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comparison complete_immunerepertoire.xml @ 60:5a45335f67f0 draft default tip

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planemo upload commit a6311946297fd040bc4d1cf9808282d60770ce81
author rhpvorderman
date Wed, 26 Mar 2025 14:30:06 +0000
parents 14cecb0cac92
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59:14cecb0cac92 60:5a45335f67f0
1 <tool id="complete_immunerepertoire_igg" name="Immune Repertoire pipeline" version="1.1.2" profile="16.04"> 1 <tool id="complete_immunerepertoire_igg" name="Immune Repertoire pipeline" version="1.1.3" profile="16.04">
2 <requirements> 2 <requirements>
3 <requirement type="package" version="2.3">r-gridextra</requirement> 3 <requirement type="package" version="2.3">r-gridextra</requirement>
4 <requirement type="package" version="3.0.0">r-ggplot2</requirement> 4 <requirement type="package" version="3.0.0">r-ggplot2</requirement>
5 <requirement type="package" version="1.8.4">r-plyr</requirement> 5 <requirement type="package" version="1.8.4">r-plyr</requirement>
6 <requirement type="package" version="1.11.4">r-data.table</requirement> 6 <requirement type="package" version="1.11.4">r-data.table</requirement>
17 <requirement type="package" version="4.6.0">findutils</requirement> 17 <requirement type="package" version="4.6.0">findutils</requirement>
18 <container type="docker">quay.io/argalaxy/mulled-v2-62aaeb9dad7d9973e676594c3aa69e605c73cd0c:80328e762d48b0d7b11c4fa41a5c09ca43d49db9-0</container> 18 <container type="docker">quay.io/argalaxy/mulled-v2-62aaeb9dad7d9973e676594c3aa69e605c73cd0c:80328e762d48b0d7b11c4fa41a5c09ca43d49db9-0</container>
19 </requirements> 19 </requirements>
20 <description> </description> 20 <description> </description>
21 <command interpreter="bash"> 21 <command interpreter="bash">
22 complete.sh " 22 bash $__tool_directory__/complete.sh "
23 #for $i, $f in enumerate($patients) 23 #for $i, $f in enumerate($patients)
24 "${f.id}" 24 "${f.id}"
25 #for $j, $g in enumerate($f.samples) 25 #for $j, $g in enumerate($f.samples)
26 ${g.sample} 26 ${g.sample}
27 #end for 27 #end for