Mercurial > repos > davidvanzessen > argalaxy_tools
comparison imgt_loader/imgt_loader.r @ 31:3a76faa53c59 draft
Uploaded
author | davidvanzessen |
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date | Tue, 14 Mar 2017 06:51:38 -0400 |
parents | 798b62942b4b |
children | bad6a9a53ae7 |
comparison
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30:b50965edac24 | 31:3a76faa53c59 |
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29 out[,"CDR1.Length"] = summ[,"CDR1.IMGT.length"] | 29 out[,"CDR1.Length"] = summ[,"CDR1.IMGT.length"] |
30 | 30 |
31 out[,"CDR2.Seq"] = aa[,"CDR2.IMGT"] | 31 out[,"CDR2.Seq"] = aa[,"CDR2.IMGT"] |
32 out[,"CDR2.Length"] = summ[,"CDR2.IMGT.length"] | 32 out[,"CDR2.Length"] = summ[,"CDR2.IMGT.length"] |
33 | 33 |
34 out[,"CDR3.Seq"] = aa[,"CDR3.IMGT"] | 34 out[,"CDR3.Seq"] = gapped.aa[,"CDR3.IMGT"] |
35 out[,"CDR3.Length"] = summ[,"CDR3.IMGT.length"] | 35 out[,"CDR3.Length"] = summ[,"CDR3.IMGT.length"] |
36 | 36 |
37 out[,"CDR3.Seq.DNA"] = gapped.aa[,"CDR3.IMGT"] | 37 out[,"CDR3.IMGT"] = out[,"CDR3.Seq"] |
38 | |
39 out[,"CDR3.Seq.DNA"] = sequences[,"CDR3.IMGT"] | |
38 out[,"CDR3.Length.DNA"] = nchar(as.character(out[,"CDR3.Seq.DNA"])) | 40 out[,"CDR3.Length.DNA"] = nchar(as.character(out[,"CDR3.Seq.DNA"])) |
39 out[,"Strand"] = summ[,"Orientation"] | 41 out[,"Strand"] = summ[,"Orientation"] |
40 out[,"CDR3.Found.How"] = "a" | 42 out[,"CDR3.Found.How"] = "a" |
41 | 43 |
42 out[,added_summary_columns] = summ[,added_summary_columns] | 44 out[,added_summary_columns] = summ[,added_summary_columns] |