Mercurial > repos > davidvanzessen > argalaxy_tools

comparison report_clonality/r_wrapper.sh @ 54:81b3eb11ed2c draft

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"planemo upload commit 6c0195cc4de6a34e2c46d875be4fc2157a21cdf6"
author rhpvorderman
date Tue, 16 Nov 2021 15:42:32 +0000
parents 0ef7f80ea061
children 33412e85e669
comparison
equal deleted inserted replaced
53:0ef7f80ea061 54:81b3eb11ed2c
15 echo "species D region in reference db" 15 echo "species D region in reference db"
16 useD="true" 16 useD="true"
17 fi 17 fi
18 echo "$species" 18 echo "$species"
19 if [[ "$species" == *"custom"* ]] ; then 19 if [[ "$species" == *"custom"* ]] ; then
20 loci=(${locus//;/ }) 20 loci=("${locus//;/ }")
21 useD="true" 21 useD="true"
22 echo "${loci[@]}" 22 echo "${loci[@]}"
23 if [[ "${#loci[@]}" -eq "2" ]] ; then 23 if [[ "${#loci[@]}" -eq "2" ]] ; then
24 useD="false" 24 useD="false"
25 fi 25 fi