annotate report_clonality/naive_gene_freq.htm @ 26:28fbbdfd7a87 draft

Uploaded
author davidvanzessen
date Mon, 13 Feb 2017 09:08:46 -0500
parents 5d11c9139a55
children b539aeb75980
Ignore whitespace changes - Everywhere: Within whitespace: At end of lines:
rev   line source
18
5d11c9139a55 Uploaded
davidvanzessen
parents:
diff changeset
1 <html>
5d11c9139a55 Uploaded
davidvanzessen
parents:
diff changeset
2
5d11c9139a55 Uploaded
davidvanzessen
parents:
diff changeset
3 <head>
5d11c9139a55 Uploaded
davidvanzessen
parents:
diff changeset
4 <meta http-equiv=Content-Type content="text/html; charset=windows-1252">
5d11c9139a55 Uploaded
davidvanzessen
parents:
diff changeset
5 <meta name=Generator content="Microsoft Word 14 (filtered)">
5d11c9139a55 Uploaded
davidvanzessen
parents:
diff changeset
6 <style>
5d11c9139a55 Uploaded
davidvanzessen
parents:
diff changeset
7 <!--
5d11c9139a55 Uploaded
davidvanzessen
parents:
diff changeset
8 /* Font Definitions */
5d11c9139a55 Uploaded
davidvanzessen
parents:
diff changeset
9 @font-face
5d11c9139a55 Uploaded
davidvanzessen
parents:
diff changeset
10 {font-family:Calibri;
5d11c9139a55 Uploaded
davidvanzessen
parents:
diff changeset
11 panose-1:2 15 5 2 2 2 4 3 2 4;}
5d11c9139a55 Uploaded
davidvanzessen
parents:
diff changeset
12 /* Style Definitions */
5d11c9139a55 Uploaded
davidvanzessen
parents:
diff changeset
13 p.MsoNormal, li.MsoNormal, div.MsoNormal
5d11c9139a55 Uploaded
davidvanzessen
parents:
diff changeset
14 {margin-top:0in;
5d11c9139a55 Uploaded
davidvanzessen
parents:
diff changeset
15 margin-right:0in;
5d11c9139a55 Uploaded
davidvanzessen
parents:
diff changeset
16 margin-bottom:10.0pt;
5d11c9139a55 Uploaded
davidvanzessen
parents:
diff changeset
17 margin-left:0in;
5d11c9139a55 Uploaded
davidvanzessen
parents:
diff changeset
18 line-height:115%;
5d11c9139a55 Uploaded
davidvanzessen
parents:
diff changeset
19 font-size:11.0pt;
5d11c9139a55 Uploaded
davidvanzessen
parents:
diff changeset
20 font-family:"Calibri","sans-serif";}
5d11c9139a55 Uploaded
davidvanzessen
parents:
diff changeset
21 p.MsoNoSpacing, li.MsoNoSpacing, div.MsoNoSpacing
5d11c9139a55 Uploaded
davidvanzessen
parents:
diff changeset
22 {margin:0in;
5d11c9139a55 Uploaded
davidvanzessen
parents:
diff changeset
23 margin-bottom:.0001pt;
5d11c9139a55 Uploaded
davidvanzessen
parents:
diff changeset
24 font-size:11.0pt;
5d11c9139a55 Uploaded
davidvanzessen
parents:
diff changeset
25 font-family:"Calibri","sans-serif";}
5d11c9139a55 Uploaded
davidvanzessen
parents:
diff changeset
26 .MsoChpDefault
5d11c9139a55 Uploaded
davidvanzessen
parents:
diff changeset
27 {font-family:"Calibri","sans-serif";}
5d11c9139a55 Uploaded
davidvanzessen
parents:
diff changeset
28 .MsoPapDefault
5d11c9139a55 Uploaded
davidvanzessen
parents:
diff changeset
29 {margin-bottom:10.0pt;
5d11c9139a55 Uploaded
davidvanzessen
parents:
diff changeset
30 line-height:115%;}
5d11c9139a55 Uploaded
davidvanzessen
parents:
diff changeset
31 @page WordSection1
5d11c9139a55 Uploaded
davidvanzessen
parents:
diff changeset
32 {size:8.5in 11.0in;
5d11c9139a55 Uploaded
davidvanzessen
parents:
diff changeset
33 margin:1.0in 1.0in 1.0in 1.0in;}
5d11c9139a55 Uploaded
davidvanzessen
parents:
diff changeset
34 div.WordSection1
5d11c9139a55 Uploaded
davidvanzessen
parents:
diff changeset
35 {page:WordSection1;}
5d11c9139a55 Uploaded
davidvanzessen
parents:
diff changeset
36 -->
5d11c9139a55 Uploaded
davidvanzessen
parents:
diff changeset
37 </style>
5d11c9139a55 Uploaded
davidvanzessen
parents:
diff changeset
38
5d11c9139a55 Uploaded
davidvanzessen
parents:
diff changeset
39 </head>
5d11c9139a55 Uploaded
davidvanzessen
parents:
diff changeset
40
5d11c9139a55 Uploaded
davidvanzessen
parents:
diff changeset
41 <body lang=EN-US>
5d11c9139a55 Uploaded
davidvanzessen
parents:
diff changeset
42
5d11c9139a55 Uploaded
davidvanzessen
parents:
diff changeset
43 <div class=WordSection1>
5d11c9139a55 Uploaded
davidvanzessen
parents:
diff changeset
44
5d11c9139a55 Uploaded
davidvanzessen
parents:
diff changeset
45 <p class=MsoNormal style='margin-bottom:0in;margin-bottom:.0001pt;text-align:
5d11c9139a55 Uploaded
davidvanzessen
parents:
diff changeset
46 justify;line-height:normal'><span lang=EN-GB style='font-size:12.0pt;
5d11c9139a55 Uploaded
davidvanzessen
parents:
diff changeset
47 font-family:"Times New Roman","serif"'>This tab gives information on the
5d11c9139a55 Uploaded
davidvanzessen
parents:
diff changeset
48 frequency of V, D and J gene usage. </span></p>
5d11c9139a55 Uploaded
davidvanzessen
parents:
diff changeset
49
5d11c9139a55 Uploaded
davidvanzessen
parents:
diff changeset
50 <p class=MsoNoSpacingCxSpMiddle style='text-align:justify'><b><span lang=EN-GB
5d11c9139a55 Uploaded
davidvanzessen
parents:
diff changeset
51 style='font-size:12.0pt;font-family:"Times New Roman","serif"'>Graphs</span></b></p>
5d11c9139a55 Uploaded
davidvanzessen
parents:
diff changeset
52
5d11c9139a55 Uploaded
davidvanzessen
parents:
diff changeset
53 <p class=MsoNormalCxSpFirst style='margin-bottom:0in;margin-bottom:.0001pt;
5d11c9139a55 Uploaded
davidvanzessen
parents:
diff changeset
54 text-align:justify;line-height:normal'><u><span lang=EN-GB style='font-size:
5d11c9139a55 Uploaded
davidvanzessen
parents:
diff changeset
55 12.0pt;font-family:"Times New Roman","serif"'>Distribution of V gene families</span></u></p>
5d11c9139a55 Uploaded
davidvanzessen
parents:
diff changeset
56
5d11c9139a55 Uploaded
davidvanzessen
parents:
diff changeset
57 <p class=MsoNormalCxSpMiddle style='margin-bottom:0in;margin-bottom:.0001pt;
5d11c9139a55 Uploaded
davidvanzessen
parents:
diff changeset
58 text-align:justify;line-height:normal'><a name="OLE_LINK123"></a><a
5d11c9139a55 Uploaded
davidvanzessen
parents:
diff changeset
59 name="OLE_LINK122"></a><a name="OLE_LINK121"><span lang=EN-GB style='font-size:
5d11c9139a55 Uploaded
davidvanzessen
parents:
diff changeset
60 12.0pt;font-family:"Times New Roman","serif"'>Bar graph showing the frequency
5d11c9139a55 Uploaded
davidvanzessen
parents:
diff changeset
61 of V gene family usage in all uploaded donors. </span></a></p>
5d11c9139a55 Uploaded
davidvanzessen
parents:
diff changeset
62
5d11c9139a55 Uploaded
davidvanzessen
parents:
diff changeset
63 <p class=MsoNormalCxSpMiddle style='margin-bottom:0in;margin-bottom:.0001pt;
5d11c9139a55 Uploaded
davidvanzessen
parents:
diff changeset
64 text-align:justify;line-height:normal'><u><span lang=EN-GB style='font-size:
5d11c9139a55 Uploaded
davidvanzessen
parents:
diff changeset
65 12.0pt;font-family:"Times New Roman","serif"'>Relative frequency of V gene
5d11c9139a55 Uploaded
davidvanzessen
parents:
diff changeset
66 usage</span></u></p>
5d11c9139a55 Uploaded
davidvanzessen
parents:
diff changeset
67
5d11c9139a55 Uploaded
davidvanzessen
parents:
diff changeset
68 <p class=MsoNormalCxSpLast style='margin-bottom:0in;margin-bottom:.0001pt;
5d11c9139a55 Uploaded
davidvanzessen
parents:
diff changeset
69 text-align:justify;line-height:normal'><a name="OLE_LINK126"></a><a
5d11c9139a55 Uploaded
davidvanzessen
parents:
diff changeset
70 name="OLE_LINK125"></a><a name="OLE_LINK124"><span lang=EN-GB style='font-size:
5d11c9139a55 Uploaded
davidvanzessen
parents:
diff changeset
71 12.0pt;font-family:"Times New Roman","serif"'>Bar graph showing the frequency
5d11c9139a55 Uploaded
davidvanzessen
parents:
diff changeset
72 of V genes in all uploaded donors. The order of the V genes on the x-axis can
5d11c9139a55 Uploaded
davidvanzessen
parents:
diff changeset
73 be altered by altering the “<span style='color:black;background:white'>Order of
5d11c9139a55 Uploaded
davidvanzessen
parents:
diff changeset
74 V(D)J genes in graphs” filter on the main page of the Immune repertoire
5d11c9139a55 Uploaded
davidvanzessen
parents:
diff changeset
75 pipeline.</span></span></a></p>
5d11c9139a55 Uploaded
davidvanzessen
parents:
diff changeset
76
5d11c9139a55 Uploaded
davidvanzessen
parents:
diff changeset
77 <p class=MsoNoSpacingCxSpLast style='text-align:justify'><a name="OLE_LINK129"></a><a
5d11c9139a55 Uploaded
davidvanzessen
parents:
diff changeset
78 name="OLE_LINK128"></a><a name="OLE_LINK127"><u><span lang=EN-GB
5d11c9139a55 Uploaded
davidvanzessen
parents:
diff changeset
79 style='font-size:12.0pt;font-family:"Times New Roman","serif"'>Relative
5d11c9139a55 Uploaded
davidvanzessen
parents:
diff changeset
80 frequency of D gene usage</span></u></a></p>
5d11c9139a55 Uploaded
davidvanzessen
parents:
diff changeset
81
5d11c9139a55 Uploaded
davidvanzessen
parents:
diff changeset
82 <p class=MsoNormalCxSpFirst style='margin-bottom:0in;margin-bottom:.0001pt;
5d11c9139a55 Uploaded
davidvanzessen
parents:
diff changeset
83 text-align:justify;line-height:normal'><span lang=EN-GB style='font-size:12.0pt;
5d11c9139a55 Uploaded
davidvanzessen
parents:
diff changeset
84 font-family:"Times New Roman","serif"'>Bar graph showing the frequency of D
5d11c9139a55 Uploaded
davidvanzessen
parents:
diff changeset
85 genes in all uploaded donors. The order of the D genes on the x-axis can be
5d11c9139a55 Uploaded
davidvanzessen
parents:
diff changeset
86 altered by altering the “<span style='color:black;background:white'>Order of
5d11c9139a55 Uploaded
davidvanzessen
parents:
diff changeset
87 V(D)J genes in graphs” filter on the main page of the Immune repertoire
5d11c9139a55 Uploaded
davidvanzessen
parents:
diff changeset
88 pipeline.</span></span></p>
5d11c9139a55 Uploaded
davidvanzessen
parents:
diff changeset
89
5d11c9139a55 Uploaded
davidvanzessen
parents:
diff changeset
90 <p class=MsoNoSpacing style='text-align:justify'><u><span lang=EN-GB
5d11c9139a55 Uploaded
davidvanzessen
parents:
diff changeset
91 style='font-size:12.0pt;font-family:"Times New Roman","serif"'>Relative
5d11c9139a55 Uploaded
davidvanzessen
parents:
diff changeset
92 frequency of J gene usage</span></u></p>
5d11c9139a55 Uploaded
davidvanzessen
parents:
diff changeset
93
5d11c9139a55 Uploaded
davidvanzessen
parents:
diff changeset
94 <p class=MsoNormalCxSpFirst style='margin-bottom:0in;margin-bottom:.0001pt;
5d11c9139a55 Uploaded
davidvanzessen
parents:
diff changeset
95 text-align:justify;line-height:normal'><span lang=EN-GB style='font-size:12.0pt;
5d11c9139a55 Uploaded
davidvanzessen
parents:
diff changeset
96 font-family:"Times New Roman","serif"'>Bar graph showing the frequency of J
5d11c9139a55 Uploaded
davidvanzessen
parents:
diff changeset
97 genes in all uploaded donors. The order of the J genes on the x-axis can be
5d11c9139a55 Uploaded
davidvanzessen
parents:
diff changeset
98 altered by altering the “<span style='color:black;background:white'>Order of
5d11c9139a55 Uploaded
davidvanzessen
parents:
diff changeset
99 V(D)J genes in graphs” filter on the main page of the Immune repertoire
5d11c9139a55 Uploaded
davidvanzessen
parents:
diff changeset
100 pipeline.</span></span></p>
5d11c9139a55 Uploaded
davidvanzessen
parents:
diff changeset
101
5d11c9139a55 Uploaded
davidvanzessen
parents:
diff changeset
102 </div>
5d11c9139a55 Uploaded
davidvanzessen
parents:
diff changeset
103
5d11c9139a55 Uploaded
davidvanzessen
parents:
diff changeset
104 </body>
5d11c9139a55 Uploaded
davidvanzessen
parents:
diff changeset
105
5d11c9139a55 Uploaded
davidvanzessen
parents:
diff changeset
106 </html>