Mercurial > repos > davidvanzessen > argalaxy_tools
diff tests/test_imgt.py @ 57:33412e85e669 draft
"planemo upload commit 2a9ed3adf321f18047c3746735a5e79a4586798d"
author | rhpvorderman |
---|---|
date | Wed, 02 Feb 2022 10:50:01 +0000 |
parents | 7ae6b6b5d890 |
children |
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--- a/tests/test_imgt.py Tue Dec 14 12:45:47 2021 +0000 +++ b/tests/test_imgt.py Wed Feb 02 10:50:01 2022 +0000 @@ -77,6 +77,12 @@ docker_cmd = ["docker", "run", "-v", f"{temp_dir}:{temp_dir}", "-v", f"{sample}:{sample}", "-w", str(working_dir), + # Run as current user which allows deletion of files. + # It also mitigates some security considerations + "-u", f"{os.getuid()}:{os.getgid()}", + # Run with default seccomp profile to mitigate mitigation slowdown + # http://mamememo.blogspot.com/2020/05/cpu-intensive-rubypython-code-runs.html + "--security-opt", "seccomp=unconfined", get_container()] + cmd with open(temp_dir / "stderr", "wt") as stderr_file: with open(temp_dir / "stdout", "wt") as stdout_file: