Mercurial > repos > davidvanzessen > argalaxy_tools
comparison report_clonality/circos/ideogram.conf @ 5:bcec7bb4e089 draft
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| author | davidvanzessen |
|---|---|
| date | Mon, 12 Dec 2016 05:22:57 -0500 |
| parents | afe85eb6572e |
| children | 124b7fd92a3e |
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| 4:5ffd52fc35c4 | 5:bcec7bb4e089 |
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| 1 | |
| 2 <ideogram> | |
| 3 | |
| 4 <spacing> | |
| 5 | |
| 6 default = 0.0025r | |
| 7 | |
| 8 </spacing> | |
| 9 | |
| 10 thickness = 50p | |
| 11 stroke_thickness = 0 | |
| 12 # ideogram border color | |
| 13 stroke_color = black | |
| 14 fill = yes | |
| 15 # the default chromosome color is set here and any value | |
| 16 # defined in the karyotype file overrides it | |
| 17 fill_color = black | |
| 18 | |
| 19 # fractional radius position of chromosome ideogram within image | |
| 20 radius = 0.85r | |
| 21 show_label = no | |
| 22 label_font = condensedbold | |
| 23 label_radius = 0.99r | |
| 24 label_size = 36 | |
| 25 | |
| 26 # cytogenetic bands | |
| 27 band_stroke_thickness = 2 | |
| 28 | |
| 29 # show_bands determines whether the outline of cytogenetic bands | |
| 30 # will be seen | |
| 31 show_bands = no | |
| 32 # in order to fill the bands with the color defined in the karyotype | |
| 33 # file you must set fill_bands | |
| 34 fill_bands = yes | |
| 35 | |
| 36 </ideogram> | |
| 37 |