--- a/imgt_loader/imgt_loader.sh	Mon Apr 24 09:39:59 2017 -0400
+++ b/imgt_loader/imgt_loader.sh	Tue May 30 07:26:33 2017 -0400
@@ -66,6 +66,9 @@
 find $PWD/$name/files -iname "5_*" -exec cat {} + > $PWD/$name/aa.txt
 find $PWD/$name/files -iname "6_*" -exec cat {} + > $PWD/$name/junction.txt
 
+echo "summ.txt `cat $PWD/$name/summ.txt | wc -l`"
+echo "aa.txt `cat $PWD/$name/aa.txt | wc -l`"
+
 #python $dir/imgt_loader.py --summ $PWD/$name/summ.txt --aa $PWD/$name/aa.txt --junction $PWD/$name/junction.txt --output $output
 
 Rscript --verbose $dir/imgt_loader.r $PWD/$name/summ.txt $PWD/$name/sequences.txt $PWD/$name/aa.txt $PWD/$name/junction.txt $PWD/$name/gapped_aa.txt $output 2>&1