Mercurial > repos > davidvanzessen > argalaxy_tools

diff complete.sh @ 7:54f6756bacb1 draft

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Uploaded
author davidvanzessen
date Fri, 16 Dec 2016 09:01:40 -0500
parents afe85eb6572e
children d5d203d38c8a
line wrap: on
line diff
--- a/complete.sh	Fri Dec 16 07:30:32 2016 -0500
+++ b/complete.sh	Fri Dec 16 09:01:40 2016 -0500
@@ -46,7 +46,7 @@
 		bash ${dir}/imgt_loader/imgt_loader.sh $current $parsedFileName "${fileName}"
 	else
 		echo "<tr><td>Sample $count of patient $id is not a zip file so assuming fasta/fastq, using igBLASTn</td></tr>" >> $html
-		bash ${dir}/igblast/igblast.sh $current $species $locus $parsedFileName
+		bash ${dir}/igblast/igblast.sh $current "$species" $locus $parsedFileName
 	fi
 	mergerInput+=($parsedFileName)
 	count=$((count+1))