGCCCAGCGCCGGG
+GATAAGGAAATGCTGCAGGATGTCATCCGAAAAAAGTTCTGAGGCCGCTGCAGAAGCGCG
+GATATGGAAGCGTTGAAGGTTGTCGTCAAGGGAAAGCCCTGAGCCCGCAAGCCAAACGCG
+GATATGGAAGCGTTGAAGGTTGTCGTCAAGGGAAAGCCCTGAGCCCGCAAGCCAAACGCG
+GATATGGAAGCGTTGAAGGTTGTCGTCAAGGGAAAGCCCTGAGCCCGCAAGCCAAACGCG
+GATATGGAAGCGTTGAAGGTTGTCGTCAAGGGAAAGCCCTGAGCCCGCAAGCCAAACGCG
+GATATGGAAGCGTTGAAGGTTGTCGTCAAGGGAAAGCCCTGAGCCCGCAAGCCAAACGCG
+GATATGGAAGCGTTGAAGGTTGTCGTCAAGGGAAAGCCCTGAGCCCGCAAGCCAAACGCG
+GATATGGAAGCGTTGAAGGTTGTCGTCAAGGGAAAGCCCTGAGCCCGCAAGCCAAACGCG
+GATATGGAAGCGTTGAAGGTTGTCGTCAAGGGAAAGCCCTGAGCCCGCAAGCCAAACGCG
+GATATGGAAGCGTTGAAGGTTGTCGTCAAGGGAAAGCCCTGAGCCCGCAAGCCAAACGCG
+CAGACGGATATCCTGAAGGAAGCCCTTGGAAAAAAATGAAGCGGCCAGCCCAGCGCCGGG
+CAGACGGATATCCTGAAGGAAGCCCTTGGAAAAAAATGAAGCGGCCAGCCCAGCGCCGGG
+GACGTGGCCACGCTGCGTGAGGCGCTGGGAAAAAACTTCTGACGCCCGGCGCACGGAGAA
+CAGACGGATATCCTGAAGGAAGCCCTTGGAAAAAAATGAAGCGGCCAGCCCAGCGCCGGG
+GATATGGAAGCGTTGAAGGTTGTCGTCAAGGGAAAGCCCTGAGCCCGCAAGCCAAACGCG
+GATATGGAAGCGTTGAAGGTTGTCGTCAAGGGAAAGCCCTGAGCCCGCAAGCCAAACGCG
+GATATGGAAGCGTTGAAGGTTGTCGTCAAGGGAAAGCCCTGAGCCCGCAAGCCAAACGCG
+GAAAATCGCGCGTTAAAAGACGTCATTGAAAAAAAGCTTTAAAACCAGCGATAAAGCGTG
+CAGACGGATATCCTGAAGGAAGCCCTTGGAAAAAAATGAAGCGGCCAGCCCAGCGCCGGG
+GATATGGAAGCGTTGAAGGTTGTCGTCAAGGGAAAGCCCTGAGCCCGCAAGCCAAACGCG
+GAGAACCGGGCGCTGAAAGACGTTATCGAAAAAAAGCTTTAAAACCAGCCTTTAAGCGTG
+GATATGGAAGCGTTGAAGGTTGTCGTCAAGGGAAAGCCCTGAGCCCGCAAGCCAAACGCG
+GATATGGAAGCGTTGAAGGTTGTCGTCAAGGGAAAGCCCTGAGCCCGCAAGCCAAACGCG
+GACGTGGCCACGCTGCGTGAGGCGCTGGGAAAAAACTTCTGACGCCCGGCGCACGGAGAA
+AAGGCCGATGTCATTCAGGAAGCCATGGCAAAAAAGTGGTAAAGCTGTCGCAACGTAAAG
+GACAAAGCGGCGTTGAAGGATCTTCTGGCAAAAAAGTTCTGACGCCCGCCGCGCAGCGGG
+GATATGGAAGCGTTGAAGGTTGTCGTCAAGGGAAAGCCCTGAGCCCGCAAGCCAAACGCG
+CAGACGGATATCCTGAAGGAAGCCCTTGGAAAAAAATGAAGCGGCCAGCCCAGCGCCGGG
+GACATCGAGTCGCTGAAAGTGGTCGCCCGGGGAAAAGGGTAAGCCCGACAGCACGGCGGG
+GACAAGGAGATGCTGCAGGAAGTTATCAAAAAAAAGTTCTGAGGCCGACTCAGAAGCGTC
+CAGACGGATATCCTGAAGGAAGCCCTTGGAAAAAAATGAAGCGGCCAGCCCAGCGCCGGG
+GATATGGAAGCGTTGAAGGTTGTCGTCAAGGGAAAGCCCTGAGCCCGCAAGCCAAACGCG
+GATATGGAAGCGTTGAAGGTTGTCGTCAAGGGAAAGCCCTGAGCCCGCAAGCCAAACGCG
+CAGACGGATATCCTGAAGGAAGCCCTTGGAAAAAAATGAAGCGGCCAGCCCAGCGCCGGG
+CAGACGGATATCCTGAAGGAAGCCCTTGGAAAAAAATGAAGCGGCCAGCCCAGCGCCGGG
+AAGTCGGACATCCTCAAGGAAGCCATTGAAAAAAAGTGGTAAAGCCGTCTCGTCGACGTG
+GATATGGAAGCGTTGAAGGTTGTCGTCAAGGGAAAGCCCTGAGCCCGCAAGCCAAACGCG
+GACGTGGCCACGCTGCGTGAGGCGCTGGGAAAAAACTTCTGACGCCCGGCGCACGGAGAA
+GAGAACAGGGCGCTGAAAGACGTTATCGAAAAAAGCTTTAAAACTAGCCTTTAAGCGTGA
+CTGGACAATGCAGCCCTGAAGGATCTTCTGGGAAAGAAGTGGTGACGCCCGCGGCCAAGC
+CAGACGGATATCCTGAAGGAAGCCCTTGGAAAAAAATGAAGCGGCCAGCCCAGCGCCGGG
+GATAACGCGGCGCTGAAGGATCTACTGTCTCGAAAGTAGCAAGCCCGCAGGCCAAGCGCG
+CAGACGGATATCCTGAAGGAAGCCCTTGGAAAAAAATGAAGCGGCCAGCCCAGCGCCGGG
+GATATGGAAGCGTTGAAGGTTGTCGTCAAGGGAAAGCCCTGAGCCCGCAAGCCAAACGCG
+GATATGGAAGCGTTGAAGGTTGTCGTCAAGGGAAAGCCCTGAGCCCGCAAGCCAAACGCG
+GATATGGAAGCGTTGAAGGTTGTCGTCAAGGGAAAGCCCTGAGCCCGCAAGCCAAACGCG
+GATATGGAAGCGTTGAAGGTTGTCGTCAAGGGAAAGCCCTGAGCCCGCAAGCCAAACGCG
+ACTGCCGAAGTACTTCGTGAGGCGATGGCAAAAAAATGGTGAGGCCATCTCAACGCCGGG
+AGTACCGACCTGCTGAAGGAAGCGCTCGCAAAAAAATGGTGAGGCCATCTCAGCGACGCG
+GATATGGAAGCGTTGAAGGTTGTCGTCAAGGGAAAGCCCTGAGCCCGCAAGCCAAACGCG
+GATATGGAAGCGTTGAAGGTTGTCGTCAAGGGAAAGCCCTGAGCCCGCAAGCCAAACGCG
+GATATGGAAGCGTTGAAGGTTGTCGTCAAGGGAAAGCCCTGAGCCCGCAAGCCAAACGCG
+GATATGGAAGCGTTGAAGGTTGTCGTCAAGGGAAAGCCCTGAGCCCGCAAGCCAAACGCG
+GATATGGAAGCGTTGAAGGTTGTCGTCAAGGGAAAGCCCTGAGCCCGCAAGCCAAACGCG
+GACGTGGCCACGCTGCGTGAGGCGCTGGGAAAAAACTTCTGACGCCCGGCGCACGGAGAA
+GATATGGAAGCGTTGAAGGTTGTCGTCAAGGGAAAGCCCTGAGCCCGCAAGCCAAACGCG
+GAAAACTATGCACTCAAGGATGTCATCGCAAAAAAGCTGTAGACCCGGCGCATAAGCGCC
+CAGACGGATATCCTGAAGGAAGCCCTTGGAAAAAAATGAAGCGGCCAGCCCAGCGCCGGG
+AAGGCAGAGATCATCACCGAGGCCATGGCAAAAAAGTGGTAACGCCATCTGCCCGCCGGG
+GACGTGGCCACGCTGCGTGAGGCGCTGGGAAAAAACTTCTGACGCCCGGCGCACGGAGAA
+GATATGGAAGCGTTGAAGGTTGTCGTCAAGGGAAAGCCCTGAGCCCGCAAGCCAAACGCG
+GATATGGAAGCGTTGAAGGTTGTCGTCAAGGGAAAGCCCTGAGCCCGCAAGCCAAACGCG
+CAGACGGATATCCTGAAGGAAGCCCTTGGAAAAAAATGAAGCGGCCAGCCCAGCGCCGGG
+GATATGGAAGCGTTGAAGGTTGTCGTCAAGGGAAAGCCCTGAGCCCGCAAGCCAAACGCG
+CTGGACAATGTGGCGCTGAAGGATCTCCTGGGAAAGAAGTGGTGACGCCCGCTGCCGAGC
+GATATGGAAGCGTTGAAGGTTGTCGTCAAGGGAAAGCCCTGAGCCCGCAAGCCAAACGCG
+CAGACGGATATCCTGAAGGAAGCCCTTGGAAAAAAATGAAGCGGCCAGCCCAGCGCCGGG
+GATATGGAAGCGTTGAAGGTTGTCGTCAAGGGAAAGCCCTGAGCCCGCAAGCCAAACGCG
+AAGGCCGATGTCATTCAGGAAGCCATGGCAAAAAAGTGGTAAAGCTGTCGCAACGTAAAG
+GATATGGAAGCGTTGAAGGTTGTCGTCAAGGGAAAGCCCTGAGCCCGCAAGCCAAACGCG
+GAAAACCATGCATTGAAGGATGTCATCGCAAAAAAGCTGTAGACCCGGCGCATAAGCGCC
+GATATGGAAGCGTTGAAGGTTGTCGTCAAGGGAAAGCCCTGAGCCCGCAAGCCAAACGCG
+GATATGGAAGCGTTGAAGGTTGTCGTCAAGGGAAAGCCCTGAGCCCGCAAGCCAAACGCG
+GATATGGAAGCGTTGAAGGTTGTCGTCAAGGGAAAGCCCTGAGCCCGCAAGCCAAACGCG
+GATATGGAAGCGTTGAAGGTTGTCGTCAAGGGAAAGCCCTGAGCCCGCAAGCCAAACGCG
+GACGTGGCCACGCTGCGTGAGGCGCTGGGAAAAAACTTCTGACGCCCGGCGCACGGAGAA
+GATAATCAACTTCTTAAAGATCTCTTCACAAAAAAAGGCTGGGCCCTGCCACCCAAAGAC
+GATATGGAAGCGTTGAAGGTTGTCGTCAAGGGAAAGCCCTGAGCCCGCAAGCCAAACGCG
+GAAAACCATGCATTGAAGGATGTCATCGCAAAAAAGCTGTAGACCCGGCGCATAAGCGCC
+GATATGGAAGCGTTGAAGGTTGTCGTCAAGGGAAAGCCCTGAGCCCGCAAGCCAAACGCG
+GATATGGAAGCGTTGAAGGTTGTCGTCAAGGGAAAGCCCTGAGCCCGCAAGCCAAACGCG
+GAGAATTCGGCGATCAAGGATGTTCTGAACCGAAAATCCTGACGCCGTCGGCCAGGCGCG
+GATATGGAAGCGTTGAAGGTTGTCGTCAAGGGAAAGCCCTGAGCCCGCAAGCCAAACGCG
+GATATGGAAGCGTTGAAGGTCGTCGTCAAGGGAAAGCCCTGAGCCCGCAAGCCAAACGCG
+GAAAACCATGCATTGAAGGATGTCATCGCAAAAAAACTGTAGACCCGGCGCACAAGCGCC
+GATATGGAAGCGTTGAAGGTTGTCGTCAAGGGAAAGCCCTGAGCCCGCAAGCCAAACGCG
+GACGTGGCCACGCTGCGTGAGGCGCTGGGAAAAAACTTCTGACGCCCGGCGCACGGAGAA
+GATATGGAAGCGTTGAAGGTTGTCGTCAAGGGAAAGCCCTGAGCCCGCAAGCCAAACGCG
+AAGGCCGAGCTCCGTCAGGAAGCCCTGGAGGGAAAGTTGTAAGGCCATCTCAACGCCGGG
+GATATGGAAGCGTTGAAGGTTGTCGTCAAGGGAAAGCCCTGAGCCCGCAAGCCAAACGCG
+GATATGGAAGCGTTGAAGGTCGTCGTCAAGGGAAAGCCCTGAGCCCGCAAGCCAAACGCG
+GATATGGAAGCGTTGAAGGTTGTCGTCAAGGGAAAGCCCTGAGCCCGCAAGCCAAACGCG
+GATATGGAAGCGTTGAAGGTTGTCGTCAAGGGAAAGCCCTGAGCCCGCAAGCCAAACGCG
+GACAACGCCATCCTGAAGGATGTGGCTTCAAAAAAATGGTGACGCCCGATGCGAGGCGCA
+CAGAACGATCTGCTGAAGGAAGCCCTTGGAAAAAAGTGGTGAGGCCGTCTCAAAGACGCG
+GATATGGAAGCGTTGAAGGTTGTCGTCAAGGGAAAGCCCTGAGCCCGCAAGCCAAACGCG
+GACAAGGCCATGCTGCAGGATGTGCTGTCAAAAAAGCTCTGAAGCCTTCCCGGCGCCGTG
+GATATGGAAGCGTTGAAGGTTGTCGTCAAGGGAAAGCCCTGAGCCCGCAAGCCAAACGCG
+AAATCAGATATCCTACAGGATGCTATGTCAAAAAAGTGGTAGCGCCGCTTGGGCGCAAAG
+GATATGGAAGCGTTGAAGGTTGTCGTCAAGGGAAAGCCCTGAGCCCGCAAGCCAAACGCG
+CTGGACAACGTCGCGCTGAAGGATCTCCTGGGAAAGAAGTGGTGACGCCCGCTGCCGAGC
+GATATGGAAGCGTTGAAGGTTGTCGTCAAGGGAAAGCCCTGAGCCCGCAAGCCAAACGCG
+CAGACGGATATCCTGAAGGAAGCCCTTGGAAAAAAATGAAGCGGCCAGCCCAGCGCCGGG
+GAAAACCATGCATTGAAGGATGTCATCGCAAAAAAGCTGTAGACCCGGCGCATAAGCGCC
+GATATGGAAGCGTTGAAGGTTGTCGTCAAGGGAAAGCCCTGAGCCCGCAAGCCAAACGCG
+CAGACGGATATCCTGAAGGAAGCCCTTGGAAAAAAATGAAGCGGCCAGCCCAGCGCCGGG
+GATATGGAAGCGTTGAAGGTTGTCGTCAAGGGAAAGCCCTGAGCCCGCAAGCCAAACGCG
+CTGGACAACGTCGCGCTGAAGGATCTCCTGGGAAAGAAGTGGTGACGCCCGCTGCCGAGC
+CAGACGGATATCCTGAAGGAAGCCCTTGGAAAAAAATGAAGCGGCCAGCCCAGCGCCGGG
+GATAATCAACTTCTTAAAGATCTCTTCACAAAAAAAGGCTGGGCCCTGCCACCCAAAGAC
+CAGACGGATATCCTGAAGGAAGCCCTTGGAAAAAAATGAAGCGGCCAGCCCAGCGCCGGG
+GATATGGAAGCGTTGAAGGTTGTCGTCAAGGGAAAGCCCTGAGCCCGCAAGCCAAACGCG
+GACAAGGTCATGCTGCAGGATGTTCTGAGAAAAAAGCTCTAAGGCCGGCGCAGCGCAAAG
+GATATGGAAGCGTTGAAGGTTGTCGTCAAGGGAAAGCCCTGAGCCCGCAAGCCAAACGCG
+GATATGGAAGCGTTGAAGGTTGTCGTCAAGGGAAAGCCCTGAGCCCGCAAGCCAAACGCG
+GAGAACCGGGCGCTGAAAGACGTTATCGAAAAAAAGCTTTAAAACCAGCCTTTAAGCGTG
+GATATGGAAGCGTTGAAGGTTGTCGTCAAGGGAAAGCCCTGAGCCCGCAAGCCAAACGCG
+GATATGGAAGCGTTGAAGGTTGTCGTCAAGGGAAAGCCCTGAGCCCGCAAGCCAAACGCG
+GATAATCAACTTCTTAAAGATCTCTTCACAAAAAAAGGCTGGGCCCTGCCACCCAAAGAC
+CAGACGGATATCCTGAAGGAAGCCCTTGGAAAAAAATGAAGCGGCCAGCCCAGCGCCGGG
+GATAAGGAGGCGCTTCAGGTGGCTCTGGGGCGAAAGTACTGACGACAGGCCAGAAGCGGG
+GATATGGAAGCGTTGAAGGTTGTCGTCAAGGGAAAGCCCTGAGCCCGCAAGCCAAACGCG
+GATATGGAAGCGTTGAAGGTTGTCGTCAAGGGAAAGCCCTGAGCCCGCAAGCCAAACGCG
+GATAACGCCGCGCTGAAGGACCTGCTGTCTCGAAAGTAGCAAGCCCGCAGGCCAAGCGCG
+CTCGACAATGCTGCCTTGAAAGACCTTTTGGGAAAGAAGTGGTGACGCCCGCGGCCAAGC
+GATATGGAAGCGTTGAAGGTTGTCGTCAAGGGAAAGCCCTGAGCCCGCAAGCCAAACGCG
+GATCACAAAATCCTGAAGGATATTGTTGAAAAAAAGCTGTGAAGCCAACTGTGCGTCGGG
+GATATGGAAGCGTTGAAGGTTGTCGTCAAGGGAAAGCCCTGAGCCCGCAAGCCAAACGCG
+CAGACGGATATCCTGAAGGAAGCCCTTGGAAAAAAATGAAGCGGCCAGCCCAGCGCCGGG
+GAAAACGAGGCATTGAAGGATGTCATCACAAAAAAGCTCTGAGGCCAGCCGAGAAGCGCG
+GATATGGAAGCGTTGAAGGTTGTCGTCAAGGGAAAGCCCTGAGCCCGCAAGCCAAACGCG
+CAGACGGATATCCTGAAGGAAGCCCTTGGAAAAAAATGAAGCGGCCAGCCCAGCGCCGGG
+GACGTGGCCACGCTGCGTGAGGCGCTGGGAAAAAACTTCTGACGCCCGGCGCACGGAGAA
+GATAAGGAGGCACTTCAGGTGGCTCTGGGGCGAAAGTACTGACGACAGACCAGAAGCGGG
+GACATGGAAGCGCTGAAGGTGGTGGTCAAGGGAAAGCCCTGAGCCCACAAGCCAAGCGCG
+AGTACCGACCTGCTGAAGGAAGCGCTCGCAAAAAAATGGTGAGGCCATCTCAGCGACGCG
+GAACATAAGATCCTCAAAGATCTCGTCGAAAAAAAGCTCTGAAGCCAGCGGTCAGGCGTG
+GAAAACCATGCATTGAAGGATGTCATCGCAAAAAAGCTGTAGACCCGGCGCATAAGCGCC
+GACAAAGCGGCGTTGAAGGATCTTCTGGCAAAAAAGTTCTGACGCCCGCCGCGCAGCGGG
+GATATGGAAGCGTTGAAGGTCGTCGTCAAGGGAAAGCCCTGAGCCCGCAAGCCAAACGCG
+GATCATGAAATTCTTAAGGATGTTGTTTCAAAAAAACTTTAACGGTGCCTGAGAAGCGTG
+GATATGGAAGCGTTGAAGGTTGTCGTCAAGGGAAAGCCCTGAGCCCGCAAGCCAAACGCG
+AGTACCGACCTGCTGAAGGAAGCGCTCGCAAAAAAATGGTGAGGCCATCTCAGCGACGCG
+CAGACGGATATCCTGAAGGAAGCCCTTGGAAAAAAATGAAGCGGCCAGCCCAGCGCCGGG
+GACGTGGCCACGCTGCGTGAGGCGCTGGGAAAAAACTTCTGACGCCCGGCGCACGGAGAA
+GATATGGAAGCGTTGAAGGTTGTCGTCAAGGGAAAGCCCTGAGCCCGCAAGCCAAACGCG
+GATATGGAAGCGTTGAAGGTTGTCGTCAAGGGAAAGCCCTGAGCCCGCAAGCCAAACGCG
+GATATGGAAGCGTTGAAGGTTGTCGTCAAGGGAAAGCCCTGAGCCCGCAAGCCAAACGCG
+GATATGGAAGCGTTGAAGGTTGTCGTCAAGGGAAAGCCCTGAGCCCGCAAGCCAAACGCG
+GAGAACACGGCCCTGAAGGACGTGATCACAAAAAAGCTCTGAGCCCGGACGAGAAGCGCC
+GAAAACCGTGCTTTGAAGGATCTGATCGAAAAAAAGCTTTAAGGCCGACTGGGAAACGCG
+ATGCACCATGCGTTGAAGGACGTCGTTGACCGAAAGCTCTGACCCCGCAGCGTCGGATTG
+ACTGCCGAAGTACTTCGTGAGGCGATGGCAAAAAAATGGTGAGGCCATCTCAACGCCGGG
+AAGGCTGAGATCGTCAAGGAAGCCCTCGAAAAAAAGTGGTGAAGCCATCTCGTCGGCGCG
+GATATGGAAGCGTTGAAGGTTGTCGTCAAGGGAAAGCCCTGAGCCCGCAAGCCAAACGCG
+GATAATCAACTTCTTAAAGATCTCTTCACAAAAAAAGGCTGGGCCCTGCCACCCAAAGAC
+GATATGGAAGCGTTGAAGGTTGTCGTCAAGGGAAAGCCCTGAGCCCGCAAGCCAAACGCG
+GACAAGCACATCCTGCAGGACGTGCTCGCAAAAAAGCTCTGACGCCTGCTCGGCGACGCG
+CAGAACGATCTGCTGAAGGAAGCCCTTGGAAAAAAGTGGTGAGGCCGTCTCAAAGACGCG
+CAGACGGATATCCTGAAGGAAGCCCTTGGAAAAAAATGAAGCGGCCAGCCCAGCGCCGGG
+GATATGGAAGCGTTGAAGGTTGTCGTCAAGGGAAAGCCCTGAGCCCGCAAGCCAAACGCG
+CAGGCCGATTTGCTGAAGGAGGCTCTCGGAAAAAAATGACGCGGCCATCTCAACGCCGCG
+AGTACCGACCTGCTGAAGGAAGCGCTCGCAAAAAAATGGTGAGGCCATCTCAGCGACGCG
+GACAATGTCCTGCTGAAGGAAGTCCTCGGAAAAAAATGGTGACGCCCACGGCGTTGCGGG
+GACGTGGCCACGCTGCGTGAGGCGCTGGGAAAAAACTTCTGACGCCCGGCGCACGGAGAA
+GATATGGAAGCGTTGAAGGTTGTCGTCAAGGGAAAGCCCTGAGCCCGCAAGCCAAACGCG
+GATATGGAAGCGTTGAAGGTTGTCGTCAAGGGAAAGCCCTGAGCCCGCAAGCCAAACGCG
+AAGGCAGAGATCGTCGCGGAGGCACTCGCAAAAAAGGACTGAGGCCATCTCGCCGGCGCG
+GAGCACGAGGTCTTGAAGGACATCATAGCAAAAAAGCTCTGAGGCCAACCGAGAAGCGGG
+GATATGGAAGCGTTGAAGGTTGTCGTCAAGGGAAAGCCCTGAGCCCGCAAGCCAAACGCG
+CAGACGGATATCCTGAAGGAAGCCCTTGGAAAAAAATGAAGCGGCCAGCCCAGCGCCGGG
+CAGACGGATATCCTGAAGGAAGCCCTTGGAAAAAAATGAAGCGGCCAGCCCAGCGCCGGG
+GATATGGAAGCGTTGAAGGTTGTCGTCAAGGGAAAGCCCTGAGCCCGCAAGCCAAACGCG
+CAGACGGATATCCTGAAGGAAGCCCTTGGAAAAAAATGAAGCGGCCAGCCCAGCGCCGGG
+AAAGCCGAGATTATTCAGGAAGCCATGATAAAAAAGTGGTAAAGCCTGCTCAGCGTCGAC
diff -r 8d676bbd1f2d -r 5149eb3a89c2 weblogolib/.__init__.py.kate-swp
Binary file weblogolib/.__init__.py.kate-swp has changed
diff -r 8d676bbd1f2d -r 5149eb3a89c2 weblogolib/__init__.py
--- a/weblogolib/__init__.py	Mon Jan 16 07:03:36 2012 -0500
+++ b/weblogolib/__init__.py	Fri Jan 20 09:03:40 2012 -0500
@@ -132,6 +132,7 @@
 altype="codonsT"
 offset=0
 isreversed=False
+show_warnings=False
 col=[]
 
 
@@ -169,7 +170,7 @@
 
 description  = "Create sequence logos from biological sequence alignments." 
 
-__version__ = "1.0"
+__version__ = "1.1"
 
 # These keywords are subsituted by subversion.
 # The date and revision will only  tell the truth after a branch or tag,
@@ -312,9 +313,9 @@
 # Check that can get 80 characters in journal page @small
 # 40 chacaters in a journal column
 std_sizes = {
-    "small" : LogoSize( stack_width = 10, stack_height = 10*1*5), 
-    "medium" : LogoSize( stack_width = 10*2, stack_height = 10*2*5),
-    "large"  : LogoSize( stack_width = 10*3, stack_height = 10*3*5),    
+    "small" : LogoSize( stack_width = 16.2, stack_height = 10*1*5), 
+    "medium" : LogoSize( stack_width = 16.2*2, stack_height = 10*2*5),
+    "large"  : LogoSize( stack_width = 16.2*3, stack_height = 10*3*5),    
 }
             
             
@@ -439,6 +440,7 @@
         self.yaxis_scale = None
 
         self.show_xaxis = True
+        self.strict=False
         self.xaxis_label = ""
         self.xaxis_tic_interval =1
         self.rotate_numbers = False
@@ -798,7 +800,7 @@
         "errorbar_width_fraction",
         "errorbar_gray",    "small_fontsize",       "fontsize",
         "title_fontsize",   "number_fontsize",      "text_font",
-        "logo_font",        "title_font",          
+        "logo_font",        "title_font",           "strict",
         "logo_label",       "yaxis_scale",          "end_type",
         "debug",            "show_title",           "show_xaxis",
         "show_xaxis_label", "show_yaxis",           "show_yaxis_label",
@@ -930,6 +932,8 @@
 
     # Create and output logo
     template = resource_string( __name__, 'template.eps', __file__)
+    
+
     logo = Template(template).substitute(subsitutions)
     print >>fout, logo
  
@@ -1248,6 +1252,14 @@
               if len(str(seqs[i][(counter):(counter+3)]))==3 and len(seqs[i][(counter):(counter+3)].strip("GATUC"))==0  :
 		if(str(seqs[i][(counter):(counter+3)]) in alphabet):
                   x[counter/3][ (alphabet.index(str(seqs[i][(counter):(counter+3)]))) ]+=1
+              elif show_warnings:
+		if len(seqs[i][(counter):(counter+3)].strip("GATUC"))==1 or len(seqs[i][(counter):(counter+3)].strip("GATUC"))==2 :
+		  print >>sys.stderr, 'Warning:Incomplete or non GATUC codon detected:', seqs[i][(counter):(counter+3)]
+		  print >>sys.stderr, 'Position:',counter
+		  print >>sys.stderr, 'Sequence:',i
+		  print >>sys.stderr, 'This will be treated as ---'
+
+
 	    counter=counter+3
 	  counts=asarray(x)
         else:
@@ -1369,12 +1381,19 @@
       if not line:
         break
       line = line.split()
-      priordict[line[0]]=line[1]
-    return priordict    
+      
+      if(altype=="codonsT"):
+	priordict[line[0].upper().replace("U", "T")]=(float(line[1])/1000)*64
+      else:
+	priordict[line[0].upper().replace("T", "U")]=(float(line[1])/1000)*64
+
+    return priordict
 
 def _build_logodata(options) :
     global offset
     offset=options.frame
+    global show_warnings
+    show_warnings = options.strict
     options.alphabet = None
     options.ignore_lower_case = False
     #options.default_color = Color.by_name("black")
@@ -1384,7 +1403,7 @@
     seqs = read_seq_data(options.fin, 
         options.input_parser.read,
         alphabet=options.alphabet,
-        ignore_lower_case = options.ignore_lower_case)      
+        ignore_lower_case = options.ignore_lower_case)    
     if(options.priorfile!=None):
       if(altype=="CodonsT"):
         options.composition= str(read_priors(options.priorfile,codon_alphabetT))
@@ -1408,6 +1427,7 @@
         "logo_title",
         "yaxis_label", 
         "show_xaxis",
+        "strict",
         "show_yaxis",        
         "xaxis_label", 
         "show_ends",
@@ -1644,7 +1664,13 @@
         type="int",
         help="Upper bound of sequence to display",
         metavar="INDEX")
-
+        
+    data_grp.add_option( "-G", "--strict",
+        dest="strict",
+        action="store",
+        type="boolean",
+        help="Issue warnings if partial codons are encountered. Default: %default",default = defaults.strict,
+        metavar="True/False")
     # ========================== FORMAT OPTIONS ==========================
 
     format_grp.add_option( "-s", "--size",
diff -r 8d676bbd1f2d -r 5149eb3a89c2 weblogolib/template.eps
--- a/weblogolib/template.eps	Mon Jan 16 07:03:36 2012 -0500
+++ b/weblogolib/template.eps	Fri Jan 20 09:03:40 2012 -0500
@@ -484,7 +484,7 @@
        % if char_height is negative or very small replace with zero 
        % BUG FIX: This used to be '0.0 gt' but it seems that DrawHeight
        % has a finite, non-zero minimum, which results in a rangecheck error
-       0.001 gt {}{pop 0.0} ifelse 
+       0.01 gt {}{pop 0.0} ifelse 
     def 
 
     char_height 0.0 gt {