Mercurial > repos > davidvanzessen > argalaxy_tools
comparison report_clonality_igg.xml @ 3:beaa487ecf43 draft
Uploaded
| author | davidvanzessen |
|---|---|
| date | Wed, 07 Dec 2016 08:36:23 -0500 |
| parents | afe85eb6572e |
| children |
comparison
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| 2:4f8a1d121384 | 3:beaa487ecf43 |
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| 9 </command> | 9 </command> |
| 10 <inputs> | 10 <inputs> |
| 11 <param name="in_file" format="tabular" type="data" label="Data to Process" /> | 11 <param name="in_file" format="tabular" type="data" label="Data to Process" /> |
| 12 <param name="clonaltype" type="select" label="Clonal Type Definition (Needed for clonality calculation)"> | 12 <param name="clonaltype" type="select" label="Clonal Type Definition (Needed for clonality calculation)"> |
| 13 <option value="none">Don't remove duplicates based on clonaltype</option> | 13 <option value="none">Don't remove duplicates based on clonaltype</option> |
| 14 <option value="Top.V.Gene,CDR3.Seq">Top.V.Gene, CDR3.AA.Seq</option> | 14 <option value="Top.V.Gene,CDR3.Seq">Top.V.Gene, CDR3 (AA)</option> |
| 15 <option value="Top.V.Gene,CDR3.Seq.DNA">Top.V.Gene, CDR3.Seq.DNA</option> | 15 <option value="Top.V.Gene,CDR3.Seq.DNA">Top.V.Gene, CDR3 (nt)</option> |
| 16 <option value="Top.V.Gene,Top.J.Gene,CDR3.Seq">Top.V.Gene, Top.J.Gene, CDR3.AA.Seq</option> | 16 <option value="Top.V.Gene,Top.J.Gene,CDR3.Seq">Top.V.Gene, Top.J.Gene, CDR3 (AA)</option> |
| 17 <option value="Top.V.Gene,Top.J.Gene,CDR3.Seq.DNA">Top.V.Gene, Top.J.Gene, CDR3.Seq.DNA</option> | 17 <option value="Top.V.Gene,Top.J.Gene,CDR3.Seq.DNA">Top.V.Gene, Top.J.Gene, CDR3 (nt)</option> |
| 18 <option value="Top.V.Gene,Top.D.Gene,Top.J.Gene,CDR3.Seq.DNA">Top.V.Gene, Top.D.Gene, Top.J.Gene, CDR3.Seq.DNA</option> | 18 <option value="Top.V.Gene,Top.D.Gene,Top.J.Gene,CDR3.Seq.DNA">Top.V.Gene, Top.D.Gene, Top.J.Gene, CDR3 (nt)</option> |
| 19 <option value="Top.V.Gene,Top.D.Gene,Top.J.Gene,CDR3.Seq">Top.V.Gene, Top.D.Gene, Top.J.Gene, CDR3.AA.DNA</option> | 19 <option value="Top.V.Gene,Top.D.Gene,Top.J.Gene,CDR3.Seq">Top.V.Gene, Top.D.Gene, Top.J.Gene, CDR3 (AA)</option> |
| 20 </param> | 20 </param> |
| 21 | 21 |
| 22 <conditional name="gene_selection" > | 22 <conditional name="gene_selection" > |
| 23 <param name="source" type="select" label="Gene reference" help="" > | 23 <param name="source" type="select" label="Gene reference" help="" > |
| 24 <option value="imgtdb" selected="true">IMGT-DB</option> | 24 <option value="imgtdb" selected="true">IMGT-DB</option> |